******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SFL1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrVII:968790-969151 1.0000 100 chrV:42194-42437 1.0000 100 chrXII:253737-254213 1.0000 100 chrXV:407627-407942 1.0000 100 chrXIII:226101-226577 1.0000 100 chrI:141544-142009 1.0000 100 chrXI:74470-74776 1.0000 100 chrVII:736316-736792 1.0000 100 chrIV:357309-357785 1.0000 100 chrXII:818494-818768 1.0000 100 chrII:478891-479322 1.0000 100 chrX:197224-197324 1.0000 100 chrII:36257-36564 1.0000 100 chrXIV:89051-89740 1.0000 100 chrXVI:282743-283219 1.0000 100 chrII:226954-227277 1.0000 100 chrXII:263705-263888 1.0000 100 chrVI:137357-137677 1.0000 100 chrXIV:417741-418217 1.0000 100 chrV:221503-221813 1.0000 100 chrIV:309615-309824 1.0000 100 chrV:85695-86788 1.0000 100 chrIV:599734-600238 1.0000 100 chrV:266220-266470 1.0000 100 chrVIII:34406-36059 1.0000 100 chrV:174756-175005 1.0000 100 chrVII:479221-483005 1.0000 100 chrXII:819334-819810 1.0000 100 chrXIII:297026-298846 1.0000 100 chrIII:30667-31143 1.0000 100 chrXII:283231-283902 1.0000 100 chrIV:1402972-1403340 1.0000 100 chrXV:977943-978419 1.0000 100 chrXII:97523-97884 1.0000 100 chrIX:98280-98756 1.0000 100 chrXV:594237-594582 1.0000 100 chrVII:366157-366577 1.0000 100 chrIX:370264-370563 1.0000 100 chrXV:977730-978206 1.0000 100 chrXV:980584-980867 1.0000 100 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chrIV:117938-118090 1.0000 100 chrXV:605394-605870 1.0000 100 chrII:168769-169095 1.0000 100 chrXVI:769135-769475 1.0000 100 chrXIII:19808-20284 1.0000 100 chrXIV:722504-722980 1.0000 100 chrIV:437650-437937 1.0000 100 chrVIII:531477-531769 1.0000 100 chrIV:929578-930054 1.0000 100 chrIX:388586-388960 1.0000 100 chrXVI:404873-405795 1.0000 100 chrIII:142610-142935 1.0000 100 chrIV:1302013-1302489 1.0000 100 chrV:461758-462234 1.0000 100 chrVI:131280-131620 1.0000 100 chrXV:391553-391966 1.0000 100 chrXV:623897-624373 1.0000 100 chrV:81510-81986 1.0000 100 chrV:283611-284087 1.0000 100 chrXIII:253353-253574 1.0000 100 chrXVI:532063-532539 1.0000 100 chrXIV:392350-392735 1.0000 100 chrXVI:745571-746047 1.0000 100 chrXV:1027899-1028427 1.0000 100 chrX:227686-227786 1.0000 100 chrV:131015-131284 1.0000 100 chrXV:282012-282326 1.0000 100 chrVII:989745-990404 1.0000 100 chrXII:814615-815091 1.0000 100 chrVI:31002-31534 1.0000 100 chrIX:317891-318367 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SFL1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SFL1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SFL1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 546 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 54600 N= 546 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.298 C 0.202 G 0.202 T 0.298 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--SFL1/background): A 0.305 C 0.195 G 0.195 T 0.305 ******************************************************************************** ******************************************************************************** MOTIF YKTGGCCBAGTKGKWWRRGSS MEME-1 width = 21 sites = 99 llr = 1464 E-value = 5.1e-245 ******************************************************************************** -------------------------------------------------------------------------------- Motif YKTGGCCBAGTKGKWWRRGSS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 12:2:::1a2::::3565::: pos.-specific C 4::::864::12::1:11255 probability G 24:8a:22:8:5a51134744 matrix T 34a::233::93:554:1111 bits 2.4 * * 2.1 * * 1.9 * * 1.7 *** ** * Relative 1.4 **** *** * Entropy 1.2 **** *** * * (21.3 bits) 0.9 **** *** * * * 0.7 ***** ****** * *** 0.5 ****** ****** * *** 0.2 ********************* 0.0 --------------------- Multilevel CTTGGCCCAGTGGGTAAAGCC consensus TG TTT T TATGG GG sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YKTGGCCBAGTKGKWWRRGSS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIV:437650-437937 + 34 1.54e-11 AGTAAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:980853-981192 - 58 1.54e-11 ATTGAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:167873-168175 - 26 1.54e-11 CATATGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrX:523921-524021 - 34 1.54e-11 TTAAAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:1305514-1305789 + 34 1.54e-11 ATTAAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrII:226954-227277 + 15 1.54e-11 AACGAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXVI:819343-819755 + 35 7.57e-11 AGAATGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXVI:880166-880546 - 38 7.57e-11 ATAATGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXII:734664-734945 + 53 7.57e-11 AGTTTGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrII:197363-197628 + 54 7.57e-11 ATCAAGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXII:731961-732270 + 30 2.90e-10 ACAATGGGAG TTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXII:592447-592735 - 53 2.90e-10 ACAATGGGAG TTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXII:784205-784526 + 44 4.33e-10 CAACCGTCCC AGTGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrIV:1150746-1151075 - 56 4.33e-10 TTTCAGTCCC AGTGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrIX:248691-249029 + 45 5.27e-10 TTTTAGGCAC TATGGCCGAGTGGTTAAGGCG ACAGACTTGA chrIII:227806-228179 + 5 5.27e-10 GCAC TATGGCCGAGTGGTTAAGGCG AGAGACTCGA chrX:424386-424486 - 5 1.85e-09 AAGATGGAGG GTTGGCCGAGTGGTCTAAGGC GGCA chrIV:519644-519840 + 56 1.85e-09 TTTACGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrII:9442-9678 + 78 1.85e-09 TTCGTGGAGG GTTGGCCGAGTGGTCTAAGGC GG chrXII:962927-963188 - 23 1.85e-09 TCGACGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXVI:810569-810809 + 42 4.80e-09 TTTGCGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXV:228186-228489 + 49 4.80e-09 TATTAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXIV:102577-102885 + 40 4.80e-09 TATAAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXII:975895-976191 - 38 4.80e-09 TAAAAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrVII:731019-731306 + 30 4.80e-09 AAAAAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrVI:137357-137677 - 67 4.80e-09 TGACTGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXI:74470-74776 + 56 4.80e-09 AATTAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXII:374200-374539 + 41 5.58e-09 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrV:492231-492608 - 30 5.58e-09 TCCTATTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrX:233791-233891 + 46 5.58e-09 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrXV:340220-340513 - 30 5.58e-09 ATCTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrXV:353939-354250 - 44 6.46e-09 TTACTGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrIII:295320-295612 + 73 6.46e-09 ATTAAGCTTC TATGGCCAAGTTGGTAAGGCG CCACACT chrVIII:116003-116318 - 44 6.46e-09 TTAGAGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXV:113657-113942 + 58 6.46e-09 ATTTAGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXIV:104683-104994 + 22 6.46e-09 TCTCAGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrI:166153-166458 + 17 7.47e-09 GAGTTGGGCA CATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrXII:656808-657094 - 80 1.30e-08 . TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrVII:774192-774514 + 51 1.30e-08 TAATTGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXVI:769135-769475 - 22 3.17e-08 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrV:469325-469611 + 44 3.17e-08 TAATTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:823314-823673 + 44 3.17e-08 AGAGTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:308040-308377 - 34 3.17e-08 TAAGTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXV:438500-438848 + 24 3.17e-08 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrVII:412175-412507 - 51 3.17e-08 AAACTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrIV:359441-359760 + 32 3.17e-08 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrV:438580-438833 + 49 3.17e-08 AATTAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXII:875231-875577 + 27 3.17e-08 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrX:378216-378316 + 66 3.17e-08 TAATAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:372358-372613 - 58 3.17e-08 AACCTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:205360-205733 + 30 3.57e-08 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrXII:628230-628610 + 18 3.57e-08 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:857303-857609 - 60 3.57e-08 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:422955-423289 + 25 3.57e-08 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrXIII:480493-480846 - 49 7.08e-08 AAGTAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVI:226578-226910 - 41 7.08e-08 AAAATGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrIV:884197-884576 + 30 7.08e-08 AAAATGCTCG TGTAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrVII:185613-185908 - 51 7.08e-08 AAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrV:435658-435963 - 39 7.08e-08 TAAGAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrIV:1201620-1201934 + 28 7.08e-08 AAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrX:414848-414948 + 37 7.08e-08 AATTAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:122123-122433 + 46 7.08e-08 AATTAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrXIV:374726-375056 + 33 1.08e-07 AATAAGCGGA CTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVII:440547-440995 - 61 2.16e-07 TATATGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:237747-238048 - 67 2.16e-07 AGTAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXIII:352156-352440 + 37 2.16e-07 TATAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrII:36257-36564 + 43 2.16e-07 TGTAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrX:517817-517917 - 12 2.84e-07 AGTTAAGCGC CGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrXVI:338774-339079 - 18 2.84e-07 TTAGCAGCGC CGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrV:100000-100318 + 29 2.84e-07 GGCTAAGCGC CGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrXII:92429-92707 + 35 4.77e-07 AATAAGGGCG TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrVI:101247-101535 + 40 4.77e-07 AATTCGGGCG TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXIII:195984-196279 - 64 4.77e-07 CACAAGGGCG TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXIV:567892-568368 + 40 4.77e-07 TAATCGGGCG TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXV:282012-282326 + 50 5.18e-07 AAAGCGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrIII:142610-142935 - 24 5.18e-07 TACTAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVI:162089-162376 + 51 5.18e-07 AACAAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:930872-931168 - 28 5.18e-07 AGTAAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrIV:992714-992969 + 46 5.18e-07 TGTGAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrX:422820-422920 + 36 9.64e-07 TGTATGCTTC AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrXI:46674-46940 - 24 9.64e-07 ACTCAGCCCT TTTGGCCAAGTGGTAAGGCAT CGCACTCGTA chrXV:976329-976620 + 2 9.64e-07 C AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrVII:1004108-1004380 + 27 1.12e-06 GGTTTGCCTC CTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrVIII:466864-467117 + 55 1.12e-06 TTTTAGCCTC CTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrXVI:744143-744485 + 25 1.12e-06 TAAAAGCCTC CTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrX:538420-538520 + 50 1.28e-06 AGTTGGTTCC GTTGGCGTAATGGTAACGCGT CTCCCTCCTA chrII:642925-643209 - 36 1.47e-06 AGAAAGCTCG TATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrXVI:435792-436121 - 33 1.47e-06 CAAAAGCTCG TATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrXIII:379236-379546 - 42 2.18e-06 AAGTTGAAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrX:415881-415981 - 35 2.18e-06 AAGTTGAAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrVII:878568-878956 - 78 2.18e-06 GC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrXV:980584-980867 + 13 2.47e-06 TGTATGGGCG TGTGGTCTAGTGGAATGATTC TCGCTTTGGG chrVII:828556-828958 - 62 2.62e-06 CAGTAGCTCG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrVII:736178-736541 + 36 2.62e-06 CAATAGCTCG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrX:374427-374527 - 23 2.62e-06 TAGTAGCTCG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrII:326640-327022 - 59 2.95e-06 TTCCGGGTCC AATGGTCCAGTGGTTCAAGAC GTCGCCTTTA chrXVI:407323-407544 - 60 4.84e-06 ACGGGATTCT CTTGGTTGAGCTGGTTGTCTC TTCAATTGGA chrII:606903-607139 - 73 4.84e-06 GGATTCT CTTGGTTGAGCTGGTTGTCTC TTCAATTGGA chrXIV:631778-632022 - 42 6.82e-06 CTACCGGGCG TGTGGTCTAGAGGTATGATTC TCGCTTAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YKTGGCCBAGTKGKWWRRGSS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:437650-437937 1.5e-11 33_[+1]_46 chrIV:980853-981192 1.5e-11 57_[-1]_22 chrXII:167873-168175 1.5e-11 25_[-1]_54 chrX:523921-524021 1.5e-11 33_[-1]_46 chrIV:1305514-1305789 1.5e-11 33_[+1]_46 chrII:226954-227277 1.5e-11 14_[+1]_65 chrXVI:819343-819755 7.6e-11 34_[+1]_45 chrXVI:880166-880546 7.6e-11 37_[-1]_42 chrXII:734664-734945 7.6e-11 52_[+1]_27 chrII:197363-197628 7.6e-11 53_[+1]_26 chrXII:731961-732270 2.9e-10 29_[+1]_50 chrXII:592447-592735 2.9e-10 52_[-1]_27 chrXII:784205-784526 4.3e-10 43_[+1]_36 chrIV:1150746-1151075 4.3e-10 55_[-1]_24 chrIX:248691-249029 