******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrXII:459541-460112 1.0000 100 chrIX:316128-316596 1.0000 100 chrII:477024-477458 1.0000 100 chrXII:796427-796837 1.0000 100 chrVII:254122-254562 1.0000 100 chrVIII:382914-383329 1.0000 100 chrXII:922112-922578 1.0000 100 chrV:305778-306197 1.0000 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1.0000 100 chrXV:447583-448167 1.0000 100 chrXI:42805-43071 1.0000 100 chrXIV:139876-140460 1.0000 100 chrVII:1020225-1020599 1.0000 100 chrIV:206233-206579 1.0000 100 chrVII:971946-972542 1.0000 100 chrXII:867596-868180 1.0000 100 chrIV:236293-236492 1.0000 100 chrIII:241575-242159 1.0000 100 chrX:419930-420514 1.0000 100 chrXV:411759-412343 1.0000 100 chrIV:655950-656205 1.0000 100 chrXVI:471578-471769 1.0000 100 chrXIII:120207-120791 1.0000 100 chrIV:1360357-1360941 1.0000 100 chrXVI:745690-746274 1.0000 100 chrXVI:471274-471715 1.0000 100 chrXI:382733-383317 1.0000 100 chrXIV:94198-94782 1.0000 100 chrX:295453-296037 1.0000 100 chrIV:1311041-1311625 1.0000 100 chrXIV:741447-741884 1.0000 100 chrVII:363089-363235 1.0000 100 chrXIV:511672-512256 1.0000 100 chrXIII:894591-894901 1.0000 100 chrXVI:868415-868999 1.0000 100 chrXII:934434-935018 1.0000 100 chrXIV:755918-757279 1.0000 100 chrI:65869-67259 1.0000 100 chrXV:545582-546166 1.0000 100 chrV:378712-379296 1.0000 100 chrIV:466740-467177 1.0000 100 chrVIII:240576-241160 1.0000 100 chrXIV:757403-758017 1.0000 100 chrV:460937-461083 1.0000 100 chrX:213023-213362 1.0000 100 chrXII:890666-891250 1.0000 100 chrIV:392641-392797 1.0000 100 chrXV:313150-313734 1.0000 100 chrVIII:383757-384341 1.0000 100 chrI:76974-78162 1.0000 100 chrXIII:879339-879923 1.0000 100 chrXIV:264778-265362 1.0000 100 chrX:123919-125820 1.0000 100 chrVII:474160-474744 1.0000 100 chrVII:251582-252166 1.0000 100 chrXIII:632576-633160 1.0000 100 chrIV:492438-492584 1.0000 100 chrIV:627229-627445 1.0000 100 chrVII:826426-826864 1.0000 100 chrXII:446089-446786 1.0000 100 chrII:173112-173696 1.0000 100 chrVII:556454-556600 1.0000 100 chrXI:42464-42775 1.0000 100 chrXVI:124017-125190 1.0000 100 chrXIII:245022-245606 1.0000 100 chrII:88927-89144 1.0000 100 chrXIV:181327-181911 1.0000 100 chrXV:1011527-1012111 1.0000 100 chrXVI:732807-733391 1.0000 100 chrII:613303-613449 1.0000 100 chrXVI:122529-122819 1.0000 100 chrIV:217744-218328 1.0000 100 chrIX:119029-119613 1.0000 100 chrXII:545160-545744 1.0000 100 chrIV:1462301-1462885 1.0000 100 chrXV:828185-828769 1.0000 100 chrII:230434-231018 1.0000 100 chrXIV:181529-182113 1.0000 100 chrXV:545809-546393 1.0000 100 chrIX:257494-258078 1.0000 100 chrVIII:383965-384549 1.0000 100 chrXII:587476-588060 1.0000 100 chrV:423414-423998 1.0000 100 chrII:606664-607248 1.0000 100 chrXVI:700665-701249 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 592 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59200 N= 592 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.300 C 0.200 G 0.200 T 0.300 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--THP2/background): A 0.304 C 0.196 G 0.196 T 0.304 ******************************************************************************** ******************************************************************************** MOTIF CGDNSSCYYTAMCCACTRVGCCAHNVRVSC MEME-1 width = 30 sites = 101 llr = 1593 E-value = 6.1e-272 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGDNSSCYYTAMCCACTRVGCCAHNVRVSC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 113321111365:2a::433::a3333411 pos.-specific C 5222536331:4a6:7:13:a7:4322248 probability G 253335221:11:1:::447::::33435: matrix T 2122::25463::::3a1:::3:221111: bits 2.3 * * 2.1 * * 1.9 * * 1.6 * * * * Relative 1.4 * *** * * * Entropy 1.2 * *** **** * (22.8 bits) 0.9 * *** **** * 0.7 ** ****** ***** * 0.5 ** *** * ****** ****** ** 0.2 ** ******************** ***** 0.0 ------------------------------ Multilevel CGAACGCTTTAACCACTGGGCCACCGGAGC consensus TCGGGC CCATC A T AAA T AGAAGC sequence T C TAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGDNSSCYYTAMCCACTRVGCCAHNVRVSC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXII:734607-734991 - 53 1.14e-11 GTTATTAGCA CGGTGCCTTAACCAACTGGGCCAAGAGACC AAACTTTGTT chrXVI:880073-880575 + 66 1.14e-11 GTTATTAGCA CGGTGCCTTAACCAACTGGGCCAAGAGACC ATTAT chrXVI:819318-819819 - 11 1.14e-11 GTTATTAGCA CGGTGCCTTAACCAACTGGGCCAAGAGACC ATTCTATTGT chrVII:738919-739323 - 51 1.14e-11 GTTATTAGCA CGGTGCCTTAACCAACTGGGCCAAGAGACC TATTTTTTTC chrXVI:856700-857092 - 56 1.40e-11 CCATGCTAAG GGAGCGCGCTACCGACTACGCCACACGCCC GAATCTTGTT chrXII:656789-657184 + 41 1.40e-11 CCATGCTAAG GGAGCGCGCTACCGACTACGCCACACGCCC AATTTTCTTG chrIV:1150717-1151114 + 47 5.24e-11 GAAATAGCAG GCATCGCCTTAACCACTCGGCCACTGGGAC TGAAACACTT chrXII:784151-784588 - 35 5.24e-11 GAAATAGCAG GCATCGCCTTAACCACTCGGCCACTGGGAC GGTTGAACAA chrXV:274474-274921 - 26 5.24e-11 AAATAGCAGG GCATCGCCTTAACCACTCGGCCACTGGGAC ACGATTACTT chrIV:884185-884622 - 8 3.90e-10 TGCTATAAGC ACGAAGCTCTAACCACTGAGCTACACGAGC ATTTTCG chrXVI:689362-689824 - 22 3.90e-10 GATTTCAAGT CTGTCGCCTTAACCACTCGGCCATAGTGCC CAAAATAATC chrVI:226571-226933 + 29 7.16e-10 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC ATTTTAATCT chrVII:185584-185935 + 48 7.16e-10 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TATTTCGTTG chrXII:875198-875631 - 12 7.16e-10 GCTTAAAAGC CGAACGCTCTACCAACTGAGCTAACAAGGA TGAGTTCTTC chrVII:122079-122495 - 32 7.16e-10 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TAATTCGTTG chrVII:115302-115705 - 35 7.16e-10 GCTTAAAAGC CGAACGCTCTACCAACTGAGCTAACAAGGA TGAGTTCTTC chrX:414793-415151 - 44 7.16e-10 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TAATTCGTTG chrI:166090-166516 - 14 7.16e-10 CCTTGCAAGG GAAGCGCGCTACCAACTGCGCCATGTGCCC AACTCATTAC chrXI:578774-579199 - 29 7.16e-10 GCTTAAAAGC CGAACGCTCTACCAACTGAGCTAACAAGGA TGAGTTCTTC chrV:435623-436022 + 23 7.16e-10 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TCTTATTGTT chrIV:1201540-1201966 - 47 7.16e-10 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TATTTATTTG chrV:135268-135688 + 40 7.16e-10 GATTAAGAGT CATACGCGCTACCGATTGCGCCAACAAGGC TTTTTTCTTG chrIII:227758-228178 - 24 7.16e-10 CCATTCGAGT CTCTCGCCTTAACCACTCGGCCATAGTGCC ATTTCGATTT chrXVI:769072-769518 + 28 7.16e-10 GCTTAAAAGC CGAACGCTCTACCAACTGAGCTAACAAGGA TGAGTTCTTC chrX:58999-59346 + 21 9.60e-10 CATTACTAGT GTGGCGCCTTACCAACTTGGCCATAGAAGC TTCTATTTTA chrXIV:104635-105041 - 17 9.60e-10 CATTACTAGT GTGGCGCCTTACCAACTTGGCCATAGAAGC TGAGAACTTG chrII:266195-266621 - 20 9.60e-10 CATTACTAGT GTGGCGCCTTACCAACTTGGCCATAGAAGC AGTTTTTGAT chrVIII:115945-116377 + 39 9.60e-10 CATTACTAGT GTGGCGCCTTACCAACTTGGCCATAGAAGC TCTAATAGTG chrIV:1305447-1305836 - 39 1.94e-09 GATTTCTAAT CTTTCGCCTTAACCACTCGGCCAAGTTGCC TTAATTTGTA chrXII:592393-592809 + 39 4.29e-09 CACCTAAATC TGACGCCTTAAACCACTCGGCCAAACTCCC ATTGTATGTT chrXII:731923-732301 - 28 4.29e-09 CACCTAAATC TGACGCCTTAAACCACTCGGCCAAACTCCC ATTGTATGTT chrXIV:726030-726388 + 29 6.26e-09 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC AAAGATTTAT chrIV:519577-519921 - 44 6.26e-09 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC GTAAAATCAC chrII:9396-9759 - 56 6.26e-09 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC ACGAATTTTC chrXII:962838-963255 + 30 6.26e-09 ATCTTAAGTC TGCCGCCTTAGACCACTCGGCCAACCCTCC GTCGATAATA chrIV:1175667-1176041 - 25 7.09e-09 GATTATGAGA CTGACGCTCTTCCTACTGAGCTACTGAAGC TTTGTTTTGT chrX:422748-423136 - 45 7.09e-09 GATTATGAGA CTGACGCTCTTCCTACTGAGCTACTGAAGC ATACAAAGGA chrX:390907-391330 + 18 7.09e-09 GATTATGAGA CTGACGCTCTTCCTACTGAGCTACTGAAGC ACTATTTCTT chrVII:930846-931219 + 12 8.00e-09 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTACTGATTA chrVII:845453-845877 - 34 8.00e-09 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTGTTATTTA chrXV:281965-282383 - 40 8.00e-09 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC GCTTTCATGT chrVI:162039-162405 - 56 8.00e-09 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTGTTTTCTT chrIII:142595-142971 + 9 8.00e-09 GATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TAGTAATCTT chrIV:992643-993041 - 40 8.00e-09 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TCACAATTGT chrXVI:860176-860590 - 46 8.00e-09 ACGATGGCAA CGTTGGATTTTACCACTAAACCACTTGCGC TTGTTATTTA chrXI:490772-491130 - 67 1.02e-08 TAGC CAGACGCCGTGACCATTGGGCCACGAGGAA CAAGAATTAT chrXII:374158-374639 - 7 1.02e-08 GGTTCGTAGC CAGACGCCGTGACCATTGGGCCACGAGGAA CAAGAT chrX:233724-234151 - 52 1.02e-08 GGTTCGTAGC CAGACGCCGTGACCATTGGGCCACGAGGAA CAAGAATATA chrIV:645027-645421 + 21 1.62e-08 GGATCAAAAC CGAAAGTGATAACCACTACACTATAGGACC GTAACAACTG chrIV:520784-521167 - 47 1.62e-08 GGATCAAAAC CGAAAGTGATAACCACTACACTATAGGACC CTAAAATGGA chrXII:448512-448914 + 29 1.62e-08 GGATCAAAAC CGAAAGTGATAACCACTACACTATAGGACC GGAACTTCTT chrIV:802583-803001 + 31 1.62e-08 GGATCAAAAC CGAAAGTGATAACCACTACACTATAGGACC GACAATTCAT chrX:538380-538750 - 40 2.03e-08 TCCTTAGGAG GGAGACGCGTTACCATTACGCCAACGGAAC CAACTTGGTT chrIV:1095190-1095648 + 63 2.26e-08 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAGTCCGC TAACATAA chrVI:137332-137742 + 43 2.26e-08 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC AGTCACTTTT chrXIV:102507-102998 - 14 2.26e-08 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC TTATAATATA chrVII:730948-731362 - 32 2.26e-08 ATTAACAGTC GCACGCCTTAACCAACTTGGCCATGGAGTC TTTTTGACTA chrV:438542-438884 - 37 2.82e-08 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC TAATTTGTTG chrX:378165-378568 - 44 2.82e-08 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC TATTAATTTA chrV:469275-469667 - 36 2.82e-08 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC AATTATTTCT chrXIII:420446-420845 + 37 2.82e-08 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC TGTTATTTGT chrVII:823275-823686 - 52 2.82e-08 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC ACTCTTATTG chrXI:308017-308417 + 21 2.82e-08 CGTGTTAAGC AGATGCCATAACCGACTAGACCACGAAACC ACTTAATTGT chrXVI:744081-744505 - 41 2.82e-08 GCATTACAAG TGCAACGCTCTACCACTAAGCTAAGGAGGC TTTTACACTG chrXI:46639-46991 + 12 3.87e-08 GCATTACGAG TGCGATGCCTTACCACTTGGCCAAAAGGGC TGAGTAATTT chrXIII:195949-196366 + 34 3.87e-08 GTCGCCCAAA GCGAGAATCATACCACTAGACCACACGCCC TTGTGAACTT chrVII:857231-857670 + 62 3.87e-08 TTCTTGAATC AGGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATTTG chrVIII:237728-238135 + 29 3.87e-08 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAATCCGC TTACTATTTG chrIV:488561-489079 + 71 3.87e-08 CGTGTAAAGG CGACGTCTTGAACCACTGGACCATTGGACC chrXII:628191-628642 - 17 3.87e-08 TTCTTGAATC AGGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATTTGT chrII:36181-36600 - 58 3.87e-08 TTTCTTCAGT CTGGCGCTCTCCCAACTGAGCTAAATCCGC TTACAACTGA chrXIV:442799-443290 - 12 3.87e-08 TTCTTGAATC AGGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATTTGT chrXI:162307-162734 + 59 4.30e-08 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC TAATATTTGT chrXIII:747714-748164 + 45 4.30e-08 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC TAGTCATATA chrII:405686-406137 - 17 4.30e-08 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC TACTATTTGT chrIV:568693-569166 - 3 4.30e-08 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC TA chrVII:736120-736566 - 47 4.30e-08 TGATTAGAAG TCAGACGCGTTGCCATTACGCCACGCGAGC TATTGAAATT chrV:130970-131329 + 25 5.27e-08 GGATCAAAAC CGAAAGTGATAACCACTACACTATAAAACC TCTTAATTAT chrXV:594232-594612 + 24 5.27e-08 GCTTGGGAAG CATAAATTCTAACCACTGAACCACTTGCGC GTTTCAATCA chrII:642880-643272 + 23 1.38e-07 AGATTTGCAA TCTGCTGCGCTACCACTGCGCCATACGAGC TTTCTATTAC chrXVI:435750-436164 + 28 1.38e-07 AGATTTGCAA TCTGCTGCGCTACCACTGCGCCATACGAGC TTTTGTTGTA chrVII:779428-779831 - 37 1.51e-07 CCTTGGAAGG GTGGGATGATAACCACTACACTAACCGCCC GGGGTTAACT chrXIV:96072-96515 + 40 1.51e-07 CCTTGGAAGG GTGGGATGATAACCACTACACTAACCGCCC ATGTGTTGGA chrIV:1256901-1257284 + 8 3.28e-07 TGGGAAG CATGAATTCTAACCACTGAACCACTTTCGC TAAGAAGATC chrX:541350-541703 - 32 6.17e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA TTTTCTTTCT chrX:204542-204936 - 46 6.17e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA TTTTTATGTT chrXII:793707-794160 - 35 6.17e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA TTATATTACA chrVII:544422-544862 + 27 6.17e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA AGAAATATCT chrX:374233-374765 + 17 6.17e-07 ACGCGACAAG CGCCCATTCTGACCATTAAACTATCACGGA AGAAACAAAG chrX:517687-518052 + 36 1.18e-06 GGGTTATGAG CCCTGCGCGCTTCCACTGCGCCACGGCGCT TAACTTTTAT chrV:99928-100328 - 55 1.18e-06 GGGTTATGAG CCCTGCGCGCTTCCACTGCGCCACGGCGCT TAGCCAACTT chrX:354049-354438 - 51 1.18e-06 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG TGATAAATGA chrXIII:168619-169056 - 8 1.18e-06 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG TGACTAT chrIV:946081-946577 - 33 1.18e-06 ATTACAGTCT TGCGCCTTAAACCAACTTGGCTACCGAGAG TCGATTTCTT chrVII:878583-879017 + 36 1.55e-06 TTAATTGGAG TCGAAAGCTCTACCATTGAGCCACCGCTTC ATCTTGAAAT chrX:415819-416231 + 32 1.55e-06 TTAATTGGAG TCGAAAGCTCTACCATTGAGCCACCGCTTC AACTTTTGTT chrVII:287205-287642 + 53 1.55e-06 TTAATTGGAG TCGAAAGCTCTACCATTGAGCCACCGCTTC ATCTTGAAAT chrXIII:379182-379602 + 37 1.55e-06 TTAATTGGAG TCGAAAGCTCTACCATTGAGCCACCGCTTC AACTTTTATT chrXII:818457-818812 - 25 2.27e-06 CCACCGGAAG AATGCATGCTAACCATTGCACTAGAGGAGC ATAATAAATT chrVIII:475560-475960 + 39 2.42e-06 CCGTGTGAAG GCAACGTGATAGCCGCTACACTATTGGAAC AGACTTTTAA chrIV:1075333-1075730 + 34 2.42e-06 CCGTGTGAAG GCAACGTGATAGCCGCTACACTATTGGAAC AATATTACGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGDNSSCYYTAMCCACTRVGCCAHNVRVSC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:734607-734991 1.1e-11 52_[-1]_18 chrXVI:880073-880575 1.1e-11 65_[+1]_5 chrXVI:819318-819819 1.1e-11 10_[-1]_60 chrVII:738919-739323 1.1e-11 50_[-1]_20 chrXVI:856700-857092 1.4e-11 55_[-1]_15 chrXII:656789-657184 1.4e-11 40_[+1]_30 chrIV:1150717-1151114 5.2e-11 46_[+1]_24 chrXII:784151-784588 5.2e-11 34_[-1]_36 chrXV:274474-274921 5.2e-11 25_[-1]_45 chrIV:884185-884622 3.9e-10 7_[-1]_63 chrXVI:689362-689824 3.9e-10 21_[-1]_49 chrVI:226571-226933 7.2e-10 28_[+1]_42 chrVII:185584-185935 7.2e-10 47_[+1]_23 chrXII:875198-875631 7.2e-10 11_[-1]_59 chrVII:122079-122495 7.2e-10 31_[-1]_39 chrVII:115302-115705 7.2e-10 34_[-1]_36 chrX:414793-415151 7.2e-10 43_[-1]_27 chrI:166090-166516 7.2e-10 13_[-1]_57 chrXI:578774-579199 7.2e-10 28_[-1]_42 chrV:435623-436022 7.2e-10 22_[+1]_48 chrIV:1201540-1201966 7.2e-10 46_[-1]_24 chrV:135268-135688 7.2e-10 39_[+1]_31 chrIII:227758-228178 7.2e-10 23_[-1]_47 chrXVI:769072-769518 7.2e-10 27_[+1]_43 chrX:58999-59346 9.6e-10 20_[+1]_50 chrXIV:104635-105041 9.6e-10 16_[-1]_54 chrII:266195-266621 9.6e-10 19_[-1]_51 chrVIII:115945-116377 9.6e-10 38_[+1]_32 chrIV:1305447-1305836 1.9e-09 38_[-1]_32 chrXII:592393-592809 4.3e-09 38_[+1]_32 chrXII:731923-732301 4.3e-09 27_[-1]_43 chrXIV:726030-726388 6.3e-09 28_[+1]_42 chrIV:519577-519921 6.3e-09 43_[-1]_27 chrII:9396-9759 6.3e-09 55_[-1]_15 chrXII:962838-963255 6.3e-09 29_[+1]_41 chrIV:1175667-1176041 7.1e-09 24_[-1]_46 chrX:422748-423136 7.1e-09 44_[-1]_26 chrX:390907-391330 7.1e-09 17_[+1]_53 chrVII:930846-931219 8e-09 11_[+1]_59 chrVII:845453-845877 8e-09 33_[-1]_37 chrXV:281965-282383 8e-09 39_[-1]_31 chrVI:162039-162405 8e-09 55_[-1]_15 chrIII:142595-142971 8e-09 8_[+1]_62 chrIV:992643-993041 8e-09 39_[-1]_31 chrXVI:860176-860590 8e-09 45_[-1]_25 chrXI:490772-491130 1e-08 66_[-1]_4 chrXII:374158-374639 1e-08 6_[-1]_64 chrX:233724-234151 1e-08 51_[-1]_19 chrIV:645027-645421 1.6e-08 20_[+1]_50 chrIV:520784-521167 