******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:90099-90199 1.0000 100 chrXI:490817-491094 1.0000 100 chrVII:278334-278684 1.0000 100 chrVII:726456-726734 1.0000 100 chrX:663972-664072 1.0000 100 chrXII:796451-796805 1.0000 100 chrVII:440593-440968 1.0000 100 chrXII:810332-810682 1.0000 100 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1.0000 100 chrVII:319742-319933 1.0000 100 chrXVI:699987-700336 1.0000 100 chrIV:411302-411608 1.0000 100 chrVII:807104-807454 1.0000 100 chrIII:262769-262886 1.0000 100 chrVII:766215-766421 1.0000 100 chrIV:341321-341580 1.0000 100 chrXI:245795-245924 1.0000 100 chrII:555874-556224 1.0000 100 chrXV:968937-969128 1.0000 100 chrII:645018-645319 1.0000 100 chrXV:742243-742593 1.0000 100 chrXII:897728-898001 1.0000 100 chrV:461891-462134 1.0000 100 chrI:68303-68653 1.0000 100 chrV:434462-434755 1.0000 100 chrXIII:759309-759659 1.0000 100 chrXVI:76389-76693 1.0000 100 chrXV:487403-487636 1.0000 100 chrIX:316176-316558 1.0000 100 chrII:88219-88489 1.0000 100 chrXII:92394-92716 1.0000 100 chrII:226946-227309 1.0000 100 chrVII:439304-439654 1.0000 100 chrXIII:552877-553227 1.0000 100 chrXIV:110633-110988 1.0000 100 chrVI:204587-204937 1.0000 100 chrXIII:872736-872915 1.0000 100 chrXVI:281653-281852 1.0000 100 chrXII:1028265-1028528 1.0000 100 chrIX:427547-427799 1.0000 100 chrIX:174936-175170 1.0000 100 chrIX:255290-255640 1.0000 100 chrXI:517784-518126 1.0000 100 chrVII:516242-516615 1.0000 100 chrVIII:382953-383374 1.0000 100 chrIX:427228-427493 1.0000 100 chrVII:412175-412524 1.0000 100 chrXVI:880181-880610 1.0000 100 chrII:165054-165495 1.0000 100 chrX:74127-74227 1.0000 100 chrXVI:302733-302944 1.0000 100 chrX:197223-197323 1.0000 100 chrVI:101227-101519 1.0000 100 chrXV:619275-619421 1.0000 100 chrV:176958-177310 1.0000 100 chrXIV:96117-96475 1.0000 100 chrIV:117822-118172 1.0000 100 chrXII:795218-795411 1.0000 100 chrXIII:222987-223337 1.0000 100 chrXIV:529511-529779 1.0000 100 chrVIII:75007-75331 1.0000 100 chrXII:710654-710832 1.0000 100 chrXV:29186-29536 1.0000 100 chrV:399248-399533 1.0000 100 chrVII:365078-365428 1.0000 100 chrXIV:63153-63420 1.0000 100 chrXVI:794595-794760 1.0000 100 chrVII:277078-277363 1.0000 100 chrVIII:115967-116344 1.0000 100 chrXIII:145935-146264 1.0000 100 chrI:142862-142950 1.0000 88 chrXIV:241427-241698 1.0000 100 chrIX:254266-254522 1.0000 100 chrII:326617-327020 1.0000 100 chrXI:259646-259996 1.0000 100 chrIV:358135-358388 1.0000 100 chrXIV:500020-500149 1.0000 100 chrII:592932-593234 1.0000 100 chrXII:922163-922503 1.0000 100 chrVI:223950-224138 1.0000 100 chrIII:82403-82666 1.0000 100 chrX:76109-76209 1.0000 100 chrXVI:66992-67342 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 590 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 58950 N= 590 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.295 C 0.205 G 0.205 T 0.295 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--STE12/background): A 0.307 C 0.193 G 0.193 T 0.307 ******************************************************************************** ******************************************************************************** MOTIF SSCYYTWMCCACTRVGCCAMV MEME-1 width = 21 sites = 156 llr = 2154 E-value = 7.6e-375 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSCYYTWMCCACTRVGCCAMV MEME-1 Description -------------------------------------------------------------------------------- Simplified A 211:1355:3a::433::a33 pos.-specific C 436331:4a6:8:22:a7:52 probability G 45121:11:1:::357::::3 matrix T ::15563::::2a1:::3:21 bits 2.4 * * 2.1 * * 1.9 * * 1.7 * * * * Relative 1.4 * *** *** Entropy 1.2 * *** **** (19.9 bits) 0.9 * *** **** 0.7 ** ****** ***** 0.5 **** * ****** ****** 0.2 ********************* 0.0 --------------------- Multilevel CGCTTTAACCACTAGGCCACG consensus GC CCATC A T GAA T AA sequence C TC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYTWMCCACTRVGCCAMV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrII:226946-227309 - 3 5.53e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TT chrIV:980870-981188 + 51 5.53e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCTCAAT chrIV:437631-437939 - 42 5.53e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCTTACT chrV:86410-86785 - 62 5.53e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCATAAC chrXIII:259055-259377 + 48 5.53e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCATACT chrXII:167875-168180 + 23 5.53e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCATATG chrX:523905-524005 + 42 5.53e-11 TCTAATCTTT CGCCTTAACCACTCGGCCAAG TTGCCTTTAA chrIV:1150749-1151073 + 55 2.01e-10 TAGCAGGCAT CGCCTTAACCACTCGGCCACT GGGACTGAAA chrVI:191480-191761 + 18 2.01e-10 AGCAGGGCAT CGCCTTAACCACTCGGCCACT GGGACAGAAT chrXV:274504-274873 - 40 2.01e-10 AGCAGGGCAT CGCCTTAACCACTCGGCCACT GGGACACGAT chrXII:784210-784526 - 41 2.01e-10 TAGCAGGCAT CGCCTTAACCACTCGGCCACT GGGACGGTTG chrIII:227797-228136 - 31 4.05e-10 TCGAGTCTCT CGCCTTAACCACTCGGCCATA GTGCCATTTC chrIX:248682-249016 - 56 4.05e-10 TCAAGTCTGT CGCCTTAACCACTCGGCCATA GTGCCTAAAA chrX:197223-197323 + 64 1.45e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCTAATA chrVII:774205-774572 - 16 1.45e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCAATTA chrXII:656844-657149 + 35 1.45e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCAATTT chrVIII:146133-146434 + 56 1.45e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCTGATA chrXVI:856751-857074 - 45 1.45e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCGAATC chrIV:410242-410535 - 46 1.45e-09 GCTAAGGGAG CGCGCTACCGACTACGCCACA CGCCCAATAT chrV:551191-551489 + 43 1.76e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCTGTAA chrIV:667888-668312 + 5 1.76e-09 CGGT GCCTTAACCAACTGGGCCAAG AGACCAATTT chrXVI:819368-819703 - 49 1.76e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCATTCT chrIX:183329-183656 + 46 1.76e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCAGGAA chrVII:738967-739289 - 49 1.76e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCTATTT chrII:197346-197614 - 69 1.76e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCTTGAT chrXII:734653-734930 - 66 1.76e-09 TTAGCACGGT GCCTTAACCAACTGGGCCAAG AGACCAAACT chrXII:214806-215100 + 27 2.13e-09 GCAAGGGAAG CGCGCTACCAACTGCGCCATG TGCCCTAAAA chrVII:794273-794570 - 51 2.13e-09 GCAAGGGAAG CGCGCTACCAACTGCGCCATG TGCCCGCAAT chrX:617755-617855 - 54 3.11e-09 TAAATCTGAC GCCTTAAACCACTCGGCCAAA CTCCCATTGT chrXII:731980-732253 - 29 3.11e-09 TAAATCTGAC GCCTTAAACCACTCGGCCAAA CTCCCATTGT chrXII:592430-592760 + 49 3.11e-09 TAAATCTGAC GCCTTAAACCACTCGGCCAAA CTCCCATTGT chrVIII:115967-116344 + 49 5.32e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCTCTAA chrIX:174936-175170 - 33 5.32e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCTCGTA chrX:59048-59148 + 15 5.32e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCTTCTA chrII:266233-266573 - 30 5.32e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCAGTTT chrIII:295331-295667 - 40 5.32e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCTTAAT chrXV:353950-354261 + 33 5.32e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCAGTAA chrXV:113664-113933 - 59 5.32e-09 ACTAGTGTGG CGCCTTACCAACTTGGCCATA GAAGCTAAAT chrIV:619871-620181 + 40 6.32e-09 CGTAGCCAGA CGCCGTGACCATTGGGCCACG AGGAACAAGA chrX:233772-233872 - 65 6.32e-09 CGTAGCCAGA CGCCGTGACCATTGGGCCACG AGGAACAAGA chrXII:374200-374558 - 31 6.32e-09 CGTAGCCAGA CGCCGTGACCATTGGGCCACG AGGAACAAGA chrV:492214-492585 + 50 6.32e-09 CGTAGCCAGA CGCCGTGACCATTGGGCCACG AGGAATAGGA chrXI:490817-491094 - 68 6.32e-09 CGTAGCCAGA CGCCGTGACCATTGGGCCACG AGGAACAAGA chrXII:605197-605564 + 77 7.48e-09 ATAAGCACGA AGCTCTAACCACTGAGCTACA CGA chrIV:884241-884584 - 4 7.48e-09 ATAAGCACGA AGCTCTAACCACTGAGCTACA CGA chrVII:115361-115638 - 44 1.22e-08 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAGT chrXV:438510-438850 - 18 1.22e-08 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAGT chrXII:875226-875585 - 26 1.22e-08 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAGT chrXI:578807-579194 - 20 1.22e-08 AAAAGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAGT chrXVI:769090-769548 + 8 1.22e-08 AGCCGAA CGCTCTACCAACTGAGCTAAC AAGGATGAGT chrXII:962903-963208 + 25 1.95e-08 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCGTCGA chrIV:519635-519877 - 42 1.95e-08 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCGTAAA chrII:9448-9713 - 58 1.95e-08 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCACGAA chrX:424337-424437 + 30 1.95e-08 TAAGTCTGCC GCCTTAGACCACTCGGCCAAC CCTCCATCTT chrXIV:632464-632781 - 32 2.63e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCACTTT chrXII:975918-976177 + 34 2.63e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCTTTTA chrXVI:810557-810802 - 52 2.63e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCGCAAA chrVI:137397-137680 + 46 2.63e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCAGTCA chrVII:730997-731306 - 41 2.63e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCTTTTT chrXV:228164-228506 - 51 2.63e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCTAATA chrIII:127565-127871 - 53 2.63e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCATTTT chrXI:74454-74795 - 55 2.63e-08 ACAGTCGCAC GCCTTAACCAACTTGGCCATG GAGTCTAATT chrVII:185641-185905 + 38 4.03e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTATTT chrVII:122130-122478 - 20 4.03e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTAATT chrIX:300151-300443 + 28 4.03e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTATTT chrXVI:581919-582224 - 46 4.03e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTCTTT chrXIII:480516-480833 + 44 4.03e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTACTT chrIV:1201609-1201932 - 35 4.03e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTATTT chrVI:226601-226906 + 32 4.03e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCATTTT chrVII:876248-876577 - 37 4.03e-08 AAGAGTCATA CGCGCTACCGATTGCGCCAAC AAGGCTATTC chrIV:1095227-1095606 + 70 8.95e-08 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAG TCCGCTAACA chrVI:157855-158160 + 25 1.46e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTTCTA chrVIII:237767-238092 + 35 1.46e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTTACT chrXVI:560103-560440 + 43 1.46e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTCAAT chrII:36244-36566 - 48 1.46e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTTACA chrVIII:358387-358698 + 52 1.46e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCTTACT chrVII:440593-440968 + 52 1.46e-07 TTCAGTCTGG CGCTCTCCCAACTGAGCTAAA TCCGCATATA chrVII:412175-412524 + 43 1.85e-07 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCAGTTT chrVII:823322-823663 - 45 1.85e-07 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCACTCT chrXIII:586573-586856 + 20 1.85e-07 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCATAGT chrXI:308053-308359 + 36 1.85e-07 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCACTTA chrXIII:372357-372595 + 67 1.85e-07 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCAGGTT chrXV:663730-664030 + 30 1.85e-07 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCACTAT chrV:469326-469594 - 52 1.85e-07 TTAAGCAGAT GCCATAACCGACTAGACCACG AAACCAATTA chrVI:162088-162359 - 60 2.32e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTTGTT chrVI:180826-181196 + 58 2.32e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTTATT chrVII:845492-845814 - 51 2.32e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTTGTT chrIV:83401-83686 - 60 2.32e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTAAGT chrXV:226528-226823 + 31 2.32e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTGAAT chrVII:930870-931171 + 28 2.32e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTTACT chrXVI:860226-860576 - 33 2.32e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTTGTT chrIV:992703-992999 - 36 2.32e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTCACA chrXV:282021-282322 - 48 2.32e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCGCTTT chrV:61720-62112 + 69 2.32e-07 TGGCAACGTT GGATTTTACCACTAAACCACT TGCGCTTACT chrX:390944-391044 + 31 3.57e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTACT GAAGCACTAT chrX:422798-422898 - 56 3.57e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTACT GAAGCATACA chrXV:976358-976568 - 13 3.57e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTACT GAAGCGCACA chrXIII:572762-573097 + 51 3.57e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTACT GAAGCTATCT chrIV:1175718-1176015 - 18 3.57e-07 ATGAGACTGA CGCTCTTCCTACTGAGCTACT GAAGCTTTGT chrVI:101227-101519 - 58 3.96e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCGAATT chrXII:92394-92716 - 48 3.96e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCTTATT chrXIII:195986-196303 + 51 3.96e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCTTGTG chrXIV:568034-568235 - 36 3.96e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCGATTA chrI:139014-139323 - 39 3.96e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCGTACT chrXV:300938-301286 - 40 3.96e-07 CCCAAAGCGA GAATCATACCACTAGACCACA CGCCCGATCT chrVII:857298-857628 + 53 5.90e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACCACTTA chrXII:628229-628600 - 24 5.90e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACCACTTA chrVII:205362-205764 - 13 5.90e-07 TGAATCAGGC GCCTTAGACCGCTCGGCCAAA CAACCACTTA chrIV:1256936-1257239 + 17 9.42e-07 GGGAAGCATG AATTCTAACCACTGAACCACT TTCGCTAAGA chrVIII:466836-467123 - 66 1.12e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAAG GAGGCTAAAA chrVII:661592-661898 - 59 1.12e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAAG GAGGCAAATT chrXVI:744132-744469 - 39 1.12e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAAG GAGGCTTTTA chrVII:1004080-1004376 - 43 1.12e-06 TACAAGTGCA ACGCTCTACCACTAAGCTAAG GAGGCAAACC chrIII:149774-150087 - 45 1.23e-06 TATGAGCCCT GCGCGCTTCCACTGCGCCACG GCGCTCAACA chrV:99978-100284 - 57 1.23e-06 TATGAGCCCT GCGCGCTTCCACTGCGCCACG GCGCTTAGCC chrX:517683-517783 + 57 1.23e-06 TATGAGCCCT GCGCGCTTCCACTGCGCCACG GCGCTTAACT chrX:542853-542953 + 44 1.45e-06 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTATTT chrXV:288037-288393 - 32 1.45e-06 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGAAGCT chrX:354084-354184 - 39 1.45e-06 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTGATA chrIV:946088-946593 - 27 1.45e-06 CAGTCTTGCG CCTTAAACCAACTTGGCTACC GAGAGTCGAT chrXIII:747764-748123 + 45 1.85e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCACG CGAGCTAGTC chrVII:736169-736509 - 56 1.85e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCACG CGAGCTATTG chrX:355208-355308 - 24 1.85e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCACG CGAGCTACTG chrXIII:131756-132051 + 18 1.85e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCACG CGAGCTAAAT chrV:138505-138869 - 34 1.85e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCACG CGAGCATTAT chrXI:162339-162697 + 65 1.85e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCACG CGAGCTAATA chrIV:568728-569130 - 8 1.85e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCACG CGAGCTA chrX:374438-374538 + 16 1.85e-06 TAGAAGTCAG ACGCGTTGCCATTACGCCACG CGAGCTACTA chrXI:46679-46950 + 17 2.01e-06 TACGAGTGCG ATGCCTTACCACTTGGCCAAA AGGGCTGAGT chrXIII:379235-379569 + 31 2.17e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCACC GCTTCAACTT chrXVI:56046-56428 + 62 2.17e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCACC GCTTCAACTA chrXI:302762-303099 - 43 2.17e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCACC GCTTCATCTT chrVII:878598-878976 + 53 2.17e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCACC GCTTCATCTT chrVII:287231-287602 + 64 2.17e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCACC GCTTCATCTT chrX:415855-415955 + 43 2.17e-06 TTGGAGTCGA AAGCTCTACCATTGAGCCACC GCTTCAACTT chrII:642935-643232 + 20 3.89e-06 TTGCAATCTG CTGCGCTACCACTGCGCCATA CGAGCTTTCT chrXV:980569-980889 - 9 3.89e-06 CCCAAAGCGA GAATCATTCCACTAGACCACA CGCCCATA chrIII:168176-168595 + 12 5.43e-06 CAAAACCGAA AGTGATAACCACTACACTATA GGACCAGGAC chrXIII:808154-808480 + 25 5.43e-06 CAGAACCGAA AGTGATAACCACTACACTATA GGACCTTTTT chrVIII:134203-134488 - 31 5.43e-06 CAAAACCGAA AGTGATAACCACTACACTATA GGACCGGAAC chrIV:802619-802944 + 46 5.43e-06 CAAAACCGAA AGTGATAACCACTACACTATA GGACCGACAA chrIV:520818-521139 - 49 5.43e-06 CAAAACCGAA AGTGATAACCACTACACTATA GGACCCTAAA chrV:131025-131289 + 21 5.43e-06 CAAAACCGAA AGTGATAACCACTACACTATA AAACCTCTTA chrXII:448472-448874 + 73 5.43e-06 CAAAACCGAA AGTGATAACCACTACACTATA GGACCGG chrIV:645064-645363 + 36 5.43e-06 CAAAACCGAA AGTGATAACCACTACACTATA GGACCGTAAC chrXIV:96117-96475 + 41 5.79e-06 GGAAGGGTGG GATGATAACCACTACACTAAC CGCCCATGTG chrXI:382197-382467 + 75 6.55e-06 CGTCAGTAAC CGTTCCACCCATTCCTCCACG GTATG chrIII:123490-123797 + 30 8.32e-06 CCCTAAGCGA GAATCATACCTCTAGACCACA CGCCCTCCTT chrXIV:631778-632064 + 21 8.32e-06 CCCTAAGCGA GAATCATACCTCTAGACCACA CGCCCGGTAG chrII:326617-327020 + 72 9.33e-06 TAAAGGCGAC GTCTTGAACCACTGGACCATT GGACCCGG chrXII:459564-459939 - 22 9.33e-06 ACTCGGTCAG GCTCTTACCAGCTTAACTACA GTTGATCGGA chrX:204583-204683 - 69 1.04e-05 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGATTTTT chrXII:426974-427289 - 56 1.04e-05 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGATAAGA chrXV:571820-572119 - 44 1.04e-05 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGATTTTA chrII:405719-406166 - 73 1.04e-05 AAGCGCC CATTCTGACCATTAAACTATC ACGGAAGAAA chrXI:513253-513539 + 32 1.04e-05 GACAAGCGCC CATTCTGACCATTAAACTATC ACGGAACGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYTWMCCACTRVGCCAMV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:226946-227309 5.5e-11 2_[-1]_77 chrIV:980870-981188 5.5e-11 50_[+1]_29 chrIV:437631-437939 5.5e-11 41_[-1]_38 chrV:86410-86785 5.5e-11 61_[-1]_18 chrXIII:259055-259377 5.5e-11 47_[+1]_32 chrXII:167875-168180 5.5e-11 22_[+1]_57 chrX:523905-524005 5.5e-11 41_[+1]_38 chrIV:1150749-1151073 2e-10 54_[+1]_25 chrVI:191480-191761 2e-10 17_[+1]_62 chrXV:274504-274873 2e-10 39_[-1]_40 chrXII:784210-784526 2e-10 40_[-1]_39 chrIII:227797-228136 4e-10 30_[-1]_49 chrIX:248682-249016 4e-10 55_[-1]_24 chrX:197223-197323 1.4e-09 63_[+1]_16 chrVII:774205-774572 1.4e-09 15_[-1]_64 chrXII:656844-657149 1.4e-09 34_[+1]_45 chrVIII:146133-146434 1.4e-09 55_[+1]_24 chrXVI:856751-857074 1.4e-09 44_[-1]_35 chrIV:410242-410535 1.4e-09 45_[-1]_34 chrV:551191-551489 1.8e-09 42_[+1]_37 chrIV:667888-668312 1.8e-09 4_[+1]_75 chrXVI:819368-819703 1.8e-09 48_[-1]_31 chrIX:183329-183656 1.8e-09 45_[+1]_34 chrVII:738967-739289 1.8e-09 48_[-1]_31 chrII:197346-197614 1.8e-09 68_[-1]_11 chrXII:734653-734930 1.8e-09 65_[-1]_14 chrXII:214806-215100 2.1e-09 26_[+1]_53 chrVII:794273-794570 2.1e-09 50_[-1]_29 chrX:617755-617855 3.1e-09 53_[-1]_26 chrXII:731980-732253 3.1e-09 28_[-1]_51 chrXII:592430-592760 3.1e-09 48_[+1]_31 chrVIII:115967-116344 5.3e-09 48_[+1]_31 chrIX:174936-175170 5.3e-09 32_[-1]_47 chrX:59048-59148 5.3e-09 14_[+1]_65 chrII:266233-266573 5.3e-09 29_[-1]_50 chrIII:295331-295667 5.3e-09 39_[-1]_40 chrXV:353950-354261 5.3e-09 32_[+1]_47 chrXV:113664-113933 5.3e-09 58_[-1]_21 chrIV:619871-620181 6.3e-09 39_[+1]_40 chrX:233772-233872 6.3e-09 64_[-1]_15 chrXII:374200-374558 6.3e-09 30_[-1]_49 chrV:492214-492585 6.3e-09 49_[+1]_30 chrXI:490817-491094 6.3e-09 67_[-1]_12 chrXII:605197-605564 7.5e-09 76_[+1]_3 chrIV:884241-884584 7.5e-09 3_[-1]_76 chrVII:115361-115638 1.2e-08 43_[-1]_36 chrXV:438510-438850 1.2e-08 17_[-1]_62 chrXII:875226-875585 1.2e-08 25_[-1]_54 chrXI:578807-579194 1.2e-08 19_[-1]_60 chrXVI:769090-769548 1.2e-08 7_[+1]_72 chrXII:962903-963208 2e-08 24_[+1]_55 chrIV:519635-519877 2e-08 41_[-1]_38 chrII:9448-9713 2e-08 57_[-1]_22 chrX:424337-424437 2e-08 29_[+1]_50 chrXIV:632464-632781 2.6e-08 31_[-1]_48 chrXII:975918-976177 2.6e-08 33_[+1]_46 chrXVI:810557-810802 2.6e-08 51_[-1]_28 chrVI:137397-137680 2.6e-08 45_[+1]_34 chrVII:730997-731306 2.6e-08 40_[-1]_39 chrXV:228164-228506 2.6e-08 50_[-1]_29 chrIII:127565-127871 2.6e-08 52_[-1]_27 chrXI:74454-74795 2.6e-08 54_[-1]_25 chrVII:185641-185905 4e-08 37_[+1]_42 chrVII:122130-122478 4e-08 19_[-1]_60 chrIX:300151-300443 4e-08 27_[+1]_52 chrXVI:581919-582224 4e-08 45_[-1]_34 chrXIII:480516-480833 4e-08 43_[+1]_36 chrIV:1201609-1201932 4e-08 34_[-1]_45 chrVI:226601-226906 4e-08 31_[+1]_48 chrVII:876248-876577 4e-08 36_[-1]_43 chrIV:1095227-1095606 9e-08 69_[+1]_10 chrVI:157855-158160 1.5e-07 24_[+1]_55 chrVIII:237767-238092 1.5e-07 34_[+1]_45 chrXVI:560103-560440 1.5e-07 42_[+1]_37 chrII:36244-36566 1.5e-07 47_[-1]_32 chrVIII:358387-358698 1.5e-07 51_[+1]_28 chrVII:440593-440968 1.5e-07 51_[+1]_28 chrVII:412175-412524 1.8e-07 42_[+1]_37 chrVII:823322-823663 1.8e-07 44_[-1]_35 chrXIII:586573-586856 1.8e-07 19_[+1]_60 chrXI:308053-308359 1.8e-07 35_[+1]_44 chrXIII:372357-372595 1.8e-07 66_[+1]_13 chrXV:663730-664030 1.8e-07 29_[+1]_50 chrV:469326-469594 1.8e-07 51_[-1]_28 chrVI:162088-162359 2.3e-07 59_[-1]_20 chrVI:180826-181196 2.3e-07 57_[+1]_22 chrVII:845492-845814 2.3e-07 50_[-1]_29 chrIV:83401-83686 2.3e-07 59_[-1]_20 chrXV:226528-226823 2.3e-07 30_[+1]_49 chrVII:930870-931171 2.3e-07 27_[+1]_52 chrXVI:860226-860576 2.3e-07 32_[-1]_47 chrIV:992703-992999 2.3e-07 35_[-1]_44 chrXV:282021-282322 2.3e-07 47_[-1]_32 chrV:61720-62112 2.3e-07 68_[+1]_11 chrX:390944-391044 3.6e-07 30_[+1]_49 chrX:422798-422898 3.6e-07 55_[-1]_24 chrXV:976358-976568 3.6e-07 12_[-1]_67 chrXIII:572762-573097 3.6e-07 50_[+1]_29 chrIV:1175718-1176015 3.6e-07 17_[-1]_62 chrVI:101227-101519 4e-07 57_[-1]_22 chrXII:92394-92716 4e-07 47_[-1]_32 chrXIII:195986-196303 4e-07 50_[+1]_29 chrXIV:568034-568235 4e-07 35_[-1]_44 chrI:139014-139323 4e-07 38_[-1]_41 chrXV:300938-301286 4e-07 39_[-1]_40 chrVII:857298-857628 5.9e-07 52_[+1]_27 chrXII:628229-628600 5.9e-07 23_[-1]_56 chrVII:205362-205764 5.9e-07 12_[-1]_67 chrIV:1256936-1257239 9.4e-07 16_[+1]_63 chrVIII:466836-467123 1.1e-06 65_[-1]_14 chrVII:661592-661898 1.1e-06 58_[-1]_21 chrXVI:744132-744469 1.1e-06 38_[-1]_41 chrVII:1004080-1004376 1.1e-06 42_[-1]_37 chrIII:149774-150087 1.2e-06 44_[-1]_35 chrV:99978-100284 1.2e-06 56_[-1]_23 chrX:517683-517783 1.2e-06 56_[+1]_23 chrX:542853-542953 1.5e-06 43_[+1]_36 chrXV:288037-288393 1.5e-06 31_[-1]_48 chrX:354084-354184 1.5e-06 38_[-1]_41 chrIV:946088-946593 1.5e-06 26_[-1]_53 chrXIII:747764-748123 1.9e-06 44_[+1]_35 chrVII:736169-736509 1.9e-06 55_[-1]_24 chrX:355208-355308 1.9e-06 23_[-1]_56 chrXIII:131756-132051 1.9e-06 17_[+1]_62 chrV:138505-138869 1.9e-06 33_[-1]_46 chrXI:162339-162697 1.9e-06 64_[+1]_15 chrIV:568728-569130 1.9e-06 7_[-1]_72 chrX:374438-374538 1.9e-06 15_[+1]_64 chrXI:46679-46950 2e-06 16_[+1]_63 chrXIII:379235-379569 2.2e-06 30_[+1]_49 chrXVI:56046-56428 2.2e-06 61_[+1]_18 chrXI:302762-303099 2.2e-06 42_[-1]_37 chrVII:878598-878976 2.2e-06 52_[+1]_27 chrVII:287231-287602 2.2e-06 63_[+1]_16 chrX:415855-415955 2.2e-06 42_[+1]_37 chrII:642935-643232 3.9e-06 19_[+1]_60 chrXV:980569-980889 3.9e-06 8_[-1]_71 chrIII:168176-168595 5.4e-06 11_[+1]_68 chrXIII:808154-808480 5.4e-06 24_[+1]_55 chrVIII:134203-134488 5.4e-06 30_[-1]_49 chrIV:802619-802944 5.4e-06 45_[+1]_34 chrIV:520818-521139 5.4e-06 48_[-1]_31 chrV:131025-131289 5.4e-06 20_[+1]_59 chrXII:448472-448874 5.4e-06 72_[+1]_7 chrIV:645064-645363 5.4e-06 35_[+1]_44 chrXIV:96117-96475 5.8e-06 40_[+1]_39 chrXI:382197-382467 6.6e-06 74_[+1]_5 chrIII:123490-123797 8.3e-06 29_[+1]_50 chrXIV:631778-632064 8.3e-06 20_[+1]_59 chrII:326617-327020 9.3e-06 71_[+1]_8 chrXII:459564-459939 9.3e-06 21_[-1]_58 chrX:204583-204683 1e-05 68_[-1]_11 chrXII:426974-427289 1e-05 55_[-1]_24 chrXV:571820-572119 1e-05 43_[-1]_36 chrII:405719-406166 1e-05 72_[-1]_7 chrXI:513253-513539 1e-05 31_[+1]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYTWMCCACTRVGCCAMV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSCYYTWMCCACTRVGCCAMV width=21 seqs=156 chrII:226946-227309 ( 3) CGCCTTAACCACTCGGCCAAG 1 chrIV:980870-981188 ( 51) CGCCTTAACCACTCGGCCAAG 1 chrIV:437631-437939 ( 42) CGCCTTAACCACTCGGCCAAG 1 chrV:86410-86785 ( 62) CGCCTTAACCACTCGGCCAAG 1 chrXIII:259055-259377 ( 48) CGCCTTAACCACTCGGCCAAG 1 chrXII:167875-168180 ( 23) CGCCTTAACCACTCGGCCAAG 1 chrX:523905-524005 ( 42) CGCCTTAACCACTCGGCCAAG 1 chrIV:1150749-1151073 ( 55) CGCCTTAACCACTCGGCCACT 1 chrVI:191480-191761 ( 18) CGCCTTAACCACTCGGCCACT 1 chrXV:274504-274873 ( 40) CGCCTTAACCACTCGGCCACT 1 chrXII:784210-784526 ( 41) CGCCTTAACCACTCGGCCACT 1 chrIII:227797-228136 ( 31) CGCCTTAACCACTCGGCCATA 1 chrIX:248682-249016 ( 56) CGCCTTAACCACTCGGCCATA 1 chrX:197223-197323 ( 64) CGCGCTACCGACTACGCCACA 1 chrVII:774205-774572 ( 16) CGCGCTACCGACTACGCCACA 1 chrXII:656844-657149 ( 35) CGCGCTACCGACTACGCCACA 1 chrVIII:146133-146434 ( 56) CGCGCTACCGACTACGCCACA 1 chrXVI:856751-857074 ( 45) CGCGCTACCGACTACGCCACA 1 chrIV:410242-410535 ( 46) CGCGCTACCGACTACGCCACA 1 chrV:551191-551489 ( 43) GCCTTAACCAACTGGGCCAAG 1 chrIV:667888-668312 ( 5) GCCTTAACCAACTGGGCCAAG 1 chrXVI:819368-819703 ( 49) GCCTTAACCAACTGGGCCAAG 1 chrIX:183329-183656 ( 46) GCCTTAACCAACTGGGCCAAG 1 chrVII:738967-739289 ( 49) GCCTTAACCAACTGGGCCAAG 1 chrII:197346-197614 ( 69) GCCTTAACCAACTGGGCCAAG 1 chrXII:734653-734930 ( 66) GCCTTAACCAACTGGGCCAAG 1 chrXII:214806-215100 ( 27) CGCGCTACCAACTGCGCCATG 1 chrVII:794273-794570 ( 51) CGCGCTACCAACTGCGCCATG 1 chrX:617755-617855 ( 54) GCCTTAAACCACTCGGCCAAA 1 chrXII:731980-732253 ( 