Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.012132
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.055937
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.069332
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.013513
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.063252
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background
Finished invoke:
  name: bg  status: 0  time: 0.010795
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 929.268151
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 71.026175
Invoking:
  centrimo -seqlen 350 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.182011
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.428793
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background -primary SSCYYTWMCCACTRVGCCAMV /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.39677
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background -primary RDRATGTAYGGRTGT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.324022
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background -primary SGGTTCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.240441
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background -primary CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.236267
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.225916
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background -primary CACGGYG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.213808
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background -primary AARARA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.263124
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background -primary AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.212673
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.210275
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background -primary AAATCCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.22814
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background -primary ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.203855
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background -primary ATGGGBG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.238466
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background -primary ACGYCAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.213761
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background --motif SSCYYTWMCCACTRVGCCAMV /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.196108
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background --motif RDRATGTAYGGRTGT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.188686
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background --motif SGGTTCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.106331
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background --motif CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.103269
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.103229
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background --motif CACGGYG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.102752
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background --motif AARARA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.088505
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background --motif AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.104092
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.103935
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background --motif AAATCCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.103464
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background --motif ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.104881
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background --motif ATGGGBG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.105588
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background --motif ACGYCAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/RM11-1A--STE12.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.103815
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.159979
Done