******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SOK2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrXV:216288-216660 1.0000 100 chrIV:992692-993005 1.0000 100 chrIV:1467542-1467952 1.0000 100 chrVII:413347-413675 1.0000 100 chrXII:793753-795223 1.0000 100 chrXII:460433-460810 1.0000 100 chrVII:328432-328870 1.0000 100 chrXV:88176-88586 1.0000 100 chrXIV:716122-716636 1.0000 100 chrIX:248666-249421 1.0000 100 chrXVI:431854-432239 1.0000 100 chrXV:160327-160737 1.0000 100 chrXV:1028732-1029069 1.0000 100 chrVIII:455535-456128 1.0000 100 chrX:139163-139263 1.0000 100 chrXIII:652330-653005 1.0000 100 chrIV:889183-889339 1.0000 100 chrVII:700492-701202 1.0000 100 chrXIV:502905-503315 1.0000 100 chrX:617762-617862 1.0000 100 chrXII:950506-951033 1.0000 100 chrV:434445-434779 1.0000 100 chrXIII:914885-915530 1.0000 100 chrXIV:10218-10440 1.0000 100 chrXII:729861-730271 1.0000 100 chrXV:443754-444105 1.0000 100 chrXIII:288775-289185 1.0000 100 chrXVI:585763-587065 1.0000 100 chrI:166136-166457 1.0000 100 chrIV:1239797-1240207 1.0000 100 chrII:376069-376192 1.0000 100 chrVII:555355-555675 1.0000 100 chrV:78969-79071 1.0000 100 chrIV:722289-722887 1.0000 100 chrV:423119-423455 1.0000 100 chrVIII:172764-173174 1.0000 100 chrXII:704160-704650 1.0000 100 chrXIII:759325-759524 1.0000 100 chrVIII:531452-531773 1.0000 100 chrVIII:451498-451770 1.0000 100 chrVII:405406-405681 1.0000 100 chrXIII:431717-432309 1.0000 100 chrXV:594261-594575 1.0000 100 chrXI:385164-385437 1.0000 100 chrV:396841-397251 1.0000 100 chrXV:1028074-1028293 1.0000 100 chrXV:605460-605870 1.0000 100 chrII:226934-227284 1.0000 100 chrIV:356530-356940 1.0000 100 chrVII:148477-148629 1.0000 100 chrXV:236149-236478 1.0000 100 chrV:61224-61379 1.0000 100 chrXIV:518836-519246 1.0000 100 chrXII:899239-899700 1.0000 100 chrVII:458-691 1.0000 100 chrIV:550888-551247 1.0000 100 chrV:487240-487549 1.0000 100 chrI:77108-77518 1.0000 100 chrV:143827-144170 1.0000 100 chrXI:99750-99998 1.0000 100 chrIV:601255-601665 1.0000 100 chrVII:311037-312205 1.0000 100 chrXIV:355235-355476 1.0000 100 chrXII:808912-809599 1.0000 100 chrV:85092-85567 1.0000 100 chrXII:1019018-1019328 1.0000 100 chrV:302880-303290 1.0000 100 chrII:169199-169609 1.0000 100 chrXIV:662132-662542 1.0000 100 chrVII:787100-787202 1.0000 100 chrXIII:279863-280231 1.0000 100 chrXVI:280567-281499 1.0000 100 chrXIV:501117-501424 1.0000 100 chrVI:225118-225316 1.0000 100 chrXII:713185-713533 1.0000 100 chrXIII:290652-290987 1.0000 100 chrXIV:303217-303650 1.0000 100 chrXIII:225374-225699 1.0000 100 chrXII:232101-234077 1.0000 100 chrXIV:102557-102963 1.0000 100 chrXI:383888-384298 1.0000 100 chrIV:359411-359782 1.0000 100 chrII:235113-235523 1.0000 100 chrXII:602593-602732 1.0000 100 chrVIII:150929-151339 1.0000 100 chrXII:499030-499660 1.0000 100 chrXVI:694543-694953 1.0000 100 chrXVI:856744-857112 1.0000 100 chrXII:722856-723200 1.0000 100 chrII:408694-408958 1.0000 100 chrV:139354-139465 1.0000 100 chrIX:183361-183672 1.0000 100 chrXVI:173302-174003 1.0000 100 chrVII:544433-544825 1.0000 100 chrI:169405-169815 1.0000 100 chrII:89071-89197 1.0000 100 chrXIII:251800-252210 1.0000 100 chrIII:107197-107675 1.0000 100 chrV:69039-69441 1.0000 100 chrXIV:569788-569981 1.0000 100 chrIV:1450299-1450709 1.0000 100 chrVII:545479-545785 1.0000 100 chrXV:841741-841914 1.0000 100 chrXV:348814-349345 1.0000 100 chrV:131002-131305 1.0000 100 chrXI:99873-100283 1.0000 100 chrIV:230565-230834 1.0000 100 chrII:414811-415221 1.0000 100 chrXVI:303713-303927 1.0000 100 chrII:88065-88625 1.0000 100 chrIV:1095236-1095610 1.0000 100 chrVII:823323-823670 1.0000 100 chrXII:731971-732272 1.0000 100 chrVII:779734-779872 1.0000 100 chrII:604699-605031 1.0000 100 chrXI:355114-356571 1.0000 100 chrXVI:560053-560440 1.0000 100 chrXIII:550003-550413 1.0000 100 chrXV:832413-832802 1.0000 100 chrVI:223354-223514 1.0000 100 chrIII:142621-142917 1.0000 100 chrXV:866578-866917 1.0000 100 chrXI:313302-313620 1.0000 100 chrXVI:576060-576399 1.0000 100 chrVII:806792-807202 1.0000 100 chrVII:481642-482674 1.0000 100 chrVII:989705-990474 1.0000 100 chrVI:221786-222036 1.0000 100 chrXVI:572137-572546 1.0000 100 chrXVI:810569-810839 1.0000 100 chrXVI:587003-587652 1.0000 100 chrXIV:217204-217434 1.0000 100 chrVIII:379522-379945 1.0000 100 chrII:605756-606107 1.0000 100 chrXIII:297347-298869 1.0000 100 chrVII:648978-649322 1.0000 100 chrIV:221995-222277 1.0000 100 chrIX:177619-178034 1.0000 100 chrVI:157841-158167 1.0000 100 chrV:424780-425191 1.0000 100 chrXV:779733-781037 1.0000 100 chrX:197217-197317 1.0000 100 chrXII:709737-709907 1.0000 100 chrX:123450-123550 1.0000 100 chrVIII:48188-48654 1.0000 100 chrXVI:770691-770947 1.0000 100 chrIV:619838-620188 1.0000 100 chrIV:45664-46074 1.0000 100 chrXV:407606-407966 1.0000 100 chrX:651944-652044 1.0000 100 chrIV:356405-356633 1.0000 100 chrXII:797021-797353 1.0000 100 chrX:606081-606181 1.0000 100 chrIV:368849-369188 1.0000 100 chrII:405712-406134 1.0000 100 chrVI:82196-82438 1.0000 100 chrI:141701-142108 1.0000 100 chrXI:326738-327233 1.0000 100 chrV:174701-175052 1.0000 100 chrVIII:296887-297189 1.0000 100 chrII:301181-301749 1.0000 100 chrXVI:840623-840753 1.0000 100 chrXV:110300-110519 1.0000 100 chrVII:845487-845816 1.0000 100 chrXIII:754445-754711 1.0000 100 chrXIV:499406-499564 1.0000 100 chrV:441837-442582 1.0000 100 chrXIII:555979-556389 1.0000 100 chrIV:1269984-1270381 1.0000 100 chrIII:149767-150088 1.0000 100 chrIV:1468093-1468503 1.0000 100 chrIV:357402-357756 1.0000 100 chrXII:930622-931032 1.0000 100 chrIV:519610-519898 1.0000 100 chrVII:1000061-1000528 1.0000 100 chrXV:254518-254634 1.0000 100 chrIV:1237231-1237641 1.0000 100 chrVII:878559-878984 1.0000 100 chrXIV:631750-632072 1.0000 100 chrII:556841-557251 1.0000 100 chrXIII:305957-307168 1.0000 100 chrVII:324503-325005 1.0000 100 chrXII:263568-263676 1.0000 100 chrXIII:267993-268258 1.0000 100 chrVII:648031-648441 1.0000 100 chrVII:557680-557913 1.0000 100 chrXVI:502685-503317 1.0000 100 chrXII:348059-348450 1.0000 100 chrXVI:404215-404497 1.0000 100 chrVII:281747-282157 1.0000 100 chrXII:728185-728664 1.0000 100 chrVIII:556070-556480 1.0000 100 chrXIII:626499-626965 1.0000 100 chrXII:818492-818805 1.0000 100 chrVIII:146102-146442 1.0000 100 chrII:394160-394570 1.0000 100 chrX:73438-73538 1.0000 100 chrXIV:568030-568236 1.0000 100 chrXV:989038-989557 1.0000 100 chrXII:796450-796811 1.0000 100 chrVII:545386-545785 1.0000 100 chrIII:227772-228227 1.0000 100 chrII:702173-702463 1.0000 100 chrXV:678864-679160 1.0000 100 chrXV:27312-27722 1.0000 100 chrV:79658-80068 1.0000 100 chrXVI:302727-302951 1.0000 100 chrXII:628230-628654 1.0000 100 chrX:291199-291299 1.0000 100 chrXI:552106-552516 1.0000 100 chrXV:836745-836878 1.0000 100 chrXV:81004-81207 1.0000 100 chrXII:781488-781835 1.0000 100 chrIV:322977-323338 1.0000 100 chrIV:579688-579989 1.0000 100 chrIX:316914-317324 1.0000 100 chrVII:806224-806634 1.0000 100 chrVIII:386198-386608 1.0000 100 chrIV:1434404-1434748 1.0000 100 chrXII:712388-712798 1.0000 100 chrXI:21397-21732 1.0000 100 chrIX:316169-316572 1.0000 100 chrIV:1256911-1257257 1.0000 100 chrXII:283245-283561 1.0000 100 chrVIII:382949-383291 1.0000 100 chrIV:1402870-1403440 1.0000 100 chrI:28496-28974 1.0000 100 chrVII:727319-727506 1.0000 100 chrXI:558714-559030 1.0000 100 chrXVI:860227-860561 1.0000 100 chrII:592925-593248 1.0000 100 chrXV:353934-354267 1.0000 100 chrX:120472-120572 1.0000 100 chrII:413939-414085 1.0000 100 chrVIII:56087-56339 1.0000 100 chrXVI:575161-575425 1.0000 100 chrXV:384604-385096 1.0000 100 chrIX:386539-387050 1.0000 100 chrXI:614056-614466 1.0000 100 chrXVI:775664-775993 1.0000 100 chrXVI:114421-114825 1.0000 100 chrI:185691-186027 1.0000 100 chrVII:310533-310912 1.0000 100 chrIV:1345191-1345792 1.0000 100 chrIV:385863-387291 1.0000 100 chrXI:146853-147354 1.0000 100 chrIV:1201585-1201930 1.0000 100 chrIV:234219-234629 1.0000 100 chrVIII:150727-151137 1.0000 100 chrXV:113653-113956 1.0000 100 chrVIII:381474-382161 1.0000 100 chrIX:317914-318324 1.0000 100 chrXV:710086-710342 1.0000 100 chrXIV:426871-427224 1.0000 100 chrVII:366059-366619 1.0000 100 chrVIII:74991-75341 1.0000 100 chrXV:87762-88172 1.0000 100 chrV:42120-42509 1.0000 100 chrXV:31785-32059 1.0000 100 chrV:135289-135639 1.0000 100 chrXV:92126-92536 1.0000 100 chrX:227706-227806 1.0000 100 chrXV:32467-32653 1.0000 100 chrIX:129793-130246 1.0000 100 chrXIV:96119-96480 1.0000 100 chrV:152539-153310 1.0000 100 chrII:167963-168165 1.0000 100 chrX:115844-115944 1.0000 100 chrXVI:821628-822348 1.0000 100 chrXIII:296810-297134 1.0000 100 chrXI:326289-326802 1.0000 100 chrVII:882401-883018 1.0000 100 chrXIII:91836-92111 1.0000 100 chrXIII:163092-163502 1.0000 100 chrXVI:135438-135848 1.0000 100 chrXV:796952-797349 1.0000 100 chrIV:980817-981182 1.0000 100 chrXIV:234322-234504 1.0000 100 chrVI:101212-101563 1.0000 100 chrXVI:581889-582265 1.0000 100 chrIII:228513-229035 1.0000 100 chrXV:288046-288410 1.0000 100 chrV:396239-396546 1.0000 100 chrXV:514428-514770 1.0000 100 chrV:79458-79868 1.0000 100 chrXII:656823-657144 1.0000 100 chrXIV:415820-416230 1.0000 100 chrIV:1305492-1305821 1.0000 100 chrXII:636954-637319 1.0000 100 chrVII:1004071-1004418 1.0000 100 chrXV:902962-903372 1.0000 100 chrVII:986698-987789 1.0000 100 chrXIV:415755-415886 1.0000 100 chrXI:163223-163633 1.0000 100 chrVII:738954-739332 1.0000 100 chrXII:366088-366440 1.0000 100 chrIV:568737-569151 1.0000 100 chrXIII:119281-119478 1.0000 100 chrX:745021-745121 1.0000 100 chrXIII:259019-259390 1.0000 100 chrVII:278311-278723 1.0000 100 chrXVI:406213-406533 1.0000 100 chrIX:174927-175207 1.0000 100 chrXI:614938-615057 1.0000 100 chrXII:36653-37050 1.0000 100 chrXVI:822595-823005 1.0000 100 chrIV:520823-521156 1.0000 100 chrVII:254163-254546 1.0000 100 chrXIII:759006-759278 1.0000 100 chrV:443109-443394 1.0000 100 chrVII:317011-317405 1.0000 100 chrXIII:123141-123551 1.0000 100 chrXV:253849-254076 1.0000 100 chrIV:835810-836123 1.0000 100 chrIV:1150707-1151078 1.0000 100 chrIV:579952-580192 1.0000 100 chrXVI:405040-405802 1.0000 100 chrXVI:678783-679432 1.0000 100 chrXI:108781-109047 1.0000 100 chrXIV:62344-62754 1.0000 100 chrVIII:385447-385857 1.0000 100 chrIX:127842-127947 1.0000 100 chrIX:141758-142260 1.0000 100 chrVII:625193-625560 1.0000 100 chrVII:592368-592949 1.0000 100 chrXII:645922-646283 1.0000 100 chrXI:158261-158566 1.0000 100 chrX:204553-204653 1.0000 100 chrIX:388150-389108 1.0000 100 chrXV:391387-392047 1.0000 100 chrXI:322394-323109 1.0000 100 chrII:45034-45324 1.0000 100 chrXVI:98620-99030 1.0000 100 chrX:121883-121983 1.0000 100 chrXIV:759206-759815 1.0000 100 chrXVI:828925-829452 1.0000 100 chrX:378210-378310 1.0000 100 chrXII:931448-931858 1.0000 100 chrII:142029-142439 1.0000 100 chrVI:65018-65308 1.0000 100 chrXIII:282840-283107 1.0000 100 chrXII:92385-92763 1.0000 100 chrXVI:520190-520520 1.0000 100 chrVII:766051-766550 1.0000 100 chrVIII:452503-452980 1.0000 100 chrIII:178340-178664 1.0000 100 chrVII:609287-610135 1.0000 100 chrXV:892213-892623 1.0000 100 chrXV:571827-572111 1.0000 100 chrXIV:374718-375086 1.0000 100 chrXV:92951-93289 1.0000 100 