29) GCCTTAAACCACTCGGCCAAA 1 chrXII:592430-592760 ( 49) GCCTTAAACCACTCGGCCAAA 1 chrVIII:115967-116344 ( 49) CGCCTTACCAACTTGGCCATA 1 chrIX:174936-175170 ( 33) CGCCTTACCAACTTGGCCATA 1 chrX:59048-59148 ( 15) CGCCTTACCAACTTGGCCATA 1 chrII:266233-266573 ( 30) CGCCTTACCAACTTGGCCATA 1 chrIII:295331-295667 ( 40) CGCCTTACCAACTTGGCCATA 1 chrXV:353950-354261 ( 33) CGCCTTACCAACTTGGCCATA 1 chrXV:113664-113933 ( 59) CGCCTTACCAACTTGGCCATA 1 chrIV:619871-620181 ( 40) CGCCGTGACCATTGGGCCACG 1 chrX:233772-233872 ( 65) CGCCGTGACCATTGGGCCACG 1 chrXII:374200-374558 ( 31) CGCCGTGACCATTGGGCCACG 1 chrV:492214-492585 ( 50) CGCCGTGACCATTGGGCCACG 1 chrXI:490817-491094 ( 68) CGCCGTGACCATTGGGCCACG 1 chrXII:605197-605564 ( 77) AGCTCTAACCACTGAGCTACA 1 chrIV:884241-884584 ( 4) AGCTCTAACCACTGAGCTACA 1 chrVII:115361-115638 ( 44) CGCTCTACCAACTGAGCTAAC 1 chrXV:438510-438850 ( 18) CGCTCTACCAACTGAGCTAAC 1 chrXII:875226-875585 ( 26) CGCTCTACCAACTGAGCTAAC 1 chrXI:578807-579194 ( 20) CGCTCTACCAACTGAGCTAAC 1 chrXVI:769090-769548 ( 8) CGCTCTACCAACTGAGCTAAC 1 chrXII:962903-963208 ( 25) GCCTTAGACCACTCGGCCAAC 1 chrIV:519635-519877 ( 42) GCCTTAGACCACTCGGCCAAC 1 chrII:9448-9713 ( 58) GCCTTAGACCACTCGGCCAAC 1 chrX:424337-424437 ( 30) GCCTTAGACCACTCGGCCAAC 1 chrXIV:632464-632781 ( 32) GCCTTAACCAACTTGGCCATG 1 chrXII:975918-976177 ( 34) GCCTTAACCAACTTGGCCATG 1 chrXVI:810557-810802 ( 52) GCCTTAACCAACTTGGCCATG 1 chrVI:137397-137680 ( 46) GCCTTAACCAACTTGGCCATG 1 chrVII:730997-731306 ( 41) GCCTTAACCAACTTGGCCATG 1 chrXV:228164-228506 ( 51) GCCTTAACCAACTTGGCCATG 1 chrIII:127565-127871 ( 53) GCCTTAACCAACTTGGCCATG 1 chrXI:74454-74795 ( 55) GCCTTAACCAACTTGGCCATG 1 chrVII:185641-185905 ( 38) CGCGCTACCGATTGCGCCAAC 1 chrVII:122130-122478 ( 20) CGCGCTACCGATTGCGCCAAC 1 chrIX:300151-300443 ( 28) CGCGCTACCGATTGCGCCAAC 1 chrXVI:581919-582224 ( 46) CGCGCTACCGATTGCGCCAAC 1 chrXIII:480516-480833 ( 44) CGCGCTACCGATTGCGCCAAC 1 chrIV:1201609-1201932 ( 35) CGCGCTACCGATTGCGCCAAC 1 chrVI:226601-226906 ( 32) CGCGCTACCGATTGCGCCAAC 1 chrVII:876248-876577 ( 37) CGCGCTACCGATTGCGCCAAC 1 chrIV:1095227-1095606 ( 70) CGCTCTCCCAACTGAGCTAAG 1 chrVI:157855-158160 ( 25) CGCTCTCCCAACTGAGCTAAA 1 chrVIII:237767-238092 ( 35) CGCTCTCCCAACTGAGCTAAA 1 chrXVI:560103-560440 ( 43) CGCTCTCCCAACTGAGCTAAA 1 chrII:36244-36566 ( 48) CGCTCTCCCAACTGAGCTAAA 1 chrVIII:358387-358698 ( 52) CGCTCTCCCAACTGAGCTAAA 1 chrVII:440593-440968 ( 52) CGCTCTCCCAACTGAGCTAAA 1 chrVII:412175-412524 ( 43) GCCATAACCGACTAGACCACG 1 chrVII:823322-823663 ( 45) GCCATAACCGACTAGACCACG 1 chrXIII:586573-586856 ( 20) GCCATAACCGACTAGACCACG 1 chrXI:308053-308359 ( 36) GCCATAACCGACTAGACCACG 1 chrXIII:372357-372595 ( 67) GCCATAACCGACTAGACCACG 1 chrXV:663730-664030 ( 30) GCCATAACCGACTAGACCACG 1 chrV:469326-469594 ( 52) GCCATAACCGACTAGACCACG 1 chrVI:162088-162359 ( 60) GGATTTTACCACTAAACCACT 1 chrVI:180826-181196 ( 58) GGATTTTACCACTAAACCACT 1 chrVII:845492-845814 ( 51) GGATTTTACCACTAAACCACT 1 chrIV:83401-83686 ( 60) GGATTTTACCACTAAACCACT 1 chrXV:226528-226823 ( 31) GGATTTTACCACTAAACCACT 1 chrVII:930870-931171 ( 28) GGATTTTACCACTAAACCACT 1 chrXVI:860226-860576 ( 33) GGATTTTACCACTAAACCACT 1 chrIV:992703-992999 ( 36) GGATTTTACCACTAAACCACT 1 chrXV:282021-282322 ( 48) GGATTTTACCACTAAACCACT 1 chrV:61720-62112 ( 69) GGATTTTACCACTAAACCACT 1 chrX:390944-391044 ( 31) CGCTCTTCCTACTGAGCTACT 1 chrX:422798-422898 ( 56) CGCTCTTCCTACTGAGCTACT 1 chrXV:976358-976568 ( 13) CGCTCTTCCTACTGAGCTACT 1 chrXIII:572762-573097 ( 51) CGCTCTTCCTACTGAGCTACT 1 chrIV:1175718-1176015 ( 18) CGCTCTTCCTACTGAGCTACT 1 chrVI:101227-101519 ( 58) GAATCATACCACTAGACCACA 1 chrXII:92394-92716 ( 48) GAATCATACCACTAGACCACA 1 chrXIII:195986-196303 ( 51) GAATCATACCACTAGACCACA 1 chrXIV:568034-568235 ( 36) GAATCATACCACTAGACCACA 1 chrI:139014-139323 ( 39) GAATCATACCACTAGACCACA 1 chrXV:300938-301286 ( 40) GAATCATACCACTAGACCACA 1 chrVII:857298-857628 ( 53) GCCTTAGACCGCTCGGCCAAA 1 chrXII:628229-628600 ( 24) GCCTTAGACCGCTCGGCCAAA 1 chrVII:205362-205764 ( 13) GCCTTAGACCGCTCGGCCAAA 1 chrIV:1256936-1257239 ( 17) AATTCTAACCACTGAACCACT 1 chrVIII:466836-467123 ( 66) ACGCTCTACCACTAAGCTAAG 1 chrVII:661592-661898 ( 59) ACGCTCTACCACTAAGCTAAG 1 chrXVI:744132-744469 ( 39) ACGCTCTACCACTAAGCTAAG 1 chrVII:1004080-1004376 ( 43) ACGCTCTACCACTAAGCTAAG 1 chrIII:149774-150087 ( 45) GCGCGCTTCCACTGCGCCACG 1 chrV:99978-100284 ( 57) GCGCGCTTCCACTGCGCCACG 1 chrX:517683-517783 ( 57) GCGCGCTTCCACTGCGCCACG 1 chrX:542853-542953 ( 44) CCTTAAACCAACTTGGCTACC 1 chrXV:288037-288393 ( 32) CCTTAAACCAACTTGGCTACC 1 chrX:354084-354184 ( 39) CCTTAAACCAACTTGGCTACC 1 chrIV:946088-946593 ( 27) CCTTAAACCAACTTGGCTACC 1 chrXIII:747764-748123 ( 45) ACGCGTTGCCATTACGCCACG 1 chrVII:736169-736509 ( 56) ACGCGTTGCCATTACGCCACG 1 chrX:355208-355308 ( 24) ACGCGTTGCCATTACGCCACG 1 chrXIII:131756-132051 ( 18) ACGCGTTGCCATTACGCCACG 1 chrV:138505-138869 ( 34) ACGCGTTGCCATTACGCCACG 1 chrXI:162339-162697 ( 65) ACGCGTTGCCATTACGCCACG 1 chrIV:568728-569130 ( 8) ACGCGTTGCCATTACGCCACG 1 chrX:374438-374538 ( 16) ACGCGTTGCCATTACGCCACG 1 chrXI:46679-46950 ( 17) ATGCCTTACCACTTGGCCAAA 1 chrXIII:379235-379569 ( 31) AAGCTCTACCATTGAGCCACC 1 chrXVI:56046-56428 ( 62) AAGCTCTACCATTGAGCCACC 1 chrXI:302762-303099 ( 43) AAGCTCTACCATTGAGCCACC 1 chrVII:878598-878976 ( 53) AAGCTCTACCATTGAGCCACC 1 chrVII:287231-287602 ( 64) AAGCTCTACCATTGAGCCACC 1 chrX:415855-415955 ( 43) AAGCTCTACCATTGAGCCACC 1 chrII:642935-643232 ( 20) CTGCGCTACCACTGCGCCATA 1 chrXV:980569-980889 ( 9) GAATCATTCCACTAGACCACA 1 chrIII:168176-168595 ( 12) AGTGATAACCACTACACTATA 1 chrXIII:808154-808480 ( 25) AGTGATAACCACTACACTATA 1 chrVIII:134203-134488 ( 31) AGTGATAACCACTACACTATA 1 chrIV:802619-802944 ( 46) AGTGATAACCACTACACTATA 1 chrIV:520818-521139 ( 49) AGTGATAACCACTACACTATA 1 chrV:131025-131289 ( 21) AGTGATAACCACTACACTATA 1 chrXII:448472-448874 ( 73) AGTGATAACCACTACACTATA 1 chrIV:645064-645363 ( 36) AGTGATAACCACTACACTATA 1 chrXIV:96117-96475 ( 41) GATGATAACCACTACACTAAC 1 chrXI:382197-382467 ( 75) CGTTCCACCCATTCCTCCACG 1 chrIII:123490-123797 ( 30) GAATCATACCTCTAGACCACA 1 chrXIV:631778-632064 ( 21) GAATCATACCTCTAGACCACA 1 chrII:326617-327020 ( 72) GTCTTGAACCACTGGACCATT 1 chrXII:459564-459939 ( 22) GCTCTTACCAGCTTAACTACA 1 chrX:204583-204683 ( 69) CATTCTGACCATTAAACTATC 1 chrXII:426974-427289 ( 56) CATTCTGACCATTAAACTATC 1 chrXV:571820-572119 ( 44) CATTCTGACCATTAAACTATC 1 chrII:405719-406166 ( 73) CATTCTGACCATTAAACTATC 1 chrXI:513253-513539 ( 32) CATTCTGACCATTAAACTATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYTWMCCACTRVGCCAMV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 47150 bayes= 9.15787 E= 7.6e-375 -67 119 92 -1393 -112 79 139 -399 -133 162 -39 -119 -277 70 -27 65 -188 79 -83 63 -9 -101 -491 99 83 -211 -83 -3 67 117 -191 -358 -1393 237 -1393 -1393 -22 156 -52 -326 165 -1393 -291 -458 -1393 203 -1393 -54 -1393 -1393 -1393 171 28 -33 81 -119 -6 33 125 -1393 -15 -1393 189 -558 -1393 237 -1393 -1393 -1393 192 -1393 -19 171 -1393 -1393 -1393 6 125 -1393 -49 3 13 81 -119 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYTWMCCACTRVGCCAMV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 156 E= 7.6e-375 0.192308 0.442308 0.365385 0.000000 0.141026 0.333333 0.506410 0.019231 0.121795 0.596154 0.147436 0.134615 0.044872 0.314103 0.160256 0.480769 0.083333 0.333333 0.108974 0.474359 0.288462 0.096154 0.006410 0.608974 0.544872 0.044872 0.108974 0.301282 0.487179 0.435897 0.051282 0.025641 0.000000 1.000000 0.000000 0.000000 0.262821 0.570513 0.134615 0.032051 0.961538 0.000000 0.025641 0.012821 0.000000 0.788462 0.000000 0.211538 0.000000 0.000000 0.000000 1.000000 0.371795 0.153846 0.339744 0.134615 0.294872 0.243590 0.461538 0.000000 0.275641 0.000000 0.717949 0.006410 0.000000 1.000000 0.000000 0.000000 0.000000 0.730769 0.000000 0.269231 1.000000 0.000000 0.000000 0.000000 0.320513 0.461538 0.000000 0.217949 0.314103 0.211538 0.339744 0.134615 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSCYYTWMCCACTRVGCCAMV MEME-1 regular expression -------------------------------------------------------------------------------- [CG][GC]C[TC][TC][TA][AT][AC]C[CA]A[CT]T[AG][GAC][GA]C[CT]A[CAT][GAC] -------------------------------------------------------------------------------- Time 339.74 secs. ******************************************************************************** ******************************************************************************** MOTIF VMSTHDYAATCVKRAGRTCMBSGGTTCGA MEME-2 width = 29 sites = 82 llr = 1527 E-value = 5.7e-301 ******************************************************************************** -------------------------------------------------------------------------------- Motif VMSTHDYAATCVKRAGRTCMBSGGTTCGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 33:132178::2248142:3::2::::2a pos.-specific C 3551213212721::1:18544::::a:: probability G 422:14:1:23445276::2357a:::8: matrix T :128436116:231:::7213:::aa::: bits 2.4 * * 2.1 * * 1.9 * * 1.7 * * ** * Relative 1.4 * * ****** Entropy 1.2 * *** * ****** (26.9 bits) 0.9 * * *** * ******** 0.7 * * * ****** ******** 0.5 **** ***** **************** 0.2 **** ************************ 0.0 ----------------------------- Multilevel GCCTTGTAATCGGGAGGTCCCGGGTTCGA consensus CAG ATC CGATAG A ATCA A sequence A T A G G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VMSTHDYAATCVKRAGRTCMBSGGTTCGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrVII:185641-185905 - 6 3.42e-11 TAGCGCGTAT GACTCTTAATCATAAGGTTAGGGGTTCGA GCCCC chrVII:122130-122478 + 44 3.42e-11 TAGCGCGTAT GACTCTTAATCATAAGGTTAGGGGTTCGA GCCCCCTACA chrXVI:581919-582224 + 70 3.42e-11 TAGCGCGTAT GACTCTTAATCATAAGGTTAGGGGTTCGA GC chrXIII:480516-480833 - 12 3.42e-11 TAGCGCGTAT GACTCTTAATCATAAGGTTAGGGGTTCGA GCCCCCTACA chrIV:1201609-1201932 + 59 3.42e-11 TAGCGCGTAT GACTCTTAATCATAAGGTTAGGGGTTCGA GCCCCCTACA chrVII:876248-876577 + 61 3.42e-11 TAGCGCGTAT GACTCTTAATCATAAGGTTAGGGGTTCGA GCCCCCTACA chrVI:180826-181196 - 28 4.54e-11 GTAAAATCCA ACGTTGCCATCGTTGGGCCCCCGGTTCGA TTCCGGGCTT chrXV:226528-226823 - 1 4.54e-11 GTAAAATCCA ACGTTGCCATCGTTGGGCCCCCGGTTCGA chrXVI:860226-860576 + 55 4.54e-11 GTAAAATCCA ACGTTGCCATCGTTGGGCCCCCGGTTCGA TTCCGGGCTT chrIV:992703-992999 + 58 4.54e-11 GTAAAATCCA ACGTTGCCATCGTTGGGCCCCCGGTTCGA TTCCGGGCTT chrXV:282021-282322 + 70 4.54e-11 GTAAAATCCA ACGTTGCCATCGTTGGGCCCCCGGTTCGA TT chrXIII:183799-184008 - 60 4.54e-11 GTAAAATCCA ACGTTGCCATCGTTGGGCCCCCGGTTCGA TTCCGGGCTT chrXVI:572151-572517 + 12 4.54e-11 GTAAAATCCA ACGTTGCCATCGTTGGGCCCCCGGTTCGA TTCCGGGCTT chrV:61720-62112 - 39 4.54e-11 GTAAAATCCA ACGTTGCCATCGTTGGGCCCCCGGTTCGA TTCCGGGCTT chrVIII:115967-116344 - 17 7.86e-11 TAAGGCGCCA CACTAGTAATGTGGAGATCATCGGTTCAA ATCCGATTGG chrIX:174936-175170 + 57 7.86e-11 TAAGGCGCCA CACTAGTAATGTGGAGATCATCGGTTCAA ATCCGATTGG chrII:266233-266573 + 54 7.86e-11 TAAGGCGCCA CACTAGTAATGTGGAGATCATCGGTTCAA ATCCGATTGG chrXIII:747764-748123 - 14 7.86e-11 CAACGCGTCT GACTTCTAATCAGAAGATTATGGGTTCGA CCCCCATCGT chrIII:295331-295667 + 64 7.86e-11 TAAGGCGCCA CACTAGTAATGTGGAGATCATCGGTTCAA ATCCGATT chrXV:353950-354261 - 1 7.86e-11 TAAGGCGCCA CACTAGTAATGTGGAGATCATCGGTTCAA chrX:355208-355308 + 47 7.86e-11 CAACGCGTCT GACTTCTAATCAGAAGATTATGGGTTCGA CCCCCATCGT chrIV:434108-434440 - 55 7.86e-11 TAAGGCGCCA CACTAGTAATGTGGAGATCATCGGTTCAA ATCCGATTGG chrV:138505-138869 + 57 7.86e-11 CAACGCGTCT GACTTCTAATCAGAAGATTATGGGTTCGA CCCCCATCGT chrXI:162339-162697 - 34 7.86e-11 CAACGCGTCT GACTTCTAATCAGAAGATTATGGGTTCGA CCCCCATCGT chrII:405719-406166 + 14 7.86e-11 CAACGCGTCT GACTTCTAATCAGAAGATTATGGGTTCGA CCCCCATCGT chrIV:568728-569130 + 31 7.86e-11 CAACGCGTCT GACTTCTAATCAGAAGATTATGGGTTCGA CCCCCATCGT chrX:197223-197323 - 32 4.04e-10 TAGCGCGCTC CCTTAGCATGGGAGAGGTCTCCGGTTCGA TTCCGGACTC chrVII:774205-774572 + 40 4.04e-10 TAGCGCGCTC CCTTAGCATGGGAGAGGTCTCCGGTTCGA TTCCGGACTC chrXII:656844-657149 - 3 4.04e-10 TAGCGCGCTC CCTTAGCATGGGAGAGGTCTCCGGTTCGA TT chrVIII:146133-146434 - 24 4.04e-10 TAGCGCGCTC CCTTAGCATGGGAGAGGTCTCCGGTTCGA TTCCGGACTC chrXVI:856751-857074 + 69 4.04e-10 TAGCGCGCTC CCTTAGCATGGGAGAGGTCTCCGGTTCGA TTC chrIV:410242-410535 + 70 4.04e-10 TAGCGCGCTC CCTTAGCATGGGAGAGGTCTCCGGTTCGA TT chrII:326617-327020 - 39 4.55e-10 CAAGACGTCG CCTTTACACGGCGAAGATCCCGAGTTCGA ACCTCGGTTG chrIV:488590-489029 - 53 4.55e-10 CAAGACGTCG CCTTTACACGGCGAAGATCCCGAGTTCGA ACCTCGGTTG chrVII:412175-412524 - 10 5.73e-10 TATGGCATCT GCTTAACACGCAGAACGTCCCCAGTTCGA TCCTGGGCG chrVII:823322-823663 + 70 5.73e-10 TATGGCATCT GCTTAACACGCAGAACGTCCCCAGTTCGA TC chrXI:379645-379873 + 1 5.73e-10 . GCTTAACACGCAGAACGTCCCCAGTTCGA TCCTGGGCGA chrXI:308053-308359 - 3 5.73e-10 TATGGCATCT GCTTAACACGCAGAACGTCCCCAGTTCGA TC chrXIII:372357-372595 - 34 5.73e-10 TATGGCATCT GCTTAACACGCAGAACGTCCCCAGTTCGA TCCTGGGCGA chrVIII:134203-134488 + 54 7.20e-10 TTATCACTTT CGGTTTTGATCCGGACAACCCCGGTTCGA ATCCGGGTAG chrIV:802619-802944 - 15 7.20e-10 