1.6e-08 46_[-1]_24 chrXII:448512-448914 1.6e-08 28_[+1]_42 chrIV:802583-803001 1.6e-08 30_[+1]_40 chrX:538380-538750 2e-08 39_[-1]_31 chrIV:1095190-1095648 2.3e-08 62_[+1]_8 chrVI:137332-137742 2.3e-08 42_[+1]_28 chrXIV:102507-102998 2.3e-08 13_[-1]_57 chrVII:730948-731362 2.3e-08 31_[-1]_39 chrV:438542-438884 2.8e-08 36_[-1]_34 chrX:378165-378568 2.8e-08 43_[-1]_27 chrV:469275-469667 2.8e-08 35_[-1]_35 chrXIII:420446-420845 2.8e-08 36_[+1]_34 chrVII:823275-823686 2.8e-08 51_[-1]_19 chrXI:308017-308417 2.8e-08 20_[+1]_50 chrXVI:744081-744505 2.8e-08 40_[-1]_30 chrXI:46639-46991 3.9e-08 11_[+1]_59 chrXIII:195949-196366 3.9e-08 33_[+1]_37 chrVII:857231-857670 3.9e-08 61_[+1]_9 chrVIII:237728-238135 3.9e-08 28_[+1]_42 chrIV:488561-489079 3.9e-08 70_[+1] chrXII:628191-628642 3.9e-08 16_[-1]_54 chrII:36181-36600 3.9e-08 57_[-1]_13 chrXIV:442799-443290 3.9e-08 11_[-1]_59 chrXI:162307-162734 4.3e-08 58_[+1]_12 chrXIII:747714-748164 4.3e-08 44_[+1]_26 chrII:405686-406137 4.3e-08 16_[-1]_54 chrIV:568693-569166 4.3e-08 2_[-1]_68 chrVII:736120-736566 4.3e-08 46_[-1]_24 chrV:130970-131329 5.3e-08 24_[+1]_46 chrXV:594232-594612 5.3e-08 23_[+1]_47 chrII:642880-643272 1.4e-07 22_[+1]_48 chrXVI:435750-436164 1.4e-07 27_[+1]_43 chrVII:779428-779831 1.5e-07 36_[-1]_34 chrXIV:96072-96515 1.5e-07 39_[+1]_31 chrIV:1256901-1257284 3.3e-07 7_[+1]_63 chrX:541350-541703 6.2e-07 31_[-1]_39 chrX:204542-204936 6.2e-07 45_[-1]_25 chrXII:793707-794160 6.2e-07 34_[-1]_36 chrVII:544422-544862 6.2e-07 26_[+1]_44 chrX:374233-374765 6.2e-07 16_[+1]_54 chrX:517687-518052 1.2e-06 35_[+1]_35 chrV:99928-100328 1.2e-06 54_[-1]_16 chrX:354049-354438 1.2e-06 50_[-1]_20 chrXIII:168619-169056 1.2e-06 7_[-1]_63 chrIV:946081-946577 1.2e-06 32_[-1]_38 chrVII:878583-879017 1.5e-06 35_[+1]_35 chrX:415819-416231 1.5e-06 31_[+1]_39 chrVII:287205-287642 1.5e-06 52_[+1]_18 chrXIII:379182-379602 1.5e-06 36_[+1]_34 chrXII:818457-818812 2.3e-06 24_[-1]_46 chrVIII:475560-475960 2.4e-06 38_[+1]_32 chrIV:1075333-1075730 2.4e-06 33_[+1]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGDNSSCYYTAMCCACTRVGCCAHNVRVSC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGDNSSCYYTAMCCACTRVGCCAHNVRVSC width=30 seqs=101 chrXII:734607-734991 ( 53) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXVI:880073-880575 ( 66) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXVI:819318-819819 ( 11) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrVII:738919-739323 ( 51) CGGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrXVI:856700-857092 ( 56) GGAGCGCGCTACCGACTACGCCACACGCCC 1 chrXII:656789-657184 ( 41) GGAGCGCGCTACCGACTACGCCACACGCCC 1 chrIV:1150717-1151114 ( 47) GCATCGCCTTAACCACTCGGCCACTGGGAC 1 chrXII:784151-784588 ( 35) GCATCGCCTTAACCACTCGGCCACTGGGAC 1 chrXV:274474-274921 ( 26) GCATCGCCTTAACCACTCGGCCACTGGGAC 1 chrIV:884185-884622 ( 8) ACGAAGCTCTAACCACTGAGCTACACGAGC 1 chrXVI:689362-689824 ( 22) CTGTCGCCTTAACCACTCGGCCATAGTGCC 1 chrVI:226571-226933 ( 29) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrVII:185584-185935 ( 48) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrXII:875198-875631 ( 12) CGAACGCTCTACCAACTGAGCTAACAAGGA 1 chrVII:122079-122495 ( 32) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrVII:115302-115705 ( 35) CGAACGCTCTACCAACTGAGCTAACAAGGA 1 chrX:414793-415151 ( 44) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrI:166090-166516 ( 14) GAAGCGCGCTACCAACTGCGCCATGTGCCC 1 chrXI:578774-579199 ( 29) CGAACGCTCTACCAACTGAGCTAACAAGGA 1 chrV:435623-436022 ( 23) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrIV:1201540-1201966 ( 47) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrV:135268-135688 ( 40) CATACGCGCTACCGATTGCGCCAACAAGGC 1 chrIII:227758-228178 ( 24) CTCTCGCCTTAACCACTCGGCCATAGTGCC 1 chrXVI:769072-769518 ( 28) CGAACGCTCTACCAACTGAGCTAACAAGGA 1 chrX:58999-59346 ( 21) GTGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrXIV:104635-105041 ( 17) GTGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrII:266195-266621 ( 20) GTGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrVIII:115945-116377 ( 39) GTGGCGCCTTACCAACTTGGCCATAGAAGC 1 chrIV:1305447-1305836 ( 39) CTTTCGCCTTAACCACTCGGCCAAGTTGCC 1 chrXII:592393-592809 ( 39) TGACGCCTTAAACCACTCGGCCAAACTCCC 1 chrXII:731923-732301 ( 28) TGACGCCTTAAACCACTCGGCCAAACTCCC 1 chrXIV:726030-726388 ( 29) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrIV:519577-519921 ( 44) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrII:9396-9759 ( 56) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrXII:962838-963255 ( 30) TGCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrIV:1175667-1176041 ( 25) CTGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrX:422748-423136 ( 45) CTGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrX:390907-391330 ( 18) CTGACGCTCTTCCTACTGAGCTACTGAAGC 1 chrVII:930846-931219 ( 12) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrVII:845453-845877 ( 34) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrXV:281965-282383 ( 40) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrVI:162039-162405 ( 56) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrIII:142595-142971 ( 9) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrIV:992643-993041 ( 40) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrXVI:860176-860590 ( 46) CGTTGGATTTTACCACTAAACCACTTGCGC 1 chrXI:490772-491130 ( 67) CAGACGCCGTGACCATTGGGCCACGAGGAA 1 chrXII:374158-374639 ( 7) CAGACGCCGTGACCATTGGGCCACGAGGAA 1 chrX:233724-234151 ( 52) CAGACGCCGTGACCATTGGGCCACGAGGAA 1 chrIV:645027-645421 ( 21) CGAAAGTGATAACCACTACACTATAGGACC 1 chrIV:520784-521167 ( 47) CGAAAGTGATAACCACTACACTATAGGACC 1 chrXII:448512-448914 ( 29) CGAAAGTGATAACCACTACACTATAGGACC 1 chrIV:802583-803001 ( 31) CGAAAGTGATAACCACTACACTATAGGACC 1 chrX:538380-538750 ( 40) GGAGACGCGTTACCATTACGCCAACGGAAC 1 chrIV:1095190-1095648 ( 63) CTGGCGCTCTCCCAACTGAGCTAAGTCCGC 1 chrVI:137332-137742 ( 43) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXIV:102507-102998 ( 14) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrVII:730948-731362 ( 32) GCACGCCTTAACCAACTTGGCCATGGAGTC 1 chrV:438542-438884 ( 37) AGATGCCATAACCGACTAGACCACGAAACC 1 chrX:378165-378568 ( 44) AGATGCCATAACCGACTAGACCACGAAACC 1 chrV:469275-469667 ( 36) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXIII:420446-420845 ( 37) AGATGCCATAACCGACTAGACCACGAAACC 1 chrVII:823275-823686 ( 52) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXI:308017-308417 ( 21) AGATGCCATAACCGACTAGACCACGAAACC 1 chrXVI:744081-744505 ( 41) TGCAACGCTCTACCACTAAGCTAAGGAGGC 1 chrXI:46639-46991 ( 12) TGCGATGCCTTACCACTTGGCCAAAAGGGC 1 chrXIII:195949-196366 ( 34) GCGAGAATCATACCACTAGACCACACGCCC 1 chrVII:857231-857670 ( 62) AGGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrVIII:237728-238135 ( 29) CTGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrIV:488561-489079 ( 71) CGACGTCTTGAACCACTGGACCATTGGACC 1 chrXII:628191-628642 ( 17) AGGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrII:36181-36600 ( 58) CTGGCGCTCTCCCAACTGAGCTAAATCCGC 1 chrXIV:442799-443290 ( 12) AGGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrXI:162307-162734 ( 59) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 chrXIII:747714-748164 ( 45) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 chrII:405686-406137 ( 17) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 chrIV:568693-569166 ( 3) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 chrVII:736120-736566 ( 47) TCAGACGCGTTGCCATTACGCCACGCGAGC 1 chrV:130970-131329 ( 25) CGAAAGTGATAACCACTACACTATAAAACC 1 chrXV:594232-594612 ( 24) CATAAATTCTAACCACTGAACCACTTGCGC 1 chrII:642880-643272 ( 23) TCTGCTGCGCTACCACTGCGCCATACGAGC 1 chrXVI:435750-436164 ( 28) TCTGCTGCGCTACCACTGCGCCATACGAGC 1 chrVII:779428-779831 ( 37) GTGGGATGATAACCACTACACTAACCGCCC 1 chrXIV:96072-96515 ( 40) GTGGGATGATAACCACTACACTAACCGCCC 1 chrIV:1256901-1257284 ( 8) CATGAATTCTAACCACTGAACCACTTTCGC 1 chrX:541350-541703 ( 32) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrX:204542-204936 ( 46) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrXII:793707-794160 ( 35) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrVII:544422-544862 ( 27) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrX:374233-374765 ( 17) CGCCCATTCTGACCATTAAACTATCACGGA 1 chrX:517687-518052 ( 36) CCCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrV:99928-100328 ( 55) CCCTGCGCGCTTCCACTGCGCCACGGCGCT 1 chrX:354049-354438 ( 51) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrXIII:168619-169056 ( 8) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrIV:946081-946577 ( 33) TGCGCCTTAAACCAACTTGGCTACCGAGAG 1 chrVII:878583-879017 ( 36) TCGAAAGCTCTACCATTGAGCCACCGCTTC 1 chrX:415819-416231 ( 32) TCGAAAGCTCTACCATTGAGCCACCGCTTC 1 chrVII:287205-287642 ( 53) TCGAAAGCTCTACCATTGAGCCACCGCTTC 1 chrXIII:379182-379602 ( 37) TCGAAAGCTCTACCATTGAGCCACCGCTTC 1 chrXII:818457-818812 ( 25) AATGCATGCTAACCATTGCACTAGAGGAGC 1 chrVIII:475560-475960 ( 39) GCAACGTGATAGCCGCTACACTATTGGAAC 1 chrIV:1075333-1075730 ( 34) GCAACGTGATAGCCGCTACACTATTGGAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGDNSSCYYTAMCCACTRVGCCAHNVRVSC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 42032 bayes= 8.41717 E= 6.1e-272 -148 130 -6 -48 -113 21 130 -103 19 -22 55 -62 6 -14 39 -29 -62 121 82 -1330 -103 78 127 -294 -194 152 -31 -62 -235 55 1 59 -135 64 -61 55 -24 -114 -431 108 87 -272 -40 -18 76 101 -150 -394 -1330 235 -1330 -1330 -48 162 -40 -335 165 -1330 -199 -1330 -1330 192 -1330 -24 -1330 -1330 -1330 172 27 -40 94 -148 -3 60 105 -1330 6 -1330 180 -1330 -1330 235 -1330 -1330 -1330 184 -1330 -3 172 -1330 -1330 -1330 11 108 -431 -29 -24 60 44 -77 2 15 78 -113 19 -14 108 -235 31 1 82 -194 -135 86 121 -213 -135 208 -272 -394 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGDNSSCYYTAMCCACTRVGCCAHNVRVSC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 101 E= 6.1e-272 0.108911 0.485149 0.188119 0.217822 0.138614 0.227723 0.485149 0.148515 0.346535 0.168317 0.287129 0.198020 0.316832 0.178218 0.257426 0.247525 0.198020 0.455446 0.346535 0.000000 0.148515 0.336634 0.475248 0.039604 0.079208 0.564356 0.158416 0.198020 0.059406 0.287129 0.198020 0.455446 0.118812 0.306931 0.128713 0.445545 0.257426 0.089109 0.009901 0.643564 0.554455 0.029703 0.148515 0.267327 0.514851 0.396040 0.069307 0.019802 0.000000 1.000000 0.000000 0.000000 0.217822 0.603960 0.148515 0.029703 0.950495 0.000000 0.049505 0.000000 0.000000 0.742574 0.000000 0.257426 0.000000 0.000000 0.000000 1.000000 0.366337 0.148515 0.376238 0.108911 0.297030 0.297030 0.405941 0.000000 0.316832 0.000000 0.683168 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.702970 0.000000 0.297030 1.000000 0.000000 0.000000 0.000000 0.326733 0.415842 0.009901 0.247525 0.257426 0.297030 0.267327 0.178218 0.306931 0.217822 0.336634 0.138614 0.346535 0.178218 0.415842 0.059406 0.376238 0.198020 0.346535 0.079208 0.118812 0.356436 0.455446 0.069307 0.118812 0.831683 0.029703 0.019802 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGDNSSCYYTAMCCACTRVGCCAHNVRVSC MEME-1 regular expression -------------------------------------------------------------------------------- [CT][GC][AG][AGT][CG][GC]C[TC][TC][TA][AT][AC]C[CA]A[CT]T[GA][GAC][GA]C[CT]A[CAT][CGA][GAC][GA][AG][GC]C -------------------------------------------------------------------------------- Time 348.63 secs. ******************************************************************************** ******************************************************************************** MOTIF GRRTCGAACCSVKGAYCTYMHGATT MEME-2 width = 25 sites = 46 llr = 880 E-value = 6.7e-151 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRRTCGAACCSVKGAYCTYMHGATT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :44:::aa:::3:38:1:132:6:1 pos.-specific C ::2:8:::a7622::68335332:: probability G a63::a::::44471:1::117222 matrix T ::2a2::::3::4:14:7623::87 bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 * * **** Relative 1.4 * ****** * * Entropy 1.2 * ******** * ** * (27.6 bits) 0.9 ** ******** * *** * * 0.7 ** ******** ***** * ** 0.5 ** **************** **** 0.2 ** ********************** 0.0 ------------------------- Multilevel GGATCGAACCCGTGACCTTCCGATT consensus AG TGAGA T CCATCC sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTCGAACCSVKGAYCTYMHGATT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------- chrVII:405362-405711 - 19 5.71e-12 CTCACGATGG GGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrXI:162307-162734 + 29 5.71e-12 CTCACGATGG GGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrX:374233-374765 + 69 5.71e-12 CTCACGATGG GGGTCGAACCCATAATCTTCTGATT AGAAGTC chrXIII:747714-748164 + 15 5.71e-12 CTCACGATGG GGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrII:405686-406137 - 52 5.71e-12 CTCACGATGG GGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrIV:568693-569166 - 38 5.71e-12 CTCACGATGG GGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrVII:185584-185935 + 17 1.52e-11 CCCTGTAGGG GGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrVII:122079-122495 - 68 1.52e-11 CTGTAGGG GGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrV:135268-135688 + 9 1.52e-11 CTGTAGGG GGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrXVI:880073-880575 + 34 8.22e-11 GTCTCTAGCG GGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrXVI:819318-819819 - 48 8.22e-11 GTCTCTAGCG GGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrI:166090-166516 - 50 1.06e-10 GACGCAACCG GAATCGAACCGATGACCTCTTCCTT GCAAGGGAAG chrV:438542-438884 - 74 3.07e-10 CA GGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrXIII:372300-372632 + 41 3.07e-10 ATTTCGCCCA GGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrV:469275-469667 - 73 3.07e-10 CCA GGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrXIII:420446-420845 + 5 3.07e-10 CCCA GGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrVIII:475560-475960 + 8 3.43e-10 CAACCGA GGATCGAACTCGGGACCTTTGCCGT GTGAAGGCAA chrIV:1075333-1075730 + 3 3.43e-10 GA GGATCGAACTCGGGACCTTTGCCGT GTGAAGGCAA chrIV:488561-489079 + 39 3.43e-10 ATCCAACCGA GGTTCGAACTCGGGATCTTCGCCGT GTAAAGGCGA chrXV:976302-976670 - 21 4.26e-10 CTCCAGGGGA GGTTCGAACTCTCGACCTTCAGATT ATGAGACTGA chrIV:1175667-1176041 - 61 4.26e-10 CTCCAGGGGA GGTTCGAACTCTCGACCTTCAGATT ATGAGACTGA chrV:61646-62146 + 56 5.85e-10 CGCAAGCCCG GAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrVII:845453-845877 - 68 5.85e-10 CAAGCCCG GAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrXV:281965-282383 - 74 5.85e-10 CG GAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrIV:992643-993041 - 74 5.85e-10 CG GAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrX:538380-538750 - 75 6.49e-10 G GACTCGAACCCGCAGTCTTCTCCTT AGGAGGGAGA chrVI:137332-137742 + 11 6.49e-10 ACCCCAGTGA GGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrXIV:102507-102998 - 51 6.49e-10 ACCCCAGTGA GGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrVII:730948-731362 - 69 6.49e-10 CCAGTGA GGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrXIV:104635-105041 - 53 1.07e-09 CTTCCAATCG GATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrII:266195-266621 - 56 1.07e-09 CTTCCAATCG GATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrIV:434052-434495 + 53 1.07e-09 CTTCCAATCG GATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrVIII:115945-116377 + 8 1.07e-09 CCAATCG GATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrIV:1095190-1095648 + 13 1.72e-09 CGAACTCTGT GGATCGAACACAGGACCTCCAGATA