Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.06645 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.061554 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.096587 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.028758 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background Finished invoke: name: bg status: 0 time: 0.023184 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 960.679176 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/seqs-shuffled Finished invoke: name: dreme status: 0 time: 104.102573 Invoking: centrimo -seqlen 584 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.227054 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.643004 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary CGDNSSCYYTAMCCACTRVGCCAHNVRVSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.485731 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary GRRTCGAACCSVKGAYCTYMHGATT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.403746 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary RRATGTAYGGRTGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.490967 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary CAWCGWTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.274418 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary GGTAD /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.722239 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.664165 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary ACCCADA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.432406 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary CMTTAGCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.25787 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary GCAGCAS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.328451 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary CAACVCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.279788 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary ARCAGGTC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.20159 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary GCCTTMA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.319542 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary ACGACGKC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.249759 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary GCYAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.51496 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary GASACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.516221 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary AABTGGT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.44767 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary ASTATCAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 0.24572 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_18 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary GAAAGWGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo18 status: 0 time: 0.294916 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_19 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary AGATTGGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo19 status: 0 time: 0.26734 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/spamo_out_20 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -primary TTAGTKAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml Finished invoke: name: spamo20 status: 0 time: 0.262202 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif CGDNSSCYYTAMCCACTRVGCCAHNVRVSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo1 status: 0 time: 0.598656 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif GRRTCGAACCSVKGAYCTYMHGATT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo2 status: 0 time: 0.567945 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif RRATGTAYGGRTGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo3 status: 0 time: 0.543641 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif CAWCGWTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo4 status: 0 time: 0.436975 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif GGTAD /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo5 status: 0 time: 0.393524 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo6 status: 0 time: 0.416012 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif ACCCADA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo7 status: 0 time: 0.431691 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif CMTTAGCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo8 status: 0 time: 0.439131 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif GCAGCAS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo9 status: 0 time: 0.421596 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif CAACVCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo10 status: 0 time: 0.442965 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif ARCAGGTC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo11 status: 0 time: 0.44045 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif GCCTTMA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo12 status: 0 time: 0.440569 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif ACGACGKC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo13 status: 0 time: 0.437747 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif GCYAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo14 status: 0 time: 0.404125 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif GASACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo15 status: 0 time: 0.408525 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif AABTGGT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo16 status: 0 time: 0.436737 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif ASTATCAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo17 status: 0 time: 0.425555 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_18 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif GAAAGWGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo18 status: 0 time: 0.448578 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_19 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif AGATTGGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo19 status: 0 time: 0.435739 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/fimo_out_20 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background --motif TTAGTKAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/RM11-1A--THP2.fa Finished invoke: name: fimo20 status: 0 time: 0.430357 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/summary.tsv Finished invoke: name: summary status: 0 time: 0.207672 Done