TTATCACTTT CGGTTTTGATCCGGACAACCCCGGTTCGA ATCCGGGTAG chrIV:520818-521139 + 72 7.20e-10 TTATCACTTT CGGTTTTGATCCGGACAACCCCGGTTCGA chrXII:448472-448874 - 42 7.20e-10 TTATCACTTT CGGTTTTGATCCGGACAACCCCGGTTCGA ATCCGGGTAG chrIV:645064-645363 - 5 7.20e-10 TTATCACTTT CGGTTTTGATCCGGACAACCCCGGTTCGA ATCC chrVIII:475598-475931 - 7 1.00e-09 TATCACGTTG CCTTCACACGGCAAAGGTCCCGAGTTCGA TCCTCG chrIV:1075376-1075690 - 4 1.00e-09 TATCACGTTG CCTTCACACGGCAAAGGTCCCGAGTTCGA TCC chrV:551191-551489 - 10 1.25e-09 TAAGGCACCG TGCTAATAACGCGGGGATCAGCGGTTCGA TCCCGCTAG chrXIV:569781-569961 - 61 1.25e-09 TAAGGCACCG TGCTAATAACGCGGGGATCAGCGGTTCGA TCCCGCTAGA chrIX:183329-183656 - 13 1.25e-09 TAAGGCACCG TGCTAATAACGCGGGGATCAGCGGTTCGA TCCCGCTAGA chrXV:976358-976568 + 37 1.72e-09 AAGAGCGTCA GTCTCATAATCTGAAGGTCGAGAGTTCGA ACCTCCCCTG chrXIII:572762-573097 - 19 1.72e-09 AAGAGCGTCA GTCTCATAATCTGAAGGTCGAGAGTTCGA ACCTCCCCTG chrIV:1175718-1176015 + 42 1.72e-09 AAGAGCGTCA GTCTCATAATCTGAAGGTCGAGAGTTCGA ACCTCCCCTG chrXIV:632464-632781 + 57 2.34e-09 TAAGGCGTGC GACTGTTAATCGCAAGATCGTGAGTTCAA CCCTCACTGG chrXII:975918-976177 - 1 2.34e-09 TAAGGCGTGC GACTGTTAATCGCAAGATCGTGAGTTCAA chrVI:137397-137680 - 13 2.34e-09 TAAGGCGTGC GACTGTTAATCGCAAGATCGTGAGTTCAA CCCTCACTGG chrVII:730997-731306 + 66 2.34e-09 TAAGGCGTGC GACTGTTAATCGCAAGATCGTGAGTTCAA CCCTCA chrXIV:102550-103011 + 16 2.34e-09 TAAGGCGTGC GACTGTTAATCGCAAGATCGTGAGTTCAA CCCTCACTGG chrV:176958-177310 + 43 2.86e-09 CTATCACATC ACGCTTTCACCGTGGAGACCGGGGTTCGA CTCCCCGTAT chrVII:541693-542110 + 27 2.86e-09 CTATCACATC ACGCTTTCACCGTGGAGACCGGGGTTCGA CTCCCCGTAT chrVII:328447-328828 + 24 2.86e-09 CTATCACATC ACGCTTTCACCGTGGAGACCGGGGTTCGA CTCCCCGTAT chrXIII:290655-290972 + 66 2.86e-09 CTATCACATC ACGCTTTCACCGTGGAGACCGGGGTTCGA CTCCCC chrV:354775-355239 + 5 2.86e-09 CATC ACGCTTTCACCGTGGAGACCGGGGTTCGA CTCCCCGTAT chrVII:401457-401615 - 56 2.86e-09 CTATCACATC ACGCTTTCACCGTGGAGACCGGGGTTCGA CTCCCCGTAT chrV:487255-487535 - 1 2.86e-09 CTATCACATC ACGCTTTCACCGTGGAGACCGGGGTTCGA chrIII:149774-150087 + 68 5.13e-09 AAGCGCGCAG GGCTCATAACCCTGATGTCCTCGGATCGA AACC chrX:517683-517783 - 26 5.13e-09 AAGCGCGCAG GGCTCATAACCCTGATGTCCTCGGATCGA AACCGAGCGG chrVIII:358387-358698 - 1 5.13e-09 AAAAACTTCG GTCAAGTTATCTGGAGGTCCTGTGTTCGA chrVII:440593-440968 - 1 5.13e-09 AAAAACTTCG GTCAAGTTATCTGGAGGTCCTGTGTTCGA chrXIV:96117-96475 - 10 1.27e-08 TTATCATCCC ACCCTTCCAAGGTGGGGACACGGGTTCGA TTCTCGTAC chrXVI:744132-744469 + 62 1.78e-08 TAGAGCGTTG CACTTGTAATGCAAAGGTCGTTAGTTCAA TTCTGACAGG chrVII:1004080-1004376 + 66 1.78e-08 TAGAGCGTTG CACTTGTAATGCAAAGGTCGTTAGTTCAA TTCTGA chrVIII:388800-389001 - 58 1.94e-08 AAACAGGAAG ACAAAGCATGCGAGAGGCCCTGGGTTCAA TTCCCAGCTC chrXV:288037-288393 + 72 1.94e-08 GTAATTTATC ACTACGAAATCTTGAGATCGGGCGTTCGA chrXV:980569-980889 + 65 1.94e-08 AACAGGAGGA ACAAAGCATGCGAGAGGCCCTGGGTTCAA TTCCCAG chrXIII:168677-169032 + 36 1.94e-08 GTAATTTATC ACTACGAAATCTTGAGATCGGGCGTTCGA CTCGCCCCCG chrIV:946088-946593 + 67 1.94e-08 GTAATTTATC ACTACGAAATCTTGAGATCGGGCGTTCGA CTCGC chrIV:1095227-1095606 - 19 2.69e-08 AAAAACTTTG GTCAAGATATCTGGAGGTCCTGTGTTCGA TCCACAGAGT chrIV:619871-620181 - 8 3.68e-08 CACGGCGTCT GGCTACGAACCAGAAGATTCCAGGTTCAA GTCCTGG chrXII:374200-374558 + 55 3.68e-08 CACGGCGTCT GGCTACGAACCAGAAGATTCCAGGTTCAA GTCCTGGCGG chrV:492214-492585 - 18 3.68e-08 CACGGCGTCT GGCTACGAACCAGAAGATTCCAGGTTCAA GTCCTGGCGG chrXV:438510-438850 + 65 2.21e-07 ATTTGCTTAA GCAAGGATACCGAAATGTCAGGGGTTCGA GCCCCCT chrXI:578807-579194 + 67 2.21e-07 ATTTGCTTAA GCAAGGATACCGAAATGTCAGGGGTTCGA GCCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VMSTHDYAATCVKRAGRTCMBSGGTTCGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:185641-185905 3.4e-11 5_[-2]_66 chrVII:122130-122478 3.4e-11 43_[+2]_28 chrXVI:581919-582224 3.4e-11 69_[+2]_2 chrXIII:480516-480833 3.4e-11 11_[-2]_60 chrIV:1201609-1201932 3.4e-11 58_[+2]_13 chrVII:876248-876577 3.4e-11 60_[+2]_11 chrVI:180826-181196 4.5e-11 27_[-2]_44 chrXV:226528-226823 4.5e-11 [-2]_71 chrXVI:860226-860576 4.5e-11 54_[+2]_17 chrIV:992703-992999 4.5e-11 57_[+2]_14 chrXV:282021-282322 4.5e-11 69_[+2]_2 chrXIII:183799-184008 4.5e-11 59_[-2]_12 chrXVI:572151-572517 4.5e-11 11_[+2]_60 chrV:61720-62112 4.5e-11 38_[-2]_33 chrVIII:115967-116344 7.9e-11 16_[-2]_55 chrIX:174936-175170 7.9e-11 56_[+2]_15 chrII:266233-266573 7.9e-11 53_[+2]_18 chrXIII:747764-748123 7.9e-11 13_[-2]_58 chrIII:295331-295667 7.9e-11 63_[+2]_8 chrXV:353950-354261 7.9e-11 [-2]_71 chrX:355208-355308 7.9e-11 46_[+2]_25 chrIV:434108-434440 7.9e-11 54_[-2]_17 chrV:138505-138869 7.9e-11 56_[+2]_15 chrXI:162339-162697 7.9e-11 33_[-2]_38 chrII:405719-406166 7.9e-11 13_[+2]_58 chrIV:568728-569130 7.9e-11 30_[+2]_41 chrX:197223-197323 4e-10 31_[-2]_40 chrVII:774205-774572 4e-10 39_[+2]_32 chrXII:656844-657149 4e-10 2_[-2]_69 chrVIII:146133-146434 4e-10 23_[-2]_48 chrXVI:856751-857074 4e-10 68_[+2]_3 chrIV:410242-410535 4e-10 69_[+2]_2 chrII:326617-327020 4.5e-10 38_[-2]_33 chrIV:488590-489029 4.5e-10 52_[-2]_19 chrVII:412175-412524 5.7e-10 9_[-2]_62 chrVII:823322-823663 5.7e-10 69_[+2]_2 chrXI:379645-379873 5.7e-10 [+2]_71 chrXI:308053-308359 5.7e-10 2_[-2]_69 chrXIII:372357-372595 5.7e-10 33_[-2]_38 chrVIII:134203-134488 7.2e-10 53_[+2]_18 chrIV:802619-802944 7.2e-10 14_[-2]_57 chrIV:520818-521139 7.2e-10 71_[+2] chrXII:448472-448874 7.2e-10 41_[-2]_30 chrIV:645064-645363 7.2e-10 4_[-2]_67 chrVIII:475598-475931 1e-09 6_[-2]_65 chrIV:1075376-1075690 1e-09 3_[-2]_68 chrV:551191-551489 1.2e-09 9_[-2]_62 chrXIV:569781-569961 1.2e-09 60_[-2]_11 chrIX:183329-183656 1.2e-09 12_[-2]_59 chrXV:976358-976568 1.7e-09 36_[+2]_35 chrXIII:572762-573097 1.7e-09 18_[-2]_53 chrIV:1175718-1176015 1.7e-09 41_[+2]_30 chrXIV:632464-632781 2.3e-09 56_[+2]_15 chrXII:975918-976177 2.3e-09 [-2]_71 chrVI:137397-137680 2.3e-09 12_[-2]_59 chrVII:730997-731306 2.3e-09 65_[+2]_6 chrXIV:102550-103011 2.3e-09 15_[+2]_56 chrV:176958-177310 2.9e-09 42_[+2]_29 chrVII:541693-542110 2.9e-09 26_[+2]_45 chrVII:328447-328828 2.9e-09 23_[+2]_48 chrXIII:290655-290972 2.9e-09 65_[+2]_6 chrV:354775-355239 2.9e-09 4_[+2]_67 chrVII:401457-401615 2.9e-09 55_[-2]_16 chrV:487255-487535 2.9e-09 [-2]_71 chrIII:149774-150087 5.1e-09 67_[+2]_4 chrX:517683-517783 5.1e-09 25_[-2]_46 chrVIII:358387-358698 5.1e-09 [-2]_71 chrVII:440593-440968 5.1e-09 [-2]_71 chrXIV:96117-96475 1.3e-08 9_[-2]_62 chrXVI:744132-744469 1.8e-08 61_[+2]_10 chrVII:1004080-1004376 1.8e-08 65_[+2]_6 chrVIII:388800-389001 1.9e-08 57_[-2]_14 chrXV:288037-288393 1.9e-08 71_[+2] chrXV:980569-980889 1.9e-08 64_[+2]_7 chrXIII:168677-169032 1.9e-08 35_[+2]_36 chrIV:946088-946593 1.9e-08 66_[+2]_5 chrIV:1095227-1095606 2.7e-08 18_[-2]_53 chrIV:619871-620181 3.7e-08 7_[-2]_64 chrXII:374200-374558 3.7e-08 54_[+2]_17 chrV:492214-492585 3.7e-08 17_[-2]_54 chrXV:438510-438850 2.2e-07 64_[+2]_7 chrXI:578807-579194 2.2e-07 66_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VMSTHDYAATCVKRAGRTCMBSGGTTCGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VMSTHDYAATCVKRAGRTCMBSGGTTCGA width=29 seqs=82 chrVII:185641-185905 ( 6) GACTCTTAATCATAAGGTTAGGGGTTCGA 1 chrVII:122130-122478 ( 44) GACTCTTAATCATAAGGTTAGGGGTTCGA 1 chrXVI:581919-582224 ( 70) GACTCTTAATCATAAGGTTAGGGGTTCGA 1 chrXIII:480516-480833 ( 12) GACTCTTAATCATAAGGTTAGGGGTTCGA 1 chrIV:1201609-1201932 ( 59) GACTCTTAATCATAAGGTTAGGGGTTCGA 1 chrVII:876248-876577 ( 61) GACTCTTAATCATAAGGTTAGGGGTTCGA 1 chrVI:180826-181196 ( 28) ACGTTGCCATCGTTGGGCCCCCGGTTCGA 1 chrXV:226528-226823 ( 1) ACGTTGCCATCGTTGGGCCCCCGGTTCGA 1 chrXVI:860226-860576 ( 55) ACGTTGCCATCGTTGGGCCCCCGGTTCGA 1 chrIV:992703-992999 ( 58) ACGTTGCCATCGTTGGGCCCCCGGTTCGA 1 chrXV:282021-282322 ( 70) ACGTTGCCATCGTTGGGCCCCCGGTTCGA 1 chrXIII:183799-184008 ( 60) ACGTTGCCATCGTTGGGCCCCCGGTTCGA 1 chrXVI:572151-572517 ( 12) ACGTTGCCATCGTTGGGCCCCCGGTTCGA 1 chrV:61720-62112 ( 39) ACGTTGCCATCGTTGGGCCCCCGGTTCGA 1 chrVIII:115967-116344 ( 17) CACTAGTAATGTGGAGATCATCGGTTCAA 1 chrIX:174936-175170 ( 57) CACTAGTAATGTGGAGATCATCGGTTCAA 1 chrII:266233-266573 ( 54) CACTAGTAATGTGGAGATCATCGGTTCAA 1 chrXIII:747764-748123 ( 14) GACTTCTAATCAGAAGATTATGGGTTCGA 1 chrIII:295331-295667 ( 64) CACTAGTAATGTGGAGATCATCGGTTCAA 1 chrXV:353950-354261 ( 1) CACTAGTAATGTGGAGATCATCGGTTCAA 1 chrX:355208-355308 ( 47) GACTTCTAATCAGAAGATTATGGGTTCGA 1 chrIV:434108-434440 ( 55) CACTAGTAATGTGGAGATCATCGGTTCAA 1 chrV:138505-138869 ( 57) GACTTCTAATCAGAAGATTATGGGTTCGA 1 chrXI:162339-162697 ( 34) GACTTCTAATCAGAAGATTATGGGTTCGA 1 chrII:405719-406166 ( 14) GACTTCTAATCAGAAGATTATGGGTTCGA 1 chrIV:568728-569130 ( 31) GACTTCTAATCAGAAGATTATGGGTTCGA 1 chrX:197223-197323 ( 32) CCTTAGCATGGGAGAGGTCTCCGGTTCGA 1 chrVII:774205-774572 ( 40) CCTTAGCATGGGAGAGGTCTCCGGTTCGA 1 chrXII:656844-657149 ( 3) CCTTAGCATGGGAGAGGTCTCCGGTTCGA 1 chrVIII:146133-146434 ( 24) CCTTAGCATGGGAGAGGTCTCCGGTTCGA 1 chrXVI:856751-857074 ( 69) CCTTAGCATGGGAGAGGTCTCCGGTTCGA 1 chrIV:410242-410535 ( 70) CCTTAGCATGGGAGAGGTCTCCGGTTCGA 1 chrII:326617-327020 ( 39) CCTTTACACGGCGAAGATCCCGAGTTCGA 1 chrIV:488590-489029 ( 53) CCTTTACACGGCGAAGATCCCGAGTTCGA 1 chrVII:412175-412524 ( 10) GCTTAACACGCAGAACGTCCCCAGTTCGA 1 chrVII:823322-823663 ( 70) GCTTAACACGCAGAACGTCCCCAGTTCGA 1 chrXI:379645-379873 ( 1) GCTTAACACGCAGAACGTCCCCAGTTCGA 1 chrXI:308053-308359 ( 3) GCTTAACACGCAGAACGTCCCCAGTTCGA 1 chrXIII:372357-372595 ( 34) GCTTAACACGCAGAACGTCCCCAGTTCGA 1 chrVIII:134203-134488 ( 54) CGGTTTTGATCCGGACAACCCCGGTTCGA 1 chrIV:802619-802944 ( 15) CGGTTTTGATCCGGACAACCCCGGTTCGA 1 chrIV:520818-521139 ( 72) CGGTTTTGATCCGGACAACCCCGGTTCGA 1 chrXII:448472-448874 ( 42) CGGTTTTGATCCGGACAACCCCGGTTCGA 1 chrIV:645064-645363 ( 5) CGGTTTTGATCCGGACAACCCCGGTTCGA 1 chrVIII:475598-475931 ( 7) CCTTCACACGGCAAAGGTCCCGAGTTCGA 1 chrIV:1075376-1075690 ( 4) CCTTCACACGGCAAAGGTCCCGAGTTCGA 1 chrV:551191-551489 ( 10) TGCTAATAACGCGGGGATCAGCGGTTCGA 1 chrXIV:569781-569961 ( 61) TGCTAATAACGCGGGGATCAGCGGTTCGA 1 chrIX:183329-183656 ( 13) TGCTAATAACGCGGGGATCAGCGGTTCGA 1 chrXV:976358-976568 ( 37) GTCTCATAATCTGAAGGTCGAGAGTTCGA 1 chrXIII:572762-573097 ( 19) GTCTCATAATCTGAAGGTCGAGAGTTCGA 1 chrIV:1175718-1176015 ( 42) GTCTCATAATCTGAAGGTCGAGAGTTCGA 1 chrXIV:632464-632781 ( 57) GACTGTTAATCGCAAGATCGTGAGTTCAA 1 chrXII:975918-976177 ( 1) GACTGTTAATCGCAAGATCGTGAGTTCAA 1 chrVI:137397-137680 ( 13) GACTGTTAATCGCAAGATCGTGAGTTCAA 1 chrVII:730997-731306 ( 66) GACTGTTAATCGCAAGATCGTGAGTTCAA 1 chrXIV:102550-103011 ( 16) GACTGTTAATCGCAAGATCGTGAGTTCAA 1 chrV:176958-177310 ( 43) ACGCTTTCACCGTGGAGACCGGGGTTCGA 1 chrVII:541693-542110 ( 27) ACGCTTTCACCGTGGAGACCGGGGTTCGA 1 chrVII:328447-328828 ( 24) ACGCTTTCACCGTGGAGACCGGGGTTCGA 1 chrXIII:290655-290972 ( 66) ACGCTTTCACCGTGGAGACCGGGGTTCGA 1 chrV:354775-355239 ( 5) ACGCTTTCACCGTGGAGACCGGGGTTCGA 1 chrVII:401457-401615 ( 56) ACGCTTTCACCGTGGAGACCGGGGTTCGA 1 chrV:487255-487535 ( 1) ACGCTTTCACCGTGGAGACCGGGGTTCGA 1 chrIII:149774-150087 ( 68) GGCTCATAACCCTGATGTCCTCGGATCGA 1 chrX:517683-517783 ( 26) GGCTCATAACCCTGATGTCCTCGGATCGA 1 chrVIII:358387-358698 ( 1) GTCAAGTTATCTGGAGGTCCTGTGTTCGA 1 chrVII:440593-440968 ( 1) GTCAAGTTATCTGGAGGTCCTGTGTTCGA 1 chrXIV:96117-96475 ( 10) ACCCTTCCAAGGTGGGGACACGGGTTCGA 1 chrXVI:744132-744469 ( 62) CACTTGTAATGCAAAGGTCGTTAGTTCAA 1 chrVII:1004080-1004376 ( 66) CACTTGTAATGCAAAGGTCGTTAGTTCAA 1 chrVIII:388800-389001 ( 58) ACAAAGCATGCGAGAGGCCCTGGGTTCAA 1 chrXV:288037-288393 ( 72) ACTACGAAATCTTGAGATCGGGCGTTCGA 1 chrXV:980569-980889 ( 65) ACAAAGCATGCGAGAGGCCCTGGGTTCAA 1 chrXIII:168677-169032 ( 36) ACTACGAAATCTTGAGATCGGGCGTTCGA 1 chrIV:946088-946593 ( 67) ACTACGAAATCTTGAGATCGGGCGTTCGA 1 chrIV:1095227-1095606 ( 19) GTCAAGATATCTGGAGGTCCTGTGTTCGA 1 chrIV:619871-620181 ( 8) GGCTACGAACCAGAAGATTCCAGGTTCAA 1 chrXII:374200-374558 ( 55) GGCTACGAACCAGAAGATTCCAGGTTCAA 1 chrV:492214-492585 ( 18) GGCTACGAACCAGAAGATTCCAGGTTCAA 1 chrXV:438510-438850 ( 65) GCAAGGATACCGAAATGTCAGGGGTTCGA 1 chrXI:578807-579194 ( 67) GCAAGGATACCGAAATGTCAGGGGTTCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VMSTHDYAATCVKRAGRTCMBSGGTTCGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 42430 bayes= 9.97905 E= 5.7e-301 -26 54 114 -307 -1 126 -29 -207 -265 133 33 -48 -133 -99 -1300 135 16 1 -118 30 -56 -82 101 -7 -207 71 -240 90 116 1 -166 -233 137 -82 -1300 -165 -465 10 10 90 -1300 192 47 -1300 -33 1 97 -74 -84 -166 118 10 52 -1300 126 -165 133 -1300 26 -1300 -184 -67 194 -265 39 -1300 163 -1300 -95 -67 -1300 123 -1300 208 -1300 -74 -7 130 -29 -207 -307 101 41 5 -307 114 140 -365 -40 -240 185 -307 -1300 -1300 237 -1300 -365 -1300 -1300 167 -1300 -1300 -1300 171 -1300 237 -1300 -1300 -48 -1300 201 -1300 171 -1300 -1300 -1300 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VMSTHDYAATCVKRAGRTCMBSGGTTCGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 82 E= 5.7e-301 0.256098 0.280488 0.426829 0.036585 0.304878 0.463415 0.158537 0.073171 0.048780 0.487805 0.243902 0.219512 0.121951 0.097561 0.000000 0.780488 0.341463 0.195122 0.085366 0.378049 0.207317 0.109756 0.390244 0.292683 0.073171 0.317073 0.036585 0.573171 0.682927 0.195122 0.060976 0.060976 0.792683 0.109756 0.000000 0.097561 0.012195 0.207317 0.207317 0.573171 0.000000 0.731707 0.268293 0.000000 0.243902 0.195122 0.378049 0.182927 0.170732 0.060976 0.439024 0.329268 0.439024 0.000000 0.463415 0.097561 0.768293 0.000000 0.231707 0.000000 0.085366 0.121951 0.743902 0.048780 0.402439 0.000000 0.597561 0.000000 0.158537 0.121951 0.000000 0.719512 0.000000 0.817073 0.000000 0.182927 0.292683 0.475610 0.158537 0.073171 0.036585 0.390244 0.256098 0.317073 0.036585 0.426829 0.512195 0.024390 0.231707 0.036585 0.695122 0.036585 0.000000 0.000000 1.000000 0.000000 0.024390 0.000000 0.000000 0.975610 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.219512 0.000000 0.780488 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VMSTHDYAATCVKRAGRTCMBSGGTTCGA MEME-2 regular expression -------------------------------------------------------------------------------- [GCA][CA][CGT]T[TA][GTA][TC]AA[TCG][CG][GA][GT][GA][AG]G[GA]TC[CA][CTG][GC][GA]GTTC[GA]A -------------------------------------------------------------------------------- Time 636.46 secs. ******************************************************************************** ******************************************************************************** MOTIF RDRATGTAYGGRTGT MEME-3 width = 15 sites = 127 llr = 1385 E-value = 1.7e-140 ******************************************************************************** -------------------------------------------------------------------------------- Motif RDRATGTAYGGRTGT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4447:::7:1:4::1 pos.