TCTTGACCAA chrXIII:168619-169056 - 60 2.26e-09 TCCCGGGGGC GAGTCGAACGCCCGATCTCAAGATT TCGTAGTGAT chrXII:875198-875631 - 71 2.94e-09 TAGGG GGCTCGAACCCCTGACATTTCGGTA TCCTTGCTTA chrXV:438460-438986 - 29 2.94e-09 CCTCATAGGG GGCTCGAACCCCTGACATTTCGGTA TCCTTGCTTA chrVII:779428-779831 - 72 3.49e-09 ACGA GAATCGAACCCGTGTCCCCACCTTG GAAGGGTGGG chrXIV:96072-96515 + 10 3.49e-09 GCGGTACGA GAATCGAACCCGTGTCCCCACCTTG GAAGGGTGGG chrXII:374158-374639 - 43 4.86e-09 TCCCCGCCAG GACTTGAACCTGGAATCTTCTGGTT CGTAGCCAGA chrXI:140874-141282 + 2 7.81e-09 G GAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrVII:541650-542109 - 56 7.81e-09 CCGATACGGG GAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrXVI:55911-56482 + 35 8.42e-09 AAACGGACAG GAATTGAACCTGCAACCCTTCGATT GCAATCTTAT chrXII:656789-657184 + 10 1.73e-08 ACGAGTCCG GAATCGAACCGGAGACCTCTCCCAT GCTAAGGGAG chrX:517687-518052 + 6 1.47e-07 GCTCG GTTTCGATCCGAGGACATCAGGGTT ATGAGCCCTG chrXII:818457-818812 - 60 6.02e-07 CTCCTCCCGG GACTCGAACCCGGATCACAGCCACC GGAAGAATGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTCGAACCSVKGAYCTYMHGATT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:405362-405711 5.7e-12 18_[-2]_57 chrXI:162307-162734 5.7e-12 28_[+2]_47 chrX:374233-374765 5.7e-12 68_[+2]_7 chrXIII:747714-748164 5.7e-12 14_[+2]_61 chrII:405686-406137 5.7e-12 51_[-2]_24 chrIV:568693-569166 5.7e-12 37_[-2]_38 chrVII:185584-185935 1.5e-11 16_[+2]_59 chrVII:122079-122495 1.5e-11 67_[-2]_8 chrV:135268-135688 1.5e-11 8_[+2]_67 chrXVI:880073-880575 8.2e-11 33_[+2]_42 chrXVI:819318-819819 8.2e-11 47_[-2]_28 chrI:166090-166516 1.1e-10 49_[-2]_26 chrV:438542-438884 3.1e-10 73_[-2]_2 chrXIII:372300-372632 3.1e-10 40_[+2]_35 chrV:469275-469667 3.1e-10 72_[-2]_3 chrXIII:420446-420845 3.1e-10 4_[+2]_71 chrVIII:475560-475960 3.4e-10 7_[+2]_68 chrIV:1075333-1075730 3.4e-10 2_[+2]_73 chrIV:488561-489079 3.4e-10 38_[+2]_37 chrXV:976302-976670 4.3e-10 20_[-2]_55 chrIV:1175667-1176041 4.3e-10 60_[-2]_15 chrV:61646-62146 5.9e-10 55_[+2]_20 chrVII:845453-845877 5.9e-10 67_[-2]_8 chrXV:281965-282383 5.9e-10 73_[-2]_2 chrIV:992643-993041 5.9e-10 73_[-2]_2 chrX:538380-538750 6.5e-10 74_[-2]_1 chrVI:137332-137742 6.5e-10 10_[+2]_65 chrXIV:102507-102998 6.5e-10 50_[-2]_25 chrVII:730948-731362 6.5e-10 68_[-2]_7 chrXIV:104635-105041 1.1e-09 52_[-2]_23 chrII:266195-266621 1.1e-09 55_[-2]_20 chrIV:434052-434495 1.1e-09 52_[+2]_23 chrVIII:115945-116377 1.1e-09 7_[+2]_68 chrIV:1095190-1095648 1.7e-09 12_[+2]_63 chrXIII:168619-169056 2.3e-09 59_[-2]_16 chrXII:875198-875631 2.9e-09 70_[-2]_5 chrXV:438460-438986 2.9e-09 28_[-2]_47 chrVII:779428-779831 3.5e-09 71_[-2]_4 chrXIV:96072-96515 3.5e-09 9_[+2]_66 chrXII:374158-374639 4.9e-09 42_[-2]_33 chrXI:140874-141282 7.8e-09 1_[+2]_74 chrVII:541650-542109 7.8e-09 55_[-2]_20 chrXVI:55911-56482 8.4e-09 34_[+2]_41 chrXII:656789-657184 1.7e-08 9_[+2]_66 chrX:517687-518052 1.5e-07 5_[+2]_70 chrXII:818457-818812 6e-07 59_[-2]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTCGAACCSVKGAYCTYMHGATT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRRTCGAACCSVKGAYCTYMHGATT width=25 seqs=46 chrVII:405362-405711 ( 19) GGGTCGAACCCATAATCTTCTGATT 1 chrXI:162307-162734 ( 29) GGGTCGAACCCATAATCTTCTGATT 1 chrX:374233-374765 ( 69) GGGTCGAACCCATAATCTTCTGATT 1 chrXIII:747714-748164 ( 15) GGGTCGAACCCATAATCTTCTGATT 1 chrII:405686-406137 ( 52) GGGTCGAACCCATAATCTTCTGATT 1 chrIV:568693-569166 ( 38) GGGTCGAACCCATAATCTTCTGATT 1 chrVII:185584-185935 ( 17) GGCTCGAACCCCTAACCTTATGATT 1 chrVII:122079-122495 ( 68) GGCTCGAACCCCTAACCTTATGATT 1 chrV:135268-135688 ( 9) GGCTCGAACCCCTAACCTTATGATT 1 chrXVI:880073-880575 ( 34) GGATCGAACCGCTGATCCCCGCGTT 1 chrXVI:819318-819819 ( 48) GGATCGAACCGCTGATCCCCGCGTT 1 chrI:166090-166516 ( 50) GAATCGAACCGATGACCTCTTCCTT 1 chrV:438542-438884 ( 74) GGATCGAACTGGGGACGTTCTGCGT 1 chrXIII:372300-372632 ( 41) GGATCGAACTGGGGACGTTCTGCGT 1 chrV:469275-469667 ( 73) GGATCGAACTGGGGACGTTCTGCGT 1 chrXIII:420446-420845 ( 5) GGATCGAACTGGGGACGTTCTGCGT 1 chrVIII:475560-475960 ( 8) GGATCGAACTCGGGACCTTTGCCGT 1 chrIV:1075333-1075730 ( 3) GGATCGAACTCGGGACCTTTGCCGT 1 chrIV:488561-489079 ( 39) GGTTCGAACTCGGGATCTTCGCCGT 1 chrXV:976302-976670 ( 21) GGTTCGAACTCTCGACCTTCAGATT 1 chrIV:1175667-1176041 ( 61) GGTTCGAACTCTCGACCTTCAGATT 1 chrV:61646-62146 ( 56) GAATCGAACCGGGGGCCCAACGATG 1 chrVII:845453-845877 ( 68) GAATCGAACCGGGGGCCCAACGATG 1 chrXV:281965-282383 ( 74) GAATCGAACCGGGGGCCCAACGATG 1 chrIV:992643-993041 ( 74) GAATCGAACCGGGGGCCCAACGATG 1 chrX:538380-538750 ( 75) GACTCGAACCCGCAGTCTTCTCCTT 1 chrVI:137332-137742 ( 11) GGGTTGAACTCACGATCTTGCGATT 1 chrXIV:102507-102998 ( 51) GGGTTGAACTCACGATCTTGCGATT 1 chrVII:730948-731362 ( 69) GGGTTGAACTCACGATCTTGCGATT 1 chrXIV:104635-105041 ( 53) GATTTGAACCGATGATCTCCACATT 1 chrII:266195-266621 ( 56) GATTTGAACCGATGATCTCCACATT 1 chrIV:434052-434495 ( 53) GATTTGAACCGATGATCTCCACATT 1 chrVIII:115945-116377 ( 8) GATTTGAACCGATGATCTCCACATT 1 chrIV:1095190-1095648 ( 13) GGATCGAACACAGGACCTCCAGATA 1 chrXIII:168619-169056 ( 60) GAGTCGAACGCCCGATCTCAAGATT 1 chrXII:875198-875631 ( 71) GGCTCGAACCCCTGACATTTCGGTA 1 chrXV:438460-438986 ( 29) GGCTCGAACCCCTGACATTTCGGTA 1 chrVII:779428-779831 ( 72) GAATCGAACCCGTGTCCCCACCTTG 1 chrXIV:96072-96515 ( 10) GAATCGAACCCGTGTCCCCACCTTG 1 chrXII:374158-374639 ( 43) GACTTGAACCTGGAATCTTCTGGTT 1 chrXI:140874-141282 ( 2) GAGTCGAACCCCGGTCTCCACGGTG 1 chrVII:541650-542109 ( 56) GAGTCGAACCCCGGTCTCCACGGTG 1 chrXVI:55911-56482 ( 35) GAATTGAACCTGCAACCCTTCGATT 1 chrXII:656789-657184 ( 10) GAATCGAACCGGAGACCTCTCCCAT 1 chrX:517687-518052 ( 6) GTTTCGATCCGAGGACATCAGGGTT 1 chrXII:818457-818812 ( 60) GACTCGAACCCGGATCACAGCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTCGAACCSVKGAYCTYMHGATT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 44992 bayes= 8.6516 E= 6.7e-151 -1217 -1217 235 -1217 44 -1217 152 -380 37 -18 41 -80 -1217 -1217 -1217 172 -1217 203 -1217 -63 -1217 -1217 235 -1217 172 -1217 -1217 -1217 169 -1217 -1217 -380 -1217 235 -1217 -1217 -380 182 -317 -22 -1217 158 91 -280 20 15 99 -280 -380 -18 91 52 -10 -1217 187 -1217 137 -1217 -85 -148 -1217 158 -1217 44 -180 199 -118 -280 -1217 41 -1217 128 -148 73 -1217 90 -10 128 -118 -100 -80 82 -59 20 -1217 73 178 -1217 90 15 -18 -280 -380 -317 -37 141 -222 -317 -18 128 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTCGAACCSVKGAYCTYMHGATT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 46 E= 6.7e-151 0.000000 0.000000 1.000000 0.000000 0.413043 0.000000 0.565217 0.021739 0.391304 0.173913 0.260870 0.173913 0.000000 0.000000 0.000000 1.000000 0.000000 0.804348 0.000000 0.195652 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.978261 0.000000 0.000000 0.021739 0.000000 1.000000 0.000000 0.000000 0.021739 0.695652 0.021739 0.260870 0.000000 0.586957 0.369565 0.043478 0.347826 0.217391 0.391304 0.043478 0.021739 0.173913 0.369565 0.434783 0.282609 0.000000 0.717391 0.000000 0.782609 0.000000 0.108696 0.108696 0.000000 0.586957 0.000000 0.413043 0.086957 0.782609 0.086957 0.043478 0.000000 0.260870 0.000000 0.739130 0.108696 0.326087 0.000000 0.565217 0.282609 0.478261 0.086957 0.152174 0.173913 0.347826 0.130435 0.347826 0.000000 0.326087 0.673913 0.000000 0.565217 0.217391 0.173913 0.043478 0.021739 0.021739 0.152174 0.804348 0.065217 0.021739 0.173913 0.739130 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTCGAACCSVKGAYCTYMHGATT MEME-2 regular expression -------------------------------------------------------------------------------- G[GA][AG]TCGAAC[CT][CG][GAC][TG][GA]A[CT]C[TC][TC][CA][CT][GC][AC]TT -------------------------------------------------------------------------------- Time 651.96 secs. ******************************************************************************** ******************************************************************************** MOTIF RRATGTAYGGRTGTW MEME-3 width = 15 sites = 80 llr = 931 E-value = 1.4e-083 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRATGTAYGGRTGTW MEME-3 Description -------------------------------------------------------------------------------- Simplified A 557:::8:1:6:::5 pos.