chrVII:788366-788699 1.0000 100 chrXV:506323-506733 1.0000 100 chrXII:838678-838931 1.0000 100 chrXV:966560-966970 1.0000 100 chrX:541403-541503 1.0000 100 chrVI:84031-84273 1.0000 100 chrXII:258115-258525 1.0000 100 chrVII:541701-542070 1.0000 100 chrXI:517808-518133 1.0000 100 chrVII:765106-765516 1.0000 100 chrXIV:25304-25714 1.0000 100 chrXII:1028274-1028547 1.0000 100 chrXIII:372332-372601 1.0000 100 chrIV:884217-884588 1.0000 100 chrII:554732-554934 1.0000 100 chrX:542829-542929 1.0000 100 chrXV:110810-111154 1.0000 100 chrVII:960285-960471 1.0000 100 chrXV:282007-282330 1.0000 100 chrXI:143115-143401 1.0000 100 chrXVI:40166-40628 1.0000 100 chrII:555791-556136 1.0000 100 chrXIII:163822-164232 1.0000 100 chrIX:325708-326074 1.0000 100 chrV:354760-355238 1.0000 100 chrIV:437636-437965 1.0000 100 chrXII:721987-722397 1.0000 100 chrV:117981-118261 1.0000 100 chrVI:98896-99098 1.0000 100 chrXV:903870-904705 1.0000 100 chrVII:534821-535177 1.0000 100 chrII:306915-307325 1.0000 100 chrXII:1002248-1002720 1.0000 100 chrX:355209-355309 1.0000 100 chrV:378310-378710 1.0000 100 chrXVI:699971-700346 1.0000 100 chrVIII:16891-18361 1.0000 100 chrXIII:286777-287187 1.0000 100 chrXI:618839-619169 1.0000 100 chrII:135936-136356 1.0000 100 chrV:301648-302058 1.0000 100 chrXV:228158-228537 1.0000 100 chrI:34001-34411 1.0000 100 chrIX:394505-395263 1.0000 100 chrIV:914306-914716 1.0000 100 chrXIV:577124-577534 1.0000 100 chrIV:1489085-1489577 1.0000 100 chrII:332362-332698 1.0000 100 chrVII:807250-807660 1.0000 100 chrXI:259624-259976 1.0000 100 chrVII:930873-931170 1.0000 100 chrXVI:819354-819704 1.0000 100 chrVIII:126931-127341 1.0000 100 chrXIII:756352-756639 1.0000 100 chrX:422784-422884 1.0000 100 chrXII:922131-922515 1.0000 100 chrI:143312-143495 1.0000 100 chrVII:205362-206068 1.0000 100 chrII:169404-169814 1.0000 100 chrV:266139-266476 1.0000 100 chrXI:230867-231713 1.0000 100 chrXV:87977-88387 1.0000 100 chrVII:412160-412526 1.0000 100 chrXII:949485-949891 1.0000 100 chrXII:199018-199748 1.0000 100 chrXV:234413-234721 1.0000 100 chrXIV:739244-739717 1.0000 100 chrXIV:88966-89750 1.0000 100 chrXIV:659652-660062 1.0000 100 chrII:140539-140654 1.0000 100 chrIV:217230-217474 1.0000 100 chrXVI:689408-689824 1.0000 100 chrII:681015-681718 1.0000 100 chrV:221440-221868 1.0000 100 chrIV:234418-234828 1.0000 100 chrXV:409408-409818 1.0000 100 chrXII:819343-819753 1.0000 100 chrXV:274498-274906 1.0000 100 chrII:256879-257042 1.0000 100 chrIV:1359439-1359777 1.0000 100 chrVII:401011-401421 1.0000 100 chrIV:392488-392898 1.0000 100 chrX:607885-607985 1.0000 100 chrIX:68838-69248 1.0000 100 chrVIII:50506-50929 1.0000 100 chrXI:551830-552240 1.0000 100 chrXIV:663701-664111 1.0000 100 chrXIV:63142-63475 1.0000 100 chrIII:142027-142277 1.0000 100 chrV:140946-141515 1.0000 100 chrIV:1352285-1352672 1.0000 100 chrVII:824649-825059 1.0000 100 chrIV:1273801-1274211 1.0000 100 chrIX:336265-336570 1.0000 100 chrXI:109893-110034 1.0000 100 chrII:167021-167431 1.0000 100 chrII:592263-592673 1.0000 100 chrXV:976344-976609 1.0000 100 chrII:165015-165948 1.0000 100 chrX:354097-354197 1.0000 100 chrVII:365277-365580 1.0000 100 chrXIII:556953-557263 1.0000 100 chrII:697570-697832 1.0000 100 chrXII:253186-253550 1.0000 100 chrX:531660-531760 1.0000 100 chrXVI:425267-425641 1.0000 100 chrVII:323391-324228 1.0000 100 chrXI:74438-74811 1.0000 100 chrXIV:585616-586550 1.0000 100 chrXIV:771793-772516 1.0000 100 chrXIII:287453-287795 1.0000 100 chrXIII:408220-408839 1.0000 100 chrXV:966822-967232 1.0000 100 chrXIII:91141-91357 1.0000 100 chrXVI:377075-377485 1.0000 100 chrXII:639687-640097 1.0000 100 chrXV:980572-980882 1.0000 100 chrIV:1080460-1080959 1.0000 100 chrXV:678033-678443 1.0000 100 chrXIII:168656-169057 1.0000 100 chrVII:481169-481597 1.0000 100 chrIV:358182-358391 1.0000 100 chrXIII:226135-226545 1.0000 100 chrVII:599960-600370 1.0000 100 chrIV:1300964-1301288 1.0000 100 chrXII:448365-448877 1.0000 100 chrXV:1027912-1028170 1.0000 100 chrXI:383619-384029 1.0000 100 chrV:469309-469619 1.0000 100 chrV:424780-425275 1.0000 100 chrIV:488528-489069 1.0000 100 chrVII:439686-439892 1.0000 100 chrXI:162287-162707 1.0000 100 chrX:124889-124989 1.0000 100 chrXI:44850-45260 1.0000 100 chrIV:541208-541934 1.0000 100 chrXIV:764017-764301 1.0000 100 chrVI:131243-131654 1.0000 100 chrXIII:540243-540978 1.0000 100 chrII:625457-625718 1.0000 100 chrXII:605186-605586 1.0000 100 chrXI:364495-365277 1.0000 100 chrXII:638818-639009 1.0000 100 chrIV:1087015-1087360 1.0000 100 chrXIV:776655-777186 1.0000 100 chrXII:202208-202421 1.0000 100 chrX:121182-121282 1.0000 100 chrXV:342904-343314 1.0000 100 chrX:293867-293967 1.0000 100 chrXV:968051-968427 1.0000 100 chrVII:115333-115677 1.0000 100 chrV:242852-242993 1.0000 100 chrX:348772-348872 1.0000 100 chrX:76031-76131 1.0000 100 chrXIV:24229-24639 1.0000 100 chrIX:138120-139259 1.0000 100 chrXVI:591092-591454 1.0000 100 chrXV:29094-29504 1.0000 100 chrV:269402-269505 1.0000 100 chrVII:727523-727933 1.0000 100 chrXII:369293-370382 1.0000 100 chrVII:401452-401622 1.0000 100 chrXII:258951-259361 1.0000 100 chrII:595024-595279 1.0000 100 chrXV:312613-312830 1.0000 100 chrIII:177361-177602 1.0000 100 chrIV:44193-44603 1.0000 100 chrVII:856741-857034 1.0000 100 chrIV:1175708-1176033 1.0000 100 chrIV:1362277-1362666 1.0000 100 chrVI:162080-162380 1.0000 100 chrV:492217-492608 1.0000 100 chrXII:710568-710926 1.0000 100 chrX:414814-414914 1.0000 100 chrI:68324-68614 1.0000 100 chrVII:398757-399167 1.0000 100 chrII:393184-393594 1.0000 100 chrXV:28338-28748 1.0000 100 chrVII:110486-110817 1.0000 100 chrXV:758979-759515 1.0000 100 chrIV:1492166-1492313 1.0000 100 chrXV:444707-445400 1.0000 100 chrI:142912-143207 1.0000 100 chrXII:424042-424492 1.0000 100 chrII:642904-643244 1.0000 100 chrXI:578789-579204 1.0000 100 chrIV:130587-130933 1.0000 100 chrVIII:175054-175557 1.0000 100 chrXI:381841-382121 1.0000 100 chrII:167240-167650 1.0000 100 chrVIII:35208-35892 1.0000 100 chrXIII:661576-661986 1.0000 100 chrXII:459528-460120 1.0000 100 chrXI:7775-8244 1.0000 100 chrVIII:121363-121576 1.0000 100 chrII:624894-625192 1.0000 100 chrIX:427057-427892 1.0000 100 chrXI:141810-142220 1.0000 100 chrIV:580115-580401 1.0000 100 chrXVI:731952-732275 1.0000 100 chrXIV:494551-494961 1.0000 100 chrXV:912112-912522 1.0000 100 chrII:394991-395401 1.0000 100 chrXIV:62140-62550 1.0000 100 chrIX:332643-333281 1.0000 100 chrVIII:103950-104202 1.0000 100 chrII:373157-373434 1.0000 100 chrX:415840-415940 1.0000 100 chrVIII:105172-105582 1.0000 100 chrXII:234613-234920 1.0000 100 chrXII:242978-243388 1.0000 100 chrXI:68750-69160 1.0000 100 chrII:378858-379146 1.0000 100 chrII:256642-256803 1.0000 100 chrXIII:732063-732382 1.0000 100 chrXV:778896-779306 1.0000 100 chrXII:370411-371169 1.0000 100 chrI:69989-70198 1.0000 100 chrXV:638874-639458 1.0000 100 chrI:72552-72748 1.0000 100 chrXII:201925-202124 1.0000 100 chrV:176940-177382 1.0000 100 chrXII:368122-368532 1.0000 100 chrVII:185606-185922 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SOK2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SOK2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SOK2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 575 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 57500 N= 575 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.292 C 0.208 G 0.208 T 0.292 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SOK2/background): A 0.304 C 0.196 G 0.196 T 0.304 ******************************************************************************** ******************************************************************************** MOTIF TGGYYYAGTKGKTARAGCS MEME-1 width = 19 sites = 81 llr = 1170 E-value = 1.1e-174 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGYYYAGTKGKTARAGCS MEME-1 Description -------------------------------------------------------------------------------- Simplified A :3:::1a2::::27462:: pos.-specific C :::653:::2::1::2:64 probability G :7a:21:8:5a5::52725 matrix T a::434::a3:57311121 bits 2.4 * * 2.1 * * 1.9 * * 1.6 * * *** * Relative 1.4 * * *** * Entropy 1.2 **** *** * (20.8 bits) 0.9 **** *** ** * * 0.7 ***** *** ** * *** 0.5 ***** ************* 0.2 ******************* 0.0 ------------------- Multilevel TGGCCTAGTGGGTAGAGCG consensus A TTC T T TA GC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYYYAGTKGKTARAGCS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------- chrI:166136-166457 + 28 5.17e-10 GTTGGGCACA TGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrXI:517808-518133 + 75 9.59e-10 TATGGGCGTG TGGCGTAGTCGGTAGCGCG CTCCCTT chrXII:656823-657144 - 48 9.59e-10 ATTGGGCGTG TGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrVIII:146102-146442 - 67 9.59e-10 TCAGGGCGTG TGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrX:197217-197317 - 61 9.59e-10 TTAGGGCGTG TGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXVI:856744-857112 + 31 9.59e-10 TTCGGGCGTG TGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXV:274498-274906 + 28 1.16e-09 CGTGTCCCAG TGGCCGAGTGGTTAAGGCG ATGCCCTGCT chrXVI:689408-689824 + 6 1.16e-09 CACTA TGGCCGAGTGGTTAAGGCG ACAGACTTGA chrIV:437636-437965 + 29 1.16e-09 TAAGGCAACT TGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:1150707-1151078 - 74 1.16e-09 AGTCCCAG TGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrXIII:259019-259390 - 60 1.16e-09 TATGGCAACT TGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:1305492-1305821 + 31 1.16e-09 TAAGGCAACT TGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:980817-981182 - 81 1.16e-09 T TGGCCGAGTGGTTAAGGCG AAAGATTAGA chrII:226934-227284 + 23 1.16e-09 CGAGGCAACT TGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXI:578789-579204 + 26 1.70e-09 TCATCCTTGT TAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrVII:115333-115677 + 40 1.70e-09 TCATCCTTGT TAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrIV:359411-359782 + 38 1.70e-09 TCATCCTTGT TAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXVI:819354-819704 + 57 2.92e-09 AATGGTCTCT TGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrV:443109-443394 - 49 2.92e-09 TTTGGTCTCT TGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrVII:738954-739332 + 36 2.92e-09 ATAGGTCTCT TGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXIV:569788-569981 - 81 2.92e-09 T TGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIX:183361-183672 - 22 2.92e-09 CCTGGTCTCT TGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIX:174927-175207 + 21 4.86e-09 CGAGCTTCTA TGGCCAAGTTGGTAAGGCG CCACACTAGT chrXV:113653-113956 + 55 4.86e-09 TTAGCTTCTA TGGCCAAGTTGGTAAGGCG CCACACTAGT chrXV:353934-354267 - 38 4.86e-09 ACTGCTTCTA TGGCCAAGTTGGTAAGGCG CCACACTAGT chrXII:731971-732272 + 26 6.69e-09 AATGGGAGTT TGGCCGAGTGGTTTAAGGC GTCAGATTTA chrX:617762-617862 + 39 6.69e-09 AATGGGAGTT TGGCCGAGTGGTTTAAGGC GTCAGATTTA chrVII:185606-185922 - 47 1.42e-08 ATAGCCTTGT TGGCGCAATCGGTAGCGCG TATGACTCTT chrX:414814-414914 + 53 1.42e-08 TTAGCCTTGT TGGCGCAATCGGTAGCGCG TATGACTCTT chrXVI:581889-582265 + 42 1.42e-08 AGAGCCTTGT TGGCGCAATCGGTAGCGCG TATGACTCTT chrV:135289-135639 - 58 1.42e-08 AAAGCCTTGT TGGCGCAATCGGTAGCGCG TATGACTCTT