-specific C 11::::2:4::::12 probability G 33522a:1:9a6:81 matrix T 221:8:815:::916 bits 2.4 * * 2.1 * * 1.9 * * 1.7 * ** Relative 1.4 * ** ** Entropy 1.2 ** ***** (15.7 bits) 0.9 **** ***** 0.7 **** ****** 0.5 ************* 0.2 * ************* 0.0 --------------- Multilevel AAGATGTATGGGTGT consensus GGAG C A C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDRATGTAYGGRTGT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrIV:222004-222279 + 42 1.47e-08 AAATGAGATA AGGGTGTACGGGTGT GGTAACCGTC chrXIII:296831-297108 - 47 5.36e-08 AAAAAAGTTC TAGATGTATGGGTGT GCGGGTAATG chrIV:1359450-1359763 - 40 6.63e-08 GCATGGGTGC GTGATGTACGGATGT TTAATGTCTT chrII:592932-593234 + 50 8.73e-08 ATGGAGTTCA AAGATGTATGGATGC AAGAAAAGAG chrXIII:225387-225694 - 55 8.73e-08 AATAAAAAAT AGAATGTACGGATGT AATGCACGGA chrXII:922163-922503 - 62 1.25e-07 CGAGAATTGG AATATGTACGGGTGT CAATTTCAAA chrVI:65031-65300 + 50 1.25e-07 GTTATCTCTG AATATGTACGGGTGT TGACATGGAG chrXV:79803-80088 + 51 1.25e-07 TCACTTATTT AATATGTACGGGTGT TTACATGGAG chrII:89717-89890 + 46 1.25e-07 GGTGTTAAAG AGGGTGTATGGATGT AAAGTCACAA chrXVI:404562-404912 - 19 1.44e-07 TTTTTTTAGA ATGATGCATGGGTGT GCAGCCTTTT chrXVI:794595-794760 - 28 1.79e-07 CGATAATATA AATATGTATGGGTGT TTGGAGATGT chrII:415547-415812 + 52 1.79e-07 TCTGGATGAC AAAATGCATGGGTGT AAAAAAGGAA chrII:45036-45318 - 43 1.79e-07 AAACATACAT AGAATGTACGGATGC ATGATTGTCT chrXII:932110-932458 + 31 1.79e-07 TACAGATGTA CAGATGTACGGATGT ACGGATGTAT chrIX:68262-68496 - 21 2.16e-07 ATACATCTTA GTAATGTACGGATGT AATAAACTCA chrVIII:505854-506154 + 45 2.52e-07 ATGTCTGGGT GAAATGTATGGATGC ATAATTGTCT chrV:396241-396528 - 45 2.52e-07 TGGGTTCACA AAAGTGTACGGATGT ATACAACAGG chrXIII:145935-146264 - 35 2.95e-07 TGTATGGTGT ATGGTGTATGGATGT ACAAAAATGC chrX:607925-608025 - 25 2.95e-07 TGGGTTAAAT AGGATGTATGGATGG AGGGTTGGCA chrVII:371259-371427 - 62 3.34e-07 GCGGCGGTGT GAGGTGCATGGGTGC CGGTATTTTT chrVI:223950-224138 + 61 4.02e-07 TGGGTCTAAG AGTATGTACGGATGT AAAAGAAAAC chrXI:108787-109060 - 48 4.02e-07 TGGAGCCAAC TAAATGTACGGATGT TGTAATGTGT chrXV:678857-679151 + 54 4.02e-07 ATGGGTCCAC AATATGTACGGATGT ATGGTCCCAA chrXII:710654-710832 - 40 4.53e-07 AACGCAAAAT GAGATGCGTGGGTGT GATTCCTGCT chrIV:358135-358388 + 36 5.41e-07 TCCTTGTCAG ATAATGTATGGGTGG TGTGTACACC chrIX:254266-254522 + 12 5.41e-07 CGCGGCAATT AGAATGTGTGGGTGC GGAAGCTCGC chrIV:341321-341580 + 41 5.41e-07 ACTGGGTGTT AAAATGTACGGATGG AAAAGTAGAC chrX:703305-703405 + 50 5.41e-07 AAATAAATAG TGGATGCATGGGTGC TTCCACGCGT chrXII:262896-263052 - 41 5.41e-07 CAAATTAACA TAAATGTATGGATGT ATTATTAAAT chrXVI:406225-406509 - 54 5.41e-07 TTTGGAGGTG GAAAGGTACGGATGT TAAACTTCAT chrXII:282545-282744 - 63 6.07e-07 ACGGAGGGAA AAGATGTACAGGTGT AAAAAAGCAC chrIV:1355723-1356073 + 13 6.07e-07 TAATTTTAAC CGAATGTATGGATGT TACAGGGAGC chrXIII:552877-553227 - 71 7.03e-07 AGCTTTCTAT GAGATGTATGGGTCT CATGAATAAC chrXII:781499-781826 + 42 7.03e-07 TGGGTTTATG AAAATGCACGGATGC ATTTTCTCTA chrVIII:125957-126261 - 43 7.03e-07 TGTAAAGATG TAGGTGTACGGATGC ATTAACGTCT chrVII:438612-438887 + 57 7.03e-07 GTAACGTTCC AAAATGTATGGATGG TAAGGTCTTT chrVII:254164-254526 - 33 7.03e-07 TGCATATTGA AAGATGTATGGGTTC AAAAATGTCC chrV:69081-69322 + 27 7.03e-07 GCGAAGCTTT GTGGGGTACGGGTGC ATGCTCGGCT chrXVI:731964-732268 - 38 9.26e-07 CCAACCATCC TAAAGGTATGGGTGT ACTGACGATG chrVII:149163-149478 + 34 9.26e-07 AAAAGAAATC AGTATGTATGGGTGG GTGTATGGAT chrXI:431412-431594 - 41 9.26e-07 AGATGTAAAA ATTGTGTATGGGTGT ATTTGCGCTG chrXIV:63153-63420 + 80 1.06e-06 GTGGGTTGCT AAAATGTTCGGATGT AAAGTA chrXIV:444495-444749 + 47 1.06e-06 TACGGATTTA AAGAGGTACGGATGG AGACCGTAGA chrXIII:732068-732367 - 39 1.06e-06 CCACACATGC GCGATGTGCGGATGT ATTATGTCTT chrV:53566-53871 - 51 1.06e-06 CCGAACACCA AATATGTGTGGGTGT CAAACAAAGA chrXIV:495239-495549 + 32 1.06e-06 AAATTTTTAA AGGAGGTTTGGGTGT GTATAGTGTA chrV:305827-306161 - 41 1.06e-06 TGTGGGCTTG TAAATGTGTGGGTGT ACAGTCCCGA chrVII:555370-555658 - 46 1.06e-06 CCAAACACTT TTAATGCACGGGTGT AAAAGGGATG chrIV:217230-217460 - 19 1.18e-06 ATTATAGAAT AAAATGTACGGGTTC AAAGCAGGGC chrVII:726456-726734 - 42 1.18e-06 ATGGGTGTAT ATAGGGTATGGGTGT ACAGTTAATT chrVIII:75007-75331 - 34 1.35e-06 ACGGATGTAG AAAATGTACAGGTGT GAACTTGCAG chrXVI:302733-302944 - 41 1.35e-06 TGGGTGTTTT AGGATGTCTGGATGT ACAAGTTAGC chrIII:78422-78649 + 55 1.35e-06 AAAATGCCGT GGGAGGCACGGATGC AAGATTTCTC chrIV:538900-539250 - 80 1.35e-06 TTGAAT GAGGGGTGTGGGTGT GATAATTCAT chrXII:48769-49047 + 43 1.35e-06 AAGGGTGTCT AAGATGTACGGATCT TCATTGGGAT chrVIII:175082-175331 - 26 1.35e-06 AAGGAGTTTC ATGATGTATGGGTCT CAGCATTGCG chrXII:796451-796805 + 54 1.35e-06 GTTATTATCC AGGAGGCACGGATGC AAAAGATAGA chrXII:713190-713525 + 63 1.50e-06 TTTTTTTATA CATATGTACGGATGT GATAGTCTGC chrVIII:382953-383374 + 3 1.73e-06 CT CGGATGTTCGGATGT CACTGTCTTT chrII:477076-477454 - 19 1.73e-06 TCTGGGTGTA TAAATGTGTGGGTGC AACATGAATG chrX:391959-392059 - 32 2.20e-06 CCCGCTCGCA GGGAGGTCTGGGTGT GGGGCGTGTG chrXVI:281653-281852 - 64 2.44e-06 GTAATCAAAG GAAGTGTAAGGGTGT AAAGAGGTAA chrVII:534834-535171 + 50 2.44e-06 ATGGGTTACA CAAATGCACGGATGC AAATATAAAA chrIX:316176-316558 - 35 2.75e-06 GGTTTGTAAA ATAATGTATGGGTTC TAGTCTGAAA chrVII:648995-649302 + 34 2.75e-06 ATTAAAAAAA GTAATGTATGGGTTC TCGTTGTACG chrX:75396-75496 + 25 2.75e-06 TTTTCAAATA GTGAGGTGTGGATGT ATAGAGAAAT chrXI:382197-382467 - 23 3.08e-06 TGTGTTGGGT GTGATGTCCGGATGC AACAGCAGCA chrXV:92967-93297 + 28 3.08e-06 ACGAACGTCA CATGTGTACGGATGT AGTTGTGTCA chrIV:1300973-1301278 - 34 3.08e-06 CCAAACATCC ACAGTGCACGGATGT TTGAAGGAAA chrII:60876-61208 + 79 3.08e-06 AAAGCAGTTG GGGGTGTACAGATGT TAATGTA chrII:604151-604441 - 55 3.08e-06 GCGAATATGA AAAATGTACAGATGT GTAAATGTAC chrIII:178357-178601 + 41 3.08e-06 AAAGAGTAGT AAAATGTACAGATGT TTATTAAGTC chrV:423135-423437 - 36 3.41e-06 TTGGGTGTAG AAGGTGTACGGAGGT AAATATGCAG chrXV:866605-866904 - 34 3.82e-06 ATACAAACCC AGAATGCTTGGATGT AGGGAAAAAA chrII:332365-332695 - 45 3.82e-06 TTTGGGTTTA GAATTGTATGGGTGC AGCAAGGAAA chrXVI:829010-829360 + 84 3.82e-06 GATTGACCGG ATGATGTAAGGATGC AT chrIV:117212-117536 - 46 4.21e-06 TATGGGTGTA GATATGTATGGGTCT GAGATTAGTA chrVII:277078-277363 - 57 4.72e-06 TCCCATAGAG CGGGTGTATGGGTCT AGCTTAAATA chrVIII:148964-149217 + 40 4.72e-06 TTATAATTCA ATGGTGCATGGGTGA AAATGTATGG chrXV:216295-216656 - 34 4.72e-06 CCTGGGTTGA GGAAGGCGCGGGTGC TCGGATGTTC chrIII:163502-163851 + 19 4.72e-06 CAGCCGCGGT TGGGTGCGTGGGTGC GGTAATTTAA chrXV:161179-161358 + 26 4.72e-06 TATAGGAATC CCGATGTATGGGTTT GGTTGCCAGA chrXII:522229-522381 - 23 5.19e-06 TTAGTTAATA ATAATGTACAGATGT TAATATGGTT chrXV:505157-505461 - 60 5.19e-06 AATACCATAT CATATGTTTGGGTGT GATAAGGTTC chrXII:1041504-1041716 - 76 5.80e-06 CAATAATTAT GGGATGTCTGGGTTT TAAACGTTTC chrXII:897728-898001 - 47 6.36e-06 ATGGGTTTTT TGGAGGTACAGGTGT TGTAGAATTC chrIV:579114-579317 - 61 8.51e-06 AATTTTTTTA AAAATGTTTGGGTCT ACTTTATGGT chrIV:1401297-1401564 - 53 9.37e-06 AAAAGGGTAA TATATGTGTGGGTGG AAAATGATTG chrIX:99679-99986 + 26 9.37e-06 GTTTCATGAA TAAATGTACTGGTGT TACATGGTGT chrVIII:296916-297170 - 64 1.02e-05 AGAGCATGCA GTGATGTACTGGTGG ACGAAATTGT chrXV:94520-94807 - 22 1.02e-05 ACCGAAGACA ATATTGCATGGGTGT TAATTCTATT chrXII:1028265-1028528 - 52 1.12e-05 CCCATACATT TTGGTGCATGGGTGA TATTTTGTCT chrIV:411302-411608 - 30 1.12e-05 CTTTGGGTGC CCGGGGTGTGGGTGT TTGATTTGTT chrIX:257404-257668 - 19 1.12e-05 CACATACAAT GTGTTGTTTGGGTGT TTTCCTTTCA chrXVI:188655-188897 - 64 1.12e-05 ACCATAGTAA CCGATGCATGGGTTT TAAAAGTCAC chrX:73441-73541 - 44 1.12e-05 TCTTTTCAGT GTGGTGCAAGGATGT AAAATGATGT chrX:90099-90199 - 45 1.12e-05 TGTATGGGTG AGAATGTTCAGGTGC AAATTTAAAA chrXI:67791-68008 - 64 1.22e-05 AAAATTTGAT GCGGTGCACGGATTT CAGCACGGGT chrVII:310545-310857 - 35 1.34e-05 GTGTGGGTCC CTGGTGTACAGATGT TACATTGGTT chrXVI:76389-76693 + 50 1.46e-05 AACACATCCG TGGATGTACAGGTGA AAATACAGTC chrXVI:502981-503112 - 52 1.46e-05 CTAATTAGTC TGAATGTATGGAGGC TTCTGCAGGC chrXIV:499263-499613 + 43 1.46e-05 GTAAACTCAT GTGGTGCACTGGTGT TGTTTCCAAG chrXI:109738-110088 + 23 1.60e-05 TATTACAGGC TAAAGGTTTGGATGC TACTAAATTG chrXV:978805-979102 + 33 1.60e-05 CGTATACACA AGGATGAATGGGTTC TACGACACCG chrXII:568147-568314 - 76 1.60e-05 AATATCGGCG AAAATGTTTGGGTTG GGAGTAGATT chrXIII:551391-551769 - 73 1.73e-05 TATGGGTGCC AATATGTACTGATGT TTAAGTAATA chrX:651301-651401 - 63 1.88e-05 ACTTGAGACA AATATGTATGGGTTA AGAATAATTA chrXIV:241427-241698 - 51 2.05e-05 ACGTGTATTG ATGGTGTTTAGGTGC TGGATGTTGG chrII:165054-165495 - 33 2.05e-05 GTGCTCTAAC GCGGTGTATGGGTTA GATTCGTAAT chrXII:1019029-1019322 + 16 2.05e-05 AAAAAATATA TTAATGTTTGGGTTT CAACGTTTCC chrVII:856679-857029 + 58 2.05e-05 TTCCATTGGT GCGGTGTATGGGCGG GTACCCTCAA chrXV:968149-968361 + 62 2.05e-05 TCAAAAGCGT GGGGTGCGTGGGCGT GCGCTGCTCG chrXVI:699987-700336 - 23 2.41e-05 GGGATTGGGT GTGATGTAAGGATTC GCGGTCCTCG chrV:362265-362432 - 52 2.60e-05 ATATTGAAAT ATATTGTATGGGTTT AAATTTCTTG chrXV:779736-780153 - 9 2.60e-05 TAAAAGGTAT GTGGGGTATGGGGGG GTGAAAAA chrIV:491047-491218 - 49 2.82e-05 TGTTTTTTCC TGAATGATTGGGTGT AATAAAATAG chrXV:253841-254079 + 66 3.04e-05 ATTTATACGC GCGGTGTACGGATTA AAAAAGTTTT chrIV:599876-600095 - 17 3.04e-05 CCGAATCTGG CAGATGCATGGATCG TTGAATAGTA chrXII:424218-424351 - 74 3.29e-05 GTGCACCACA GCAATGTACGTGTGT AGCGACTTAC chrXVI:520215-520504 - 55 3.54e-05 TTTTCCTCCG GCGAGGCCTGGGTGG AACACTCAGG chrV:23613-23806 - 38 3.54e-05 TATTAAATGA GAAATGTGGGGGTGG GGTATGCGTT chrIII:262769-262886 + 41 3.81e-05 TCTGTCTCTA AAAATGTTAGGGTGA AAGTTCCAAA chrIV:357453-357570 + 2 3.81e-05 A AGAAGGATCGGGTGC AGCATGAAGA chrXIII:302884-303050 + 46 4.74e-05 ATCCAGGGGT GTGGGGTGTGGGCGC CCATATGCGC chrV:354775-355239 + 70 5.83e-05 CATCATACAG TGTATGTATGGGGTT AGGAGCCACC chrXV:282021-282322 + 10 6.67e-05 TCGCTTAAA TAGAGGAGTGGATGC TCAGGATAAC chrVI:55023-55326 + 7 7.13e-05 TTAGAA AGTATGTTAGGGTGA GGCATATGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDRATGTAYGGRTGT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:222004-222279 1.5e-08 41_[+3]_44 chrXIII:296831-297108 5.4e-08 46_[-3]_39 chrIV:1359450-1359763 6.6e-08 39_[-3]_46 chrII:592932-593234 8.7e-08 49_[+3]_36 chrXIII:225387-225694 8.7e-08 54_[-3]_31 chrXII:922163-922503 1.3e-07 61_[-3]_24 chrVI:65031-65300 1.3e-07 49_[+3]_36 chrXV:79803-80088 1.3e-07 50_[+3]_35 chrII:89717-89890 1.3e-07 45_[+3]_40 chrXVI:404562-404912 1.4e-07 18_[-3]_67 chrXVI:794595-794760 1.8e-07 27_[-3]_58 chrII:415547-415812 1.8e-07 51_[+3]_34 chrII:45036-45318 1.8e-07 42_[-3]_43 chrXII:932110-932458 1.8e-07 30_[+3]_55 chrIX:68262-68496 2.2e-07 20_[-3]_65 chrVIII:505854-506154 2.5e-07 44_[+3]_41 chrV:396241-396528 2.5e-07 44_[-3]_41 chrXIII:145935-146264 3e-07 34_[-3]_51 chrX:607925-608025 3e-07 24_[-3]_61 chrVII:371259-371427 3.3e-07 61_[-3]_24 chrVI:223950-224138 4e-07 60_[+3]_25 chrXI:108787-109060 4e-07 47_[-3]_38 chrXV:678857-679151 4e-07 53_[+3]_32 chrXII:710654-710832 4.5e-07 39_[-3]_46 chrIV:358135-358388 5.4e-07 35_[+3]_50 chrIX:254266-254522 5.4e-07 11_[+3]_74 chrIV:341321-341580 5.4e-07 40_[+3]_45 chrX:703305-703405 5.4e-07 49_[+3]_36 chrXII:262896-263052 5.4e-07 40_[-3]_45 chrXVI:406225-406509 5.4e-07 53_[-3]_32 chrXII:282545-282744 6.1e-07 62_[-3]_23 chrIV:1355723-1356073 6.1e-07 12_[+3]_73 