5.3e-10 44_[+1]_35 chrIII:227806-228179 5.3e-10 4_[+1]_75 chrX:424386-424486 1.9e-09 4_[-1]_75 chrIV:519644-519840 1.9e-09 55_[+1]_24 chrII:9442-9678 1.9e-09 77_[+1]_2 chrXII:962927-963188 1.9e-09 22_[-1]_57 chrXVI:810569-810809 4.8e-09 41_[+1]_38 chrXV:228186-228489 4.8e-09 48_[+1]_31 chrXIV:102577-102885 4.8e-09 39_[+1]_40 chrXII:975895-976191 4.8e-09 37_[-1]_42 chrVII:731019-731306 4.8e-09 29_[+1]_50 chrVI:137357-137677 4.8e-09 66_[-1]_13 chrXI:74470-74776 4.8e-09 55_[+1]_24 chrXII:374200-374539 5.6e-09 40_[+1]_39 chrV:492231-492608 5.6e-09 29_[-1]_50 chrX:233791-233891 5.6e-09 45_[+1]_34 chrXV:340220-340513 5.6e-09 29_[-1]_50 chrXV:353939-354250 6.5e-09 43_[-1]_36 chrIII:295320-295612 6.5e-09 72_[+1]_7 chrVIII:116003-116318 6.5e-09 43_[-1]_36 chrXV:113657-113942 6.5e-09 57_[+1]_22 chrXIV:104683-104994 6.5e-09 21_[+1]_58 chrI:166153-166458 7.5e-09 16_[+1]_63 chrXII:656808-657094 1.3e-08 79_[-1] chrVII:774192-774514 1.3e-08 50_[+1]_29 chrXVI:769135-769475 3.2e-08 21_[-1]_58 chrV:469325-469611 3.2e-08 43_[+1]_36 chrVII:823314-823673 3.2e-08 43_[+1]_36 chrXI:308040-308377 3.2e-08 33_[-1]_46 chrXV:438500-438848 3.2e-08 23_[+1]_56 chrVII:412175-412507 3.2e-08 50_[-1]_29 chrIV:359441-359760 3.2e-08 31_[+1]_48 chrV:438580-438833 3.2e-08 48_[+1]_31 chrXII:875231-875577 3.2e-08 26_[+1]_53 chrX:378216-378316 3.2e-08 65_[+1]_14 chrXIII:372358-372613 3.2e-08 57_[-1]_22 chrVII:205360-205733 3.6e-08 29_[+1]_50 chrXII:628230-628610 3.6e-08 17_[+1]_62 chrVII:857303-857609 3.6e-08 59_[-1]_20 chrVII:422955-423289 3.6e-08 24_[+1]_55 chrXIII:480493-480846 7.1e-08 48_[-1]_31 chrVI:226578-226910 7.1e-08 40_[-1]_39 chrIV:884197-884576 7.1e-08 29_[+1]_50 chrVII:185613-185908 7.1e-08 50_[-1]_29 chrV:435658-435963 7.1e-08 38_[-1]_41 chrIV:1201620-1201934 7.1e-08 27_[+1]_52 chrX:414848-414948 7.1e-08 36_[+1]_43 chrVII:122123-122433 7.1e-08 45_[+1]_34 chrXIV:374726-375056 1.1e-07 32_[+1]_47 chrVII:440547-440995 2.2e-07 60_[-1]_19 chrVIII:237747-238048 2.2e-07 66_[-1]_13 chrXIII:352156-352440 2.2e-07 36_[+1]_43 chrII:36257-36564 2.2e-07 42_[+1]_37 chrX:517817-517917 2.8e-07 11_[-1]_68 chrXVI:338774-339079 2.8e-07 17_[-1]_62 chrV:100000-100318 2.8e-07 28_[+1]_51 chrXII:92429-92707 4.8e-07 34_[+1]_45 chrVI:101247-101535 4.8e-07 39_[+1]_40 chrXIII:195984-196279 4.8e-07 63_[-1]_16 chrXIV:567892-568368 4.8e-07 39_[+1]_40 chrXV:282012-282326 5.2e-07 49_[+1]_30 chrIII:142610-142935 5.2e-07 23_[-1]_56 chrVI:162089-162376 5.2e-07 50_[+1]_29 chrVII:930872-931168 5.2e-07 27_[-1]_52 chrIV:992714-992969 5.2e-07 45_[+1]_34 chrX:422820-422920 9.6e-07 35_[+1]_44 chrXI:46674-46940 9.6e-07 23_[-1]_56 chrXV:976329-976620 9.6e-07 1_[+1]_78 chrVII:1004108-1004380 1.1e-06 26_[+1]_53 chrVIII:466864-467117 1.1e-06 54_[+1]_25 chrXVI:744143-744485 1.1e-06 24_[+1]_55 chrX:538420-538520 1.3e-06 49_[+1]_30 chrII:642925-643209 1.5e-06 35_[-1]_44 chrXVI:435792-436121 1.5e-06 32_[-1]_47 chrXIII:379236-379546 2.2e-06 41_[-1]_38 chrX:415881-415981 2.2e-06 34_[-1]_45 chrVII:878568-878956 2.2e-06 77_[-1]_2 chrXV:980584-980867 2.5e-06 12_[+1]_67 chrVII:828556-828958 2.6e-06 61_[-1]_18 chrVII:736178-736541 2.6e-06 35_[+1]_44 chrX:374427-374527 2.6e-06 22_[-1]_57 chrII:326640-327022 2.9e-06 58_[-1]_21 chrXVI:407323-407544 4.8e-06 59_[-1]_20 chrII:606903-607139 4.8e-06 72_[-1]_7 chrXIV:631778-632022 6.8e-06 41_[-1]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YKTGGCCBAGTKGKWWRRGSS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YKTGGCCBAGTKGKWWRRGSS width=21 seqs=99 chrIV:437650-437937 ( 34) CTTGGCCGAGTGGTTAAGGCG 1 chrIV:980853-981192 ( 58) CTTGGCCGAGTGGTTAAGGCG 1 chrXII:167873-168175 ( 26) CTTGGCCGAGTGGTTAAGGCG 1 chrX:523921-524021 ( 34) CTTGGCCGAGTGGTTAAGGCG 1 chrIV:1305514-1305789 ( 34) CTTGGCCGAGTGGTTAAGGCG 1 chrII:226954-227277 ( 15) CTTGGCCGAGTGGTTAAGGCG 1 chrXVI:819343-819755 ( 35) CTTGGCCCAGTTGGTTAAGGC 1 chrXVI:880166-880546 ( 38) CTTGGCCCAGTTGGTTAAGGC 1 chrXII:734664-734945 ( 53) CTTGGCCCAGTTGGTTAAGGC 1 chrII:197363-197628 ( 54) CTTGGCCCAGTTGGTTAAGGC 1 chrXII:731961-732270 ( 30) TTTGGCCGAGTGGTTTAAGGC 1 chrXII:592447-592735 ( 53) TTTGGCCGAGTGGTTTAAGGC 1 chrXII:784205-784526 ( 44) AGTGGCCGAGTGGTTAAGGCG 1 chrIV:1150746-1151075 ( 56) AGTGGCCGAGTGGTTAAGGCG 1 chrIX:248691-249029 ( 45) TATGGCCGAGTGGTTAAGGCG 1 chrIII:227806-228179 ( 5) TATGGCCGAGTGGTTAAGGCG 1 chrX:424386-424486 ( 5) GTTGGCCGAGTGGTCTAAGGC 1 chrIV:519644-519840 ( 56) GTTGGCCGAGTGGTCTAAGGC 1 chrII:9442-9678 ( 78) GTTGGCCGAGTGGTCTAAGGC 1 chrXII:962927-963188 ( 