chrIV:1201585-1201930 + 50 1.42e-08 ATAGCCTTGT TGGCGCAATCGGTAGCGCG TATGACTCTT chrXI:74438-74811 + 57 2.17e-08 TTAGACTCCA TGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXV:228158-228537 + 41 2.17e-08 TTAGACTCCA TGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXVI:810569-810839 + 29 2.17e-08 TGCGACTCCA TGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXIV:102557-102963 + 13 2.17e-08 TAAGACTCCA TGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXII:605186-605586 - 71 2.48e-08 AATGCTCGTG TAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrIV:884217-884588 + 16 2.48e-08 AATGCTCGTG TAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrXIV:374718-375086 + 24 3.67e-08 TAAGCGGACT TAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVI:157841-158167 - 28 3.67e-08 GAAGCGGATT TAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXVI:560053-560440 - 68 3.67e-08 TGAGCGGATT TAGCTCAGTTGGGAGAGCG CCAGACTGAA chrIV:1095236-1095610 - 63 3.67e-08 TTAGCGGACT TAGCTCAGTTGGGAGAGCG CCAGACTGAA chrIV:519610-519898 + 46 4.72e-08 TACGGAGGGT TGGCCGAGTGGTCTAAGGC GGCAGACTTA chrIV:1175708-1176033 + 16 1.32e-07 AAAGCTTCAG TAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrXV:976344-976609 + 2 1.32e-07 G TAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrX:422784-422884 + 46 1.32e-07 TATGCTTCAG TAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrVI:162080-162380 + 55 1.98e-07 CAAGCGCAAG TGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:930873-931170 - 27 1.98e-07 TAAGCGCAAG TGGTTTAGTGGTAAAATCC AACGTTGCCA chrXV:282007-282330 + 53 1.98e-07 AGCGCGCAAG TGGTTTAGTGGTAAAATCC AACGTTGCCA chrXVI:860227-860561 + 42 1.98e-07 CAAGCGCAAG TGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:845487-845816 + 55 1.98e-07 CAAGCGCAAG TGGTTTAGTGGTAAAATCC AACGTTGCCA chrIII:142621-142917 - 27 1.98e-07 CTAGCGCAAG TGGTTTAGTGGTAAAATCC AACGTTGCCA chrIV:992692-993005 + 41 1.98e-07 TGAGCGCAAG TGGTTTAGTGGTAAAATCC AACGTTGCCA chrV:469309-469619 + 50 2.40e-07 ATTGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:412160-412526 - 49 2.40e-07 ACTGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:372332-372601 - 77 2.40e-07 TTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrX:378210-378310 + 48 2.40e-07 ATAGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:823323-823670 + 43 2.40e-07 AGTGGTTTCG TGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXII:92385-92763 + 31 4.51e-07 TAAGGGCGTG TGGTCTAGTGGTATGATTC TCGCTTTGGG chrVI:101212-101563 + 46 4.51e-07 TTCGGGCGTG TGGTCTAGTGGTATGATTC TCGCTTTGGG chrXIV:568030-568236 + 39 4.51e-07 ATCGGGCGTG TGGTCTAGTGGTATGATTC TCGCTTTGGG chrV:492217-492608 - 37 4.91e-07 CTATTCCTCG TGGCCCAATGGTCACGGCG TCTGGCTACG chrIV:619838-620188 - 53 4.91e-07 TTGTTCCTCG TGGCCCAATGGTCACGGCG TCTGGCTACG chrIV:1256911-1257257 - 20 5.33e-07 TTAGCGAAAG TGGTTCAGTGGTTAGAATT CATGCTTCCC chrXV:594261-594575 - 32 5.33e-07 AACGCGCAAG TGGTTCAGTGGTTAGAATT TATGCTTCCC chrX:354097-354197 + 31 1.14e-06 TCACTCTCGG TAGCCAAGTTGGTTTAAGG CGCAAGACTG chrX:542829-542929 - 53 1.14e-06 ATACTCTCGG TAGCCAAGTTGGTTTAAGG CGCAAGACTG chrXV:288046-288410 + 21 1.14e-06 CTTCTCTCGG TAGCCAAGTTGGTTTAAGG CGCAAGACTG chrXII:818492-818805 + 18 1.69e-06 TATGCTCCTC TAGTGCAATGGTTAGCATG CATTCTTCCG chrXIII:759325-759524 - 23 1.92e-06 TGCCGCTACT TGGCGAAGATGGTTGAGCT GGGCGGTTCG chrXV:110810-111154 - 76 2.56e-06 GGCGGT TAGTGTAGTGGTTATCATC CCACCCTTCC chrXIV:96119-96480 - 38 2.56e-06 CATGGGCGGT TAGTGTAGTGGTTATCATC CCACCCTTCC chrIV:520823-521156 + 40 3.02e-06 TAGGGTCCTA TAGTGTAGTGGTTATCACT TTCGGTTTTG chrV:131002-131305 - 25 3.02e-06 AGAGGTTTTA TAGTGTAGTGGTTATCACT TTCGGTTTTG chrIX:336265-336570 - 28 3.19e-06 AAATCCGTGA TAGTTTAATGGTCAGAATG GGCGCTTGTC chrX:541403-541503 + 36 3.19e-06 AAATCCGTGA TAGTTTAATGGTCAGAATG GGCGCTTGTC chrXV:571827-572111 + 46 3.19e-06 AAATCCGTGA TAGTTTAATGGTCAGAATG GGCGCTTGTC chrIV:568737-569151 + 77 3.19e-06 TCTTCCGTGA TAGTTTAATGGTCAGAATG GGCGC chrVII:544433-544825 - 44 3.19e-06 TCTTCCGTGA TAGTTTAATGGTCAGAATG GGCGCTTGTC chrXV:980572-980882 + 13 4.10e-06 TATGGGCGTG TGGTCTAGTGGAATGATTC TCGCTTTGGG chrXIV:631750-632072 - 31 4.30e-06 ACCGGGCGTG TGGTCTAGAGGTATGATTC TCGCTTAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYYYAGTKGKTARAGCS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:166136-166457 5.2e-10 27_[+1]_54 chrXI:517808-518133 9.6e-10 74_[+1]_7 chrXII:656823-657144 9.6e-10 47_[-1]_34 chrVIII:146102-146442 9.6e-10 66_[-1]_15 chrX:197217-197317 9.6e-10 60_[-1]_21 chrXVI:856744-857112 9.6e-10 30_[+1]_51 chrXV:274498-274906 1.2e-09 27_[+1]_54 chrXVI:689408-689824 1.2e-09 5_[+1]_76 chrIV:437636-437965 1.2e-09 28_[+1]_53 chrIV:1150707-1151078 1.2e-09 73_[-1]_8 chrXIII:259019-259390 1.2e-09 59_[-1]_22 chrIV:1305492-1305821 1.2e-09 30_[+1]_51 chrIV:980817-981182 1.2e-09 80_[-1]_1 chrII:226934-227284 1.2e-09 22_[+1]_59 chrXI:578789-579204 1.7e-09 25_[+1]_56 chrVII:115333-115677 1.7e-09 39_[+1]_42 chrIV:359411-359782 1.7e-09 37_[+1]_44 chrXVI:819354-819704 2.9e-09 56_[+1]_25 chrV:443109-443394 2.9e-09 48_[-1]_33 chrVII:738954-739332 2.9e-09 35_[+1]_46 chrXIV:569788-569981 2.9e-09 80_[-1]_1 chrIX:183361-183672 2.9e-09 21_[-1]_60 chrIX:174927-175207 4.9e-09 20_[+1]_61 chrXV:113653-113956 4.9e-09 54_[+1]_27 chrXV:353934-354267 4.9e-09 37_[-1]_44 chrXII:731971-732272 6.7e-09 25_[+1]_56 chrX:617762-617862 6.7e-09 38_[+1]_43 chrVII:185606-185922 1.4e-08 46_[-1]_35 chrX:414814-414914 1.4e-08 52_[+1]_29 chrXVI:581889-582265 1.4e-08 41_[+1]_40 chrV:135289-135639 1.4e-08 57_[-1]_24 chrIV:1201585-1201930 1.4e-08 49_[+1]_32 chrXI:74438-74811 2.2e-08 56_[+1]_25 chrXV:228158-228537 2.2e-08 40_[+1]_41 chrXVI:810569-810839 2.2e-08 28_[+1]_53 chrXIV:102557-102963 2.2e-08 12_[+1]_69 chrXII:605186-605586 2.5e-08 70_[-1]_11 chrIV:884217-884588 2.5e-08 15_[+1]_66 chrXIV:374718-375086 3.7e-08 23_[+1]_58 chrVI:157841-158167 3.7e-08 27_[-1]_54 chrXVI:560053-560440 3.7e-08 67_[-1]_14 chrIV:1095236-1095610 3.7e-08 62_[-1]_19 chrIV:519610-519898 4.7e-08 45_[+1]_36 chrIV:1175708-1176033 1.3e-07 15_[+1]_66 chrXV:976344-976609 1.3e-07 1_[+1]_80 chrX:422784-422884 1.3e-07 45_[+1]_36 chrVI:162080-162380 2e-07 54_[+1]_27 chrVII:930873-931170 2e-07 26_[-1]_55 chrXV:282007-282330 2e-07 52_[+1]_29 chrXVI:860227-860561 2e-07 41_[+1]_40 chrVII:845487-845816 2e-07 54_[+1]_27 chrIII:142621-142917 2e-07 26_[-1]_55 chrIV:992692-993005 2e-07 40_[+1]_41 chrV:469309-469619 2.4e-07 49_[+1]_32 chrVII:412160-412526 2.4e-07 48_[-1]_33 chrXIII:372332-372601 2.4e-07 76_[-1]_5 chrX:378210-378310 2.4e-07 47_[+1]_34 chrVII:823323-823670 2.4e-07 42_[+1]_39 chrXII:92385-92763 4.5e-07 30_[+1]_51 chrVI:101212-101563 4.5e-07 45_[+1]_36 chrXIV:568030-568236 4.5e-07 38_[+1]_43 chrV:492217-492608 4.9e-07 36_[-1]_45 chrIV:619838-620188 4.9e-07 52_[-1]_29 chrIV:1256911-1257257 5.3e-07 19_[-1]_62 chrXV:594261-594575 5.3e-07 31_[-1]_50 chrX:354097-354197 1.1e-06 30_[+1]_51 chrX:542829-542929 1.1e-06 52_[-1]_29 chrXV:288046-288410 1.1e-06 20_[+1]_61 chrXII:818492-818805 1.7e-06 17_[+1]_64 chrXIII:759325-759524 1.9e-06 22_[-1]_59 chrXV:110810-111154 2.6e-06 75_[-1]_6 chrXIV:96119-96480 2.6e-06 37_[-1]_44 chrIV:520823-521156 3e-06 39_[+1]_42 chrV:131002-131305 3e-06 24_[-1]_57 chrIX:336265-336570 3.2e-06 27_[-1]_54 chrX:541403-541503 3.2e-06 35_[+1]_46 chrXV:571827-572111 3.2e-06 45_[+1]_36 chrIV:568737-569151 3.2e-06 76_[+1]_5 chrVII:544433-544825 3.2e-06 43_[-1]_38 chrXV:980572-980882 4.1e-06 12_[+1]_69 chrXIV:631750-632072 4.3e-06 30_[-1]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYYYAGTKGKTARAGCS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGYYYAGTKGKTARAGCS width=19 seqs=81 chrI:166136-166457 ( 28) TGGCGCAGTTGGTAGCGCG 1 chrXI:517808-518133 ( 75) TGGCGTAGTCGGTAGCGCG 1 chrXII:656823-657144 ( 48) TGGCGTAGTCGGTAGCGCG 1 chrVIII:146102-146442 ( 67) TGGCGTAGTCGGTAGCGCG 1 chrX:197217-197317 ( 61) TGGCGTAGTCGGTAGCGCG 1 chrXVI:856744-857112 ( 31) TGGCGTAGTCGGTAGCGCG 1 chrXV:274498-274906 ( 28) TGGCCGAGTGGTTAAGGCG 1 chrXVI:689408-689824 ( 6) TGGCCGAGTGGTTAAGGCG 1 chrIV:437636-437965 ( 29) TGGCCGAGTGGTTAAGGCG 1 chrIV:1150707-1151078 ( 74) TGGCCGAGTGGTTAAGGCG 1 chrXIII:259019-259390 ( 60) TGGCCGAGTGGTTAAGGCG 1 chrIV:1305492-1305821 ( 31) TGGCCGAGTGGTTAAGGCG 1 chrIV:980817-981182 ( 81) TGGCCGAGTGGTTAAGGCG 1 chrII:226934-227284 ( 23) TGGCCGAGTGGTTAAGGCG 1 chrXI:578789-579204 ( 26) TAGCTCAGTTGGTAGAGCG 1 chrVII:115333-115677 ( 40) TAGCTCAGTTGGTAGAGCG 1 chrIV:359411-359782 ( 38) TAGCTCAGTTGGTAGAGCG 1 chrXVI:819354-819704 ( 57) TGGCCCAGTTGGTTAAGGC 1 chrV:443109-443394 ( 49) TGGCCCAGTTGGTTAAGGC 1 chrVII:738954-739332 ( 36) TGGCCCAGTTGGTTAAGGC 1 chrXIV:569788-569981 ( 81) TGGCCCAGTTGGTTAAGGC 1 chrIX:183361-183672 ( 22) TGGCCCAGTTGGTTAAGGC 1 chrIX:174927-175207 ( 21) TGGCCAAGTTGGTAAGGCG 1 chrXV:113653-113956 ( 55) TGGCCAAGTTGGTAAGGCG 1 chrXV:353934-354267 ( 38) TGGCCAAGTTGGTAAGGCG 1 chrXII:731971-732272 ( 26) TGGCCGAGTGGTTTAAGGC 1 chrX:617762-617862 ( 39) TGGCCGAGTGGTTTAAGGC 1 chrVII:185606-185922 ( 47) TGGCGCAATCGGTAGCGCG 1 chrX:414814-414914 ( 53) TGGCGCAATCGGTAGCGCG 1 chrXVI:581889-582265 ( 42) TGGCGCAATCGGTAGCGCG 1 chrV:135289-135639 ( 58) TGGCGCAATCGGTAGCGCG 1 chrIV:1201585-1201930 ( 50) TGGCGCAATCGGTAGCGCG 1 chrXI:74438-74811 ( 57) TGGCCAAGTTGGTTAAGGC 1 chrXV:228158-228537 ( 41) TGGCCAAGTTGGTTAAGGC 1 chrXVI:810569-810839 ( 29) TGGCCAAGTTGGTTAAGGC 1 chrXIV:102557-102963 ( 13) TGGCCAAGTTGGTTAAGGC 1 chrXII:605186-605586 ( 71) TAGCTCAGTGGTTAGAGCT 1 chrIV:884217-884588 ( 16) TAGCTCAGTGGTTAGAGCT 1 chrXIV:374718-375086 ( 24) TAGCTCAGTTGGGAGAGCG 1 chrVI:157841-158167 ( 28) TAGCTCAGTTGGGAGAGCG 1 chrXVI:560053-560440 ( 68) TAGCTCAGTTGGGAGAGCG 1 chrIV:1095236-1095610 ( 63) TAGCTCAGTTGGGAGAGCG 1 chrIV:519610-519898 ( 46) TGGCCGAGTGGTCTAAGGC 1 chrIV:1175708-1176033 ( 16) TAGCTCAGTAGGAAGAGCG 1 chrXV:976344-976609 ( 2) TAGCTCAGTAGGAAGAGCG 1 chrX:422784-422884 ( 46) TAGCTCAGTAGGAAGAGCG 1 chrVI:162080-162380 ( 55) TGGTTTAGTGGTAAAATCC 1 chrVII:930873-931170 ( 27) TGGTTTAGTGGTAAAATCC 1 chrXV:282007-282330 ( 53) TGGTTTAGTGGTAAAATCC 1 chrXVI:860227-860561 ( 42) TGGTTTAGTGGTAAAATCC 1 chrVII:845487-845816 ( 55) TGGTTTAGTGGTAAAATCC 1 chrIII:142621-142917 ( 27) TGGTTTAGTGGTAAAATCC 1 chrIV:992692-993005 ( 41) TGGTTTAGTGGTAAAATCC 1 chrV:469309-469619 ( 50) TGGTCTAGTCGGTTATGGC 1 chrVII:412160-412526 ( 49) TGGTCTAGTCGGTTATGGC 1 chrXIII:372332-372601 ( 77) TGGTCTAGTCGGTTATGGC 1 chrX:378210-378310 ( 48) TGGTCTAGTCGGTTATGGC 1 chrVII:823323-823670 ( 43) TGGTCTAGTCGGTTATGGC 1 chrXII:92385-92763 ( 31) TGGTCTAGTGGTATGATTC 1 chrVI:101212-101563 ( 46) TGGTCTAGTGGTATGATTC 1 chrXIV:568030-568236 ( 39) TGGTCTAGTGGTATGATTC 1 chrV:492217-492608 ( 37) TGGCCCAATGGTCACGGCG 1 chrIV:619838-620188 ( 53) TGGCCCAATGGTCACGGCG 1 chrIV:1256911-1257257 ( 20) TGGTTCAGTGGTTAGAATT 1 chrXV:594261-594575 ( 32) TGGTTCAGTGGTTAGAATT 1 chrX:354097-354197 ( 31) TAGCCAAGTTGGTTTAAGG 1 chrX:542829-542929 ( 53) TAGCCAAGTTGGTTTAAGG 1 chrXV:288046-288410 ( 21) TAGCCAAGTTGGTTTAAGG 1 chrXII:818492-818805 ( 18) TAGTGCAATGGTTAGCATG 1 chrXIII:759325-759524 ( 23) TGGCGAAGATGGTTGAGCT 1 chrXV:110810-111154 ( 76) TAGTGTAGTGGTTATCATC 1 chrXIV:96119-96480 ( 38) TAGTGTAGTGGTTATCATC 1 chrIV:520823-521156 ( 40) TAGTGTAGTGGTTATCACT 1 chrV:131002-131305 ( 25) TAGTGTAGTGGTTATCACT 1 