Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.028956 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.055753 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.072857 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.01159 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background Finished invoke: name: bg status: 0 time: 0.01751 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 557.008837 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 65.336399 Invoking: centrimo -seqlen 340 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.219098 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.479639 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary KGKTADSGCGYCHSVCTNNYAABSDGRAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.393607 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary GGRATCGAACCSVBG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.405201 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary GSBYBHRTGGYBTAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.527978 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary AGTGGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.288644 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary ACCCADAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.246112 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary AACTKGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.279305 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary ATCCGTRC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.208051 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary AARAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.528243 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.252729 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary CRCACGCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.247095 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary GYGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.232401 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary GATTAASA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.216779 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary GGAGACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.210997 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.25992 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary TGGCGCW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.256392 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary TCGGYCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.244977 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary ATCTTYTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 0.24264 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_18 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary CTAWATC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo18 status: 0 time: 0.240258 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_19 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary GACAASC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo19 status: 0 time: 0.214408 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_20 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary CGATCTKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo20 status: 0 time: 0.209869 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/spamo_out_21 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background -primary CGCGGGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml Finished invoke: name: spamo21 status: 0 time: 0.22857 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif KGKTADSGCGYCHSVCTNNYAABSDGRAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo1 status: 0 time: 0.209924 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif GGRATCGAACCSVBG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo2 status: 0 time: 0.16583 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif GSBYBHRTGGYBTAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo3 status: 0 time: 0.187075 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif AGTGGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo4 status: 0 time: 0.131892 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif ACCCADAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo5 status: 0 time: 0.120701 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif AACTKGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo6 status: 0 time: 0.105553 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif ATCCGTRC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo7 status: 0 time: 0.124842 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif AARAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo8 status: 0 time: 0.079778 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo9 status: 0 time: 0.106386 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif CRCACGCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo10 status: 0 time: 0.090861 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif GYGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo11 status: 0 time: 0.09571 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif GATTAASA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo12 status: 0 time: 0.095523 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif GGAGACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo13 status: 0 time: 0.10185 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo14 status: 0 time: 0.100988 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif TGGCGCW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo15 status: 0 time: 0.116241 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif TCGGYCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo16 status: 0 time: 0.111601 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif ATCTTYTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo17 status: 0 time: 0.135969 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_18 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif CTAWATC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo18 status: 0 time: 0.113788 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_19 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif GACAASC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo19 status: 0 time: 0.111162 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_20 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif CGATCTKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo20 status: 0 time: 0.11164 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/fimo_out_21 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/background --motif CGCGGGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/RM11-1A--SMP1.fa Finished invoke: name: fimo21 status: 0 time: 0.121204 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SMP1/summary.tsv Finished invoke: name: summary status: 0 time: 0.251285 Done