-specific C 1::::2:6:::::31 probability G 3422a:1:9a4:a11 matrix T 21:8:814:::a:63 bits 2.3 * * 2.1 * * 1.9 * * * 1.6 * ** * Relative 1.4 * ** ** Entropy 1.2 ** ** ** (16.8 bits) 0.9 *** ****** 0.7 *********** 0.5 ************* 0.2 *************** 0.0 --------------- Multilevel AAATGTACGGATGTA consensus GGGG C T G CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRATGTAYGGRTGTW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrXII:932085-932499 + 32 3.40e-09 ACAGATGTAC GGATGTACGGATGTA TACTATGTAA chrXIII:225349-225728 - 56 1.35e-08 ATAAAAAATA GAATGTACGGATGTA ATGCACGGAT chrXV:1028706-1029114 + 46 2.48e-08 TAAACAAATC AAATGTACGGATGCA CAATGGTAAA chrXI:108733-109078 - 65 3.42e-08 GGAGCCAACT AAATGTACGGATGTT GTAATGTGTT chrII:45005-45346 - 44 3.42e-08 AACATACATA GAATGTACGGATGCA TGATTGTCTC chrXVI:378674-378960 + 72 4.14e-08 ATGAGAACTC GAATGTACGGATGTT TTCTCTGAAT chrV:396200-396573 - 42 4.80e-08 GGGTTCACAA AAGTGTACGGATGTA TACAACAGGG chrVIII:125918-126305 - 40 4.80e-08 GTAAAGATGT AGGTGTACGGATGCA TTAACGTCTT chrI:81960-82233 + 63 9.15e-08 CATCTAGCGG AGGTGCACGGATGTA CCAACAGTTT chrIX:68217-68517 - 32 9.15e-08 TACATCTTAG TAATGTACGGATGTA ATAAACTCAA chrXII:781454-781868 + 44 1.06e-07 GGGTTTATGA AAATGCACGGATGCA TTTTCTCTAG chrIV:1359395-1359797 - 49 1.06e-07 CATGGGTGCG TGATGTACGGATGTT TAATGTCTTT chrVII:534795-535217 + 47 1.06e-07 TGGGTTACAC AAATGCACGGATGCA AATATAAAAT chrXII:241634-242008 - 35 1.28e-07 TTTACATTTT ATATGTACGGATGTA AAAAGGGAAA chrVIII:505823-506197 + 40 1.51e-07 TGTCTGGGTG AAATGTATGGATGCA TAATTGTCTC chrXVI:406165-406544 - 66 1.77e-07 TTGGAGGTGG AAAGGTACGGATGTT AAACTTCATA chrII:415507-415838 + 60 2.05e-07 CTGGATGACA AAATGCATGGGTGTA AAAAAGGAAA chrIV:341287-341605 + 46 2.05e-07 CTGGGTGTTA AAATGTACGGATGGA AAAGTAGACT chrIV:221976-222308 + 42 2.35e-07 AATGAGATAA GGGTGTACGGGTGTG GTAACCGTCG chrVII:555339-555691 - 44 2.35e-07 CAAACACTTT TAATGCACGGGTGTA AAAGGGATGT chrXV:79765-80130 + 50 2.35e-07 CACTTATTTA ATATGTACGGGTGTT TACATGGAGT chrIV:130580-130966 + 25 2.72e-07 GAAAGCTATA AAATGTGCGGATGTT TGTATATGTC chrXVI:731923-732305 - 39 2.72e-07 CAACCATCCT AAAGGTATGGGTGTA CTGACGATGC chrXII:796427-796837 + 51 2.72e-07 TTATTATCCA GGAGGCACGGATGCA AAAGATAGAA chrXIV:63117-63479 + 69 3.13e-07 TGGGTTGCTA AAATGTTCGGATGTA AAGTAGTATT chrXV:92943-93302 + 39 3.55e-07 CGAACGTCAC ATGTGTACGGATGTA GTTGTGTCAT chrXIV:444475-444773 + 46 3.99e-07 ACGGATTTAA AGAGGTACGGATGGA GACCGTAGAA chrII:605721-606134 - 38 3.99e-07 GTGATGGTGA AGATGTACAGGTGTA AAACTGTCAG chrV:305778-306197 - 47 3.99e-07 GTGGGCTTGT AAATGTGTGGGTGTA CAGTCCCGAT chrX:703261-703622 + 59 4.60e-07 AATAAATAGT GGATGCATGGGTGCT TCCACGCGTC chrVII:149118-149522 + 47 5.24e-07 ATGTATGGGT GGGTGTATGGATGCT GTAAGCACAG chrVII:254122-254562 + 54 5.24e-07 ACATCTTTCA ATATGCACGGGTGCA ACCTCAAATA chrXIII:732046-732403 - 31 5.84e-07 CACACATGCG CGATGTGCGGATGTA TTATGTCTTG chrVI:221770-222070 + 49 7.34e-07 TGGGTGTTAA AAATGTACGGGTGAA AAAAGTCTTA chrVII:788331-788730 + 48 7.34e-07 TGGGTTTAGA GTATGCACGGATGTT GTAAGGAATA chrXII:713159-713569 + 57 7.34e-07 TTTTTTATAC ATATGTACGGATGTG ATAGTCTGCA chrV:140485-140877 + 43 8.28e-07 CGGCATTGTA AAAGGTATGGGTGCT TTGTGCGTCC chrXI:618811-619212 + 49 9.24e-07 CAAATCTATT AGAGGCACGGATGGA AATAGTATTT chrII:477024-477458 - 23 9.24e-07 GGTGCAACAT GAATGTACGGAGGTA GTTTGCTGAT chrVII:438580-438908 + 63 1.13e-06 TAACGTTCCA AAATGTATGGATGGT AAGGTCTTTT chrV:423106-423473 - 32 1.13e-06 TGGGTGTAGA AGGTGTACGGAGGTA AATATGCAGC chrXII:922112-922578 - 49 1.13e-06 GAGAATTGGA ATATGTACGGGTGTC AATTTCAAAC chrIII:178355-178633 + 27 1.26e-06 AAGAGTAGTA AAATGTACAGATGTT TATTAAGTCC chrXIII:754444-754772 + 13 1.40e-06 ACGCTATTCT GGATGTATGGGGGTA TTTTATGTCT chrVIII:382914-383329 + 46 1.70e-06 TGGGTGTCTC GGATGTTCGGATGTC ACTGTCTTTT chrVII:726436-726765 - 53 1.88e-06 TATTTAAAAA TAGGGTATGGGTGTA TATAGGGTAT chrIV:1300927-1301316 - 37 1.88e-06 CAAACATCCA CAGTGCACGGATGTT TGAAGGAAAA chrII:60860-61257 + 64 1.88e-06 AAGCAGTTGG GGGTGTACAGATGTT AATGTAGTCT chrXII:897712-898030 - 39 2.07e-06 TGGGTTTTTT GGAGGTACAGGTGTT GTAGAATTCT chrXV:866558-866943 - 37 2.07e-06 TACAAACCCA GAATGCTTGGATGTA GGGAAAAAAT chrX:75360-75725 + 25 2.27e-06 TTTCAAATAG TGAGGTGTGGATGTA TAGAGAAATT chrV:53531-53919 + 59 2.27e-06 CACACATATT TGGTGTTCGGATGTT AAACAGGGTA chrXV:216266-216668 - 41 2.49e-06 CTGGGTTGAG GAAGGCGCGGGTGCT CGGATGTTCC chrXIII:551370-551797 - 85 3.28e-06 A TAATGTATGGGTGCC AATATGTACT chrII:332322-332741 - 43 3.28e-06 TTGGGTTTAG AATTGTATGGGTGCA GCAAGGAAAT chrVI:95489-95822 + 30 3.91e-06 ATACGCAATC CGGTGTGTGGGTGCA TGACTGATTG chrIX:99649-100022 + 24 3.91e-06 TTTCATGAAT AAATGTACTGGTGTT ACATGGTGTA chrIV:308000-308386 - 80 3.91e-06 CTGCAT ATATGTAAGGATGTA ACAGGAAATG chrVII:310498-310898 - 37 4.27e-06 TGTGGGTCCC TGGTGTACAGATGTT ACATTGGTTA chrVII:648958-649362 + 38 4.66e-06 TATGGGTTCT CGTTGTACGGATGTT TAAAATGTCC chrXIV:495209-495589 + 28 5.05e-06 AATTTTTAAA GGAGGTTTGGGTGTG TATAGTGTAC chrIV:1401266-1401586 - 56 5.99e-06 AAAGGGTAAT ATATGTGTGGGTGGA AAATGATTGG chrXVI:76365-76741 + 39 5.99e-06 ACACATCCGT GGATGTACAGGTGAA AATACAGTCA chrX:90059-90444 - 45 5.99e-06 GTATGGGTGA GAATGTTCAGGTGCA AATTTAAAAG chrIII:163475-163866 + 26 6.50e-06 AGCCGCGGTT GGGTGCGTGGGTGCG GTAATTTAAC chrIV:466740-467177 + 19 7.05e-06 TAATGCCACT AGAGGTTTGGATGCG TCTACGGCCT chrX:73415-73761 - 43 7.63e-06 CTTTTCAGTG TGGTGCAAGGATGTA AAATGATGTG chrXV:505116-505488 - 66 8.26e-06 ATACCATATC ATATGTTTGGGTGTG ATAAGGTTCA chrXII:1028243-1028557 - 47 1.52e-05 CCATACATTT TGGTGCATGGGTGAT ATTTTGTCTT chrXII:401906-402272 + 71 1.76e-05 CTCAGTTAGA AGATGCACTGATGGT TATGCCATTC chrX:651285-651579 - 38 1.76e-05 GAATAATTAT GGGTATATGGGTGTT GTTGTATAAA chrIV:117171-117577 - 61 1.76e-05 ATAAATGTAA AAAGTTATGGGTGTA GATATGTATG chrIX:257386-257692 - 15 2.32e-05 ACATACAATG TGTTGTTTGGGTGTT TTCCTTTCAG chrIII:220386-220970 + 57 2.65e-05 TTGATACCAA AAATCTATAGGTGTA TTTGTTATCA chrXV:281965-282383 + 8 2.65e-05 CTTAAAT AGAGGAGTGGATGCT CAGGATAACA chrIV:835790-836148 - 31 2.65e-05 TGTGCGGTTG CGGGGCGTGGGTGTG CGCGCCGTTG chrIV:1268941-1269451 - 11 2.84e-05 CAACTGGTTC GGATGAGTGGATGTC GCCTGCTTCA chrIX:316128-316596 - 39 3.67e-05 GTTTGTAAAA TAATGTATGGGTTCT AGTCTGAAAA chrVIII:444802-445386 - 58 5.31e-05 TCTTGAATTG TAATCTAAGGATGCA TCGATATCTT chrXI:42805-43071 - 54 5.98e-05 AATTAAAATA GACGGTACGGACGTA AATGACTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRATGTAYGGRTGTW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:932085-932499 3.4e-09 31_[+3]_54 chrXIII:225349-225728 1.3e-08 55_[-3]_30 chrXV:1028706-1029114 2.5e-08 45_[+3]_40 chrXI:108733-109078 3.4e-08 64_[-3]_21 chrII:45005-45346 3.4e-08 43_[-3]_42 chrXVI:378674-378960 4.1e-08 71_[+3]_14 chrV:396200-396573 4.8e-08 41_[-3]_44 chrVIII:125918-126305 4.8e-08 39_[-3]_46 chrI:81960-82233 9.1e-08 62_[+3]_23 chrIX:68217-68517 9.1e-08 31_[-3]_54 chrXII:781454-781868 1.1e-07 43_[+3]_42 chrIV:1359395-1359797 1.1e-07 48_[-3]_37 chrVII:534795-535217 1.1e-07 46_[+3]_39 chrXII:241634-242008 1.3e-07 34_[-3]_51 chrVIII:505823-506197 1.5e-07 39_[+3]_46 chrXVI:406165-406544 1.8e-07 65_[-3]_20 chrII:415507-415838 2e-07 59_[+3]_26 chrIV:341287-341605 2e-07 45_[+3]_40 chrIV:221976-222308 2.3e-07 41_[+3]_44 chrVII:555339-555691 2.3e-07 43_[-3]_42 chrXV:79765-80130 2.3e-07 49_[+3]_36 chrIV:130580-130966 2.7e-07 24_[+3]_61 chrXVI:731923-732305 2.7e-07 38_[-3]_47 chrXII:796427-796837 2.7e-07 50_[+3]_35 chrXIV:63117-63479 3.1e-07 68_[+3]_17 chrXV:92943-93302 3.5e-07 38_[+3]_47 chrXIV:444475-444773 4e-07 45_[+3]_40 chrII:605721-606134 