chrIX:336265-336570 ( 28) TAGTTTAATGGTCAGAATG 1 chrX:541403-541503 ( 36) TAGTTTAATGGTCAGAATG 1 chrXV:571827-572111 ( 46) TAGTTTAATGGTCAGAATG 1 chrIV:568737-569151 ( 77) TAGTTTAATGGTCAGAATG 1 chrVII:544433-544825 ( 44) TAGTTTAATGGTCAGAATG 1 chrXV:980572-980882 ( 13) TGGTCTAGTGGAATGATTC 1 chrXIV:631750-632072 ( 31) TGGTCTAGAGGTATGATTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYYYAGTKGKTARAGCS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 47150 bayes= 10.1383 E= 1.1e-174 -1298 -1298 -1298 172 2 -1298 182 -1298 -1298 -1298 235 -1298 -1298 171 -1298 24 -1298 126 10 8 -116 82 -53 33 172 -1298 -1298 -1298 -92 -1298 210 -1298 -362 -1298 -1298 168 -304 -8 130 -4 -1298 -1298 235 -1298 -462 -1298 140 63 -71 -99 -199 113 116 -1298 -1298 8 51 -299 122 -181 93 1 -29 -230 -71 -1298 177 -104 -1298 153 33 -71 -1298 97 144 -181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYYYAGTKGKTARAGCS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 81 E= 1.1e-174 0.000000 0.000000 0.000000 1.000000 0.308642 0.000000 0.691358 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.641975 0.000000 0.358025 0.000000 0.469136 0.209877 0.320988 0.135802 0.345679 0.135802 0.382716 1.000000 0.000000 0.000000 0.000000 0.160494 0.000000 0.839506 0.000000 0.024691 0.000000 0.000000 0.975309 0.037037 0.185185 0.481481 0.296296 0.000000 0.000000 1.000000 0.000000 0.012346 0.000000 0.518519 0.469136 0.185185 0.098765 0.049383 0.666667 0.679012 0.000000 0.000000 0.320988 0.432099 0.024691 0.456790 0.086420 0.580247 0.197531 0.160494 0.061728 0.185185 0.000000 0.666667 0.148148 0.000000 0.567901 0.246914 0.185185 0.000000 0.382716 0.530864 0.086420 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYYYAGTKGKTARAGCS MEME-1 regular expression -------------------------------------------------------------------------------- T[GA]G[CT][CTG][TC]AGT[GT]G[GT]T[AT][GA]AG[CG][GC] -------------------------------------------------------------------------------- Time 324.94 secs. ******************************************************************************** ******************************************************************************** MOTIF TWKTAAYCDKRAGRTCVBSGGTTCGABYCC MEME-2 width = 30 sites = 67 llr = 1206 E-value = 1.3e-210 ******************************************************************************** -------------------------------------------------------------------------------- Motif TWKTAAYCDKRAGRTCVBSGGTTCGABYCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 132166::2136232:3:12::::2a2::: pos.-specific C 1213213611:22118443::::a::34a7 probability G ::4122133453651:3357a:::8:2::: matrix T 7535:151341:::62131::aa:::46:2 bits 2.4 * * * 2.1 * * * 1.9 * * * 1.6 * ** * * Relative 1.4 * ****** * Entropy 1.2 * ****** * (26.0 bits) 0.9 * * ******* *** 0.7 * * *** * ******* *** 0.5 * **** **** * ********* *** 0.2 ******** ***************** *** 0.0 ------------------------------ Multilevel TTGTAATCGGGAGGTCCCGGGTTCGATTCC consensus ATCC CGTTAG AATGGC A CC T sequence A AT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWKTAAYCDKRAGRTCVBSGGTTCGABYCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrV:176940-177382 + 19 7.72e-12 TCACATCACG CTTTCACCGTGGAGACCGGGGTTCGACTCC CCGTATCGGA chrVII:401452-401622 - 51 7.72e-12 TCACATCACG CTTTCACCGTGGAGACCGGGGTTCGACTCC CCGTATCGGA chrV:354760-355238 + 16 7.72e-12 TCACATCACG CTTTCACCGTGGAGACCGGGGTTCGACTCC CCGTATCGGA chrVII:541701-542070 + 46 7.72e-12 TCACATCACG CTTTCACCGTGGAGACCGGGGTTCGACTCC CCGTATCGGA chrXIII:290652-290987 + 63 7.72e-12 TCACATCACG CTTTCACCGTGGAGACCGGGGTTCGACTCC CCGTATCG chrVII:328432-328870 + 13 7.72e-12 TCACATCACG CTTTCACCGTGGAGACCGGGGTTCGACTCC CCGTATCGGA chrXVI:860227-860561 + 65 1.24e-11 AAATCCAACG TTGCCATCGTTGGGCCCCCGGTTCGATTCC GGGCTT chrXVI:572137-572546 + 8 1.24e-11 TCCAACG TTGCCATCGTTGGGCCCCCGGTTCGATTCC GGGCTTGCGC chrIV:992692-993005 + 64 1.24e-11 AAATCCAACG TTGCCATCGTTGGGCCCCCGGTTCGATTCC GGGCTTG chrVII:185606-185922 - 11 1.70e-11 CGCGTATGAC TCTTAATCATAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrIV:1352285-1352672 - 49 1.70e-11 CGCGTATGAC TCTTAATCATAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrV:443109-443394 - 12 1.70e-11 GGCACCGTGC TAATAACGCGGGGATCAGCGGTTCGATCCC GCTAGAGACC chrVII:738954-739332 + 62 1.70e-11 GGCACCGTGC TAATAACGCGGGGATCAGCGGTTCGATCCC GCTAGAGAC chrXVI:581889-582265 + 67 1.70e-11 CGCGTATGAC TCTTAATCATAAGGTTAGGGGTTCGAGCCC CCTA chrV:135289-135639 - 22 1.70e-11 CGCGTATGAC TCTTAATCATAAGGTTAGGGGTTCGAGCCC CCTACAGGGC chrXIV:569788-569981 - 44 1.70e-11 GGCACCGTGC TAATAACGCGGGGATCAGCGGTTCGATCCC GCTAGAGACC chrI:166136-166457 + 53 1.97e-11 CGCGCTTCCC TTGCAAGGAAGAGGTCATCGGTTCGATTCC GGTTGCGTCC chrIV:520823-521156 + 64 2.66e-11 TCACTTTCGG TTTTGATCCGGACAACCCCGGTTCGAATCC GGGTAGG chrXI:162287-162707 - 51 3.57e-11 CGCGTCTGAC TTCTAATCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrX:355209-355309 + 30 3.57e-11 CGCGTCTGAC TTCTAATCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrIV:568737-569151 + 19 3.57e-11 CGCGTCTGAC TTCTAATCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrII:405712-406134 + 36 3.57e-11 CGCGTCTGAC TTCTAATCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrVII:405406-405681 + 8 3.57e-11 GTCTGAC TTCTAATCAGAAGATTATGGGTTCGACCCC CATCGTGAGT chrIX:174927-175207 + 46 1.24e-10 GGCGCCACAC TAGTAATGTGGAGATCATCGGTTCAAATCC GATTGGAAGC chrXV:353934-354267 - 2 1.24e-10 GGCGCCACAC TAGTAATGTGGAGATCATCGGTTCAAATCC G chrXII:656823-657144 - 12 2.68e-10 CGCGCTCCCT TAGCATGGGAGAGGTCTCCGGTTCGATTCC GGACTCGTCC chrVIII:146102-146442 - 31 2.68e-10 CGCGCTCCCT TAGCATGGGAGAGGTCTCCGGTTCGATTCC GGACTCGTCC chrX:197217-197317 - 25 2.68e-10 CGCGCTCCCT TAGCATGGGAGAGGTCTCCGGTTCGATTCC GGACTCGTCC chrXVI:856744-857112 + 56 2.68e-10 CGCGCTCCCT TAGCATGGGAGAGGTCTCCGGTTCGATTCC GGACTCGTCC chrXV:110810-111154 - 41 1.71e-09 TCATCCCACC CTTCCAAGGTGGGGACACGGGTTCGATTCT CGTACCGCTC chrXIV:96119-96480 - 3 1.71e-09 TCATCCCACC CTTCCAAGGTGGGGACACGGGTTCGATTCT CG chrV:492217-492608 - 1 2.11e-09 GGCGTCTGGC TACGAACCAGAAGATTCCAGGTTCAAGTCC chrIV:619838-620188 - 17 2.11e-09 GGCGTCTGGC TACGAACCAGAAGATTCCAGGTTCAAGTCC TGGCGGGGAA chrXIV:374718-375086 + 67 2.61e-09 AACTTCGGTC AAGTCATCTGGAGGTCCTGTGTTCGATCCA CAGA chrIV:1175708-1176033 + 41 2.89e-09 AGCGTCAGTC TCATAATCTGAAGGTCGAGAGTTCGAACCT CCCCTGGAGC chrXV:976344-976609 + 27 2.89e-09 AGCGTCAGTC TCATAATCTGAAGGTCGAGAGTTCGAACCT CCCCTGGAGC chrX:422784-422884 + 71 2.89e-09 AGCGTCAGTC TCATAATCTGAAGGTCGAGAGTTCGAACCT chrXV:980572-980882 + 70 4.78e-09 AGGAGGAACA AAGCATGCGAGAGGCCCTGGGTTCAATTCC C chrVII:412160-412526 - 12 7.73e-09 GGCATCTGCT TAACACGCAGAACGTCCCCAGTTCGATCCT GGGCGAAATC chrXIII:372332-372601 - 40 7.73e-09 GGCATCTGCT TAACACGCAGAACGTCCCCAGTTCGATCCT GGGCGAAATC chrVII:823323-823670 + 69 7.73e-09 GGCATCTGCT TAACACGCAGAACGTCCCCAGTTCGATCCT GG chrIV:488528-489069 - 60 8.49e-09 GACGTCGCCT TTACACGGCGAAGATCCCGAGTTCGAACCT CGGTTGGATC chrXV:228158-228537 + 67 1.34e-08 GGCGTGCGAC TGTTAATCGCAAGATCGTGAGTTCAACCCT CACT chrXVI:810569-810839 + 55 1.34e-08 GGCGTGCGAC TGTTAATCGCAAGATCGTGAGTTCAACCCT CACTGGGGTC chrXIV:102557-102963 + 39 1.34e-08 GGCGTGCGAC TGTTAATCGCAAGATCGTGAGTTCAACCCT CACTGGGGTC chrX:541403-541503 + 60 1.60e-08 GAATGGGCGC TTGTCGCGTGCCAGATCGGGGTTCAATTCC CCGTCGCGGA chrXV:571827-572111 + 70 1.60e-08 GAATGGGCGC TTGTCGCGTGCCAGATCGGGGTTCAATTCC C chrVII:544433-544825 - 9 1.60e-08 GAATGGGCGC TTGTCGCGTGCCAGATCGGGGTTCAATTCC CCGTCGCG chrXIII:168656-169057 + 37 1.90e-08 ATTTATCACT ACGAAATCTTGAGATCGGGCGTTCGACTCG CCCCCGGGAG chrIV:437636-437965 + 63 1.90e-08 TTAGAAATCT TTTGGGCTTTGCCCGCGCAGGTTCGAGTCC TGCAGTTG chrX:542829-542929 - 1 1.90e-08 ATTTATCACT ACGAAATCTTGAGATCGGGCGTTCGACTCG chrXIII:259019-259390 - 15 1.90e-08 TTAGAAATCT TTTGGGCTTTGCCCGCGCAGGTTCGAGTCC TGCAGTTGTC chrVII:1004071-1004418 + 53 1.90e-08 AGCGTTGCAC TTGTAATGCAAAGGTCGTTAGTTCAATTCT GACAGGTGGC chrXV:288046-288410 + 62 1.90e-08 ATTTATCACT ACGAAATCTTGAGATCGGGCGTTCGACTCG CCCCCGGGA chrIV:980817-981182 - 36 1.90e-08 TTAGAAATCT TTTGGGCTTTGCCCGCGCAGGTTCGAGTCC TGCAGTTGTC chrII:226934-227284 + 57 1.90e-08 TTAGAAATCT TTTGGGCTTTGCCCGCGCAGGTTCGAGTCC TGCAGTTGTC chrVII:110486-110817 - 35 2.07e-08 GTACACATCG TTGTGGCCGATGAAACCCTGGTTCGATTCT AGGAGATGGC chrXI:313302-313620 - 1 2.07e-08 GTACACATCG TTGTGGCCGATGAAACCCTGGTTCGATTCT chrIV:1305492-1305821 + 66 2.26e-08 TAGAAATCTT TTGGGCTTTGGCCCGCGCAGGTTCGAGTCC TGCAG chrXVI:560053-560440 - 13 2.46e-08 AACTTCGGTC AAGTTATCTGGAGGTCCTGTGTTCGATCCA CAGAATTCGC chrXII:818492-818805 + 42 7.45e-08 GCATGCATTC TTCCGGTGGCTGTGATCCGGGTTCGAGTCC CGGGAGGAGC chrIV:1095236-1095610 - 8 1.23e-07 AACTTTGGTC AAGATATCTGGAGGTCCTGTGTTCGATCCA CAGAGTT chrXV:710086-710342 + 68 2.26e-07 CGCGCAGGGC TCATAACCCTGATGTCCTCGGATCGAAACC GAG chrIII:227772-228227 + 53 4.46e-07 TCGGCTATCT CTTGGGCTCTGCCCGCGCTGGTTCAAATCC TGCTGGTGTC chrIV:1150707-1151078 - 11 8.26e-07 GCAATTAGGC ATTGGGTTTTACCTGCGCAGGTTCGAATCC TGTCTGTGAC chrXVI:689408-689824 + 40 1.38e-06 CTTGAAATCT GTTGGGCTCTGCCCGCGCTGGTTCAAATCC TGCTGGTGTC chrVIII:379522-379945 - 49 1.44e-06 ATGGCACATT TACCATTTGAGGGATCTGAAGATCAAGTCC GCCTTAAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWKTAAYCDKRAGRTCVBSGGTTCGABYCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:176940-177382 7.7e-12 18_[+2]_52 chrVII:401452-401622 7.7e-12 50_[-2]_20 chrV:354760-355238 7.7e-12 15_[+2]_55 chrVII:541701-542070 7.7e-12 45_[+2]_25 chrXIII:290652-290987 7.7e-12 62_[+2]_8 chrVII:328432-328870 7.7e-12 12_[+2]_58 chrXVI:860227-860561 1.2e-11 64_[+2]_6 chrXVI:572137-572546 1.2e-11 7_[+2]_63 chrIV:992692-993005 1.2e-11 63_[+2]_7 chrVII:185606-185922 1.7e-11 10_[-2]_60 chrIV:1352285-1352672 1.7e-11 48_[-2]_22 chrV:443109-443394 1.7e-11 11_[-2]_59 chrVII:738954-739332 1.7e-11 61_[+2]_9 chrXVI:581889-582265 1.7e-11 66_[+2]_4 chrV:135289-135639 1.7e-11 21_[-2]_49 chrXIV:569788-569981 1.7e-11 43_[-2]_27 chrI:166136-166457 2e-11 52_[+2]_18 chrIV:520823-521156 2.7e-11 63_[+2]_7 chrXI:162287-162707 3.6e-11 50_[-2]_20 chrX:355209-355309 3.6e-11 29_[+2]_41 chrIV:568737-569151 3.6e-11 18_[+2]_52 chrII:405712-406134 3.6e-11 35_[+2]_35 chrVII:405406-405681 3.6e-11 7_[+2]_63 chrIX:174927-175207 1.2e-10 45_[+2]_25 chrXV:353934-354267 1.2e-10 1_[-2]_69 chrXII:656823-657144 2.7e-10 11_[-2]_59 chrVIII:146102-146442 2.7e-10 30_[-2]_40 chrX:197217-197317 2.7e-10 24_[-2]_46 chrXVI:856744-857112 2.7e-10 55_[+2]_15 chrXV:110810-111154 1.7e-09 40_[-2]_30 chrXIV:96119-96480 1.7e-09 2_[-2]_68 chrV:492217-492608 2.1e-09 [-2]_70 chrIV:619838-620188 2.1e-09 16_[-2]_54 chrXIV:374718-375086 2.6e-09 66_[+2]_4 chrIV:1175708-1176033 2.9e-09 40_[+2]_30 chrXV:976344-976609 2.9e-09 26_[+2]_44 chrX:422784-422884 2.9e-09 70_[+2] chrXV:980572-980882 4.8e-09 69_[+2]_1 chrVII:412160-412526 7.7e-09 11_[-2]_59 chrXIII:372332-372601 7.7e-09 39_[-2]_31 chrVII:823323-823670 7.7e-09 68_[+2]_2 chrIV:488528-489069 8.5e-09 59_[-2]_11 chrXV:228158-228537 1.3e-08 66_[+2]_4 chrXVI:810569-810839 1.3e-08 54_[+2]_16 chrXIV:102557-102963 1.3e-08 38_[+2]_32 chrX:541403-541503 1.6e-08 59_[+2]_11 chrXV:571827-572111 1.6e-08 69_[+2]_1 chrVII:544433-544825 1.6e-08 8_[-2]_62 chrXIII:168656-169057 1.9e-08 36_[+2]_34 chrIV:437636-437965 1.9e-08 62_[+2]_8 chrX:542829-542929 1.9e-08 [-2]_70 chrXIII:259019-259390 1.9e-08 14_[-2]_56 chrVII:1004071-1004418 1.9e-08 