chrXIII:552877-553227 7e-07 70_[-3]_15 chrXII:781499-781826 7e-07 41_[+3]_44 chrVIII:125957-126261 7e-07 42_[-3]_43 chrVII:438612-438887 7e-07 56_[+3]_29 chrVII:254164-254526 7e-07 32_[-3]_53 chrV:69081-69322 7e-07 26_[+3]_59 chrXVI:731964-732268 9.3e-07 37_[-3]_48 chrVII:149163-149478 9.3e-07 33_[+3]_52 chrXI:431412-431594 9.3e-07 40_[-3]_45 chrXIV:63153-63420 1.1e-06 79_[+3]_6 chrXIV:444495-444749 1.1e-06 46_[+3]_39 chrXIII:732068-732367 1.1e-06 38_[-3]_47 chrV:53566-53871 1.1e-06 50_[-3]_35 chrXIV:495239-495549 1.1e-06 31_[+3]_54 chrV:305827-306161 1.1e-06 40_[-3]_45 chrVII:555370-555658 1.1e-06 45_[-3]_40 chrIV:217230-217460 1.2e-06 18_[-3]_67 chrVII:726456-726734 1.2e-06 41_[-3]_44 chrVIII:75007-75331 1.4e-06 33_[-3]_52 chrXVI:302733-302944 1.4e-06 40_[-3]_45 chrIII:78422-78649 1.4e-06 54_[+3]_31 chrIV:538900-539250 1.4e-06 79_[-3]_6 chrXII:48769-49047 1.4e-06 42_[+3]_43 chrVIII:175082-175331 1.4e-06 25_[-3]_60 chrXII:796451-796805 1.4e-06 53_[+3]_32 chrXII:713190-713525 1.5e-06 62_[+3]_23 chrVIII:382953-383374 1.7e-06 2_[+3]_83 chrII:477076-477454 1.7e-06 18_[-3]_67 chrX:391959-392059 2.2e-06 31_[-3]_54 chrXVI:281653-281852 2.4e-06 63_[-3]_22 chrVII:534834-535171 2.4e-06 49_[+3]_36 chrIX:316176-316558 2.7e-06 34_[-3]_51 chrVII:648995-649302 2.7e-06 33_[+3]_52 chrX:75396-75496 2.7e-06 24_[+3]_61 chrXI:382197-382467 3.1e-06 22_[-3]_63 chrXV:92967-93297 3.1e-06 27_[+3]_58 chrIV:1300973-1301278 3.1e-06 33_[-3]_52 chrII:60876-61208 3.1e-06 78_[+3]_7 chrII:604151-604441 3.1e-06 54_[-3]_31 chrIII:178357-178601 3.1e-06 40_[+3]_45 chrV:423135-423437 3.4e-06 35_[-3]_50 chrXV:866605-866904 3.8e-06 33_[-3]_52 chrII:332365-332695 3.8e-06 44_[-3]_41 chrXVI:829010-829360 3.8e-06 83_[+3]_2 chrIV:117212-117536 4.2e-06 45_[-3]_40 chrVII:277078-277363 4.7e-06 56_[-3]_29 chrVIII:148964-149217 4.7e-06 39_[+3]_46 chrXV:216295-216656 4.7e-06 33_[-3]_52 chrIII:163502-163851 4.7e-06 18_[+3]_67 chrXV:161179-161358 4.7e-06 25_[+3]_60 chrXII:522229-522381 5.2e-06 22_[-3]_63 chrXV:505157-505461 5.2e-06 59_[-3]_26 chrXII:1041504-1041716 5.8e-06 75_[-3]_10 chrXII:897728-898001 6.4e-06 46_[-3]_39 chrIV:579114-579317 8.5e-06 60_[-3]_25 chrIV:1401297-1401564 9.4e-06 52_[-3]_33 chrIX:99679-99986 9.4e-06 25_[+3]_60 chrVIII:296916-297170 1e-05 63_[-3]_22 chrXV:94520-94807 1e-05 21_[-3]_64 chrXII:1028265-1028528 1.1e-05 51_[-3]_34 chrIV:411302-411608 1.1e-05 29_[-3]_56 chrIX:257404-257668 1.1e-05 18_[-3]_67 chrXVI:188655-188897 1.1e-05 63_[-3]_22 chrX:73441-73541 1.1e-05 43_[-3]_42 chrX:90099-90199 1.1e-05 44_[-3]_41 chrXI:67791-68008 1.2e-05 63_[-3]_22 chrVII:310545-310857 1.3e-05 34_[-3]_51 chrXVI:76389-76693 1.5e-05 49_[+3]_36 chrXVI:502981-503112 1.5e-05 51_[-3]_34 chrXIV:499263-499613 1.5e-05 42_[+3]_43 chrXI:109738-110088 1.6e-05 22_[+3]_63 chrXV:978805-979102 1.6e-05 32_[+3]_53 chrXII:568147-568314 1.6e-05 75_[-3]_10 chrXIII:551391-551769 1.7e-05 72_[-3]_13 chrX:651301-651401 1.9e-05 62_[-3]_23 chrXIV:241427-241698 2e-05 50_[-3]_35 chrII:165054-165495 2e-05 32_[-3]_53 chrXII:1019029-1019322 2e-05 15_[+3]_70 chrVII:856679-857029 2e-05 57_[+3]_28 chrXV:968149-968361 2e-05 61_[+3]_24 chrXVI:699987-700336 2.4e-05 22_[-3]_63 chrV:362265-362432 2.6e-05 51_[-3]_34 chrXV:779736-780153 2.6e-05 8_[-3]_77 chrIV:491047-491218 2.8e-05 48_[-3]_37 chrXV:253841-254079 3e-05 65_[+3]_20 chrIV:599876-600095 3e-05 16_[-3]_69 chrXII:424218-424351 3.3e-05 73_[-3]_12 chrXVI:520215-520504 3.5e-05 54_[-3]_31 chrV:23613-23806 3.5e-05 37_[-3]_48 chrIII:262769-262886 3.8e-05 40_[+3]_45 chrIV:357453-357570 3.8e-05 1_[+3]_84 chrXIII:302884-303050 4.7e-05 45_[+3]_40 chrV:354775-355239 5.8e-05 69_[+3]_16 chrXV:282021-282322 6.7e-05 9_[+3]_76 chrVI:55023-55326 7.1e-05 6_[+3]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDRATGTAYGGRTGT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RDRATGTAYGGRTGT width=15 seqs=127 chrIV:222004-222279 ( 42) AGGGTGTACGGGTGT 1 chrXIII:296831-297108 ( 47) TAGATGTATGGGTGT 1 chrIV:1359450-1359763 ( 40) GTGATGTACGGATGT 1 chrII:592932-593234 ( 50) AAGATGTATGGATGC 1 chrXIII:225387-225694 ( 55) AGAATGTACGGATGT 1 chrXII:922163-922503 ( 62) AATATGTACGGGTGT 1 chrVI:65031-65300 ( 50) AATATGTACGGGTGT 1 chrXV:79803-80088 ( 51) AATATGTACGGGTGT 1 chrII:89717-89890 ( 46) AGGGTGTATGGATGT 1 chrXVI:404562-404912 ( 19) ATGATGCATGGGTGT 1 chrXVI:794595-794760 ( 28) AATATGTATGGGTGT 1 chrII:415547-415812 ( 52) AAAATGCATGGGTGT 1 chrII:45036-45318 ( 43) AGAATGTACGGATGC 1 chrXII:932110-932458 ( 31) CAGATGTACGGATGT 1 chrIX:68262-68496 ( 21) GTAATGTACGGATGT 1 chrVIII:505854-506154 ( 45) GAAATGTATGGATGC 1 chrV:396241-396528 ( 45) AAAGTGTACGGATGT 1 chrXIII:145935-146264 ( 35) ATGGTGTATGGATGT 1 chrX:607925-608025 ( 25) AGGATGTATGGATGG 1 chrVII:371259-371427 ( 62) GAGGTGCATGGGTGC 1 chrVI:223950-224138 ( 61) AGTATGTACGGATGT 1 chrXI:108787-109060 ( 48) TAAATGTACGGATGT 1 chrXV:678857-679151 ( 54) AATATGTACGGATGT 1 chrXII:710654-710832 ( 40) GAGATGCGTGGGTGT 1 chrIV:358135-358388 ( 36) ATAATGTATGGGTGG 1 chrIX:254266-254522 ( 12) AGAATGTGTGGGTGC 1 chrIV:341321-341580 ( 41) AAAATGTACGGATGG 1 chrX:703305-703405 ( 50) TGGATGCATGGGTGC 1 chrXII:262896-263052 ( 41) TAAATGTATGGATGT 1 chrXVI:406225-406509 ( 54) GAAAGGTACGGATGT 1 chrXII:282545-282744 ( 63) AAGATGTACAGGTGT 1 chrIV:1355723-1356073 ( 13) CGAATGTATGGATGT 1 chrXIII:552877-553227 ( 71) GAGATGTATGGGTCT 1 chrXII:781499-781826 ( 42) AAAATGCACGGATGC 1 chrVIII:125957-126261 ( 43) TAGGTGTACGGATGC 1 chrVII:438612-438887 ( 57) AAAATGTATGGATGG 1 chrVII:254164-254526 ( 33) AAGATGTATGGGTTC 1 chrV:69081-69322 ( 27) GTGGGGTACGGGTGC 1 chrXVI:731964-732268 ( 38) TAAAGGTATGGGTGT 1 chrVII:149163-149478 ( 34) AGTATGTATGGGTGG 1 chrXI:431412-431594 ( 41) ATTGTGTATGGGTGT 1 chrXIV:63153-63420 ( 80) AAAATGTTCGGATGT 1 chrXIV:444495-444749 ( 47) AAGAGGTACGGATGG 1 chrXIII:732068-732367 ( 39) GCGATGTGCGGATGT 1 chrV:53566-53871 ( 51) AATATGTGTGGGTGT 1 chrXIV:495239-495549 ( 32) AGGAGGTTTGGGTGT 1 chrV:305827-306161 ( 41) TAAATGTGTGGGTGT 1 chrVII:555370-555658 ( 46) TTAATGCACGGGTGT 1 chrIV:217230-217460 ( 19) AAAATGTACGGGTTC 1 chrVII:726456-726734 ( 42) ATAGGGTATGGGTGT 1 chrVIII:75007-75331 ( 34) AAAATGTACAGGTGT 1 chrXVI:302733-302944 ( 41) AGGATGTCTGGATGT 1 chrIII:78422-78649 ( 55) GGGAGGCACGGATGC 1 chrIV:538900-539250 ( 80) GAGGGGTGTGGGTGT 1 chrXII:48769-49047 ( 43) AAGATGTACGGATCT 1 chrVIII:175082-175331 ( 26) ATGATGTATGGGTCT 1 chrXII:796451-796805 ( 54) AGGAGGCACGGATGC 1 chrXII:713190-713525 ( 63) CATATGTACGGATGT 1 chrVIII:382953-383374 ( 3) CGGATGTTCGGATGT 1 chrII:477076-477454 ( 19) TAAATGTGTGGGTGC 1 chrX:391959-392059 ( 32) GGGAGGTCTGGGTGT 1 chrXVI:281653-281852 ( 64) GAAGTGTAAGGGTGT 1 chrVII:534834-535171 ( 50) CAAATGCACGGATGC 1 chrIX:316176-316558 ( 35) ATAATGTATGGGTTC 1 chrVII:648995-649302 ( 34) GTAATGTATGGGTTC 1 chrX:75396-75496 ( 25) GTGAGGTGTGGATGT 1 chrXI:382197-382467 ( 23) GTGATGTCCGGATGC 1 chrXV:92967-93297 ( 28) CATGTGTACGGATGT 1 chrIV:1300973-1301278 ( 34) ACAGTGCACGGATGT 1 chrII:60876-61208 ( 79) GGGGTGTACAGATGT 1 chrII:604151-604441 ( 55) AAAATGTACAGATGT 1 chrIII:178357-178601 ( 41) AAAATGTACAGATGT 1 chrV:423135-423437 ( 36) AAGGTGTACGGAGGT 1 chrXV:866605-866904 ( 34) AGAATGCTTGGATGT 1 chrII:332365-332695 ( 45) GAATTGTATGGGTGC 1 chrXVI:829010-829360 ( 84) ATGATGTAAGGATGC 1 chrIV:117212-117536 ( 46) GATATGTATGGGTCT 1 chrVII:277078-277363 ( 57) CGGGTGTATGGGTCT 1 chrVIII:148964-149217 ( 40) ATGGTGCATGGGTGA 1 chrXV:216295-216656 ( 34) GGAAGGCGCGGGTGC 1 chrIII:163502-163851 ( 19) TGGGTGCGTGGGTGC 1 chrXV:161179-161358 ( 26) CCGATGTATGGGTTT 1 chrXII:522229-522381 ( 23) ATAATGTACAGATGT 1 chrXV:505157-505461 ( 60) CATATGTTTGGGTGT 1 chrXII:1041504-1041716 ( 76) GGGATGTCTGGGTTT 1 chrXII:897728-898001 ( 47) TGGAGGTACAGGTGT 1 chrIV:579114-579317 ( 61) AAAATGTTTGGGTCT 1 chrIV:1401297-1401564 ( 53) TATATGTGTGGGTGG 1 chrIX:99679-99986 ( 26) TAAATGTACTGGTGT 1 chrVIII:296916-297170 ( 64) GTGATGTACTGGTGG 1 chrXV:94520-94807 ( 22) ATATTGCATGGGTGT 1 chrXII:1028265-1028528 ( 52) TTGGTGCATGGGTGA 1 chrIV:411302-411608 ( 30) CCGGGGTGTGGGTGT 1 chrIX:257404-257668 ( 19) GTGTTGTTTGGGTGT 1 chrXVI:188655-188897 ( 64) CCGATGCATGGGTTT 1 chrX:73441-73541 ( 44) GTGGTGCAAGGATGT 1 chrX:90099-90199 ( 45) AGAATGTTCAGGTGC 1 chrXI:67791-68008 ( 64) GCGGTGCACGGATTT 1 chrVII:310545-310857 ( 35) CTGGTGTACAGATGT 1 chrXVI:76389-76693 ( 50) TGGATGTACAGGTGA 1 chrXVI:502981-503112 ( 52) TGAATGTATGGAGGC 1 chrXIV:499263-499613 ( 43) GTGGTGCACTGGTGT 1 chrXI:109738-110088 ( 23) TAAAGGTTTGGATGC 1 chrXV:978805-979102 ( 33) AGGATGAATGGGTTC 1 chrXII:568147-568314 ( 76) AAAATGTTTGGGTTG 1 chrXIII:551391-551769 ( 73) AATATGTACTGATGT 1 chrX:651301-651401 ( 63) AATATGTATGGGTTA 1 chrXIV:241427-241698 ( 51) ATGGTGTTTAGGTGC 1 chrII:165054-165495 ( 33) GCGGTGTATGGGTTA 1 chrXII:1019029-1019322 ( 16) TTAATGTTTGGGTTT 1 chrVII:856679-857029 ( 58) GCGGTGTATGGGCGG 1 chrXV:968149-968361 ( 62) GGGGTGCGTGGGCGT 1 chrXVI:699987-700336 ( 23) GTGATGTAAGGATTC 1 chrV:362265-362432 ( 52) ATATTGTATGGGTTT 1 chrXV:779736-780153 ( 9) GTGGGGTATGGGGGG 1 chrIV:491047-491218 ( 49) TGAATGATTGGGTGT 1 chrXV:253841-254079 ( 66) GCGGTGTACGGATTA 1 chrIV:599876-600095 ( 17) CAGATGCATGGATCG 1 chrXII:424218-424351 ( 74) GCAATGTACGTGTGT 1 chrXVI:520215-520504 ( 55) GCGAGGCCTGGGTGG 1 chrV:23613-23806 ( 38) GAAATGTGGGGGTGG 1 chrIII:262769-262886 ( 41) AAAATGTTAGGGTGA 1 chrIV:357453-357570 ( 2) AGAAGGATCGGGTGC 1 chrXIII:302884-303050 ( 46) GTGGGGTGTGGGCGC 1 chrV:354775-355239 ( 70) TGTATGTATGGGGTT 1 chrXV:282021-282322 ( 10) TAGAGGAGTGGATGC 1 chrVI:55023-55326 ( 7) AGTATGTTAGGGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDRATGTAYGGRTGT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 50690 bayes= 8.62803 E= 1.7e-140 55 -92 55 -89 47 -116 38 -38 30 -1363 131 -111 124 -1363 34 -328 -1363 -1363 -30 146 -1363 -1363 237 -1363 -328 -3 -1363 135 121 -230 -62 -128 -270 108 -462 80 -182 -1363 219 -328 -1363 -1363 236 -528 42 -1363 161 -1363 -1363 -303 -262 162 -1363 -181 207 -120 -228 34 -81 93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDRATGTAYGGRTGT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 127 E= 1.7e-140 0.448819 0.102362 0.283465 0.165354 0.425197 0.086614 0.251969 0.236220 0.377953 0.000000 0.480315 0.141732 0.724409 0.000000 0.244094 0.031496 0.000000 0.000000 0.157480 0.842520 0.000000 0.000000 1.000000 0.000000 0.031496 0.188976 0.000000 0.779528 0.708661 0.039370 0.125984 0.125984 0.047244 0.409449 0.007874 0.535433 0.086614 0.000000 0.881890 0.031496 0.000000 0.000000 0.992126 0.007874 0.409449 0.000000 0.590551 0.000000 0.000000 0.023622 0.031496 0.944882 0.000000 0.055118 0.811024 0.133858 0.062992 0.244094 0.110236 0.582677 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDRATGTAYGGRTGT MEME-3 regular expression -------------------------------------------------------------------------------- [AG][AGT][GA][AG]TGTA[TC]GG[GA]TG[TC] -------------------------------------------------------------------------------- Time 924.89 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:90099-90199 3.73e-02 44_[-3(1.12e-05)]_41 chrXI:490817-491094 4.96e-05 67_[-1(6.32e-09)]_12 chrVII:278334-278684 3.10e-01 100 chrVII:726456-726734 7.43e-03 41_[-3(1.18e-06)]_2_[-3(1.18e-06)]_\ 27 chrX:663972-664072 8.58e-01 100 chrXII:796451-796805 1.63e-03 53_[+3(1.35e-06)]_32 chrVII:440593-440968 1.89e-09 [-2(5.13e-09)]_22_[+1(1.46e-07)]_28 chrXII:810332-810682 2.84e-01 100 chrXII:499466-499636 7.50e-02 34_[+2(4.06e-05)]_37 chrXIV:87318-87692 8.51e-01 100 chrIV:645064-645363 1.69e-09 4_[-2(7.20e-10)]_2_[+1(5.43e-06)]_\ 44 chrX:227832-227932 6.66e-01 100 chrX:73441-73541 1.60e-02 43_[-3(1.12e-05)]_42 chrX:75396-75496 7.09e-03 24_[+3(2.75e-06)]_27_[+3(3.82e-06)]_\ 19 chrXIV:332103-332453 5.98e-01 100 chrIV:222004-222279 4.43e-05 17_[+3(5.45e-05)]_9_[+3(1.47e-08)]_\ 44 chrV:250255-250476 3.59e-02 100 chrXI:74454-74795 6.85e-05 54_[-1(2.63e-08)]_25 chrII:235117-235467 9.15e-01 100 chrIV:465190-465521 6.89e-01 100 chrIV:491047-491218 6.51e-02 48_[-3(2.82e-05)]_37 chrVII:876248-876577 1.33e-12 36_[-1(4.03e-08)]_3_[+2(3.42e-11)]_\ 11 chrIV:946088-946593 1.26e-07 26_[-1(1.45e-06)]_19_[+2(1.94e-08)]_\ 5 chrIV:599876-600095 2.32e-02 16_[-3(3.04e-05)]_69 chrXV:631781-632131 6.74e-01 100 chrIII:71432-71843 5.21e-01 100 chrII:606690-607040 8.40e-01 100 chrIX:127752-127981 3.03e-01 100 chrIV:410242-410535 3.27e-12 45_[-1(1.45e-09)]_3_[+2(4.04e-10)]_\ 2 chrIII:138637-138987 2.56e-01 100 chrXVI:242919-243269 2.29e-01 100 chrXV:300938-301286 6.69e-04 39_[-1(3.96e-07)]_40 chrIV:913980-914330 2.95e-01 100 chrXIV:726032-726455 3.26e-01 100 chrVII:555370-555658 1.54e-03 45_[-3(1.06e-06)]_40 chrXII:253088-253438 4.77e-01 100 chrX:523905-524005 4.52e-07 41_[+1(5.53e-11)]_38 chrIV:1269958-1270308 5.08e-01 100 chrV:61720-62112 8.51e-11 