Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.020296 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.06379 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.066626 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.011117 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background Finished invoke: name: bg status: 0 time: 0.008777 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 519.346142 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/seqs-shuffled Finished invoke: name: dreme status: 0 time: 64.150397 Invoking: centrimo -seqlen 336 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.17604 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.477039 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -primary KTAAYSDKRRGRTCMBSGGTTCGAYYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.377724 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -primary DTRGYBYAGTGGKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.49622 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -primary RARATGTAYGGRTGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.358889 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -primary AACTKGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.263117 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -primary RCGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.236931 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -primary CAASGATG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.209826 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -primary CTCTMCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.213093 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -primary AARAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.238277 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -primary GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.246708 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -primary ATCTTWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.232968 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -primary CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.262552 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -primary CGTMTGAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.213456 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -primary CACCGTGS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.203843 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -primary CGGTRGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.228574 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -primary ACACTAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.257549 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -primary CTGAGCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.213197 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -primary AGAYCGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 0.211961 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/spamo_out_18 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -primary KAGACCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: spamo18 status: 0 time: 0.241125 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/spamo_out_19 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background -primary CGCGGGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml Finished invoke: name: spamo19 status: 0 time: 0.201307 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background --motif KTAAYSDKRRGRTCMBSGGTTCGAYYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa Finished invoke: name: fimo1 status: 0 time: 0.203349 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background --motif DTRGYBYAGTGGKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa Finished invoke: name: fimo2 status: 0 time: 0.170477 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background --motif RARATGTAYGGRTGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa Finished invoke: name: fimo3 status: 0 time: 0.17082 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background --motif AACTKGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa Finished invoke: name: fimo4 status: 0 time: 0.084419 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background --motif RCGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa Finished invoke: name: fimo5 status: 0 time: 0.088214 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background --motif CAASGATG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa Finished invoke: name: fimo6 status: 0 time: 0.082025 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background --motif CTCTMCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa Finished invoke: name: fimo7 status: 0 time: 0.081783 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background --motif AARAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa Finished invoke: name: fimo8 status: 0 time: 0.067547 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background --motif GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa Finished invoke: name: fimo9 status: 0 time: 0.083469 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background --motif ATCTTWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa Finished invoke: name: fimo10 status: 0 time: 0.066955 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background --motif CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa Finished invoke: name: fimo11 status: 0 time: 0.067767 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background --motif CGTMTGAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa Finished invoke: name: fimo12 status: 0 time: 0.081796 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background --motif CACCGTGS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa Finished invoke: name: fimo13 status: 0 time: 0.083191 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background --motif CGGTRGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa Finished invoke: name: fimo14 status: 0 time: 0.082161 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background --motif ACACTAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa Finished invoke: name: fimo15 status: 0 time: 0.067385 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background --motif CTGAGCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa Finished invoke: name: fimo16 status: 0 time: 0.082205 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background --motif AGAYCGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa Finished invoke: name: fimo17 status: 0 time: 0.092117 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/fimo_out_18 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background --motif KAGACCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa Finished invoke: name: fimo18 status: 0 time: 0.084127 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/fimo_out_19 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/background --motif CGCGGGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/RM11-1A--SRB8.fa Finished invoke: name: fimo19 status: 0 time: 0.084033 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SRB8/summary.tsv Finished invoke: name: summary status: 0 time: 0.169376 Done