52_[+2]_18 chrXV:288046-288410 1.9e-08 61_[+2]_9 chrIV:980817-981182 1.9e-08 35_[-2]_35 chrII:226934-227284 1.9e-08 56_[+2]_14 chrVII:110486-110817 2.1e-08 34_[-2]_36 chrXI:313302-313620 2.1e-08 [-2]_70 chrIV:1305492-1305821 2.3e-08 65_[+2]_5 chrXVI:560053-560440 2.5e-08 12_[-2]_58 chrXII:818492-818805 7.4e-08 41_[+2]_29 chrIV:1095236-1095610 1.2e-07 7_[-2]_63 chrXV:710086-710342 2.3e-07 67_[+2]_3 chrIII:227772-228227 4.5e-07 52_[+2]_18 chrIV:1150707-1151078 8.3e-07 10_[-2]_60 chrXVI:689408-689824 1.4e-06 39_[+2]_31 chrVIII:379522-379945 1.4e-06 48_[-2]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWKTAAYCDKRAGRTCVBSGGTTCGABYCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TWKTAAYCDKRAGRTCVBSGGTTCGABYCC width=30 seqs=67 chrV:176940-177382 ( 19) CTTTCACCGTGGAGACCGGGGTTCGACTCC 1 chrVII:401452-401622 ( 51) CTTTCACCGTGGAGACCGGGGTTCGACTCC 1 chrV:354760-355238 ( 16) CTTTCACCGTGGAGACCGGGGTTCGACTCC 1 chrVII:541701-542070 ( 46) CTTTCACCGTGGAGACCGGGGTTCGACTCC 1 chrXIII:290652-290987 ( 63) CTTTCACCGTGGAGACCGGGGTTCGACTCC 1 chrVII:328432-328870 ( 13) CTTTCACCGTGGAGACCGGGGTTCGACTCC 1 chrXVI:860227-860561 ( 65) TTGCCATCGTTGGGCCCCCGGTTCGATTCC 1 chrXVI:572137-572546 ( 8) TTGCCATCGTTGGGCCCCCGGTTCGATTCC 1 chrIV:992692-993005 ( 64) TTGCCATCGTTGGGCCCCCGGTTCGATTCC 1 chrVII:185606-185922 ( 11) TCTTAATCATAAGGTTAGGGGTTCGAGCCC 1 chrIV:1352285-1352672 ( 49) TCTTAATCATAAGGTTAGGGGTTCGAGCCC 1 chrV:443109-443394 ( 12) TAATAACGCGGGGATCAGCGGTTCGATCCC 1 chrVII:738954-739332 ( 62) TAATAACGCGGGGATCAGCGGTTCGATCCC 1 chrXVI:581889-582265 ( 67) TCTTAATCATAAGGTTAGGGGTTCGAGCCC 1 chrV:135289-135639 ( 22) TCTTAATCATAAGGTTAGGGGTTCGAGCCC 1 chrXIV:569788-569981 ( 44) TAATAACGCGGGGATCAGCGGTTCGATCCC 1 chrI:166136-166457 ( 53) TTGCAAGGAAGAGGTCATCGGTTCGATTCC 1 chrIV:520823-521156 ( 64) TTTTGATCCGGACAACCCCGGTTCGAATCC 1 chrXI:162287-162707 ( 51) TTCTAATCAGAAGATTATGGGTTCGACCCC 1 chrX:355209-355309 ( 30) TTCTAATCAGAAGATTATGGGTTCGACCCC 1 chrIV:568737-569151 ( 19) TTCTAATCAGAAGATTATGGGTTCGACCCC 1 chrII:405712-406134 ( 36) TTCTAATCAGAAGATTATGGGTTCGACCCC 1 chrVII:405406-405681 ( 8) TTCTAATCAGAAGATTATGGGTTCGACCCC 1 chrIX:174927-175207 ( 46) TAGTAATGTGGAGATCATCGGTTCAAATCC 1 chrXV:353934-354267 ( 2) TAGTAATGTGGAGATCATCGGTTCAAATCC 1 chrXII:656823-657144 ( 12) TAGCATGGGAGAGGTCTCCGGTTCGATTCC 1 chrVIII:146102-146442 ( 31) TAGCATGGGAGAGGTCTCCGGTTCGATTCC 1 chrX:197217-197317 ( 25) TAGCATGGGAGAGGTCTCCGGTTCGATTCC 1 chrXVI:856744-857112 ( 56) TAGCATGGGAGAGGTCTCCGGTTCGATTCC 1 chrXV:110810-111154 ( 41) CTTCCAAGGTGGGGACACGGGTTCGATTCT 1 chrXIV:96119-96480 ( 3) CTTCCAAGGTGGGGACACGGGTTCGATTCT 1 chrV:492217-492608 ( 1) TACGAACCAGAAGATTCCAGGTTCAAGTCC 1 chrIV:619838-620188 ( 17) TACGAACCAGAAGATTCCAGGTTCAAGTCC 1 chrXIV:374718-375086 ( 67) AAGTCATCTGGAGGTCCTGTGTTCGATCCA 1 chrIV:1175708-1176033 ( 41) TCATAATCTGAAGGTCGAGAGTTCGAACCT 1 chrXV:976344-976609 ( 27) TCATAATCTGAAGGTCGAGAGTTCGAACCT 1 chrX:422784-422884 ( 71) TCATAATCTGAAGGTCGAGAGTTCGAACCT 1 chrXV:980572-980882 ( 70) AAGCATGCGAGAGGCCCTGGGTTCAATTCC 1 chrVII:412160-412526 ( 12) TAACACGCAGAACGTCCCCAGTTCGATCCT 1 chrXIII:372332-372601 ( 40) TAACACGCAGAACGTCCCCAGTTCGATCCT 1 chrVII:823323-823670 ( 69) TAACACGCAGAACGTCCCCAGTTCGATCCT 1 chrIV:488528-489069 ( 60) TTACACGGCGAAGATCCCGAGTTCGAACCT 1 chrXV:228158-228537 ( 67) TGTTAATCGCAAGATCGTGAGTTCAACCCT 1 chrXVI:810569-810839 ( 55) TGTTAATCGCAAGATCGTGAGTTCAACCCT 1 chrXIV:102557-102963 ( 39) TGTTAATCGCAAGATCGTGAGTTCAACCCT 1 chrX:541403-541503 ( 60) TTGTCGCGTGCCAGATCGGGGTTCAATTCC 1 chrXV:571827-572111 ( 70) TTGTCGCGTGCCAGATCGGGGTTCAATTCC 1 chrVII:544433-544825 ( 9) TTGTCGCGTGCCAGATCGGGGTTCAATTCC 1 chrXIII:168656-169057 ( 37) ACGAAATCTTGAGATCGGGCGTTCGACTCG 1 chrIV:437636-437965 ( 63) TTTGGGCTTTGCCCGCGCAGGTTCGAGTCC 1 chrX:542829-542929 ( 1) ACGAAATCTTGAGATCGGGCGTTCGACTCG 1 chrXIII:259019-259390 ( 15) TTTGGGCTTTGCCCGCGCAGGTTCGAGTCC 1 chrVII:1004071-1004418 ( 53) TTGTAATGCAAAGGTCGTTAGTTCAATTCT 1 chrXV:288046-288410 ( 62) ACGAAATCTTGAGATCGGGCGTTCGACTCG 1 chrIV:980817-981182 ( 36) TTTGGGCTTTGCCCGCGCAGGTTCGAGTCC 1 chrII:226934-227284 ( 57) TTTGGGCTTTGCCCGCGCAGGTTCGAGTCC 1 chrVII:110486-110817 ( 35) TTGTGGCCGATGAAACCCTGGTTCGATTCT 1 chrXI:313302-313620 ( 1) TTGTGGCCGATGAAACCCTGGTTCGATTCT 1 chrIV:1305492-1305821 ( 66) TTGGGCTTTGGCCCGCGCAGGTTCGAGTCC 1 chrXVI:560053-560440 ( 13) AAGTTATCTGGAGGTCCTGTGTTCGATCCA 1 chrXII:818492-818805 ( 42) TTCCGGTGGCTGTGATCCGGGTTCGAGTCC 1 chrIV:1095236-1095610 ( 8) AAGATATCTGGAGGTCCTGTGTTCGATCCA 1 chrXV:710086-710342 ( 68) TCATAACCCTGATGTCCTCGGATCGAAACC 1 chrIII:227772-228227 ( 53) CTTGGGCTCTGCCCGCGCTGGTTCAAATCC 1 chrIV:1150707-1151078 ( 11) ATTGGGTTTTACCTGCGCAGGTTCGAATCC 1 chrXVI:689408-689824 ( 40) GTTGGGCTCTGCCCGCGCTGGTTCAAATCC 1 chrVIII:379522-379945 ( 49) TACCATTTGAGGGATCTGAAGATCAAGTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWKTAAYCDKRAGRTCVBSGGTTCGABYCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 40825 bayes= 7.53993 E= 1.3e-210 -135 -54 -371 127 -10 -26 -213 74 -89 -54 87 18 -235 37 -39 82 90 19 -13 -335 108 -139 -1 -176 -335 81 -39 65 -1271 161 45 -118 -44 -54 81 -3 -103 -171 104 35 18 -213 141 -176 90 -26 45 -1271 -89 -13 168 -335 18 -91 145 -434 -44 -171 -71 97 -1271 199 -1271 -44 -26 104 45 -203 -276 104 61 -26 -118 45 141 -203 -76 -213 190 -276 -1271 -1271 235 -1271 -335 -1271 -1271 167 -1271 -1271 -1271 172 -1271 235 -1271 -1271 -44 -1271 199 -1271 172 -1271 -1271 -1271 -89 37 -1 35 -434 93 -1271 101 -1271 235 -1271 -1271 -276 181 -213 -44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWKTAAYCDKRAGRTCVBSGGTTCGABYCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 67 E= 1.3e-210 0.119403 0.134328 0.014925 0.731343 0.283582 0.164179 0.044776 0.507463 0.164179 0.134328 0.358209 0.343284 0.059701 0.253731 0.149254 0.537313 0.567164 0.223881 0.179104 0.029851 0.641791 0.074627 0.194030 0.089552 0.029851 0.343284 0.149254 0.477612 0.000000 0.597015 0.268657 0.134328 0.223881 0.134328 0.343284 0.298507 0.149254 0.059701 0.402985 0.388060 0.343284 0.044776 0.522388 0.089552 0.567164 0.164179 0.268657 0.000000 0.164179 0.179104 0.626866 0.029851 0.343284 0.104478 0.537313 0.014925 0.223881 0.059701 0.119403 0.597015 0.000000 0.776119 0.000000 0.223881 0.253731 0.402985 0.268657 0.074627 0.044776 0.402985 0.298507 0.253731 0.134328 0.268657 0.522388 0.074627 0.179104 0.044776 0.731343 0.044776 0.000000 0.000000 1.000000 0.000000 0.029851 0.000000 0.000000 0.970149 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.223881 0.000000 0.776119 0.000000 1.000000 0.000000 0.000000 0.000000 0.164179 0.253731 0.194030 0.388060 0.014925 0.373134 0.000000 0.611940 0.000000 1.000000 0.000000 0.000000 0.044776 0.686567 0.044776 0.223881 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWKTAAYCDKRAGRTCVBSGGTTCGABYCC MEME-2 regular expression -------------------------------------------------------------------------------- T[TA][GT][TC][AC]A[TC][CG][GTA][GT][GA][AG]G[GA][TA][CT][CGA][CGT][GC]GGTTC[GA]A[TC][TC]C[CT] -------------------------------------------------------------------------------- Time 615.34 secs. ******************************************************************************** ******************************************************************************** MOTIF WACAYCCRTACATYY MEME-3 width = 15 sites = 72 llr = 796 E-value = 6.7e-053 ******************************************************************************** -------------------------------------------------------------------------------- Motif WACAYCCRTACATYY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3619:::417:8:21 pos.-specific C 119:5a9:1:a2353 probability G :3:::::6:3::::1 matrix T 51::5:1:8:::735 bits 2.4 2.1 * * 1.9 * * * 1.6 * ** * Relative 1.4 * ** * Entropy 1.2 ** ** ** (15.9 bits) 0.9 ****** *** 0.7 *********** 0.5 ************* 0.2 *************** 0.0 --------------- Multilevel TACATCCGTACATCT consensus AG C A G CTC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACAYCCRTACATYY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrXIII:225374-225699 + 58 5.31e-08 ATCCGTGCAT TACATCCGTACATTC TATTTTTTAT chrII:592925-593248 - 48 6.30e-08 CCTCTTTTCT TGCATCCATACATCT TTGAACTCCA chrIV:221995-222277 - 48 7.63e-08 CGACGGTTAC CACACCCGTACACCC TTATCTCATT chrXV:1028732-1029069 - 56 7.63e-08 TTTACCATTG TGCATCCGTACATTT GATTTGTTTA chrII:45034-45324 + 40 9.48e-08 GAGACAATCA TGCATCCGTACATTC TATGTATGTT chrXV:678864-679160 - 47 9.48e-08 TTTGGGACCA TACATCCGTACATAT TGTGGACCCA chrXI:108781-109047 + 56 1.18e-07 AACACATTAC AACATCCGTACATTT AGTTGGCTCC chrV:396239-396546 + 36 1.18e-07 CCCTGTTGTA TACATCCGTACACTT TTGTGAACCC chrXIII:296810-297134 + 43 1.18e-07 GCATTACCCG CACACCCATACATCT AGAACTTTTT chrVI:65018-65308 - 53 1.37e-07 TCTCCATGTC AACACCCGTACATAT TCAGAGATAA chrVII:534821-535177 - 54 1.57e-07 ATTTTATATT TGCATCCGTGCATTT GTGTAACCCA chrXII:781488-781835 - 44 1.57e-07 CTAGAGAAAA TGCATCCGTGCATTT TCATAAACCC chrIV:1359439-1359777 + 37 1.90e-07 AAAGACATTA AACATCCGTACATCA CGCACCCATG chrVII:254163-254546 - 42 1.90e-07 TATTTGAGGT TGCACCCGTGCATAT TGAAAGATGT chrXV:92951-93289 - 41 2.29e-07 ATGACACAAC TACATCCGTACACAT GTGACGTTCG chrXII:796450-796811 - 53 2.60e-07 TTCTATCTTT TGCATCCGTGCCTCC TGGATAATAA chrXIII:732063-732382 + 33 2.98e-07 CAAGACATAA TACATCCGCACATCG CGCATGTGTG chrX:607885-607985 + 41 3.49e-07 ATGCCAACCC TCCATCCATACATCC TATTTAACCC chrXII:713185-713533 - 62 4.06e-07 TGCAGACTAT CACATCCGTACATAT GTATAAAAAA chrVII:555355-555675 + 44 4.06e-07 ACATCCCTTT TACACCCGTGCATTA AAAGTGTTTG chrVII:788366-788699 - 46 4.59e-07 TATTCCTTAC AACATCCGTGCATAC TCTAAACCCA chrXVI:731952-732275 + 40 5.90e-07 GCATCGTCAG TACACCCATACCTTT AGGATGGTTG chrXVI:406213-406533 + 47 5.90e-07 TATGAAGTTT AACATCCGTACCTTT CCACCTCCAA chrII:605756-606107 + 34 5.90e-07 CTGACAGTTT TACACCTGTACATCT TCACCATCAC chrVI:221786-222036 - 58 6.76e-07 TAAGACTTTT TTCACCCGTACATTT TTAACACCCA chrIV:130587-130933 - 38 7.53e-07 GACATATACA AACATCCGCACATTT TATAGCTTTC chrXI:618839-619169 - 56 7.53e-07 AAATACTATT TCCATCCGTGCCTCT AATAGATTTG chrIV:1300964-1301288 + 32 1.07e-06 TTTTCCTTCA AACATCCGTGCACTG TGGATGTTTG chrXII:922131-922515 + 71 1.07e-06 GTTTGAAATT GACACCCGTACATAT TCCAATTCTC chrV:423119-423455 + 34 1.07e-06 GCTGCATATT TACCTCCGTACACCT TCTACACCCA chrXII:710568-710926 + 35 1.18e-06 AAGCAGGAAT CACACCCACGCATCT CATTTTGCGT chrXIII:754445-754711 - 43 1.18e-06 AGACATAAAA TACCCCCATACATCC AGAATAGCGT chrXIV:63142-63475 - 59 1.30e-06 AATACTACTT TACATCCGAACATTT TAGCAACCCA chrXVI:302727-302951 + 39 1.46e-06 AGCTAACTTG TACATCCAGACATCC TAAAACACCC chrV:85092-85567 + 20 1.46e-06 AGTGATATCA TCCACCCATACCCCT CGATGTATTC chrIV:217230-217474 + 11 2.21e-06 GGCCCTGCTT TGAACCCGTACATTT TATTCTATAA chrVIII:382949-383291 - 30 2.21e-06 GAACATCCGA GACACCCATACATCA TGAAAATAAA chrXV:216288-216660 + 26 2.47e-06 ATTTTATCGG AACATCCGAGCACCC GCGCCTTCCT chrVII:648978-649322 - 48 2.72e-06 GGACATTTTA AACATCCGTACAACG AGAACCCATA chrXI:313302-313620 + 84 3.30e-06 AATGTTTGGT TACATCTGCACATCT GG chrIII:178340-178664 - 19 3.67e-06 GGACTTAATA AACATCTGTACATTT TACTACTCTT chrIV:358182-358391 - 12 4.04e-06 TGGTGTACAC ACCACCCATACATTA TCTGACAAGG chrXVI:135438-135848 - 32 4.04e-06 AAAGACTGCT AAAATCCGTGCACCC CGTAAAGTAT chrVIII:74991-75341 + 36 4.04e-06 CCTGCAAGTT CACACCTGTACATTT TCTACATCCG chrII:332362-332698 + 44 