4e-07 37_[-3]_48 chrV:305778-306197 4e-07 46_[-3]_39 chrX:703261-703622 4.6e-07 58_[+3]_27 chrVII:149118-149522 5.2e-07 46_[+3]_39 chrVII:254122-254562 5.2e-07 53_[+3]_32 chrXIII:732046-732403 5.8e-07 30_[-3]_55 chrVI:221770-222070 7.3e-07 48_[+3]_37 chrVII:788331-788730 7.3e-07 47_[+3]_38 chrXII:713159-713569 7.3e-07 56_[+3]_29 chrV:140485-140877 8.3e-07 42_[+3]_43 chrXI:618811-619212 9.2e-07 48_[+3]_37 chrII:477024-477458 9.2e-07 22_[-3]_63 chrVII:438580-438908 1.1e-06 62_[+3]_23 chrV:423106-423473 1.1e-06 31_[-3]_54 chrXII:922112-922578 1.1e-06 48_[-3]_37 chrIII:178355-178633 1.3e-06 26_[+3]_59 chrXIII:754444-754772 1.4e-06 12_[+3]_73 chrVIII:382914-383329 1.7e-06 45_[+3]_40 chrVII:726436-726765 1.9e-06 52_[-3]_33 chrIV:1300927-1301316 1.9e-06 36_[-3]_49 chrII:60860-61257 1.9e-06 63_[+3]_22 chrXII:897712-898030 2.1e-06 38_[-3]_47 chrXV:866558-866943 2.1e-06 36_[-3]_49 chrX:75360-75725 2.3e-06 24_[+3]_61 chrV:53531-53919 2.3e-06 58_[+3]_27 chrXV:216266-216668 2.5e-06 40_[-3]_45 chrXIII:551370-551797 3.3e-06 84_[-3]_1 chrII:332322-332741 3.3e-06 42_[-3]_43 chrVI:95489-95822 3.9e-06 29_[+3]_56 chrIX:99649-100022 3.9e-06 23_[+3]_62 chrIV:308000-308386 3.9e-06 79_[-3]_6 chrVII:310498-310898 4.3e-06 36_[-3]_49 chrVII:648958-649362 4.7e-06 37_[+3]_48 chrXIV:495209-495589 5.1e-06 27_[+3]_58 chrIV:1401266-1401586 6e-06 55_[-3]_30 chrXVI:76365-76741 6e-06 38_[+3]_47 chrX:90059-90444 6e-06 44_[-3]_41 chrIII:163475-163866 6.5e-06 25_[+3]_60 chrIV:466740-467177 7e-06 18_[+3]_67 chrX:73415-73761 7.6e-06 42_[-3]_43 chrXV:505116-505488 8.3e-06 65_[-3]_20 chrXII:1028243-1028557 1.5e-05 46_[-3]_39 chrXII:401906-402272 1.8e-05 70_[+3]_15 chrX:651285-651579 1.8e-05 37_[-3]_48 chrIV:117171-117577 1.8e-05 60_[-3]_25 chrIX:257386-257692 2.3e-05 14_[-3]_71 chrIII:220386-220970 2.7e-05 56_[+3]_29 chrXV:281965-282383 2.7e-05 7_[+3]_78 chrIV:835790-836148 2.7e-05 30_[-3]_55 chrIV:1268941-1269451 2.8e-05 10_[-3]_75 chrIX:316128-316596 3.7e-05 38_[-3]_47 chrVIII:444802-445386 5.3e-05 57_[-3]_28 chrXI:42805-43071 6e-05 53_[-3]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRATGTAYGGRTGTW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRATGTAYGGRTGTW width=15 seqs=80 chrXII:932085-932499 ( 32) GGATGTACGGATGTA 1 chrXIII:225349-225728 ( 56) GAATGTACGGATGTA 1 chrXV:1028706-1029114 ( 46) AAATGTACGGATGCA 1 chrXI:108733-109078 ( 65) AAATGTACGGATGTT 1 chrII:45005-45346 ( 44) GAATGTACGGATGCA 1 chrXVI:378674-378960 ( 72) GAATGTACGGATGTT 1 chrV:396200-396573 ( 42) AAGTGTACGGATGTA 1 chrVIII:125918-126305 ( 40) AGGTGTACGGATGCA 1 chrI:81960-82233 ( 63) AGGTGCACGGATGTA 1 chrIX:68217-68517 ( 32) TAATGTACGGATGTA 1 chrXII:781454-781868 ( 44) AAATGCACGGATGCA 1 chrIV:1359395-1359797 ( 49) TGATGTACGGATGTT 1 chrVII:534795-535217 ( 47) AAATGCACGGATGCA 1 chrXII:241634-242008 ( 35) ATATGTACGGATGTA 1 chrVIII:505823-506197 ( 40) AAATGTATGGATGCA 1 chrXVI:406165-406544 ( 66) AAAGGTACGGATGTT 1 chrII:415507-415838 ( 60) AAATGCATGGGTGTA 1 chrIV:341287-341605 ( 46) AAATGTACGGATGGA 1 chrIV:221976-222308 ( 42) GGGTGTACGGGTGTG 1 chrVII:555339-555691 ( 44) TAATGCACGGGTGTA 1 chrXV:79765-80130 ( 50) ATATGTACGGGTGTT 1 chrIV:130580-130966 ( 25) AAATGTGCGGATGTT 1 chrXVI:731923-732305 ( 39) AAAGGTATGGGTGTA 1 chrXII:796427-796837 ( 51) GGAGGCACGGATGCA 1 chrXIV:63117-63479 ( 69) AAATGTTCGGATGTA 1 chrXV:92943-93302 ( 39) ATGTGTACGGATGTA 1 chrXIV:444475-444773 ( 46) AGAGGTACGGATGGA 1 chrII:605721-606134 ( 38) AGATGTACAGGTGTA 1 chrV:305778-306197 ( 47) AAATGTGTGGGTGTA 1 chrX:703261-703622 ( 59) GGATGCATGGGTGCT 1 chrVII:149118-149522 ( 47) GGGTGTATGGATGCT 1 chrVII:254122-254562 ( 54) ATATGCACGGGTGCA 1 chrXIII:732046-732403 ( 31) CGATGTGCGGATGTA 1 chrVI:221770-222070 ( 49) AAATGTACGGGTGAA 1 chrVII:788331-788730 ( 48) GTATGCACGGATGTT 1 chrXII:713159-713569 ( 57) ATATGTACGGATGTG 1 chrV:140485-140877 ( 43) AAAGGTATGGGTGCT 1 chrXI:618811-619212 ( 49) AGAGGCACGGATGGA 1 chrII:477024-477458 ( 23) GAATGTACGGAGGTA 1 chrVII:438580-438908 ( 63) AAATGTATGGATGGT 1 chrV:423106-423473 ( 32) AGGTGTACGGAGGTA 1 chrXII:922112-922578 ( 49) ATATGTACGGGTGTC 1 chrIII:178355-178633 ( 27) AAATGTACAGATGTT 1 chrXIII:754444-754772 ( 13) GGATGTATGGGGGTA 1 chrVIII:382914-383329 ( 46) GGATGTTCGGATGTC 1 chrVII:726436-726765 ( 53) TAGGGTATGGGTGTA 1 chrIV:1300927-1301316 ( 37) CAGTGCACGGATGTT 1 chrII:60860-61257 ( 64) GGGTGTACAGATGTT 1 chrXII:897712-898030 ( 39) GGAGGTACAGGTGTT 1 chrXV:866558-866943 ( 37) GAATGCTTGGATGTA 1 chrX:75360-75725 ( 25) TGAGGTGTGGATGTA 1 chrV:53531-53919 ( 59) TGGTGTTCGGATGTT 1 chrXV:216266-216668 ( 41) GAAGGCGCGGGTGCT 1 chrXIII:551370-551797 ( 85) TAATGTATGGGTGCC 1 chrII:332322-332741 ( 43) AATTGTATGGGTGCA 1 chrVI:95489-95822 ( 30) CGGTGTGTGGGTGCA 1 chrIX:99649-100022 ( 24) AAATGTACTGGTGTT 1 chrIV:308000-308386 ( 80) ATATGTAAGGATGTA 1 chrVII:310498-310898 ( 37) TGGTGTACAGATGTT 1 chrVII:648958-649362 ( 38) CGTTGTACGGATGTT 1 chrXIV:495209-495589 ( 28) GGAGGTTTGGGTGTG 1 chrIV:1401266-1401586 ( 56) ATATGTGTGGGTGGA 1 chrXVI:76365-76741 ( 39) GGATGTACAGGTGAA 1 chrX:90059-90444 ( 45) GAATGTTCAGGTGCA 1 chrIII:163475-163866 ( 26) GGGTGCGTGGGTGCG 1 chrIV:466740-467177 ( 19) AGAGGTTTGGATGCG 1 chrX:73415-73761 ( 43) TGGTGCAAGGATGTA 1 chrXV:505116-505488 ( 66) ATATGTTTGGGTGTG 1 chrXII:1028243-1028557 ( 47) TGGTGCATGGGTGAT 1 chrXII:401906-402272 ( 71) AGATGCACTGATGGT 1 chrX:651285-651579 ( 38) GGGTATATGGGTGTT 1 chrIV:117171-117577 ( 61) AAAGTTATGGGTGTA 1 chrIX:257386-257692 ( 15) TGTTGTTTGGGTGTT 1 chrIII:220386-220970 ( 57) AAATCTATAGGTGTA 1 chrXV:281965-282383 ( 8) AGAGGAGTGGATGCT 1 chrIV:835790-836148 ( 31) CGGGGCGTGGGTGTG 1 chrIV:1268941-1269451 ( 11) GGATGAGTGGATGTC 1 chrIX:316128-316596 ( 39) TAATGTATGGGTTCT 1 chrVIII:444802-445386 ( 58) TAATCTAAGGATGCA 1 chrXI:42805-43071 ( 54) GACGGTACGGACGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRATGTAYGGRTGTW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 50912 bayes= 9.56342 E= 1.4e-083 68 -165 55 -90 57 -1297 111 -128 126 -397 20 -302 -1297 -1297 3 140 -460 -297 227 -460 -360 20 -1297 130 130 -1297 -51 -143 -302 161 -1297 26 -160 -1297 216 -360 -1297 -1297 235 -1297 95 -1297 107 -1297 -1297 -397 -239 165 -1297 -1297 233 -460 -302 42 -139 104 82 -197 -117 10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRATGTAYGGRTGTW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 80 E= 1.4e-083 0.487500 0.062500 0.287500 0.162500 0.450000 0.000000 0.425000 0.125000 0.725000 0.012500 0.225000 0.037500 0.000000 0.000000 0.200000 0.800000 0.012500 0.025000 0.950000 0.012500 0.025000 0.225000 0.000000 0.750000 0.750000 0.000000 0.137500 0.112500 0.037500 0.600000 0.000000 0.362500 0.100000 0.000000 0.875000 0.025000 0.000000 0.000000 1.000000 0.000000 0.587500 0.000000 0.412500 0.000000 0.000000 0.012500 0.037500 0.950000 0.000000 0.000000 0.987500 0.012500 0.037500 0.262500 0.075000 0.625000 0.537500 0.050000 0.087500 0.325000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRATGTAYGGRTGTW MEME-3 regular expression -------------------------------------------------------------------------------- [AG][AG][AG][TG]G[TC]A[CT]GG[AG]TG[TC][AT] -------------------------------------------------------------------------------- Time 955.30 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:459541-460112 7.37e-01 100 chrIX:316128-316596 2.86e-02 38_[-3(3.67e-05)]_47 chrII:477024-477458 4.04e-03 22_[-3(9.24e-07)]_4_[-3(6.54e-07)]_\ 44 chrXII:796427-796837 7.30e-04 50_[+3(2.72e-07)]_35 chrVII:254122-254562 1.09e-03 34_[-3(9.68e-06)]_4_[+3(5.24e-07)]_\ 32 chrVIII:382914-383329 3.35e-03 28_[+3(1.54e-06)]_2_[+3(1.70e-06)]_\ 40 chrXII:922112-922578 4.40e-03 48_[-3(1.13e-06)]_37 chrV:305778-306197 7.64e-04 46_[-3(3.99e-07)]_39 chrXII:932085-932499 1.24e-05 23_[+3(2.59e-09)]_18_[+3(2.72e-07)]_\ 29 