38_[-2(4.54e-11)]_1_[+1(2.32e-07)]_\ 11 chrXI:431412-431594 4.98e-03 40_[-3(9.26e-07)]_4_[-3(8.10e-05)]_\ 26 chrXII:734653-734930 1.35e-05 65_[-1(1.76e-09)]_14 chrIV:541317-541624 9.94e-01 100 chrVI:226601-226906 2.51e-05 31_[+1(4.03e-08)]_48 chrVIII:175082-175331 2.17e-03 25_[-3(1.35e-06)]_45_[-3(6.25e-05)] chrVIII:555842-556192 6.06e-01 100 chrIV:322979-323329 9.58e-01 100 chrXII:232742-233934 3.89e-02 41_[-3(9.79e-05)]_44 chrV:306505-306855 4.95e-02 28_[-2(5.41e-05)]_43 chrV:487255-487535 6.12e-06 [-2(2.86e-09)]_71 chrVI:225041-225391 7.27e-01 100 chrVII:882798-882975 2.64e-01 100 chrXII:592430-592760 1.70e-05 48_[+1(3.11e-09)]_31 chrXI:69766-70116 4.85e-01 100 chrXII:794253-794563 1.91e-01 100 chrXI:46679-46950 5.57e-03 16_[+1(2.01e-06)]_63 chrXV:161179-161358 1.25e-02 25_[+3(4.72e-06)]_60 chrIV:976203-976471 9.76e-02 100 chrXVI:572151-572517 1.35e-07 11_[+2(4.54e-11)]_60 chrVII:301347-301697 6.53e-01 100 chrIV:1095227-1095606 5.93e-09 18_[-2(2.69e-08)]_22_[+1(8.95e-08)]_\ 10 chrV:23613-23806 8.11e-02 37_[-3(3.54e-05)]_48 chrXIV:586252-586426 7.50e-01 100 chrXII:1041504-1041716 1.21e-02 75_[-3(5.80e-06)]_10 chrXIII:183799-184008 2.89e-07 59_[-2(4.54e-11)]_12 chrIV:1075376-1075690 1.64e-07 3_[-2(1.00e-09)]_3_[+1(3.89e-05)]_\ 44 chrXVI:769090-769548 8.29e-06 7_[+1(1.22e-08)]_72 chrIX:370260-370567 2.12e-01 100 chrIII:315568-315918 5.31e-02 100 chrXII:806557-806678 5.29e-01 100 chrXI:355871-356455 1.98e-01 100 chrII:89717-89890 5.08e-04 25_[+3(2.44e-06)]_5_[+3(1.25e-07)]_\ 40 chrXVI:188655-188897 3.76e-03 63_[-3(1.12e-05)]_22 chrIII:27671-27937 7.21e-01 100 chrIII:1111-1311 5.87e-01 100 chrIV:1362388-1362547 7.21e-01 100 chrXII:932110-932458 1.59e-04 30_[+3(1.79e-07)]_18_[+3(8.03e-07)]_\ 22 chrVII:205362-205764 1.17e-03 12_[-1(5.90e-07)]_67 chrVIII:401093-401241 9.92e-01 100 chrXII:448472-448874 1.69e-09 41_[-2(7.20e-10)]_2_[+1(5.43e-06)]_\ 7 chrIX:210652-210852 4.22e-01 100 chrXVI:856751-857074 3.47e-12 44_[-1(1.45e-09)]_3_[+2(4.04e-10)]_\ 3 chrV:425000-425350 4.46e-01 100 chrX:374438-374538 6.18e-03 15_[+1(1.85e-06)]_64 chrVII:648077-648427 4.14e-01 100 chrV:469326-469594 1.37e-04 51_[-1(1.85e-07)]_28 chrI:182429-182617 9.39e-01 100 chrV:305827-306161 1.96e-03 40_[-3(1.06e-06)]_1_[-3(3.04e-05)]_\ 29 chrIX:324176-324393 4.03e-01 100 chrVIII:555108-555458 7.57e-01 100 chrV:131025-131289 5.67e-03 20_[+1(5.43e-06)]_59 chrVIII:358387-358698 3.50e-09 [-2(5.13e-09)]_22_[+1(1.46e-07)]_28 chrXV:968149-968361 7.68e-03 61_[+3(2.05e-05)]_24 chrVIII:148364-148458 2.57e-01 94 chrV:396241-396528 1.65e-04 44_[-3(2.52e-07)]_3_[-3(8.51e-06)]_\ 23 chrX:156834-156934 9.65e-01 100 chrVII:794273-794570 5.55e-06 50_[-1(2.13e-09)]_29 chrIV:324765-325115 6.92e-01 100 chrIV:579114-579317 2.74e-02 60_[-3(8.51e-06)]_25 chrXIII:168677-169032 8.76e-05 35_[+2(1.94e-08)]_36 chrVIII:146133-146434 3.61e-12 23_[-2(4.04e-10)]_3_[+1(1.45e-09)]_\ 24 chrXV:282021-282322 1.65e-12 9_[+3(6.67e-05)]_23_[-1(2.32e-07)]_\ 1_[+2(4.54e-11)]_2 chrXIII:861187-861359 2.74e-01 100 chrXI:617988-618338 2.45e-01 100 chrVII:255263-255613 8.78e-01 100 chrV:51870-52220 8.29e-01 100 chrIV:568728-569130 9.62e-10 7_[-1(1.85e-06)]_2_[+2(7.86e-11)]_\ 41 chrX:517683-517783 2.16e-08 25_[-2(5.13e-09)]_2_[+1(1.23e-06)]_\ 23 chrIV:1270160-1270510 3.57e-01 100 chrV:423135-423437 4.14e-03 35_[-3(3.41e-06)]_50 chrXI:106459-106809 5.49e-02 100 chrXVI:585865-586215 8.96e-01 100 chrXIV:102550-103011 1.01e-05 15_[+2(2.34e-09)]_56 chrXII:784210-784526 5.69e-07 40_[-1(2.01e-10)]_39 chrXV:663730-664030 3.20e-04 29_[+1(1.85e-07)]_50 chrIV:1175718-1176015 1.87e-09 17_[-1(3.57e-07)]_3_[+2(1.72e-09)]_\ 30 chrXV:159559-160104 3.64e-01 100 chrI:168734-169084 3.66e-01 100 chrXIII:797913-798263 3.11e-01 100 chrVII:1004080-1004376 8.66e-09 42_[-1(1.12e-06)]_2_[+2(1.78e-08)]_\ 6 chrVII:856679-857029 1.04e-02 57_[+3(2.05e-05)]_28 chrXI:513253-513539 4.35e-03 31_[+1(1.04e-05)]_48 chrXII:283328-283483 6.59e-01 100 chrXIV:500340-500781 9.97e-01 100 chrX:424337-424437 4.12e-05 29_[+1(1.95e-08)]_50 chrXI:578807-579194 1.05e-09 19_[-1(1.22e-08)]_26_[+2(2.21e-07)]_\ 5 chrVI:55023-55326 2.72e-02 6_[+3(7.13e-05)]_79 chrXV:987618-987968 2.73e-01 100 chrVII:480214-480420 9.29e-01 100 chrXII:856463-856813 7.43e-01 100 chrV:69081-69322 5.19e-04 26_[+3(7.03e-07)]_39_[+3(8.64e-05)]_\ 5 chrXII:793759-794192 2.82e-01 100 chrXV:424286-424592 6.03e-01 100 chrXVI:829010-829360 1.57e-02 83_[+3(3.82e-06)]_2 chrXII:568147-568314 7.60e-03 75_[-3(1.60e-05)]_10 chrXIV:495239-495549 2.49e-03 31_[+3(1.06e-06)]_2_[+3(1.60e-05)]_\ 37 chrII:405719-406166 4.76e-09 13_[+2(7.86e-11)]_30_[-1(1.04e-05)]_\ 7 chrX:140061-140161 7.30e-01 100 chrXVI:744132-744469 8.66e-09 38_[-1(1.12e-06)]_2_[+2(1.78e-08)]_\ 10 chrIX:138315-138940 5.31e-01 100 chrXI:611055-611311 9.46e-01 100 chrVII:254164-254526 2.37e-03 32_[-3(7.03e-07)]_2_[+3(9.26e-07)]_\ 36 chrXI:258661-259012 7.31e-01 100 chrVII:310545-310857 1.73e-02 34_[-3(1.34e-05)]_[-3(1.34e-05)]_36 chrIV:219837-220187 4.44e-01 100 chrXV:779736-780153 6.23e-02 8_[-3(2.60e-05)]_77 chrV:431022-431507 1.99e-01 100 chrXII:48769-49047 2.51e-03 42_[+3(1.35e-06)]_43 chrXV:780347-780945 2.13e-01 100 chrIX:127148-127402 4.25e-01 100 chrXIII:296831-297108 2.32e-04 46_[-3(5.36e-08)]_39 chrIII:178357-178601 1.50e-02 40_[+3(3.08e-06)]_5_[-3(5.83e-05)]_\ 25 chrIII:162874-163224 8.77e-01 100 chrVIII:273345-273907 3.35e-01 100 chrIV:884241-884584 4.34e-05 3_[-1(7.48e-09)]_76 chrV:99978-100284 3.70e-03 56_[-1(1.23e-06)]_23 chrXI:162339-162697 1.04e-09 33_[-2(7.86e-11)]_2_[+1(1.85e-06)]_\ 15 chrV:117830-118241 3.52e-01 100 chrXIII:572762-573097 1.87e-09 18_[-2(1.72e-09)]_3_[+1(3.57e-07)]_\ 29 chrVII:1050266-1050422 4.66e-01 100 chrII:45036-45318 1.06e-03 42_[-3(1.79e-07)]_1_[+3(4.72e-06)]_\ 27 chrVII:401457-401615 3.17e-05 55_[-2(2.86e-09)]_16 chrV:138505-138869 3.50e-10 33_[-1(1.85e-06)]_2_[+2(7.86e-11)]_\ 15 chrIV:434108-434440 3.59e-07 54_[-2(7.86e-11)]_17 chrII:197346-197614 1.12e-05 68_[-1(1.76e-09)]_11 chrIII:30604-30774 2.63e-01 100 chrXIII:399685-399804 9.53e-01 100 chrXV:113664-113933 5.25e-05 58_[-1(5.32e-09)]_21 chrIII:127565-127871 1.04e-04 52_[-1(2.63e-08)]_27 chrVII:600768-601118 2.00e-01 100 chrXIII:372357-372595 7.84e-10 33_[-2(5.73e-10)]_4_[+1(1.85e-07)]_\ 13 chrV:354775-355239 8.17e-07 4_[+2(2.86e-09)]_36_[+3(5.83e-05)]_\ 16 chrXIV:525054-525229 3.55e-01 100 chrXV:505157-505461 2.33e-02 34_[-3(8.51e-06)]_10_[-3(5.19e-06)]_\ 26 chrXII:656844-657149 3.27e-12 2_[-2(4.04e-10)]_3_[+1(1.45e-09)]_\ 45 chrIV:1355723-1356073 2.30e-03 12_[+3(6.07e-07)]_73 chrXII:167875-168180 4.52e-07 22_[+1(5.53e-11)]_57 chrV:424793-425143 7.58e-01 100 chrXV:976358-976568 1.87e-09 12_[-1(3.57e-07)]_3_[+2(1.72e-09)]_\ 35 chrXII:875226-875585 1.08e-05 25_[-1(1.22e-08)]_54 chrXIII:302884-303050 7.53e-02 45_[+3(4.74e-05)]_40 chrVIII:17116-17466 9.92e-01 100 chrIV:488590-489029 5.82e-06 52_[-2(4.55e-10)]_19 chrXIII:298476-298824 7.42e-01 100 chrV:407890-408240 1.94e-01 100 chrXII:258719-259069 2.50e-01 100 chrVIII:16957-17267 7.20e-01 100 chrXII:713190-713525 7.87e-03 62_[+3(1.50e-06)]_23 chrXIII:290655-290972 6.12e-06 65_[+2(2.86e-09)]_6 chrXII:366102-366402 7.68e-01 100 chrXVI:520215-520504 5.95e-02 54_[-3(3.54e-05)]_31 chrXIV:631778-632064 4.84e-03 20_[+1(8.32e-06)]_59 chrV:53566-53871 4.81e-03 50_[-3(1.06e-06)]_35 chrXII:949591-949763 8.35e-01 100 chrXV:897818-898168 6.82e-01 100 chrXV:94520-94807 4.35e-02 21_[-3(1.02e-05)]_64 chrIV:1489043-1489393 3.53e-01 100 chrVII:437021-437342 2.33e-01 100 chrXV:228164-228506 1.04e-04 50_[-1(2.63e-08)]_29 chrIV:117212-117536 6.26e-03 45_[-3(4.21e-06)]_40 chrXV:87763-88113 3.62e-01 100 chrXII:522229-522381 4.96e-03 22_[-3(5.19e-06)]_10_[-3(4.72e-06)]_\ 38 chrVII:317003-317353 8.97e-01 100 chrII:410333-410683 4.48e-01 100 chrXII:731980-732253 5.20e-06 28_[-1(3.11e-09)]_51 chrXI:463602-463802 7.93e-01 100 chrIV:1201609-1201932 1.33e-12 34_[-1(4.03e-08)]_3_[+2(3.42e-11)]_\ 13 chrXIV:89310-89678 3.54e-01 100 chrIX:325709-326096 5.75e-02 63_[-2(5.76e-05)]_8 chrX:531673-531773 9.95e-01 100 chrXI:283340-283690 2.70e-01 100 chrX:415855-415955 1.35e-03 42_[+1(2.17e-06)]_37 chrIII:314235-314585 3.32e-01 100 chrXV:796975-797348 6.74e-01 100 chrXI:141886-142236 5.01e-01 100 chrII:332365-332695 1.90e-02 44_[-3(3.82e-06)]_41 chrXIII:259055-259377 4.52e-07 47_[+1(5.53e-11)]_32 chrXII:952776-953126 7.26e-01 100 chrI:166148-166549 6.26e-01 100 chrXVI:406225-406509 1.12e-03 53_[-3(5.41e-07)]_1_[-3(1.88e-05)]_\ 16 chrXIII:131756-132051 9.00e-03 17_[+1(1.85e-06)]_62 chrVII:706986-707208 7.25e-01 100 chrXIII:511261-511611 5.39e-02 100 chrIV:1360341-1360691 6.12e-01 100 chrXI:308053-308359 7.84e-10 2_[-2(5.73e-10)]_4_[+1(1.85e-07)]_\ 44 chrXVI:844096-844446 6.60e-01 100 chrVII:730997-731306 1.60e-10 40_[-1(2.63e-08)]_4_[+2(2.34e-09)]_\ 6 chrV:362265-362432 1.72e-02 51_[-3(2.60e-05)]_34 chrX:354084-354184 9.12e-04 38_[-1(1.45e-06)]_41 chrXIII:297874-298390 8.36e-01 100 chrIX:248682-249016 2.92e-06 55_[-1(4.05e-10)]_24 chrIV:1236776-1237126 4.74e-01 100 chrV:288261-288661 5.07e-01 100 chrVIII:121039-121389 1.87e-01 100 chrXV:274504-274873 1.26e-06 39_[-1(2.01e-10)]_40 chrI:139014-139323 1.36e-03 38_[-1(3.96e-07)]_41 chrXI:430751-431101 4.31e-01 100 chrIV:538900-539250 5.97e-04 79_[-3(1.35e-06)]_6 chrXIV:499263-499613 6.13e-04 42_[+3(1.46e-05)]_43 chrVII:534834-535171 5.31e-03 49_[+3(2.44e-06)]_36 chrIV:520818-521139 1.69e-09 48_[-1(5.43e-06)]_2_[+2(7.20e-10)] chrVII:738967-739289 2.17e-05 48_[-1(1.76e-09)]_31 chrIX:183329-183656 2.16e-11 12_[-2(1.25e-09)]_4_[+1(1.76e-09)]_\ 34 chrXVI:303657-304007 2.61e-01 100 chrX:651301-651401 3.15e-02 62_[-3(1.88e-05)]_23 chrX:355208-355308 9.62e-10 23_[-1(1.85e-06)]_2_[+2(7.86e-11)]_\ 25 chrXV:678857-679151 1.41e-04 53_[+3(4.02e-07)]_32 chrIII:57819-58169 1.62e-01 100 chrVII:438612-438887 3.71e-03 33_[+3(1.22e-05)]_8_[+3(7.03e-07)]_\ 29 chrXVI:821875-822107 1.13e-01 100 chrIX:141666-141942 6.67e-01 100 chrV:86410-86785 4.52e-07 61_[-1(5.53e-11)]_18 chrX:606516-606616 1.53e-01 100 chrIX:386657-386910 3.00e-01 100 chrXII:638692-639042 1.19e-01 59_[-1(6.53e-05)]_20 chrXII:810122-810472 8.77e-01 100 chrXIII:880625-880769 8.10e-01 100 chrXII:262896-263052 1.63e-03 20_[-3(1.73e-05)]_5_[-3(5.41e-07)]_\ 45 chrVII:311265-311460 7.25e-01 100 chrX:422798-422898 9.38e-04 55_[-1(3.57e-07)]_24 chrI:181103-181405 2.28e-01 100 chrVII:533828-534178 4.76e-01 100 chrXIII:667226-667363 6.99e-01 100 chrIV:992703-992999 8.51e-11 35_[-1(2.32e-07)]_1_[+2(4.54e-11)]_\ 14 chrVII:287231-287602 4.23e-03 63_[+1(2.17e-06)]_16 chrXV:353950-354261 1.06e-12 [-2(7.86e-11)]_3_[+1(5.32e-09)]_47 chrIX:388279-388373 6.82e-01 94 chrXV:903948-904686 9.43e-01 100 chrXV:79803-80088 5.15e-04 28_[+3(3.81e-05)]_7_[+3(1.25e-07)]_\ 35 chrXIV:568034-568235 7.40e-04 35_[-1(3.96e-07)]_44 chrII:191986-192369 6.45e-01 100 chrVIII:475598-475931 1.06e-07 6_[-2(1.00e-09)]_3_[+1(3.89e-05)]_\ 41 chrXIII:888947-889297 2.08e-01 100 chrXII:605197-605564 4.34e-05 76_[+1(7.48e-09)]_3 chrXI:108787-109060 9.41e-04 29_[-3(3.81e-05)]_3_[-3(4.02e-07)]_\ 38 chrIV:437631-437939 4.52e-07 41_[-1(5.53e-11)]_38 chrV:225477-225630 9.06e-01 100 chrXVI:819368-819703 2.28e-05 48_[-1(1.76e-09)]_31 chrXI:520248-520598 3.62e-02 82_[-3(9.79e-05)]_3 chrIV:234185-234614 1.35e-01 100 chrXVI:214887-215187 4.68e-01 100 chrXV:980569-980889 5.58e-08 8_[-1(3.89e-06)]_35_[+2(1.94e-08)]_\ 7 chrXIV:174321-174423 9.17e-01 100 chrII:415547-415812 9.96e-04 35_[+3(2.82e-05)]_1_[+3(1.79e-07)]_\ 34 chrII:36244-36566 1.13e-04 47_[-1(1.46e-07)]_32 chrXII:809332-809544 6.98e-01 100 chrVII:328447-328828 6.12e-06 23_[+2(2.86e-09)]_48 chrXVI:860226-860576 8.51e-11 32_[-1(2.32e-07)]_1_[+2(4.54e-11)]_\ 17 chrV:492214-492585 1.09e-09 17_[-2(3.68e-08)]_3_[+1(6.32e-09)]_\ 30 chrXV:912282-912632 5.29e-01 100 chrX:703305-703405 1.09e-03 49_[+3(5.41e-07)]_36 chrXIII:480516-480833 1.33e-12 11_[-2(3.42e-11)]_3_[+1(4.03e-08)]_\ 36 chrIX:99679-99986 7.21e-03 25_[+3(9.37e-06)]_60 chrVII:371259-371427 2.02e-03 61_[-3(3.34e-07)]_24 chrXV:978805-979102 6.42e-03 32_[+3(1.60e-05)]_53 chrXII:1019029-1019322 1.81e-02 15_[+3(2.05e-05)]_70 chrXII:374200-374558 8.63e-10 30_[-1(6.32e-09)]_3_[+2(3.68e-08)]_\ 17 chrIII:266930-267286 3.74e-01 100 chrXII:628229-628600 1.17e-03 23_[-1(5.90e-07)]_56 chrIV:802619-802944 1.69e-09 14_[-2(7.20e-10)]_2_[+1(5.43e-06)]_\ 34 chrVII:736169-736509 1.92e-03 55_[-1(1.85e-06)]_24 chrXII:199248-199658 2.51e-01 100 chrX:607925-608025 6.67e-04 24_[-3(2.95e-07)]_3_[-3(1.88e-05)]_\ 43 chrIII:78422-78649 2.33e-03 54_[+3(1.35e-06)]_31 chrVII:857298-857628 1.17e-03 52_[+1(5.90e-07)]_27 chrVII:323847-324087 7.98e-01 100 chrXIV:568344-568458 2.10e-01 100 chrVII:149163-149478 1.60e-03 33_[+3(9.26e-07)]_52 chrVII:541693-542110 6.12e-06 26_[+2(2.86e-09)]_45 chrVIII:134203-134488 1.69e-09 