4.41e-06 ATTTCCTTGC TGCACCCATACAATT CTAAACCCAA chrXV:391387-392047 + 48 4.87e-06 GTAACTGATT AACATACGTACACCC CGGCATAAAA chrXV:866578-866917 + 40 4.87e-06 ATTTTTTCCC TACATCCAAGCATTC TGGGTTTGTA chrIV:392488-392898 - 16 7.06e-06 TAATAATAAT GACACCCATGCATAG TGATGATAAT chrVII:310533-310912 + 13 7.75e-06 TAACCAATGT AACATCTGTACACCA GGGACCCACA chrXII:1028274-1028547 + 37 8.46e-06 AAGACAAAAT ATCACCCATGCACCA AAATGTATGG chrXIV:764017-764301 - 35 9.19e-06 TAACGTAGAC AGCACCCAGACACTC AGGACCCTGA chrIV:835810-836123 + 34 1.09e-05 CAACGGCGCG CACACCCACGCCCCG CAACCGCACA chrII:167963-168165 + 37 1.09e-05 AGACATATTT TTCACCAGTACATCT TGGAAAACGG chrXVI:828925-829452 - 82 1.19e-05 GACA TGCATCCTTACATCA TCCGGTCAAT chrXVI:575161-575425 + 56 1.29e-05 CTTTGCCTGA AGCACCCACACACAA GAACAGGAAT chrVIII:296887-297189 + 68 1.51e-05 CACAATTTCG TCCACCAGTACATCA CTGCATGCTC chrI:68324-68614 + 7 1.64e-05 GGGTAA AACAGCCATGCACCG CAGCACGTCG chrXI:158261-158566 + 36 1.76e-05 TTCATTTATT TCAACCCGTGCACAC TGGAAATAAA chrXV:253849-254076 - 65 1.76e-05 CAAAACTTTT TTAATCCGTACACCG CGCGTATAAA chrXV:968051-968427 - 79 2.06e-05 AGCAGCG CACGCCCACGCACCC CACGCTTTTG chrIX:316169-316572 + 31 2.06e-05 TTTTCAGACT AGAACCCATACATTA TTTTACAAAC chrVII:856741-857034 - 26 2.22e-05 TTTGAGGGTA CCCGCCCATACACCG CACCAATGGA chrXVI:520190-520520 + 58 2.22e-05 GCCTGAGTGT TCCACCCAGGCCTCG CCGGAGGAAA chrVII:481169-481597 + 71 2.38e-05 CCTTATCAAT AGCATCCAAACCCTT CTTCTTTCTG chrX:293867-293967 - 21 2.76e-05 TTATAATTGC TGCACCCCTGCAACT CCAAACAACT chrVII:592368-592949 + 3 2.76e-05 CT CTCGCCCGTGCCTCT CCGTGTTCGA chrXI:99750-99998 + 25 2.96e-05 TCCATGCCCG TGCACCCACGGCTCC TCGGAGGCCG chrXII:899239-899700 - 60 3.18e-05 CTCTAATCTT AGCATACATACCTCG GACTAAGTAC chrXIV:426871-427224 + 27 3.41e-05 TATATAAATA TACATACACACATAC ATGCACGCAC chrXII:731971-732272 - 81 3.41e-05 ACCCT TGCATCCGAAGATAT CAGAGATTTT chrVII:545479-545785 - 69 3.92e-05 CCAGCTCTTT AGCATCCATAGCTAC TTCTTGCATT chrV:354760-355238 - 79 4.19e-05 TGGCTCC TAACCCCATACATAC ACTGTATGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACAYCCRTACATYY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:225374-225699 5.3e-08 57_[+3]_28 chrII:592925-593248 6.3e-08 47_[-3]_38 chrIV:221995-222277 7.6e-08 47_[-3]_38 chrXV:1028732-1029069 7.6e-08 55_[-3]_30 chrII:45034-45324 9.5e-08 39_[+3]_46 chrXV:678864-679160 9.5e-08 46_[-3]_39 chrXI:108781-109047 1.2e-07 55_[+3]_30 chrV:396239-396546 1.2e-07 35_[+3]_50 chrXIII:296810-297134 1.2e-07 42_[+3]_43 chrVI:65018-65308 1.4e-07 52_[-3]_33 chrVII:534821-535177 1.6e-07 53_[-3]_32 chrXII:781488-781835 1.6e-07 43_[-3]_42 chrIV:1359439-1359777 1.9e-07 36_[+3]_49 chrVII:254163-254546 1.9e-07 41_[-3]_44 chrXV:92951-93289 2.3e-07 40_[-3]_45 chrXII:796450-796811 2.6e-07 52_[-3]_33 chrXIII:732063-732382 3e-07 32_[+3]_53 chrX:607885-607985 3.5e-07 40_[+3]_45 chrXII:713185-713533 4.1e-07 61_[-3]_24 chrVII:555355-555675 4.1e-07 43_[+3]_42 chrVII:788366-788699 4.6e-07 45_[-3]_40 chrXVI:731952-732275 5.9e-07 39_[+3]_46 chrXVI:406213-406533 5.9e-07 46_[+3]_39 chrII:605756-606107 5.9e-07 33_[+3]_52 chrVI:221786-222036 6.8e-07 57_[-3]_28 chrIV:130587-130933 7.5e-07 37_[-3]_48 chrXI:618839-619169 7.5e-07 55_[-3]_30 chrIV:1300964-1301288 1.1e-06 31_[+3]_54 chrXII:922131-922515 1.1e-06 70_[+3]_15 chrV:423119-423455 1.1e-06 33_[+3]_52 chrXII:710568-710926 1.2e-06 34_[+3]_51 chrXIII:754445-754711 1.2e-06 42_[-3]_43 chrXIV:63142-63475 1.3e-06 58_[-3]_27 chrXVI:302727-302951 1.5e-06 38_[+3]_47 chrV:85092-85567 1.5e-06 19_[+3]_66 chrIV:217230-217474 2.2e-06 10_[+3]_75 chrVIII:382949-383291 2.2e-06 29_[-3]_56 chrXV:216288-216660 2.5e-06 25_[+3]_60 chrVII:648978-649322 2.7e-06 47_[-3]_38 chrXI:313302-313620 3.3e-06 83_[+3]_2 chrIII:178340-178664 3.7e-06 18_[-3]_67 chrIV:358182-358391 4e-06 11_[-3]_74 chrXVI:135438-135848 4e-06 31_[-3]_54 chrVIII:74991-75341 4e-06 35_[+3]_50 chrII:332362-332698 4.4e-06 43_[+3]_42 chrXV:391387-392047 4.9e-06 47_[+3]_38 chrXV:866578-866917 4.9e-06 39_[+3]_46 chrIV:392488-392898 7.1e-06 15_[-3]_70 chrVII:310533-310912 7.7e-06 12_[+3]_73 chrXII:1028274-1028547 8.5e-06 36_[+3]_49 chrXIV:764017-764301 9.2e-06 34_[-3]_51 chrIV:835810-836123 1.1e-05 33_[+3]_52 chrII:167963-168165 1.1e-05 36_[+3]_49 chrXVI:828925-829452 1.2e-05 81_[-3]_4 chrXVI:575161-575425 1.3e-05 55_[+3]_30 chrVIII:296887-297189 1.5e-05 67_[+3]_18 chrI:68324-68614 1.6e-05 6_[+3]_79 chrXI:158261-158566 1.8e-05 35_[+3]_50 chrXV:253849-254076 1.8e-05 64_[-3]_21 chrXV:968051-968427 2.1e-05 78_[-3]_7 chrIX:316169-316572 2.1e-05 30_[+3]_55 chrVII:856741-857034 2.2e-05 25_[-3]_60 chrXVI:520190-520520 2.2e-05 57_[+3]_28 chrVII:481169-481597 2.4e-05 70_[+3]_15 chrX:293867-293967 2.8e-05 20_[-3]_65 chrVII:592368-592949 2.8e-05 2_[+3]_83 chrXI:99750-99998 3e-05 24_[+3]_61 chrXII:899239-899700 3.2e-05 59_[-3]_26 chrXIV:426871-427224 3.4e-05 26_[+3]_59 chrXII:731971-732272 3.4e-05 80_[-3]_5 chrVII:545479-545785 3.9e-05 68_[-3]_17 chrV:354760-355238 4.2e-05 78_[-3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACAYCCRTACATYY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WACAYCCRTACATYY width=15 seqs=72 chrXIII:225374-225699 ( 58) TACATCCGTACATTC 1 chrII:592925-593248 ( 48) TGCATCCATACATCT 1 chrIV:221995-222277 ( 48) CACACCCGTACACCC 1 chrXV:1028732-1029069 ( 56) TGCATCCGTACATTT 1 chrII:45034-45324 ( 40) TGCATCCGTACATTC 1 chrXV:678864-679160 ( 47) TACATCCGTACATAT 1 chrXI:108781-109047 ( 56) AACATCCGTACATTT 1 chrV:396239-396546 ( 36) TACATCCGTACACTT 1 chrXIII:296810-297134 ( 43) CACACCCATACATCT 1 chrVI:65018-65308 ( 53) AACACCCGTACATAT 1 chrVII:534821-535177 ( 54) TGCATCCGTGCATTT 1 chrXII:781488-781835 ( 44) TGCATCCGTGCATTT 1 chrIV:1359439-1359777 ( 37) AACATCCGTACATCA 1 chrVII:254163-254546 ( 42) TGCACCCGTGCATAT 1 chrXV:92951-93289 ( 41) TACATCCGTACACAT 1 chrXII:796450-796811 ( 53) TGCATCCGTGCCTCC 1 chrXIII:732063-732382 ( 33) TACATCCGCACATCG 1 chrX:607885-607985 ( 41) TCCATCCATACATCC 1 chrXII:713185-713533 ( 62) CACATCCGTACATAT 1 chrVII:555355-555675 ( 44) TACACCCGTGCATTA 1 chrVII:788366-788699 ( 46) AACATCCGTGCATAC 1 chrXVI:731952-732275 ( 40) TACACCCATACCTTT 1 chrXVI:406213-406533 ( 47) AACATCCGTACCTTT 1 chrII:605756-606107 ( 34) TACACCTGTACATCT 1 chrVI:221786-222036 ( 58) TTCACCCGTACATTT 1 chrIV:130587-130933 ( 38) AACATCCGCACATTT 1 chrXI:618839-619169 ( 56) TCCATCCGTGCCTCT 1 chrIV:1300964-1301288 ( 32) AACATCCGTGCACTG 1 chrXII:922131-922515 ( 71) GACACCCGTACATAT 1 chrV:423119-423455 ( 34) TACCTCCGTACACCT 1 chrXII:710568-710926 ( 35) CACACCCACGCATCT 1 chrXIII:754445-754711 ( 43) TACCCCCATACATCC 1 chrXIV:63142-63475 ( 59) TACATCCGAACATTT 1 chrXVI:302727-302951 ( 39) TACATCCAGACATCC 1 chrV:85092-85567 ( 20) TCCACCCATACCCCT 1 chrIV:217230-217474 ( 11) TGAACCCGTACATTT 1 chrVIII:382949-383291 ( 30) GACACCCATACATCA 1 chrXV:216288-216660 ( 26) AACATCCGAGCACCC 1 chrVII:648978-649322 ( 48) AACATCCGTACAACG 1 chrXI:313302-313620 ( 84) TACATCTGCACATCT 1 chrIII:178340-178664 ( 19) AACATCTGTACATTT 1 chrIV:358182-358391 ( 12) ACCACCCATACATTA 1 chrXVI:135438-135848 ( 32) AAAATCCGTGCACCC 1 chrVIII:74991-75341 ( 36) CACACCTGTACATTT 1 chrII:332362-332698 ( 44) TGCACCCATACAATT 1 chrXV:391387-392047 ( 48) AACATACGTACACCC 1 chrXV:866578-866917 ( 40) TACATCCAAGCATTC 1 chrIV:392488-392898 ( 16) GACACCCATGCATAG 1 chrVII:310533-310912 ( 13) AACATCTGTACACCA 1 chrXII:1028274-1028547 ( 37) ATCACCCATGCACCA 1 chrXIV:764017-764301 ( 35) AGCACCCAGACACTC 1 chrIV:835810-836123 ( 34) CACACCCACGCCCCG 1 chrII:167963-168165 ( 37) TTCACCAGTACATCT 1 chrXVI:828925-829452 ( 82) TGCATCCTTACATCA 1 chrXVI:575161-575425 ( 56) AGCACCCACACACAA 1 chrVIII:296887-297189 ( 68) TCCACCAGTACATCA 1 chrI:68324-68614 ( 7) AACAGCCATGCACCG 1 chrXI:158261-158566 ( 36) TCAACCCGTGCACAC 1 chrXV:253849-254076 ( 65) TTAATCCGTACACCG 1 chrXV:968051-968427 ( 79) CACGCCCACGCACCC 1 chrIX:316169-316572 ( 31) AGAACCCATACATTA 1 chrVII:856741-857034 ( 26) CCCGCCCATACACCG 1 chrXVI:520190-520520 ( 58) TCCACCCAGGCCTCG 1 chrVII:481169-481597 ( 71) AGCATCCAAACCCTT 1 chrX:293867-293967 ( 21) TGCACCCCTGCAACT 1 chrVII:592368-592949 ( 3) CTCGCCCGTGCCTCT 1 chrXI:99750-99998 ( 25) TGCACCCACGGCTCC 1 chrXII:899239-899700 ( 60) AGCATACATACCTCG 1 chrXIV:426871-427224 ( 27) TACATACACACATAC 1 chrXII:731971-732272 ( 81) TGCATCCGAAGATAT 1 chrVII:545479-545785 ( 69) AGCATCCATAGCTAC 1 chrV:354760-355238 ( 79) TAACCCCATACATAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACAYCCRTACATYY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 49450 bayes= 9.55614 E= 6.7e-053 1 -65 -223 80 87 -82 43 -213 -187 223 -1281 -1281 159 -223 -223 -1281 -1281 123 -382 80 -287 229 -1281 -1281 -345 220 -1281 -213 36 -382 157 -445 -213 -65 -223 133 119 -1281 64 -1281 -1281 229 -223 -1281 145 -23 -1281 -1281 -287 50 -1281 116 -64 131 -1281 7 -113 43 -50 59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACAYCCRTACATYY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 72 E= 6.7e-053 0.305556 0.125000 0.041667 0.527778 0.555556 0.111111 0.263889 0.069444 0.083333 0.916667 0.000000 0.000000 0.916667 0.041667 0.041667 0.000000 0.000000 0.458333 0.013889 0.527778 0.041667 0.958333 0.000000 0.000000 0.027778 0.902778 0.000000 0.069444 0.388889 0.013889 0.583333 0.013889 0.069444 0.125000 0.041667 0.763889 0.694444 0.000000 0.305556 0.000000 0.000000 0.958333 0.041667 0.000000 0.833333 0.166667 0.000000 0.000000 0.041667 0.277778 0.000000 0.680556 0.194444 0.486111 0.000000 0.319444 0.138889 0.263889 0.138889 0.458333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WACAYCCRTACATYY MEME-3 regular expression -------------------------------------------------------------------------------- [TA][AG]CA[TC]CC[GA]T[AG]CA[TC][CT][TC] -------------------------------------------------------------------------------- Time 901.29 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:216288-216660 1.24e-02 25_[+3(2.47e-06)]_9_[+3(9.63e-05)]_\ 36 chrIV:992692-993005 2.32e-11 40_[+1(1.98e-07)]_4_[+2(1.24e-11)]_\ 7 chrIV:1467542-1467952 5.09e-01 100 chrVII:413347-413675 7.88e-01 100 chrXII:793753-795223 6.42e-01 100 chrXII:460433-460810 3.59e-01 100 chrVII:328432-328870 1.50e-07 12_[+2(7.72e-12)]_58 chrXV:88176-88586 2.76e-01 100 chrXIV:716122-716636 9.71e-01 100 chrIX:248666-249421 6.57e-01 100 chrXVI:431854-432239 7.55e-01 100 chrXV:160327-160737 7.86e-01 100 chrXV:1028732-1029069 3.96e-04 55_[-3(7.63e-08)]_30 chrVIII:455535-456128 9.19e-01 100 chrX:139163-139263 3.26e-01 100 chrXIII:652330-653005 6.67e-01 100 chrIV:889183-889339 2.65e-01 100 chrVII:700492-701202 3.50e-01 100 chrXIV:502905-503315 1.89e-01 100 chrX:617762-617862 3.98e-05 38_[+1(6.69e-09)]_43 chrXII:950506-951033 9.60e-02 100 chrV:434445-434779 1.52e-01 100 chrXIII:914885-915530 8.60e-01 100 chrXIV:10218-10440 9.21e-01 100 chrXII:729861-730271 6.45e-01 100 chrXV:443754-444105 5.05e-01 100 chrXIII:288775-289185 9.57e-01 100 chrXVI:585763-587065 6.84e-02 100 chrI:166136-166457 9.55e-14 27_[+1(5.17e-10)]_6_[+2(1.97e-11)]_\ 18 chrIV:1239797-1240207 9.77e-01 100 chrII:376069-376192 6.66e-01 100 chrVII:555355-555675 1.12e-03 43_[+3(4.06e-07)]_1_[-3(3.66e-05)]_\ 26 chrV:78969-79071 3.46e-01 100 chrIV:722289-722887 8.32e-01 100 chrV:423119-423455 6.87e-03 33_[+3(1.07e-06)]_52 chrVIII:172764-173174 4.68e-01 100 chrXII:704160-704650 