chrXII:369277-370236 1.62e-01 100 chrXV:216266-216668 1.22e-03 32_[-3(1.88e-06)]_53 chrXII:713159-713569 2.00e-03 56_[+3(7.34e-07)]_29 chrVII:534795-535217 3.24e-04 46_[+3(1.06e-07)]_39 chrII:332322-332741 1.68e-02 42_[-3(3.28e-06)]_43 chrXIII:551370-551797 1.60e-02 8_[+3(7.96e-05)]_45_[-3(1.13e-05)]_\ 1_[-3(3.28e-06)]_1 chrVII:479161-482788 1.24e-01 100 chrVII:149118-149522 3.09e-03 46_[+3(5.24e-07)]_39 chrXII:460454-460750 5.89e-01 100 chrIV:1359395-1359797 1.21e-03 48_[-3(1.06e-07)]_37 chrIII:163475-163866 4.99e-03 25_[+3(6.50e-06)]_15_[+3(1.52e-05)]_\ 30 chrXII:781454-781868 6.28e-04 43_[+3(1.06e-07)]_42 chrXVI:699957-700350 2.42e-02 42_[-3(7.52e-05)]_43 chrIV:117171-117577 3.34e-02 60_[-3(1.76e-05)]_25 chrVII:788331-788730 2.28e-03 47_[+3(7.34e-07)]_38 chrV:140485-140877 3.70e-03 42_[+3(8.28e-07)]_22_[+3(1.64e-05)]_\ 6 chrIV:308000-308386 2.58e-03 79_[-3(3.91e-06)]_6 chrX:90059-90444 3.07e-02 44_[-3(5.99e-06)]_41 chrII:605721-606134 1.64e-04 37_[-3(3.99e-07)]_26_[+3(6.72e-05)]_\ 7 chrXI:618811-619212 5.65e-04 48_[+3(9.24e-07)]_37 chrII:60860-61257 8.18e-03 63_[+3(1.88e-06)]_22 chrXV:159240-160222 1.57e-02 100 chrXI:326082-327491 1.11e-01 100 chrII:680566-681881 1.28e-01 100 chrXV:866558-866943 5.57e-04 36_[-3(2.07e-06)]_3_[+3(1.04e-05)]_\ 31 chrXVI:731923-732305 3.63e-04 38_[-3(2.72e-07)]_47 chrVII:310498-310898 1.28e-02 36_[-3(4.27e-06)]_49 chrXIII:379182-379602 3.06e-04 36_[+1(1.55e-06)]_34 chrVIII:125918-126305 1.86e-04 39_[-3(4.80e-08)]_46 chrXIV:495209-495589 8.18e-03 27_[+3(5.05e-06)]_2_[+3(5.00e-05)]_\ 41 chrIV:130580-130966 1.38e-03 24_[+3(2.72e-07)]_61 chrIV:1300927-1301316 5.02e-03 36_[-3(1.88e-06)]_1_[+3(9.39e-05)]_\ 33 chrXV:505116-505488 2.69e-02 65_[-3(8.26e-06)]_20 chrX:121058-122717 8.48e-01 100 chrV:53531-53919 1.21e-02 42_[-3(7.63e-06)]_1_[+3(2.27e-06)]_\ 27 chrVII:648958-649362 1.87e-02 22_[+3(3.67e-05)]_[+3(4.66e-06)]_48 chrVII:882320-883141 2.38e-01 100 chrXIV:63117-63479 9.80e-04 68_[+3(3.13e-07)]_17 chrXVI:55911-56482 1.19e-05 34_[+2(8.42e-09)]_41 chrXIII:225349-225728 8.61e-05 55_[-3(1.35e-08)]_30 chrXVI:744081-744505 8.08e-09 40_[-1(2.82e-08)]_5_[-2(6.26e-07)] chrXVI:303183-304310 8.11e-01 100 chrXV:1028706-1029114 7.59e-05 19_[+3(3.67e-05)]_11_[+3(2.48e-08)]_\ 40 chrVIII:115945-116377 7.71e-12 7_[+2(1.07e-09)]_6_[+1(9.60e-10)]_\ 32 chrXV:28811-30973 1.08e-01 100 chrXIII:362863-363281 2.66e-01 100 chrXII:241634-242008 1.21e-03 34_[-3(1.28e-07)]_6_[-3(1.76e-05)]_\ 30 chrV:431014-431567 9.16e-02 100 chrXVI:76365-76741 7.64e-03 38_[+3(5.99e-06)]_47 chrXII:232082-234171 7.29e-01 100 chrXV:444638-446184 7.95e-01 100 chrX:390907-391330 4.37e-05 17_[+1(7.09e-09)]_53 chrXVI:860176-860590 2.08e-05 45_[-1(8.00e-09)]_25 chrXVI:769072-769518 6.20e-06 27_[+1(7.16e-10)]_43 chrVII:287205-287642 2.10e-03 52_[+1(1.55e-06)]_18 chrIV:434052-434495 1.21e-05 52_[+2(1.07e-09)]_23 chrIII:227758-228178 5.05e-06 23_[-1(7.16e-10)]_47 chrIV:915522-916307 6.17e-01 100 chrX:415819-416231 3.50e-04 31_[+1(1.55e-06)]_39 chrVII:738919-739323 1.09e-07 50_[-1(1.14e-11)]_20 chrXIV:442799-443290 1.89e-04 11_[-1(3.87e-08)]_59 chrXI:308017-308417 6.53e-05 20_[+1(2.82e-08)]_50 chrXII:366068-366477 5.19e-02 61_[+2(5.85e-05)]_14 chrX:703261-703622 2.44e-03 58_[+3(4.60e-07)]_27 chrX:422748-423136 2.32e-05 44_[-1(7.09e-09)]_26 chrVII:110420-110866 3.96e-02 43_[+2(1.48e-05)]_32 chrVII:700450-701240 8.68e-01 100 chrVIII:505823-506197 5.42e-04 39_[+3(1.51e-07)]_46 chrV:135268-135688 4.01e-14 8_[+2(1.52e-11)]_6_[+1(7.16e-10)]_\ 31 chrII:36181-36600 1.50e-04 57_[-1(3.87e-08)]_13 chrIX:99649-100022 2.46e-03 23_[+3(3.91e-06)]_62 chrXII:628191-628642 2.37e-04 16_[-1(3.87e-08)]_54 chrXV:79765-80130 1.06e-03 49_[+3(2.35e-07)]_36 chrXVI:435750-436164 4.40e-04 27_[+1(1.38e-07)]_43 chrII:266195-266621 7.71e-12 19_[-1(9.60e-10)]_6_[-2(1.07e-09)]_\ 20 chrV:434419-434804 5.89e-02 100 chrXII:731923-732301 4.87e-06 27_[-1(4.29e-09)]_43 chrX:75360-75725 9.87e-03 24_[+3(2.27e-06)]_27_[+3(1.04e-05)]_\ 19 chrXII:592393-592809 1.08e-05 38_[+1(4.29e-09)]_32 chrV:423106-423473 5.12e-03 31_[-3(1.13e-06)]_54 chrXIV:96072-96515 4.03e-10 9_[+2(3.49e-09)]_5_[+1(1.51e-07)]_\ 31 chrV:396200-396573 1.49e-04 41_[-3(4.80e-08)]_3_[-3(4.43e-05)]_\ 26 chrVII:730948-731362 4.92e-11 31_[-1(2.26e-08)]_7_[-2(6.49e-10)]_\ 7 chrIV:802583-803001 1.99e-09 [+2(1.86e-08)]_5_[+1(1.62e-08)]_40 chrXIII:290600-291006 1.23e-01 100 chrIV:1201540-1201966 6.27e-06 46_[-1(7.16e-10)]_24 chrIV:488561-489079 9.74e-11 38_[+2(3.43e-10)]_7_[+1(3.87e-08)] chrIV:946081-946577 3.59e-03 32_[-1(1.18e-06)]_38 chrVII:736120-736566 7.07e-05 46_[-1(4.30e-08)]_24 chrV:441802-442608 6.93e-01 100 chrVIII:237728-238135 5.72e-05 28_[+1(3.87e-08)]_42 chrVII:823275-823686 9.09e-05 51_[-1(2.82e-08)]_19 chrXV:274474-274921 1.08e-07 25_[-1(5.24e-11)]_45 chrXVI:819318-819819 1.33e-14 10_[-1(1.14e-11)]_7_[-2(8.22e-11)]_\ 28 chrX:233724-234151 3.79e-05 51_[-1(1.02e-08)]_19 chrXV:438460-438986 1.76e-05 28_[-2(2.94e-09)]_47 chrVIII:451349-453053 5.21e-01 100 chrXII:784151-784588 3.24e-07 34_[-1(5.24e-11)]_36 chrXII:448512-448914 1.93e-05 28_[+1(1.62e-08)]_42 chrXIII:288092-290003 3.63e-01 100 chrXVI:880073-880575 1.33e-14 33_[+2(8.22e-11)]_7_[+1(1.14e-11)]_\ 5 chrXII:636806-640232 5.83e-02 100 chrVII:878583-879017 2.10e-03 35_[+1(1.55e-06)]_35 chrXIV:102507-102998 4.92e-11 13_[-1(2.26e-08)]_7_[-2(6.49e-10)]_\ 25 chrIV:568693-569166 1.48e-12 2_[-1(4.30e-08)]_5_[-2(5.71e-12)]_\ 38 chrV:435623-436022 9.10e-07 22_[+1(7.16e-10)]_48 chrXI:578774-579199 1.40e-06 28_[-1(7.16e-10)]_42 chrIV:520784-521167 3.96e-05 46_[-1(1.62e-08)]_24 chrVI:137332-137742 4.38e-11 10_[+2(6.49e-10)]_7_[+1(2.26e-08)]_\ 28 chrII:642880-643272 8.94e-04 22_[+1(1.38e-07)]_48 chrIX:24907-25391 5.22e-01 100 chrII:405686-406137 1.48e-12 16_[-1(4.30e-08)]_5_[-2(5.71e-12)]_\ 24 chrXIII:747714-748164 1.48e-12 14_[+2(5.71e-12)]_5_[+1(4.30e-08)]_\ 26 chrIV:427531-428653 2.31e-01 100 chrIV:835790-836148 5.01e-02 30_[-3(2.65e-05)]_55 chrXV:594232-594612 1.05e-04 23_[+1(5.27e-08)]_47 chrXII:282876-283930 7.11e-01 100 chrVII:541650-542109 6.45e-06 55_[-2(7.81e-09)]_20 chrI:166090-166516 6.91e-13 13_[-1(7.16e-10)]_6_[-2(1.06e-10)]_\ 26 chrXII:201658-202512 6.37e-02 59_[+2(9.27e-05)]_16 chrIV:645027-645421 1.05e-05 20_[+1(1.62e-08)]_50 chrIV:1095190-1095648 1.17e-10 12_[+2(1.72e-09)]_25_[+1(2.26e-08)]_\ 8 chrX:374233-374765 1.81e-11 16_[+1(6.17e-07)]_22_[+2(5.71e-12)]_\ 7 chrIV:1256901-1257284 1.80e-03 7_[+1(3.28e-07)]_63 chrIV:992643-993041 3.20e-11 39_[-1(8.00e-09)]_4_[-2(5.85e-10)]_\ 2 chrXIII:168619-169056 1.03e-08 7_[-1(1.18e-06)]_22_[-2(2.26e-09)]_\ 16 chrXIV:499703-500790 7.88e-02 100 chrIII:142595-142971 3.50e-05 8_[+1(8.00e-09)]_62 chrXIII:732046-732403 2.34e-03 30_[-3(5.84e-07)]_55 chrVIII:34453-36046 4.22e-01 100 chrIV:1175667-1176041 2.30e-12 24_[-1(7.09e-09)]_6_[-2(4.26e-10)]_\ 15 chrXIII:420446-420845 3.06e-11 4_[+2(3.07e-10)]_7_[+1(2.82e-08)]_\ 34 chrXVI:689362-689824 4.44e-06 21_[-1(3.90e-10)]_49 chrVII:876198-877038 1.00e+00 100 chrX:354049-354438 1.83e-03 50_[-1(1.18e-06)]_20 chrX:414793-415151 1.88e-06 43_[-1(7.16e-10)]_27 chrVII:857231-857670 1.89e-04 61_[+1(3.87e-08)]_9 chrIV:1162690-1164409 7.36e-01 100 chrVII:115302-115705 1.18e-06 34_[-1(7.16e-10)]_36 chrVII:277669-278710 1.80e-01 100 chrXI:162307-162734 1.48e-12 28_[+2(5.71e-12)]_5_[+1(4.30e-08)]_\ 12 chrIV:1489106-1489855 9.92e-01 100 chrXV:92943-93302 3.64e-05 12_[+3(1.52e-05)]_11_[+3(3.55e-07)]_\ 47 chrIV:1075333-1075730 4.38e-09 2_[+2(3.43e-10)]_6_[+1(2.42e-06)]_\ 37 chrIV:1150717-1151114 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******************************************************************************** CPU: kali.stanford.edu ********************************************************************************