23) GTTGGCCGAGTGGTCTAAGGC 1 chrXVI:810569-810809 ( 42) CATGGCCAAGTTGGTTAAGGC 1 chrXV:228186-228489 ( 49) CATGGCCAAGTTGGTTAAGGC 1 chrXIV:102577-102885 ( 40) CATGGCCAAGTTGGTTAAGGC 1 chrXII:975895-976191 ( 38) CATGGCCAAGTTGGTTAAGGC 1 chrVII:731019-731306 ( 30) CATGGCCAAGTTGGTTAAGGC 1 chrVI:137357-137677 ( 67) CATGGCCAAGTTGGTTAAGGC 1 chrXI:74470-74776 ( 56) CATGGCCAAGTTGGTTAAGGC 1 chrXII:374200-374539 ( 41) CGTGGCCCAATGGTCACGGCG 1 chrV:492231-492608 ( 30) CGTGGCCCAATGGTCACGGCG 1 chrX:233791-233891 ( 46) CGTGGCCCAATGGTCACGGCG 1 chrXV:340220-340513 ( 30) CGTGGCCCAATGGTCACGGCG 1 chrXV:353939-354250 ( 44) TATGGCCAAGTTGGTAAGGCG 1 chrIII:295320-295612 ( 73) TATGGCCAAGTTGGTAAGGCG 1 chrVIII:116003-116318 ( 44) TATGGCCAAGTTGGTAAGGCG 1 chrXV:113657-113942 ( 58) TATGGCCAAGTTGGTAAGGCG 1 chrXIV:104683-104994 ( 22) TATGGCCAAGTTGGTAAGGCG 1 chrI:166153-166458 ( 17) CATGGCGCAGTTGGTAGCGCG 1 chrXII:656808-657094 ( 80) TGTGGCGTAGTCGGTAGCGCG 1 chrVII:774192-774514 ( 51) TGTGGCGTAGTCGGTAGCGCG 1 chrXVI:769135-769475 ( 22) GTTAGCTCAGTTGGTAGAGCG 1 chrV:469325-469611 ( 44) CGTGGTCTAGTCGGTTATGGC 1 chrVII:823314-823673 ( 44) CGTGGTCTAGTCGGTTATGGC 1 chrXI:308040-308377 ( 34) CGTGGTCTAGTCGGTTATGGC 1 chrXV:438500-438848 ( 24) GTTAGCTCAGTTGGTAGAGCG 1 chrVII:412175-412507 ( 51) CGTGGTCTAGTCGGTTATGGC 1 chrIV:359441-359760 ( 32) GTTAGCTCAGTTGGTAGAGCG 1 chrV:438580-438833 ( 49) CGTGGTCTAGTCGGTTATGGC 1 chrXII:875231-875577 ( 27) GTTAGCTCAGTTGGTAGAGCG 1 chrX:378216-378316 ( 66) CGTGGTCTAGTCGGTTATGGC 1 chrXIII:372358-372613 ( 58) CGTGGTCTAGTCGGTTATGGC 1 chrVII:205360-205733 ( 30) TTTGGCCGAGCGGTCTAAGGC 1 chrXII:628230-628610 ( 18) TTTGGCCGAGCGGTCTAAGGC 1 chrVII:857303-857609 ( 60) TTTGGCCGAGCGGTCTAAGGC 1 chrVII:422955-423289 ( 25) TTTGGCCGAGCGGTCTAAGGC 1 chrXIII:480493-480846 ( 49) GTTGGCGCAATCGGTAGCGCG 1 chrVI:226578-226910 ( 41) GTTGGCGCAATCGGTAGCGCG 1 chrIV:884197-884576 ( 30) TGTAGCTCAGTGGTTAGAGCT 1 chrVII:185613-185908 ( 51) GTTGGCGCAATCGGTAGCGCG 1 chrV:435658-435963 ( 39) GTTGGCGCAATCGGTAGCGCG 1 chrIV:1201620-1201934 ( 28) GTTGGCGCAATCGGTAGCGCG 1 chrX:414848-414948 ( 37) GTTGGCGCAATCGGTAGCGCG 1 chrVII:122123-122433 ( 46) GTTGGCGCAATCGGTAGCGCG 1 chrXIV:374726-375056 ( 33) CTTAGCTCAGTTGGGAGAGCG 1 chrVII:440547-440995 ( 61) TTTAGCTCAGTTGGGAGAGCG 1 chrVIII:237747-238048 ( 67) TTTAGCTCAGTTGGGAGAGCG 1 chrXIII:352156-352440 ( 37) TTTAGCTCAGTTGGGAGAGCG 1 chrII:36257-36564 ( 43) TTTAGCTCAGTTGGGAGAGCG 1 chrX:517817-517917 ( 12) CGTGGCGCAGTGGAAGCGCGC 1 chrXVI:338774-339079 ( 18) CGTGGCGCAGTGGAAGCGCGC 1 chrV:100000-100318 ( 29) CGTGGCGCAGTGGAAGCGCGC 1 chrXII:92429-92707 ( 35) TGTGGTCTAGTGGTATGATTC 1 chrVI:101247-101535 ( 40) TGTGGTCTAGTGGTATGATTC 1 chrXIII:195984-196279 ( 64) TGTGGTCTAGTGGTATGATTC 1 chrXIV:567892-568368 ( 40) TGTGGTCTAGTGGTATGATTC 1 chrXV:282012-282326 ( 50) AGTGGTTTAGTGGTAAAATCC 1 chrIII:142610-142935 ( 24) AGTGGTTTAGTGGTAAAATCC 1 chrVI:162089-162376 ( 51) AGTGGTTTAGTGGTAAAATCC 1 chrVII:930872-931168 ( 28) AGTGGTTTAGTGGTAAAATCC 1 chrIV:992714-992969 ( 46) AGTGGTTTAGTGGTAAAATCC 1 chrX:422820-422920 ( 36) AGTAGCTCAGTAGGAAGAGCG 1 chrXI:46674-46940 ( 24) TTTGGCCAAGTGGTAAGGCAT 1 chrXV:976329-976620 ( 2) AGTAGCTCAGTAGGAAGAGCG 1 chrVII:1004108-1004380 ( 27) CTTAGCTTAGTGGTAGAGCGT 1 chrVIII:466864-467117 ( 55) CTTAGCTTAGTGGTAGAGCGT 1 chrXVI:744143-744485 ( 25) CTTAGCTTAGTGGTAGAGCGT 1 chrX:538420-538520 ( 50) GTTGGCGTAATGGTAACGCGT 1 chrII:642925-643209 ( 36) TATGGCGCAGTGGTAGCGCAG 1 chrXVI:435792-436121 ( 33) TATGGCGCAGTGGTAGCGCAG 1 chrXIII:379236-379546 ( 42) GGTGGCTCAATGGTAGAGCTT 1 chrX:415881-415981 ( 35) GGTGGCTCAATGGTAGAGCTT 1 chrVII:878568-878956 ( 78) GGTGGCTCAATGGTAGAGCTT 1 chrXV:980584-980867 ( 13) TGTGGTCTAGTGGAATGATTC 1 chrVII:828556-828958 ( 62) CGTGGCGTAATGGCAACGCGT 1 chrVII:736178-736541 ( 36) CGTGGCGTAATGGCAACGCGT 1 chrX:374427-374527 ( 23) CGTGGCGTAATGGCAACGCGT 1 chrII:326640-327022 ( 59) AATGGTCCAGTGGTTCAAGAC 1 chrXVI:407323-407544 ( 60) CTTGGTTGAGCTGGTTGTCTC 1 chrII:606903-607139 ( 73) CTTGGTTGAGCTGGTTGTCTC 1 chrXIV:631778-632022 ( 42) TGTGGTCTAGAGGTATGATTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YKTGGCCBAGTKGKWWRRGSS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 43680 bayes= 9.90856 E= 5.1e-245 -159 109 -2 -6 -75 -1327 98 51 -1327 -1327 -1327 171 -101 -1327 212 -1327 -1327 -1327 236 -1327 -1327 201 -1327 -52 -1327 151 -2 -27 -122 94 19 -16 171 -1327 -1327 -1327 -75 -1327 207 -1327 -491 -169 -1327 161 -391 -27 146 -11 -1327 -1327 236 -1327 -291 -269 125 61 -6 -69 -195 81 76 -427 -81 25 87 -57 68 -1327 58 -95 86 -175 -1327 -10 186 -146 -291 125 98 -146 -1327 122 112 -133 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YKTGGCCBAGTKGKWWRRGSS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 99 E= 5.1e-245 0.101010 0.414141 0.191919 0.292929 0.181818 0.000000 0.383838 0.434343 0.000000 0.000000 0.000000 1.000000 0.151515 0.000000 0.848485 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.787879 0.000000 0.212121 0.000000 0.555556 0.191919 0.252525 0.131313 0.373737 0.222222 0.272727 1.000000 0.000000 0.000000 0.000000 0.181818 0.000000 0.818182 0.000000 0.010101 0.060606 0.000000 0.929293 0.020202 0.161616 0.535354 0.282828 0.000000 0.000000 1.000000 0.000000 0.040404 0.030303 0.464646 0.464646 0.292929 0.121212 0.050505 0.535354 0.515152 0.010101 0.111111 0.363636 0.555556 0.131313 0.313131 0.000000 0.454545 0.101010 0.353535 0.090909 0.000000 0.181818 0.707071 0.111111 0.040404 0.464646 0.383838 0.111111 0.000000 0.454545 0.424242 0.121212 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YKTGGCCBAGTKGKWWRRGSS MEME-1 regular expression -------------------------------------------------------------------------------- [CT][TG]TGG[CT][CT][CTG]AGT[GT]G[GT][TA][AT][AG][AG]G[CG][CG] -------------------------------------------------------------------------------- Time 290.54 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGAACCSVKGAYCTYMNGAT MEME-2 width = 21 sites = 71 llr = 1137 E-value = 1.8e-189 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGAACCSVKGAYCTYMNGAT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::aa::14:28:::132:61 pos.-specific C :7:::a6632::68244432: probability G ::a::::33581:1::12721 matrix T a3::::31:3:2417523::8 bits 2.4 * * 2.1 * * 1.9 * * 1.7 * **** * Relative 1.4 ****** * * Entropy 1.2 ****** * ** * (23.1 bits) 0.9 ******* * *** * * 0.7 ******** ****** * * 0.5 **************** *** 0.2 ***************** *** 0.0 --------------------- Multilevel TCGAACCCAGGACCTTCCGAT consensus T TGGTA T CCATCC sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCSVKGAYCTYMNGAT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIV:631778-632022 + 11 1.54e-10 GAGCCGGGAC TCGAACCCGGGACCTCCCGCA CCCTAAGCGA chrXIII:480493-480846 + 17 8.17e-10 TGTAGGGGGC TCGAACCCCTAACCTTATGAT TAAGAGTCAT chrVI:226578-226910 + 9 8.17e-10 TAGGGGGC TCGAACCCCTAACCTTATGAT TAAGAGTCAT chrIV:1352305-1352648 + 55 8.17e-10 TGTAGGGGGC TCGAACCCCTAACCTTATGAT TAAGAGTCAT chrVII:185613-185908 + 19 8.17e-10 TGTAGGGGGC TCGAACCCCTAACCTTATGAT TAAGAGTCAT chrV:435658-435963 + 7 8.17e-10 GGGGGC TCGAACCCCTAACCTTATGAT TAAGAGTCAT chrIV:1201620-1201934 - 60 8.17e-10 TGTAGGGGGC TCGAACCCCTAACCTTATGAT TAAGAGTCAT chrX:414848-414948 - 69 8.17e-10 TGTAGGGGGC TCGAACCCCTAACCTTATGAT TAAGAGTCAT chrVII:122123-122433 - 78 8.17e-10 GC TCGAACCCCTAACCTTATGAT TAAGAGTCAT chrVII:440547-440995 + 10 1.69e-09 TTCTGTGGA TCGAACACAGGACCTCCAGAT AACTTGACCG chrIV:1095224-1095579 + 34 1.69e-09 ACTCTGTGGA TCGAACACAGGACCTCCAGAT ATCTTGACCA chrVIII:237747-238048 + 16 1.69e-09 ATTCTGTGGA TCGAACACAGGACCTCCAGAT AACTTGACCG chrVII:828556-828958 + 31 1.69e-09 ACGATGGGGG TCGAACCCATAATCTTCTGAT TAGAAGTCAG chrX:355225-355325 - 19 1.69e-09 ACGATGGGGG TCGAACCCATAATCTTCTGAT TAGAAGTCAG chrVII:736178-736541 - 67 1.69e-09 ACGATGGGGG TCGAACCCATAATCTTCTGAT TAGAAGTCAG chrII:405742-406132 - 27 1.69e-09 ACGATGGGGG TCGAACCCATAATCTTCTGAT TAGAAGTCAG chrI:166153-166458 - 49 4.85e-09 GCAACCGGAA TCGAACCGATGACCTCTTCCT TGCAAGGGAA chrXVI:819343-819755 - 68 6.20e-09 TCTAGCGGGA TCGAACCGCTGATCCCCGCGT TATTAGCACG chrXVI:880166-880546 + 5 6.20e-09 GGGA TCGAACCGCTGATCCCCGCGT TATTAGCACG chrXIV:569783-569983 + 49 6.20e-09 TCTAGCGGGA TCGAACCGCTGATCCCCGCGT TATTAGCACG chrIV:520844-521145 - 64 6.99e-09 CTACCCGGAT TCGAACCGGGGTTGTCCGGAT CAAAACCGAA chrIV:802649-802941 + 1 6.99e-09 . TCGAACCGGGGTTGTCCGGAT CAAAACCGAA chrIV:645067-645367 + 1 6.99e-09 . TCGAACCGGGGTTGTCCGGAT CAAAACCGAA chrVII:541703-542083 - 43 9.92e-09 ATACGGGGAG TCGAACCCCGGTCTCCACGGT GAAAGCGTGA chrXII:797034-797341 - 77 9.92e-09 GAG TCGAACCCCGGTCTCCACGGT GAAAGCGTGA chrV:487238-487541 + 7 9.92e-09 GGGGAG TCGAACCCCGGTCTCCACGGT GAAAGCGTGA chrV:176939-177366 - 33 9.92e-09 ATACGGGGAG TCGAACCCCGGTCTCCACGGT GAAAGCGTGA chrXI:140914-141205 + 24 9.92e-09 ATACGGGGAG TCGAACCCCGGTCTCCACGGT GAAAGCGTGA chrXIII:290631-290987 - 78 9.92e-09 AG TCGAACCCCGGTCTCCACGGT GAAAGCGTGA chrVII:401300-401776 + 54 9.92e-09 ATACGGGGAG TCGAACCCCGGTCTCCACGGT GAAAGCGTGA chrII:326640-327022 + 26 1.11e-08 CAACCGAGGT TCGAACTCGGGATCTTCGCCG TGTAAAGGCG