30_[-1(5.43e-06)]_2_[+2(7.20e-10)]_\ 18 chrXI:109738-110088 5.03e-03 22_[+3(1.60e-05)]_63 chrXIII:225387-225694 4.99e-04 54_[-3(8.73e-08)]_31 chrIV:915718-916068 8.93e-01 100 chrX:617755-617855 3.69e-06 53_[-1(3.11e-09)]_26 chrVII:930870-931171 8.99e-04 27_[+1(2.32e-07)]_52 chrII:9448-9713 2.72e-05 57_[-1(1.95e-08)]_22 chrXIV:569781-569961 3.40e-06 60_[-2(1.25e-09)]_11 chrII:89030-89380 3.62e-01 100 chrXVI:718469-718631 5.38e-01 100 chrIV:980870-981188 4.52e-07 50_[+1(5.53e-11)]_29 chrXVI:560103-560440 7.67e-05 42_[+1(1.46e-07)]_37 chrXI:431979-432329 8.47e-01 100 chrVIII:505854-506154 2.79e-04 44_[+3(2.52e-07)]_41 chrIX:68262-68496 1.70e-03 20_[-3(2.16e-07)]_65 chrXIV:301743-301959 6.46e-01 100 chrX:608651-608751 2.57e-01 100 chrIII:142018-142368 4.26e-02 100 chrXIII:732068-732367 2.77e-03 38_[-3(1.06e-06)]_47 chrI:143253-143603 4.04e-01 100 chrXV:234379-234729 9.21e-01 100 chrII:604151-604441 3.96e-03 38_[-3(2.82e-05)]_1_[-3(3.08e-06)]_\ 31 chrXV:253841-254079 9.04e-03 36_[-3(6.25e-05)]_14_[+3(3.04e-05)]_\ 20 chrII:60876-61208 1.46e-02 78_[+3(3.08e-06)]_7 chrXV:925214-925422 2.01e-01 100 chrIV:667888-668312 3.12e-06 4_[+1(1.76e-09)]_75 chrX:608449-608549 8.61e-01 100 chrXIV:675861-676029 5.07e-01 100 chrXIII:808154-808480 1.22e-03 24_[+1(5.43e-06)]_55 chrVII:557648-557998 1.23e-01 100 chrVIII:34693-35043 3.52e-01 100 chrXVI:576020-576370 4.58e-01 100 chrIV:1300973-1301278 1.44e-03 33_[-3(3.08e-06)]_52 chrV:551191-551489 1.90e-11 9_[-2(1.25e-09)]_4_[+1(1.76e-09)]_\ 37 chrII:169367-169717 9.93e-01 100 chrXII:793759-794226 3.35e-01 100 chrX:79533-79633 9.65e-01 100 chrXI:99776-99935 5.49e-02 100 chrVI:191480-191761 1.19e-06 17_[+1(2.01e-10)]_62 chrIV:44302-44652 6.01e-01 100 chrIX:257404-257668 1.56e-02 18_[-3(1.12e-05)]_13_[-3(4.40e-05)]_\ 39 chrXI:67791-68008 2.09e-02 63_[-3(1.22e-05)]_22 chrIV:519635-519877 3.43e-05 41_[-1(1.95e-08)]_38 chrX:233772-233872 3.20e-05 64_[-1(6.32e-09)]_15 chrXIV:703307-703670 9.85e-01 100 chrVI:53999-54349 2.94e-01 100 chrV:377958-378344 2.27e-01 100 chrXVI:173707-174057 1.60e-01 100 chrXV:977929-978279 7.07e-01 100 chrXII:899505-899598 1.65e-01 93 chrIV:619871-620181 1.09e-09 7_[-2(3.68e-08)]_3_[+1(6.32e-09)]_\ 40 chrXIII:500076-500186 9.39e-01 100 chrIII:163502-163851 3.75e-03 18_[+3(4.72e-06)]_15_[+3(1.73e-05)]_\ 37 chrV:85910-86097 2.00e-01 100 chrXIII:195986-196303 8.91e-04 50_[+1(3.96e-07)]_29 chrXIV:772019-772321 2.80e-01 100 chrVIII:35909-36259 9.04e-01 100 chrXII:637436-637544 3.13e-01 100 chrXII:811194-811544 7.75e-01 100 chrIV:1080389-1080780 4.34e-01 100 chrXVI:581919-582224 1.33e-12 45_[-1(4.03e-08)]_3_[+2(3.42e-11)]_\ 2 chrXIV:351913-352350 8.08e-01 100 chrVII:405421-405702 9.42e-01 100 chrVIII:125957-126261 2.66e-03 42_[-3(7.03e-07)]_43 chrXII:962903-963208 5.84e-06 24_[+1(1.95e-08)]_55 chrIII:295331-295667 1.06e-12 39_[-1(5.32e-09)]_3_[+2(7.86e-11)]_\ 8 chrVII:661592-661898 2.48e-03 58_[-1(1.12e-06)]_21 chrXIII:504909-505110 2.28e-01 100 chrVIII:296916-297170 1.97e-02 39_[+3(8.64e-05)]_9_[-3(1.02e-05)]_\ 22 chrXII:459564-459939 1.96e-03 21_[-1(9.33e-06)]_7_[-1(1.66e-05)]_\ 30 chrXIII:306529-306851 1.31e-01 100 chrXV:832483-832709 9.71e-01 100 chrXV:288037-288393 3.79e-08 31_[-1(1.45e-06)]_19_[+2(1.94e-08)] chrXIII:586573-586856 9.19e-04 19_[+1(1.85e-07)]_60 chrIV:1401297-1401564 1.61e-02 37_[-3(1.34e-05)]_[-3(9.37e-06)]_33 chrIV:357453-357570 4.42e-03 1_[+3(3.81e-05)]_84 chrVI:137397-137680 1.60e-10 12_[-2(2.34e-09)]_4_[+1(2.63e-08)]_\ 34 chrXIII:540459-540725 2.21e-01 100 chrIV:1359450-1359763 6.09e-04 39_[-3(6.63e-08)]_46 chrVII:545411-545761 8.31e-01 100 chrII:408549-409024 1.70e-01 100 chrVIII:237767-238092 8.40e-05 34_[+1(1.46e-07)]_45 chrVII:700504-701207 9.73e-01 100 chrV:441857-442577 9.67e-01 100 chrXVI:810557-810802 1.04e-04 51_[-1(2.63e-08)]_28 chrVIII:115168-115449 4.38e-01 100 chrIII:168176-168595 1.91e-03 11_[+1(5.43e-06)]_68 chrXII:253985-254110 8.17e-01 100 chrXI:769-1119 4.78e-01 100 chrIII:227797-228136 2.18e-06 30_[-1(4.05e-10)]_49 chrIV:1490102-1490407 6.80e-01 100 chrII:477076-477454 6.97e-03 18_[-3(1.73e-06)]_67 chrX:745119-745219 8.80e-01 100 chrXIII:626639-626989 1.91e-01 100 chrXI:379645-379873 6.90e-06 [+2(5.73e-10)]_71 chrII:159841-159971 1.25e-01 100 chrVIII:75761-75876 5.96e-01 100 chrVIII:121320-121670 1.30e-01 100 chrVII:346212-346615 5.28e-01 100 chrXII:975918-976177 1.60e-10 [-2(2.34e-09)]_4_[+1(2.63e-08)]_46 chrIV:1256936-1257239 8.47e-04 16_[+1(9.42e-07)]_63 chrXVI:502981-503112 1.17e-02 51_[-3(1.46e-05)]_34 chrXV:92967-93297 7.45e-04 1_[+3(7.03e-06)]_11_[+3(3.08e-06)]_\ 58 chrXII:424218-424351 5.67e-02 73_[-3(3.29e-05)]_12 chrXIII:551391-551769 3.28e-02 10_[+3(3.04e-05)]_47_[-3(1.73e-05)]_\ 13 chrXV:226528-226823 7.28e-11 [-2(4.54e-11)]_1_[+1(2.32e-07)]_49 chrVII:878598-878976 4.23e-03 52_[+1(2.17e-06)]_27 chrII:394276-394626 9.03e-01 100 chrXII:370471-370824 6.04e-01 100 chrXIV:776772-777122 5.59e-01 100 chrIV:118366-118716 2.17e-01 100 chrV:284952-285174 7.63e-01 100 chrXV:384697-385047 8.69e-01 100 chrVII:648995-649302 5.82e-03 33_[+3(2.75e-06)]_[+3(1.46e-05)]_37 chrVIII:122241-122591 8.90e-01 100 chrIX:197445-197741 4.85e-01 100 chrV:174683-175033 9.77e-01 100 chrX:139388-139488 5.89e-01 100 chrI:72001-72351 7.41e-01 100 chrXV:619911-620261 7.40e-01 100 chrXVI:404562-404912 9.90e-04 18_[-3(1.44e-07)]_67 chrXII:838600-838844 2.39e-01 100 chrVII:366103-366484 2.58e-01 100 chrXII:214806-215100 1.48e-05 26_[+1(2.13e-09)]_53 chrXV:571820-572119 3.75e-03 43_[-1(1.04e-05)]_36 chrVII:914947-915087 9.51e-01 100 chrXV:93969-94319 8.24e-01 100 chrVI:65031-65300 7.77e-04 49_[+3(1.25e-07)]_36 chrXIV:107078-107416 3.84e-01 100 chrVI:224841-225191 1.55e-01 100 chrXIII:761831-762181 7.33e-01 100 chrXV:159559-160098 2.66e-01 100 chrII:229376-229726 1.47e-01 100 chrX:182020-182120 3.81e-01 100 chrVII:823322-823663 7.84e-10 44_[-1(1.85e-07)]_4_[+2(5.73e-10)]_\ 2 chrV:141042-141383 3.66e-01 100 chrXIII:253367-253569 6.83e-01 100 chrVIII:103938-104198 1.93e-01 38_[-3(9.79e-05)]_47 chrIV:83401-83686 4.65e-04 59_[-1(2.32e-07)]_20 chrVIII:132920-133093 9.94e-01 100 chrXIII:747764-748123 1.04e-09 13_[-2(7.86e-11)]_2_[+1(1.85e-06)]_\ 35 chrXII:447909-448259 2.97e-01 100 chrVIII:388800-389001 2.18e-05 57_[-2(1.94e-08)]_14 chrII:301263-301613 7.37e-01 100 chrVII:774205-774572 3.27e-12 15_[-1(1.45e-09)]_3_[+2(4.04e-10)]_\ 32 chrXII:426974-427289 2.17e-02 55_[-1(1.04e-05)]_24 chrXIV:721219-721569 3.45e-02 39_[+2(5.41e-05)]_32 chrXV:438510-438850 1.05e-09 17_[-1(1.22e-08)]_26_[+2(2.21e-07)]_\ 7 chrXI:382197-382467 6.34e-06 22_[-3(3.08e-06)]_37_[+1(6.55e-06)]_\ 5 chrXVI:405239-405566 4.83e-01 100 chrIX:300151-300443 4.25e-04 27_[+1(4.03e-08)]_52 chrIII:177114-177464 5.29e-01 100 chrII:479182-479275 6.48e-01 93 chrVI:82340-82614 8.74e-01 100 chrXVI:731964-732268 1.63e-03 37_[-3(9.26e-07)]_48 chrXV:216295-216656 8.41e-03 33_[-3(4.72e-06)]_1_[-3(9.79e-05)]_\ 36 chrVII:479123-479473 9.21e-01 100 chrIV:217230-217460 3.10e-03 18_[-3(1.18e-06)]_67 chrVIII:466836-467123 5.23e-03 65_[-1(1.12e-06)]_14 chrVII:122130-122478 1.33e-12 19_[-1(4.03e-08)]_3_[+2(3.42e-11)]_\ 28 chrIII:292746-293096 1.00e+00 100 chrXI:302762-303099 5.14e-04 42_[-1(2.17e-06)]_37 chrII:680426-680514 2.14e-02 88 chrX:391959-392059 1.26e-03 31_[-3(2.20e-06)]_54 chrXI:518865-519192 6.50e-02 100 chrX:204583-204683 5.92e-03 68_[-1(1.04e-05)]_11 chrXI:283565-283915 4.79e-01 100 chrXI:334210-334560 8.05e-01 100 chrXIV:519022-519133 7.06e-01 100 chrIII:123490-123797 7.50e-03 29_[+1(8.32e-06)]_50 chrXIV:275965-276315 5.55e-01 100 chrXII:781499-781826 2.09e-03 23_[+3(8.10e-05)]_3_[+3(7.03e-07)]_\ 44 chrVII:609722-610039 4.01e-01 100 chrXVI:56046-56428 1.45e-03 61_[+1(2.17e-06)]_18 chrVII:845492-845814 1.79e-03 50_[-1(2.32e-07)]_29 chrXI:103239-103589 3.58e-01 100 chrII:642935-643232 1.10e-02 19_[+1(3.89e-06)]_60 chrVIII:148964-149217 4.55e-03 39_[+3(4.72e-06)]_46 chrXV:383265-383435 7.14e-01 100 chrIV:1150749-1151073 6.35e-07 54_[+1(2.01e-10)]_25 chrVI:180826-181196 8.51e-11 27_[-2(4.54e-11)]_1_[+1(2.32e-07)]_\ 22 chrIX:388656-388870 9.88e-01 100 chrXIV:632464-632781 1.60e-10 31_[-1(2.63e-08)]_4_[+2(2.34e-09)]_\ 15 chrXI:551969-552319 7.10e-01 100 chrII:266233-266573 1.06e-12 29_[-1(5.32e-09)]_3_[+2(7.86e-11)]_\ 18 chrX:608866-608966 8.86e-01 100 chrXII:522685-523035 4.57e-01 100 chrXV:866605-866904 2.27e-03 33_[-3(3.82e-06)]_1_[+3(6.36e-06)]_\ 36 chrVI:162088-162359 1.38e-03 59_[-1(2.32e-07)]_20 chrVI:157855-158160 8.00e-04 24_[+1(1.46e-07)]_55 chrXIII:652507-652924 1.24e-02 100 chrIII:177314-177664 3.10e-01 100 chrXVI:210124-210407 2.75e-01 100 chrIII:149774-150087 2.16e-08 44_[-1(1.23e-06)]_2_[+2(5.13e-09)]_\ 4 chrXIV:444495-444749 2.95e-03 30_[+3(3.08e-06)]_1_[+3(1.06e-06)]_\ 39 chrXIII:379235-379569 1.35e-03 30_[+1(2.17e-06)]_49 chrX:542853-542953 1.06e-03 43_[+1(1.45e-06)]_36 chrVII:185641-185905 1.33e-12 5_[-2(3.42e-11)]_3_[+1(4.03e-08)]_\ 42 chrX:115864-115964 4.41e-01 100 chrXII:282545-282744 1.82e-03 62_[-3(6.07e-07)]_2_[-3(1.02e-05)]_\ 6 chrVII:115361-115638 5.04e-05 43_[-1(1.22e-08)]_36 chrXI:140933-141250 5.14e-01 100 chrX:59048-59148 8.17e-05 14_[+1(5.32e-09)]_65 chrXII:818503-818771 1.64e-03 49_[+2(4.06e-05)]_22 chrVIII:381617-381925 5.48e-01 100 chrXI:103037-103387 4.03e-01 100 chrX:390944-391044 5.05e-04 30_[+1(3.57e-07)]_49 chrXII:300384-300640 1.25e-01 100 chrVII:319742-319933 5.48e-02 21_[+2(2.02e-05)]_50 chrXVI:699987-700336 4.37e-03 22_[-3(2.41e-05)]_20_[-3(5.45e-05)]_\ 28 chrIV:411302-411608 1.46e-03 29_[-3(1.12e-05)]_13_[-3(6.25e-05)]_\ 28 chrVII:807104-807454 6.83e-01 100 chrIII:262769-262886 7.17e-03 40_[+3(3.81e-05)]_45 chrVII:766215-766421 5.00e-02 100 chrIV:341321-341580 2.34e-04 40_[+3(5.41e-07)]_45 chrXI:245795-245924 7.00e-01 100 chrII:555874-556224 4.67e-01 100 chrXV:968937-969128 9.50e-01 100 chrII:645018-645319 6.76e-02 100 chrXV:742243-742593 8.27e-01 100 chrXII:897728-898001 1.17e-02 46_[-3(6.36e-06)]_39 chrV:461891-462134 8.30e-01 100 chrI:68303-68653 5.67e-01 100 chrV:434462-434755 4.93e-01 100 chrXIII:759309-759659 4.50e-01 100 chrXVI:76389-76693 2.05e-02 49_[+3(1.46e-05)]_36 chrXV:487403-487636 8.94e-01 100 chrIX:316176-316558 7.17e-03 34_[-3(2.75e-06)]_51 chrII:88219-88489 8.85e-01 100 chrXII:92394-92716 9.70e-04 47_[-1(3.96e-07)]_32 chrII:226946-227309 4.52e-07 2_[-1(5.53e-11)]_77 chrVII:439304-439654 2.50e-01 100 chrXIII:552877-553227 2.01e-04 70_[-3(7.03e-07)]_15 chrXIV:110633-110988 9.84e-01 100 chrVI:204587-204937 3.83e-01 100 chrXIII:872736-872915 2.17e-01 100 chrXVI:281653-281852 1.14e-02 47_[-3(4.72e-06)]_1_[-3(2.44e-06)]_\ 22 chrXII:1028265-1028528 2.57e-02 51_[-3(1.12e-05)]_34 chrIX:427547-427799 2.85e-01 100 chrIX:174936-175170 1.06e-12 32_[-1(5.32e-09)]_3_[+2(7.86e-11)]_\ 15 chrIX:255290-255640 2.81e-01 100 chrXI:517784-518126 4.87e-01 100 chrVII:516242-516615 2.93e-01 100 chrVIII:382953-383374 1.56e-03 2_[+3(1.73e-06)]_83 chrIX:427228-427493 5.67e-01 100 chrVII:412175-412524 6.26e-10 9_[-2(5.73e-10)]_4_[+1(1.85e-07)]_\ 37 chrXVI:880181-880610 8.81e-01 100 chrII:165054-165495 3.39e-02 32_[-3(2.05e-05)]_53 chrX:74127-74227 2.30e-01 100 chrXVI:302733-302944 6.15e-03 40_[-3(1.35e-06)]_45 chrX:197223-197323 3.27e-12 31_[-2(4.04e-10)]_3_[+1(1.45e-09)]_\ 16 chrVI:101227-101519 1.10e-03 57_[-1(3.96e-07)]_22 chrXV:619275-619421 6.38e-01 100 chrV:176958-177310 6.12e-06 42_[+2(2.86e-09)]_29 chrXIV:96117-96475 8.19e-08 9_[-2(1.27e-08)]_2_[+1(5.79e-06)]_\ 13_[-1(4.34e-05)]_5 chrIV:117822-118172 5.00e-01 100 chrXII:795218-795411 6.38e-01 100 chrXIII:222987-223337 1.58e-01 100 chrXIV:529511-529779 3.61e-01 100 chrVIII:75007-75331 2.38e-03 33_[-3(1.35e-06)]_52 chrXII:710654-710832 2.68e-03 39_[-3(4.53e-07)]_46 chrXV:29186-29536 6.13e-01 100 chrV:399248-399533 2.67e-01 100 chrVII:365078-365428 3.46e-01 100 chrXIV:63153-63420 1.10e-03 79_[+3(1.06e-06)]_6 chrXVI:794595-794760 5.93e-04 9_[-3(4.53e-07)]_3_[-3(1.79e-07)]_\ 58 chrVII:277078-277363 1.50e-03 56_[-3(4.72e-06)]_29 chrVIII:115967-116344 1.06e-12 16_[-2(7.86e-11)]_3_[+1(5.32e-09)]_\ 31 chrXIII:145935-146264 5.35e-04 34_[-3(2.95e-07)]_15_[-3(1.60e-05)]_\ 21 chrI:142862-142950 6.84e-01 88 chrXIV:241427-241698 4.40e-03 50_[-3(2.05e-05)]_35 chrIX:254266-254522 1.48e-03 11_[+3(5.41e-07)]_35_[+3(8.64e-05)]_\ 24 chrII:326617-327020 2.30e-08 38_[-2(4.55e-10)]_4_[+1(9.33e-06)]_\ 8 chrXI:259646-259996 8.98e-01 100 chrIV:358135-358388 2.04e-03 35_[+3(5.41e-07)]_50 chrXIV:500020-500149 7.64e-01 100 chrII:592932-593234 1.62e-04 32_[+3(1.60e-05)]_2_[+3(8.73e-08)]_\ 36 chrXII:922163-922503 1.75e-04 35_[-3(4.72e-06)]_11_[-3(1.25e-07)]_\ 24 chrVI:223950-224138 1.63e-03 60_[+3(4.02e-07)]_25 chrIII:82403-82666 5.21e-01 100 chrX:76109-76209 7.96e-01 100 chrXVI:66992-67342 9.42e-02 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************