Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.010415 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.055585 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.067523 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.011986 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background Finished invoke: name: bg status: 0 time: 0.009637 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 780.55067 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 39.607883 Invoking: centrimo -seqlen 390 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.215771 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.545397 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background -primary MCMACTRVRCYAHVNRRSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.308866 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background -primary AYGAYCTTCTGATTANNAGTCWGACGCSYT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.27194 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background -primary GAWTCGAACCSGGGTYBYMMSGATSRAAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.257237 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background -primary AGTGGTWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.177003 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background -primary CAACTKGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.180983 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.162284 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background -primary CGWTGCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.17863 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background -primary CAASAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.219096 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background -primary ACTGAGCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.160531 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background -primary ACMATTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.173435 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background -primary AAARCCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.165758 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background --motif MCMACTRVRCYAHVNRRSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa Finished invoke: name: fimo1 status: 0 time: 0.167135 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background --motif AYGAYCTTCTGATTANNAGTCWGACGCSYT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa Finished invoke: name: fimo2 status: 0 time: 0.170778 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background --motif GAWTCGAACCSGGGTYBYMMSGATSRAAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa Finished invoke: name: fimo3 status: 0 time: 0.172102 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background --motif AGTGGTWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa Finished invoke: name: fimo4 status: 0 time: 0.087869 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background --motif CAACTKGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa Finished invoke: name: fimo5 status: 0 time: 0.086954 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa Finished invoke: name: fimo6 status: 0 time: 0.08895 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background --motif CGWTGCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa Finished invoke: name: fimo7 status: 0 time: 0.090253 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background --motif CAASAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa Finished invoke: name: fimo8 status: 0 time: 0.074817 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background --motif ACTGAGCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa Finished invoke: name: fimo9 status: 0 time: 0.08625 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background --motif ACMATTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa Finished invoke: name: fimo10 status: 0 time: 0.087084 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/background --motif AAARCCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/RM11-1A--YAP1.fa Finished invoke: name: fimo11 status: 0 time: 0.089177 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--YAP1/summary.tsv Finished invoke: name: summary status: 0 time: 0.175417 Done