chrIV:488584-489038 + 51 1.11e-08 CAACCGAGGT TCGAACTCGGGATCTTCGCCG TGTAAAGGCG chrX:422820-422920 - 68 1.24e-08 CAGGGGAGGT TCGAACTCTCGACCTTCAGAT TATGAGACTG chrXV:976329-976620 - 34 1.24e-08 CAGGGGAGGT TCGAACTCTCGACCTTCAGAT TATGAGACTG chrXV:353939-354250 + 12 1.55e-08 CCAATCGGAT TTGAACCGATGATCTCCACAT TACTAGTGTG chrVIII:475595-475905 + 21 1.55e-08 CAACCGAGGA TCGAACTCGGGACCTTTGCCG TGTGAAGGCA chrVIII:116003-116318 + 12 1.55e-08 CCAATCGGAT TTGAACCGATGATCTCCACAT TACTAGTGTG chrIV:1075376-1075687 + 6 1.55e-08 GAGGA TCGAACTCGGGACCTTTGCCG TGTGAAGGCA chrIX:325719-325947 - 2 1.55e-08 CCAATCGGAT TTGAACCGATGATCTCCACAT T chrXIV:104683-104994 - 54 1.55e-08 CCAATCGGAT TTGAACCGATGATCTCCACAT TACTAGTGTG chrV:469325-469611 - 77 1.92e-08 GGA TCGAACTGGGGACGTTCTGCG TGTTAAGCAG chrVII:823314-823673 - 77 1.92e-08 GGA TCGAACTGGGGACGTTCTGCG TGTTAAGCAG chrXI:308040-308377 + 1 1.92e-08 . TCGAACTGGGGACGTTCTGCG TGTTAAGCAG chrXV:438500-438848 - 79 1.92e-08 C TCGAACCCCTGACATTTCGGT ATCCTTGCTT chrVII:412175-412507 + 18 1.92e-08 TCGCCCAGGA TCGAACTGGGGACGTTCTGCG TGTTAAGCAG chrXIII:372358-372613 + 25 1.92e-08 TCGCCCAGGA TCGAACTGGGGACGTTCTGCG TGTTAAGCAG chrXV:282012-282326 - 80 2.13e-08 . TCGAACCGGGGGCCCAACGAT GGCAACGTTG chrX:233791-233891 - 78 2.13e-08 AC TCGAACCTGGAATCTTCTGGT TCGTAGCCAG chrIV:992714-992969 - 76 2.13e-08 GGAA TCGAACCGGGGGCCCAACGAT GGCAACGTTG chrXV:487420-487600 - 17 2.37e-08 CCAGTGAGGG TTGAACTCACGATCTTGCGAT TAACAGTCGC chrXVI:810569-810809 - 75 2.37e-08 GAGGG TTGAACTCACGATCTTGCGAT TAACAGTCGC chrXIV:102577-102885 - 73 2.37e-08 GTGAGGG TTGAACTCACGATCTTGCGAT TAACAGTCGC chrXII:975895-976191 + 5 2.37e-08 AGGG TTGAACTCACGATCTTGCGAT TAACAGTCGC chrVII:731019-731306 - 63 2.37e-08 CCAGTGAGGG TTGAACTCACGATCTTGCGAT TAACAGTCGC chrVI:137357-137677 + 34 2.37e-08 CCAGTGAGGG TTGAACTCACGATCTTGCGAT TAACAGTCGC chrVII:779472-779867 - 33 4.72e-08 GGTACGAGAA TCGAACCCGTGTCCCCACCTT GGAAGGGTGG chrXV:110834-111156 + 32 4.72e-08 GGTACGAGAA TCGAACCCGTGTCCCCACCTT GGAAGGGTGG chrVI:210498-210844 + 13 5.19e-08 CGGGGGCGAG TCGAACGCCCGATCTCAAGAT TTCGTAGTGG chrXII:374200-374539 - 73 8.17e-08 CCAGGAC TTGAACCTGGAATCTTCTGGT TCGTAGCCAG chrXIII:195984-196279 + 2 8.91e-08 A TTGAACCCAGGGCCTCTCGCA TGCTTTGTCT chrXV:980584-980867 - 77 8.91e-08 GAA TTGAACCCAGGGCCTCTCGCA TGCTTTGTTC chrXII:656808-657094 + 48 1.36e-07 GAGTCCGGAA TCGAACCGGAGACCTCTCCCA TGCTAAGGGA chrX:197224-197324 + 49 1.36e-07 GAGTCCGGAA TCGAACCGGAGACCTCTCCCA TGCTAAGGGA chrXVI:55984-56399 + 43 1.48e-07 CGGACAGGAA TTGAACCTGCAACCCTTCGAT TGCAATCTTA chrVII:878568-878956 + 13 1.48e-07 CGGACAGGAA TTGAACCTGCAACCCTTCGAT TGCAATCTTA chrVII:1004108-1004380 - 58 2.74e-07 CCTGTCAGAA TTGAACTAACGACCTTTGCAT TACAAGTGCA chrXVI:744143-744485 - 56 2.74e-07 CCTGTCAGAA TTGAACTAACGACCTTTGCAT TACAAGTGCA chrV:100000-100318 - 60 5.87e-07 CCGCTCGGTT TCGATCCGAGGACATCAGGGT TATGAGCCCT chrII:642925-643209 + 5 6.26e-07 AGGA TCGAACTAAGGACCAACAGAT TTGCAATCTG chrXVI:435792-436121 + 2 6.26e-07 A TCGAACTAAGGACCAACAGAT TTGCAATCTG chrIV:307039-307381 - 62 1.15e-06 ATCACTTTGG TTGAACCAGAAATCCTAAGAT TCAAGGTCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCSVKGAYCTYMNGAT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631778-632022 1.5e-10 10_[+2]_69 chrXIII:480493-480846 8.2e-10 16_[+2]_63 chrVI:226578-226910 8.2e-10 8_[+2]_71 chrIV:1352305-1352648 8.2e-10 54_[+2]_25 chrVII:185613-185908 8.2e-10 18_[+2]_61 chrV:435658-435963 8.2e-10 6_[+2]_73 chrIV:1201620-1201934 8.2e-10 59_[-2]_20 chrX:414848-414948 8.2e-10 68_[-2]_11 chrVII:122123-122433 8.2e-10 77_[-2]_2 chrVII:440547-440995 1.7e-09 9_[+2]_70 chrIV:1095224-1095579 1.7e-09 33_[+2]_46 chrVIII:237747-238048 1.7e-09 15_[+2]_64 chrVII:828556-828958 1.7e-09 30_[+2]_49 chrX:355225-355325 1.7e-09 18_[-2]_61 chrVII:736178-736541 1.7e-09 66_[-2]_13 chrII:405742-406132 1.7e-09 26_[-2]_53 chrI:166153-166458 4.9e-09 48_[-2]_31 chrXVI:819343-819755 6.2e-09 67_[-2]_12 chrXVI:880166-880546 6.2e-09 4_[+2]_75 chrXIV:569783-569983 6.2e-09 48_[+2]_31 chrIV:520844-521145 7e-09 63_[-2]_16 chrIV:802649-802941 7e-09 [+2]_79 chrIV:645067-645367 7e-09 [+2]_79 chrVII:541703-542083 9.9e-09 42_[-2]_37 chrXII:797034-797341 9.9e-09 76_[-2]_3 chrV:487238-487541 9.9e-09 6_[+2]_73 chrV:176939-177366 9.9e-09 32_[-2]_47 chrXI:140914-141205 9.9e-09 23_[+2]_56 chrXIII:290631-290987 9.9e-09 77_[-2]_2 chrVII:401300-401776 9.9e-09 53_[+2]_26 chrII:326640-327022 1.1e-08 25_[+2]_54 chrIV:488584-489038 1.1e-08 50_[+2]_29 chrX:422820-422920 1.2e-08 67_[-2]_12 chrXV:976329-976620 1.2e-08 33_[-2]_46 chrXV:353939-354250 1.5e-08 