1.14e-01 100 chrXIII:759325-759524 2.66e-03 22_[-1(1.92e-06)]_59 chrVIII:531452-531773 9.92e-01 100 chrVIII:451498-451770 2.44e-01 100 chrVII:405406-405681 3.69e-07 7_[+2(3.57e-11)]_63 chrXIII:431717-432309 1.32e-01 100 chrXV:594261-594575 6.01e-05 31_[-1(5.33e-07)]_50 chrXI:385164-385437 6.27e-01 100 chrV:396841-397251 1.98e-01 100 chrXV:1028074-1028293 1.00e+00 100 chrXV:605460-605870 4.81e-01 100 chrII:226934-227284 9.71e-11 22_[+1(1.16e-09)]_15_[+2(1.90e-08)]_\ 14 chrIV:356530-356940 2.36e-01 100 chrVII:148477-148629 6.49e-01 100 chrXV:236149-236478 2.84e-01 100 chrV:61224-61379 9.85e-01 100 chrXIV:518836-519246 4.89e-01 100 chrXII:899239-899700 6.46e-02 59_[-3(3.18e-05)]_26 chrVII:458-691 1.40e-01 100 chrIV:550888-551247 9.89e-01 100 chrV:487240-487549 9.20e-01 100 chrI:77108-77518 4.11e-01 100 chrV:143827-144170 9.41e-01 100 chrXI:99750-99998 7.96e-02 24_[+3(2.96e-05)]_61 chrIV:601255-601665 6.65e-02 100 chrVII:311037-312205 4.90e-01 100 chrXIV:355235-355476 1.91e-02 100 chrXII:808912-809599 9.90e-01 100 chrV:85092-85567 1.70e-03 19_[+3(1.46e-06)]_66 chrXII:1019018-1019328 1.74e-01 100 chrV:302880-303290 5.43e-01 100 chrII:169199-169609 6.06e-01 100 chrXIV:662132-662542 1.85e-01 100 chrVII:787100-787202 8.89e-01 100 chrXIII:279863-280231 3.72e-01 100 chrXVI:280567-281499 9.71e-02 100 chrXIV:501117-501424 9.63e-01 100 chrVI:225118-225316 6.47e-01 100 chrXII:713185-713533 1.58e-03 61_[-3(4.06e-07)]_24 chrXIII:290652-290987 1.50e-07 62_[+2(7.72e-12)]_8 chrXIV:303217-303650 7.31e-01 100 chrXIII:225374-225699 3.75e-04 57_[+3(5.31e-08)]_28 chrXII:232101-234077 4.82e-01 100 chrXIV:102557-102963 5.61e-10 12_[+1(2.17e-08)]_7_[+2(1.34e-08)]_\ 32 chrXI:383888-384298 5.96e-01 100 chrIV:359411-359782 1.10e-05 37_[+1(1.70e-09)]_44 chrII:235113-235523 9.50e-01 100 chrXII:602593-602732 8.62e-01 100 chrVIII:150929-151339 8.71e-01 100 chrXII:499030-499660 7.04e-02 100 chrXVI:694543-694953 3.05e-01 100 chrXVI:856744-857112 1.81e-12 30_[+1(9.59e-10)]_6_[+2(2.68e-10)]_\ 15 chrXII:722856-723200 7.87e-01 100 chrII:408694-408958 7.02e-01 100 chrV:139354-139465 6.33e-01 100 chrIX:183361-183672 4.94e-05 21_[-1(2.92e-09)]_60 chrXVI:173302-174003 3.26e-01 100 chrVII:544433-544825 2.58e-07 8_[-2(1.60e-08)]_5_[-1(3.19e-06)]_\ 38 chrI:169405-169815 8.86e-01 100 chrII:89071-89197 9.76e-01 100 chrXIII:251800-252210 6.91e-01 100 chrIII:107197-107675 3.86e-01 100 chrV:69039-69441 3.27e-02 100 chrXIV:569788-569981 3.35e-13 43_[-2(1.70e-11)]_7_[-1(2.92e-09)]_\ 1 chrIV:1450299-1450709 9.04e-01 100 chrVII:545479-545785 5.23e-02 68_[-3(3.92e-05)]_17 chrXV:841741-841914 8.52e-01 100 chrXV:348814-349345 9.95e-01 100 chrV:131002-131305 3.19e-03 24_[-1(3.02e-06)]_57 chrXI:99873-100283 7.18e-01 100 chrIV:230565-230834 2.84e-01 100 chrII:414811-415221 1.61e-01 100 chrXVI:303713-303927 1.71e-01 100 chrII:88065-88625 9.61e-01 100 chrIV:1095236-1095610 1.52e-08 7_[-2(1.23e-07)]_25_[-1(3.67e-08)]_\ 19 chrVII:823323-823670 4.28e-09 42_[+1(2.40e-07)]_7_[+2(7.73e-09)]_\ 2 chrXII:731971-732272 4.89e-07 25_[+1(6.69e-09)]_36_[-3(3.41e-05)]_\ 5 chrVII:779734-779872 3.31e-01 100 chrII:604699-605031 8.92e-01 100 chrXI:355114-356571 5.76e-01 100 chrXVI:560053-560440 3.00e-09 12_[-2(2.46e-08)]_25_[-1(3.67e-08)]_\ 14 chrXIII:550003-550413 9.54e-01 100 chrXV:832413-832802 9.18e-01 100 chrVI:223354-223514 7.70e-02 13_[+1(6.23e-05)]_68 chrIII:142621-142917 9.44e-04 26_[-1(1.98e-07)]_55 chrXV:866578-866917 7.70e-03 39_[+3(4.87e-06)]_3_[-3(8.46e-06)]_\ 28 chrXI:313302-313620 3.49e-08 [-2(2.07e-08)]_53_[+3(3.30e-06)]_2 chrXVI:576060-576399 3.28e-01 100 chrVII:806792-807202 7.95e-01 100 chrVII:481642-482674 7.64e-01 100 chrVII:989705-990474 9.44e-01 100 chrVI:221786-222036 3.16e-03 57_[-3(6.76e-07)]_28 chrXVI:572137-572546 1.72e-08 7_[+2(1.24e-11)]_63 chrXVI:810569-810839 6.26e-10 28_[+1(2.17e-08)]_7_[+2(1.34e-08)]_\ 16 chrXVI:587003-587652 8.52e-01 100 chrXIV:217204-217434 2.08e-01 100 chrVIII:379522-379945 1.77e-03 48_[-2(1.44e-06)]_22 chrII:605756-606107 9.01e-05 33_[+3(5.90e-07)]_26_[-3(9.63e-05)]_\ 11 chrXIII:297347-298869 7.06e-01 100 chrVII:648978-649322 8.14e-03 32_[-3(2.06e-05)]_[-3(2.72e-06)]_38 chrIV:221995-222277 9.06e-06 23_[-3(4.80e-05)]_9_[-3(7.63e-08)]_\ 38 chrIX:177619-178034 7.68e-01 100 chrVI:157841-158167 3.53e-04 27_[-1(3.67e-08)]_54 chrV:424780-425191 5.16e-01 100 chrXV:779733-781037 3.52e-01 100 chrX:197217-197317 2.86e-12 24_[-2(2.68e-10)]_6_[-1(9.59e-10)]_\ 21 chrXII:709737-709907 6.54e-01 100 chrX:123450-123550 6.36e-01 100 chrVIII:48188-48654 9.50e-01 100 chrXVI:770691-770947 3.90e-01 100 chrIV:619838-620188 1.49e-09 16_[-2(2.11e-09)]_6_[-1(4.91e-07)]_\ 29 chrIV:45664-46074 3.04e-01 100 chrXV:407606-407966 5.69e-03 14_[-1(5.79e-05)]_67 chrX:651944-652044 8.16e-01 100 chrIV:356405-356633 6.46e-01 100 chrXII:797021-797353 9.30e-01 100 chrX:606081-606181 1.14e-01 100 chrIV:368849-369188 2.62e-01 100 chrII:405712-406134 1.00e-07 35_[+2(3.57e-11)]_35 chrVI:82196-82438 8.01e-01 100 chrI:141701-142108 4.56e-01 100 chrXI:326738-327233 1.67e-01 100 chrV:174701-175052 5.71e-01 100 chrVIII:296887-297189 2.26e-02 67_[+3(1.51e-05)]_18 chrII:301181-301749 8.59e-01 100 chrXVI:840623-840753 2.44e-01 100 chrXV:110300-110519 4.51e-01 100 chrVII:845487-845816 9.44e-04 54_[+1(1.98e-07)]_27 chrXIII:754445-754711 2.70e-03 42_[-3(1.18e-06)]_43 chrXIV:499406-499564 8.66e-01 100 chrV:441837-442582 7.64e-01 100 chrXIII:555979-556389 5.14e-01 100 chrIV:1269984-1270381 5.83e-02 100 chrIII:149767-150088 2.85e-01 100 chrIV:1468093-1468503 8.82e-01 100 chrIV:357402-357756 1.49e-03 12_[-2(1.66e-05)]_58 chrXII:930622-931032 4.52e-02 100 chrIV:519610-519898 2.69e-05 45_[+1(4.72e-08)]_36 chrVII:1000061-1000528 3.21e-01 100 chrXV:254518-254634 6.59e-01 100 chrIV:1237231-1237641 5.12e-01 100 chrVII:878559-878984 2.84e-01 100 chrXIV:631750-632072 1.36e-03 30_[-1(4.30e-06)]_51 chrII:556841-557251 9.20e-01 100 chrXIII:305957-307168 6.15e-01 100 chrVII:324503-325005 3.92e-01 100 chrXII:263568-263676 3.58e-01 100 chrXIII:267993-268258 3.06e-01 100 chrVII:648031-648441 7.39e-01 100 chrVII:557680-557913 8.45e-02 100 chrXVI:502685-503317 7.20e-01 100 chrXII:348059-348450 4.56e-01 100 chrXVI:404215-404497 2.54e-01 100 chrVII:281747-282157 6.38e-01 100 chrXII:728185-728664 7.62e-01 100 chrVIII:556070-556480 9.87e-01 100 chrXIII:626499-626965 9.60e-01 100 chrXII:818492-818805 2.29e-07 17_[+1(1.69e-06)]_5_[+2(7.45e-08)]_\ 29 chrVIII:146102-146442 2.55e-12 30_[-2(2.68e-10)]_6_[-1(9.59e-10)]_\ 15 chrII:394160-394570 1.81e-02 8_[-2(4.44e-05)]_62 chrX:73438-73538 9.35e-01 100 chrXIV:568030-568236 8.96e-04 38_[+1(4.51e-07)]_43 chrXV:989038-989557 7.83e-02 100 chrXII:796450-796811 8.28e-04 52_[-3(2.60e-07)]_33 chrVII:545386-545785 8.22e-01 100 chrIII:227772-228227 6.09e-04 52_[+2(4.46e-07)]_18 chrII:702173-702463 3.99e-01 100 chrXV:678864-679160 7.47e-05 46_[-3(9.48e-08)]_39 chrXV:27312-27722 2.02e-01 100 chrV:79658-80068 9.72e-01 100 chrXVI:302727-302951 8.53e-03 38_[+3(1.46e-06)]_47 chrXII:628230-628654 2.15e-02 64_[+2(9.50e-06)]_6 chrX:291199-291299 8.36e-02 100 chrXI:552106-552516 8.39e-01 100 chrXV:836745-836878 3.83e-02 100 chrXV:81004-81207 4.05e-01 100 chrXII:781488-781835 8.33e-04 25_[-3(8.03e-05)]_3_[-3(1.57e-07)]_\ 42 chrIV:322977-323338 9.41e-01 100 chrIV:579688-579989 9.73e-01 100 chrIX:316914-317324 9.97e-01 100 chrVII:806224-806634 5.66e-01 100 chrVIII:386198-386608 1.21e-03 41_[-1(5.37e-05)]_3_[-2(9.97e-05)]_\ 7 chrIV:1434404-1434748 8.14e-01 100 chrXII:712388-712798 2.47e-01 100 chrXI:21397-21732 7.65e-02 100 chrIX:316169-316572 3.39e-02 30_[+3(2.06e-05)]_55 chrIV:1256911-1257257 1.15e-03 19_[-1(5.33e-07)]_62 chrXII:283245-283561 9.25e-01 100 chrVIII:382949-383291 4.46e-03 29_[-3(2.21e-06)]_2_[-3(4.41e-06)]_\ 39 chrIV:1402870-1403440 4.60e-01 100 chrI:28496-28974 7.39e-01 100 chrVII:727319-727506 9.10e-02 100 chrXI:558714-559030 1.06e-01 100 chrXVI:860227-860561 2.32e-11 41_[+1(1.98e-07)]_4_[+2(1.24e-11)]_\ 6 chrII:592925-593248 5.01e-04 30_[-3(7.55e-05)]_2_[-3(6.30e-08)]_\ 38 chrXV:353934-354267 6.02e-12 1_[-2(1.24e-10)]_6_[-1(4.86e-09)]_\ 44 chrX:120472-120572 3.16e-01 100 chrII:413939-414085 5.45e-02 100 chrVIII:56087-56339 8.85e-01 100 chrXVI:575161-575425 2.52e-02 55_[+3(1.29e-05)]_30 chrXV:384604-385096 7.05e-01 100 chrIX:386539-387050 2.77e-01 100 chrXI:614056-614466 6.43e-01 100 chrXVI:775664-775993 7.46e-01 100 chrXVI:114421-114825 8.48e-01 100 chrI:185691-186027 1.54e-01 100 chrVII:310533-310912 3.52e-02 12_[+3(7.75e-06)]_73 chrIV:1345191-1345792 7.22e-01 100 chrIV:385863-387291 8.42e-01 100 chrXI:146853-147354 9.68e-01 100 chrIV:1201585-1201930 3.25e-05 49_[+1(1.42e-08)]_32 chrIV:234219-234629 4.86e-01 100 chrVIII:150727-151137 9.66e-01 100 chrXV:113653-113956 4.64e-05 54_[+1(4.86e-09)]_27 chrVIII:381474-382161 6.00e-01 100 chrIX:317914-318324 8.41e-01 100 chrXV:710086-710342 3.14e-04 67_[+2(2.26e-07)]_3 chrXIV:426871-427224 1.06e-01 26_[+3(3.41e-05)]_59 chrVII:366059-366619 5.41e-01 100 chrVIII:74991-75341 8.13e-03 35_[+3(4.04e-06)]_50 chrXV:87762-88172 8.64e-01 100 chrV:42120-42509 1.72e-01 100 chrXV:31785-32059 9.41e-01 100 chrV:135289-135639 1.24e-12 21_[-2(1.70e-11)]_6_[-1(1.42e-08)]_\ 24 chrXV:92126-92536 6.76e-01 100 chrX:227706-227806 6.15e-01 100 chrXV:32467-32653 2.89e-01 100 chrIX:129793-130246 1.46e-01 100 chrXIV:96119-96480 7.71e-09 2_[-2(1.71e-09)]_5_[-1(2.56e-06)]_\ 44 chrV:152539-153310 4.72e-01 100 chrII:167963-168165 4.14e-02 19_[+3(5.13e-05)]_2_[+3(1.09e-05)]_\ 49 chrX:115844-115944 7.79e-01 100 chrXVI:821628-822348 8.04e-02 100 chrXIII:296810-297134 3.63e-04 42_[+3(1.18e-07)]_43 chrXI:326289-326802 5.36e-01 100 chrVII:882401-883018 5.84e-01 100 chrXIII:91836-92111 4.97e-01 100 chrXIII:163092-163502 1.10e-01 100 chrXVI:135438-135848 1.74e-02 31_[-3(4.04e-06)]_54 chrXV:796952-797349 4.71e-01 100 chrIV:980817-981182 9.71e-11 35_[-2(1.90e-08)]_15_[-1(1.16e-09)]_\ 1 chrXIV:234322-234504 1.88e-01 100 chrVI:101212-101563 6.38e-04 45_[+1(4.51e-07)]_36 chrXVI:581889-582265 1.10e-12 41_[+1(1.42e-08)]_6_[+2(1.70e-11)]_\ 4 chrIII:228513-229035 5.50e-01 100 chrXV:288046-288410 6.39e-08 20_[+1(1.14e-06)]_22_[+2(1.90e-08)]_\ 9 chrV:396239-396546 1.79e-04 35_[+3(1.18e-07)]_3_[+3(3.18e-05)]_\ 32 chrXV:514428-514770 8.71e-01 100 chrV:79458-79868 4.14e-02 18_[+1(9.02e-05)]_63 chrXII:656823-657144 2.58e-12 11_[-2(2.68e-10)]_6_[-1(9.59e-10)]_\ 34 chrXIV:415820-416230 1.19e-01 69_[-3(9.07e-05)]_16 chrIV:1305492-1305821 1.14e-10 30_[+1(1.16e-09)]_16_[+2(2.26e-08)]_\ 5 chrXII:636954-637319 4.46e-01 100 chrVII:1004071-1004418 3.39e-06 52_[+2(1.90e-08)]_18 chrXV:902962-903372 8.17e-01 100 chrVII:986698-987789 3.22e-01 100 chrXIV:415755-415886 2.05e-01 100 chrXI:163223-163633 4.96e-01 100 chrVII:738954-739332 5.77e-13 35_[+1(2.92e-09)]_7_[+2(1.70e-11)]_\ 9 chrXII:366088-366440 7.33e-02 68_[-2(8.52e-05)]_2 chrIV:568737-569151 4.21e-10 18_[+2(3.57e-11)]_28_[+1(3.19e-06)]_\ 5 chrXIII:119281-119478 8.95e-01 100 chrX:745021-745121 1.06e-01 100 chrXIII:259019-259390 9.71e-11 14_[-2(1.90e-08)]_15_[-1(1.16e-09)]_\ 22 chrVII:278311-278723 8.12e-01 100 chrXVI:406213-406533 1.32e-03 46_[+3(5.90e-07)]_1_[+3(4.80e-05)]_\ 23 chrIX:174927-175207 6.31e-12 20_[+1(4.86e-09)]_6_[+2(1.24e-10)]_\ 25 chrXI:614938-615057 1.35e-02 100 chrXII:36653-37050 9.25e-01 100 chrXVI:822595-823005 8.51e-02 100 chrIV:520823-521156 1.89e-10 39_[+1(3.02e-06)]_5_[+2(2.66e-11)]_\ 7 chrVII:254163-254546 2.74e-04 22_[+3(1.98e-06)]_4_[-3(1.90e-07)]_\ 44 chrXIII:759006-759278 3.74e-02 100 chrV:443109-443394 3.35e-13 11_[-2(1.70e-11)]_7_[-1(2.92e-09)]_\ 33 chrVII:317011-317405 6.06e-01 100 chrXIII:123141-123551 4.82e-01 100 chrXV:253849-254076 7.44e-03 33_[+3(6.66e-05)]_16_[-3(1.76e-05)]_\ 21 chrIV:835810-836123 7.45e-03 33_[+3(1.09e-05)]_52 chrIV:1150707-1151078 1.51e-09 10_[-2(8.26e-07)]_33_[-1(1.16e-09)]_\ 8 chrIV:579952-580192 8.00e-01 100 chrXVI:405040-405802 5.04e-01 100 chrXVI:678783-679432 9.68e-01 100 chrXI:108781-109047 1.11e-03 37_[+3(4.80e-05)]_3_[+3(1.18e-07)]_\ 30 chrXIV:62344-62754 2.56e-01 100 chrVIII:385447-385857 1.38e-01 100 chrIX:127842-127947 4.68e-01 100 chrIX:141758-142260 9.64e-01 100 chrVII:625193-625560 7.58e-01 100 chrVII:592368-592949 1.10e-03 2_[+3(2.76e-05)]_83 chrXII:645922-646283 7.82e-01 100 chrXI:158261-158566 5.66e-02 35_[+3(1.76e-05)]_6_[+3(7.55e-05)]_\ 29 chrX:204553-204653 6.89e-01 100 chrIX:388150-389108 6.79e-01 100 chrXV:391387-392047 1.98e-02 47_[+3(4.87e-06)]_38 chrXI:322394-323109 3.36e-01 100 chrII:45034-45324 5.04e-04 39_[+3(9.48e-08)]_3_[-3(3.67e-06)]_\ 28 chrXVI:98620-99030 9.02e-01 100 chrX:121883-121983 2.64e-01 100 chrXIV:759206-759815 5.01e-01 100 chrXVI:828925-829452 6.82e-03 81_[-3(1.19e-05)]_4 chrX:378210-378310 1.63e-04 47_[+1(2.40e-07)]_34 chrXII:931448-931858 3.53e-01 100 chrII:142029-142439 7.21e-01 100 chrVI:65018-65308 9.65e-04 52_[-3(1.37e-07)]_33 chrXIII:282840-283107 3.60e-01 100 chrXII:92385-92763 2.03e-04 30_[+1(4.51e-07)]_51 chrXVI:520190-520520 8.36e-03 57_[+3(2.22e-05)]_28 chrVII:766051-766550 7.24e-01 100 chrVIII:452503-452980 7.05e-01 100 chrIII:178340-178664 1.16e-02 18_[-3(3.67e-06)]_3_[+3(2.56e-05)]_\ 49 chrVII:609287-610135 9.43e-01 100 chrXV:892213-892623 8.94e-01 100 chrXV:571827-572111 1.14e-07 45_[+1(3.19e-06)]_5_[+2(1.60e-08)]_\ 1 chrXIV:374718-375086 3.36e-10 23_[+1(3.67e-08)]_24_[+2(2.61e-09)]_\ 4 chrXV:92951-93289 5.03e-05 14_[-3(5.38e-06)]_11_[-3(2.29e-07)]_\ 45 chrVII:788366-788699 2.15e-03 45_[-3(4.59e-07)]_40 chrXV:506323-506733 2.30e-01 100 chrXII:838678-838931 3.06e-01 100 chrXV:966560-966970 1.02e-01 100 chrX:541403-541503 2.56e-07 35_[+1(3.19e-06)]_5_[+2(1.60e-08)]_\ 11 chrVI:84031-84273 1.67e-01 100 chrXII:258115-258525 8.89e-02 100 chrVII:541701-542070 9.07e-08 45_[+2(7.72e-12)]_25 chrXI:517808-518133 7.94e-06 74_[+1(9.59e-10)]_7 chrVII:765106-765516 7.83e-02 100 chrXIV:25304-25714 5.75e-01 100 chrXII:1028274-1028547 1.50e-02 36_[+3(8.46e-06)]_49 chrXIII:372332-372601 4.28e-09 39_[-2(7.73e-09)]_7_[-1(2.40e-07)]_\ 5 chrIV:884217-884588 9.35e-06 15_[+1(2.48e-08)]_66 chrII:554732-554934 6.09e-01 100 chrX:542829-542929 6.39e-08 [-2(1.90e-08)]_22_[-1(1.14e-06)]_29 chrXV:110810-111154 7.71e-09 40_[-2(1.71e-09)]_5_[-1(2.56e-06)]_\ 6 chrVII:960285-960471 5.64e-01 100 chrXV:282007-282330 2.21e-04 52_[+1(1.98e-07)]_29 chrXI:143115-143401 9.52e-01 100 chrXVI:40166-40628 8.02e-01 100 chrII:555791-556136 8.15e-01 100 chrXIII:163822-164232 9.69e-01 100 chrIX:325708-326074 7.86e-01 100 chrV:354760-355238 2.63e-09 15_[+2(7.72e-12)]_33_[-3(4.19e-05)]_\ 7 chrIV:437636-437965 9.71e-11 28_[+1(1.16e-09)]_15_[+2(1.90e-08)]_\ 8 chrXII:721987-722397 2.75e-01 100 chrV:117981-118261 5.34e-01 100 chrVI:98896-99098 1.37e-02 40_[+2(8.80e-05)]_30 chrXV:903870-904705 3.82e-01 100 chrVII:534821-535177 1.62e-04 53_[-3(1.57e-07)]_32 chrII:306915-307325 8.28e-01 100 chrXII:1002248-1002720 8.56e-01 100 chrX:355209-355309 1.00e-07 29_[+2(3.57e-11)]_41 chrV:378310-378710 5.59e-02 28_[-2(6.60e-05)]_42 chrXVI:699971-700346 5.32e-02 59_[+3(9.63e-05)]_26 chrVIII:16891-18361 3.30e-01 100 chrXIII:286777-287187 9.88e-01 100 chrXI:618839-619169 6.22e-05 27_[+3(1.64e-05)]_13_[-3(7.53e-07)]_\ 30 chrII:135936-136356 8.83e-02 100 chrV:301648-302058 2.89e-01 100 chrXV:228158-228537 5.61e-10 40_[+1(2.17e-08)]_7_[+2(1.34e-08)]_\ 4 chrI:34001-34411 1.21e-01 100 chrIX:394505-395263 6.90e-01 100 chrIV:914306-914716 2.24e-01 100 chrXIV:577124-577534 3.29e-01 100 chrIV:1489085-1489577 9.13e-01 100 chrII:332362-332698 8.55e-03 43_[+3(4.41e-06)]_42 chrVII:807250-807660 8.59e-01 100 chrXI:259624-259976 9.62e-01 100 chrVII:930873-931170 9.44e-04 26_[-1(1.98e-07)]_55 chrXVI:819354-819704 4.96e-05 56_[+1(2.92e-09)]_25 chrVIII:126931-127341 3.51e-01 100 chrXIII:756352-756639 9.91e-01 100 chrX:422784-422884 1.66e-09 45_[+1(1.32e-07)]_6_[+2(2.89e-09)] chrXII:922131-922515 4.23e-03 44_[+3(6.66e-05)]_11_[+3(1.07e-06)]_\ 15 chrI:143312-143495 7.72e-01 100 chrVII:205362-206068 7.81e-01 100 chrII:169404-169814 4.80e-01 100 chrV:266139-266476 1.12e-01 100 chrXI:230867-231713 2.28e-01 100 chrXV:87977-88387 9.36e-01 100 chrVII:412160-412526 4.28e-09 11_[-2(7.73e-09)]_7_[-1(2.40e-07)]_\ 33 chrXII:949485-949891 6.71e-01 100 chrXII:199018-199748 2.81e-01 100 chrXV:234413-234721 8.02e-01 100 chrXIV:739244-739717 7.88e-01 100 chrXIV:88966-89750 9.95e-01 100 chrXIV:659652-660062 2.17e-01 100 chrII:140539-140654 4.75e-01 100 chrIV:217230-217474 1.08e-03 10_[+3(2.21e-06)]_75 chrXVI:689408-689824 7.36e-09 5_[+1(1.16e-09)]_15_[+2(1.38e-06)]_\ 31 chrII:681015-681718 5.39e-01 100 chrV:221440-221868 2.29e-01 100 chrIV:234418-234828 5.50e-01 100 chrXV:409408-409818 9.80e-01 100 chrXII:819343-819753 6.57e-01 100 chrXV:274498-274906 5.12e-06 27_[+1(1.16e-09)]_54 chrII:256879-257042 2.35e-01 100 chrIV:1359439-1359777 1.63e-03 36_[+3(1.90e-07)]_49 chrVII:401011-401421 4.44e-01 100 chrIV:392488-392898 1.63e-02 15_[-3(7.06e-06)]_70 chrX:607885-607985 2.20e-04 40_[+3(3.49e-07)]_3_[+3(2.76e-05)]_\ 27 chrIX:68838-69248 9.72e-01 100 chrVIII:50506-50929 9.97e-01 100 chrXI:551830-552240 9.66e-02 100 chrXIV:663701-664111 5.52e-01 100 chrXIV:63142-63475 2.99e-03 58_[-3(1.30e-06)]_27 chrIII:142027-142277 1.78e-01 100 chrV:140946-141515 3.96e-01 100 chrIV:1352285-1352672 1.52e-08 48_[-2(1.70e-11)]_22 chrVII:824649-825059 1.99e-01 100 chrIV:1273801-1274211 9.63e-01 100 chrIX:336265-336570 9.34e-03 27_[-1(3.19e-06)]_54 chrXI:109893-110034 3.36e-01 100 chrII:167021-167431 9.55e-01 100 chrII:592263-592673 6.38e-01 100 chrXV:976344-976609 1.66e-09 1_[+1(1.32e-07)]_6_[+2(2.89e-09)]_\ 44 chrII:165015-165948 9.28e-01 100 chrX:354097-354197 7.50e-04 30_[+1(1.14e-06)]_51 chrVII:365277-365580 5.67e-01 100 chrXIII:556953-557263 5.11e-01 100 chrII:697570-697832 9.12e-01 100 chrXII:253186-253550 9.21e-01 100 chrX:531660-531760 1.36e-01 15_[-2(6.39e-05)]_55 chrXVI:425267-425641 6.83e-01 100 chrVII:323391-324228 3.91e-01 100 chrXI:74438-74811 1.58e-05 56_[+1(2.17e-08)]_25 chrXIV:585616-586550 9.27e-01 100 chrXIV:771793-772516 3.84e-01 100 chrXIII:287453-287795 6.95e-01 100 chrXIII:408220-408839 8.55e-01 100 chrXV:966822-967232 9.12e-01 100 chrXIII:91141-91357 6.68e-01 100 chrXVI:377075-377485 6.86e-01 100 chrXII:639687-640097 8.30e-01 100 chrXV:980572-980882 1.28e-08 12_[+1(4.10e-06)]_38_[+2(4.78e-09)]_\ 1 chrIV:1080460-1080959 9.79e-01 100 chrXV:678033-678443 1.03e-01 100 chrXIII:168656-169057 3.53e-05 36_[+2(1.90e-08)]_34 chrVII:481169-481597 3.75e-02 70_[+3(2.38e-05)]_15 chrIV:358182-358391 1.42e-02 11_[-3(4.04e-06)]_74 chrXIII:226135-226545 1.28e-01 100 chrVII:599960-600370 9.22e-01 100 chrIV:1300964-1301288 3.81e-03 31_[+3(1.07e-06)]_1_[-3(4.80e-05)]_\ 38 chrXII:448365-448877 2.60e-01 100 chrXV:1027912-1028170 6.92e-01 100 chrXI:383619-384029 3.16e-01 100 chrV:469309-469619 3.99e-04 49_[+1(2.40e-07)]_32 chrV:424780-425275 8.86e-01 100 chrIV:488528-489069 8.78e-05 59_[-2(8.49e-09)]_11 chrVII:439686-439892 9.15e-01 100 chrXI:162287-162707 3.99e-07 50_[-2(3.57e-11)]_20 chrX:124889-124989 4.52e-01 100 chrXI:44850-45260 3.39e-01 100 chrIV:541208-541934 8.33e-01 100 chrXIV:764017-764301 1.07e-02 34_[-3(9.19e-06)]_51 chrVI:131243-131654 3.45e-01 100 chrXIII:540243-540978 1.95e-01 100 chrII:625457-625718 7.46e-01 100 chrXII:605186-605586 9.35e-06 70_[-1(2.48e-08)]_11 chrXI:364495-365277 9.37e-01 100 chrXII:638818-639009 1.52e-01 100 chrIV:1087015-1087360 3.86e-01 100 chrXIV:776655-777186 9.81e-01 100 chrXII:202208-202421 8.40e-01 100 chrX:121182-121282 1.64e-01 100 chrXV:342904-343314 9.85e-01 100 chrX:293867-293967 6.37e-02 20_[-3(2.76e-05)]_65 chrXV:968051-968427 2.87e-03 78_[-3(2.06e-05)]_7 chrVII:115333-115677 2.73e-06 39_[+1(1.70e-09)]_42 chrV:242852-242993 7.36e-01 100 chrX:348772-348872 3.57e-01 100 chrX:76031-76131 7.12e-01 100 chrXIV:24229-24639 2.95e-01 100 chrIX:138120-139259 6.94e-01 100 chrXVI:591092-591454 6.52e-01 100 chrXV:29094-29504 4.87e-01 100 chrV:269402-269505 4.26e-01 100 chrVII:727523-727933 8.82e-01 100 chrXII:369293-370382 2.80e-01 100 chrVII:401452-401622 1.99e-07 50_[-2(7.72e-12)]_20 chrXII:258951-259361 7.18e-01 100 chrII:595024-595279 5.45e-01 100 chrXV:312613-312830 8.02e-01 100 chrIII:177361-177602 2.02e-01 100 chrIV:44193-44603 1.73e-01 100 chrVII:856741-857034 2.46e-02 25_[-3(2.22e-05)]_60 chrIV:1175708-1176033 1.63e-09 15_[+1(1.32e-07)]_6_[+2(2.89e-09)]_\ 30 chrIV:1362277-1362666 7.73e-01 100 chrVI:162080-162380 4.32e-04 54_[+1(1.98e-07)]_27 chrV:492217-492608 1.49e-09 [-2(2.11e-09)]_6_[-1(4.91e-07)]_45 chrXII:710568-710926 2.94e-03 34_[+3(1.18e-06)]_51 chrX:414814-414914 6.58e-05 52_[+1(1.42e-08)]_29 chrI:68324-68614 2.29e-02 6_[+3(1.64e-05)]_79 chrVII:398757-399167 3.96e-01 100 chrII:393184-393594 7.05e-01 100 chrXV:28338-28748 5.48e-01 100 chrVII:110486-110817 2.77e-05 34_[-2(2.07e-08)]_36 chrXV:758979-759515 4.94e-01 100 chrIV:1492166-1492313 9.70e-01 100 chrXV:444707-445400 6.41e-01 100 chrI:142912-143207 6.70e-02 100 chrXII:424042-424492 8.43e-01 100 chrII:642904-643244 7.44e-01 100 chrXI:578789-579204 4.67e-06 25_[+1(1.70e-09)]_56 chrIV:130587-130933 1.06e-03 37_[-3(7.53e-07)]_48 chrVIII:175054-175557 5.58e-01 100 chrXI:381841-382121 5.10e-01 100 chrII:167240-167650 7.39e-01 100 chrVIII:35208-35892 2.71e-01 100 chrXIII:661576-661986 8.64e-01 100 chrXII:459528-460120 5.15e-01 100 chrXI:7775-8244 2.49e-01 100 chrVIII:121363-121576 6.35e-02 100 chrII:624894-625192 1.25e-01 100 chrIX:427057-427892 7.19e-01 100 chrXI:141810-142220 8.15e-01 100 chrIV:580115-580401 1.36e-01 100 chrXVI:731952-732275 6.73e-04 39_[+3(5.90e-07)]_46 chrXIV:494551-494961 6.09e-01 100 chrXV:912112-912522 4.21e-01 100 chrII:394991-395401 9.69e-01 100 chrXIV:62140-62550 2.78e-01 100 chrIX:332643-333281 5.19e-01 100 chrVIII:103950-104202 2.12e-01 100 chrII:373157-373434 3.50e-02 100 chrX:415840-415940 1.70e-01 100 chrVIII:105172-105582 8.32e-01 100 chrXII:234613-234920 6.02e-01 100 chrXII:242978-243388 1.05e-01 100 chrXI:68750-69160 1.81e-01 100 chrII:378858-379146 4.00e-01 100 chrII:256642-256803 8.36e-01 100 chrXIII:732063-732382 1.35e-03 32_[+3(2.98e-07)]_53 chrXV:778896-779306 9.83e-01 100 chrXII:370411-371169 2.08e-01 100 chrI:69989-70198 9.60e-01 100 chrXV:638874-639458 8.41e-01 100 chrI:72552-72748 6.31e-01 100 chrXII:201925-202124 1.87e-01 100 chrV:176940-177382 1.50e-07 18_[+2(7.72e-12)]_52 chrXII:368122-368532 6.52e-01 100 chrVII:185606-185922 1.24e-12 10_[-2(1.70e-11)]_6_[-1(1.42e-08)]_\ 35 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************