11_[+2]_68 chrVIII:475595-475905 1.5e-08 20_[+2]_59 chrVIII:116003-116318 1.5e-08 11_[+2]_68 chrIV:1075376-1075687 1.5e-08 5_[+2]_74 chrIX:325719-325947 1.5e-08 1_[-2]_78 chrXIV:104683-104994 1.5e-08 53_[-2]_26 chrV:469325-469611 1.9e-08 76_[-2]_3 chrVII:823314-823673 1.9e-08 76_[-2]_3 chrXI:308040-308377 1.9e-08 [+2]_79 chrXV:438500-438848 1.9e-08 78_[-2]_1 chrVII:412175-412507 1.9e-08 17_[+2]_62 chrXIII:372358-372613 1.9e-08 24_[+2]_55 chrXV:282012-282326 2.1e-08 79_[-2] chrX:233791-233891 2.1e-08 77_[-2]_2 chrIV:992714-992969 2.1e-08 75_[-2]_4 chrXV:487420-487600 2.4e-08 16_[-2]_63 chrXVI:810569-810809 2.4e-08 74_[-2]_5 chrXIV:102577-102885 2.4e-08 72_[-2]_7 chrXII:975895-976191 2.4e-08 4_[+2]_75 chrVII:731019-731306 2.4e-08 62_[-2]_17 chrVI:137357-137677 2.4e-08 33_[+2]_46 chrVII:779472-779867 4.7e-08 32_[-2]_47 chrXV:110834-111156 4.7e-08 31_[+2]_48 chrVI:210498-210844 5.2e-08 12_[+2]_67 chrXII:374200-374539 8.2e-08 72_[-2]_7 chrXIII:195984-196279 8.9e-08 1_[+2]_78 chrXV:980584-980867 8.9e-08 76_[-2]_3 chrXII:656808-657094 1.4e-07 47_[+2]_32 chrX:197224-197324 1.4e-07 48_[+2]_31 chrXVI:55984-56399 1.5e-07 42_[+2]_37 chrVII:878568-878956 1.5e-07 12_[+2]_67 chrVII:1004108-1004380 2.7e-07 57_[-2]_22 chrXVI:744143-744485 2.7e-07 55_[-2]_24 chrV:100000-100318 5.9e-07 59_[-2]_20 chrII:642925-643209 6.3e-07 4_[+2]_75 chrXVI:435792-436121 6.3e-07 1_[+2]_78 chrIV:307039-307381 1.1e-06 61_[-2]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCSVKGAYCTYMNGAT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGAACCSVKGAYCTYMNGAT width=21 seqs=71 chrXIV:631778-632022 ( 11) TCGAACCCGGGACCTCCCGCA 1 chrXIII:480493-480846 ( 17) TCGAACCCCTAACCTTATGAT 1 chrVI:226578-226910 ( 9) TCGAACCCCTAACCTTATGAT 1 chrIV:1352305-1352648 ( 55) TCGAACCCCTAACCTTATGAT 1 chrVII:185613-185908 ( 19) TCGAACCCCTAACCTTATGAT 1 chrV:435658-435963 ( 7) TCGAACCCCTAACCTTATGAT 1 chrIV:1201620-1201934 ( 60) TCGAACCCCTAACCTTATGAT 1 chrX:414848-414948 ( 69) TCGAACCCCTAACCTTATGAT 1 chrVII:122123-122433 ( 78) TCGAACCCCTAACCTTATGAT 1 chrVII:440547-440995 ( 10) TCGAACACAGGACCTCCAGAT 1 chrIV:1095224-1095579 ( 34) TCGAACACAGGACCTCCAGAT 1 chrVIII:237747-238048 ( 16) TCGAACACAGGACCTCCAGAT 1 chrVII:828556-828958 ( 31) TCGAACCCATAATCTTCTGAT 1 chrX:355225-355325 ( 19) TCGAACCCATAATCTTCTGAT 1 chrVII:736178-736541 ( 67) TCGAACCCATAATCTTCTGAT 1 chrII:405742-406132 ( 27) TCGAACCCATAATCTTCTGAT 1 chrI:166153-166458 ( 49) TCGAACCGATGACCTCTTCCT 1 chrXVI:819343-819755 ( 68) TCGAACCGCTGATCCCCGCGT 1 chrXVI:880166-880546 ( 5) TCGAACCGCTGATCCCCGCGT 1 chrXIV:569783-569983 ( 49) TCGAACCGCTGATCCCCGCGT 1 chrIV:520844-521145 ( 64) TCGAACCGGGGTTGTCCGGAT 1 chrIV:802649-802941 ( 1) TCGAACCGGGGTTGTCCGGAT 1 chrIV:645067-645367 ( 1) TCGAACCGGGGTTGTCCGGAT 1 chrVII:541703-542083 ( 43) TCGAACCCCGGTCTCCACGGT 1 chrXII:797034-797341 ( 77) TCGAACCCCGGTCTCCACGGT 1 chrV:487238-487541 ( 7) TCGAACCCCGGTCTCCACGGT 1 chrV:176939-177366 ( 33) TCGAACCCCGGTCTCCACGGT 1 chrXI:140914-141205 ( 24) TCGAACCCCGGTCTCCACGGT 1 chrXIII:290631-290987 ( 78) TCGAACCCCGGTCTCCACGGT 1 chrVII:401300-401776 ( 54) TCGAACCCCGGTCTCCACGGT 1 chrII:326640-327022 ( 26) TCGAACTCGGGATCTTCGCCG 1 chrIV:488584-489038 ( 51) TCGAACTCGGGATCTTCGCCG 1 chrX:422820-422920 ( 68) TCGAACTCTCGACCTTCAGAT 1 chrXV:976329-976620 ( 34) TCGAACTCTCGACCTTCAGAT 1 chrXV:353939-354250 ( 12) TTGAACCGATGATCTCCACAT 1 chrVIII:475595-475905 ( 21) TCGAACTCGGGACCTTTGCCG 1 chrVIII:116003-116318 ( 12) TTGAACCGATGATCTCCACAT 1 chrIV:1075376-1075687 ( 6) TCGAACTCGGGACCTTTGCCG 1 chrIX:325719-325947 ( 2) TTGAACCGATGATCTCCACAT 1 chrXIV:104683-104994 ( 54) TTGAACCGATGATCTCCACAT 1 chrV:469325-469611 ( 77) TCGAACTGGGGACGTTCTGCG 1 chrVII:823314-823673 ( 77) TCGAACTGGGGACGTTCTGCG 1 chrXI:308040-308377 ( 1) TCGAACTGGGGACGTTCTGCG 1 chrXV:438500-438848 ( 79) TCGAACCCCTGACATTTCGGT 1 chrVII:412175-412507 ( 18) TCGAACTGGGGACGTTCTGCG 1 chrXIII:372358-372613 ( 25) TCGAACTGGGGACGTTCTGCG 1 chrXV:282012-282326 ( 80) TCGAACCGGGGGCCCAACGAT 1 chrX:233791-233891 ( 78) TCGAACCTGGAATCTTCTGGT 1 chrIV:992714-992969 ( 76) TCGAACCGGGGGCCCAACGAT 1 chrXV:487420-487600 ( 17) TTGAACTCACGATCTTGCGAT 1 chrXVI:810569-810809 ( 75) TTGAACTCACGATCTTGCGAT 1 chrXIV:102577-102885 ( 73) TTGAACTCACGATCTTGCGAT 1 chrXII:975895-976191 ( 5) TTGAACTCACGATCTTGCGAT 1 chrVII:731019-731306 ( 63) TTGAACTCACGATCTTGCGAT 1 chrVI:137357-137677 ( 34) TTGAACTCACGATCTTGCGAT 1 chrVII:779472-779867 ( 33) TCGAACCCGTGTCCCCACCTT 1 chrXV:110834-111156 ( 32) TCGAACCCGTGTCCCCACCTT 1 chrVI:210498-210844 ( 13) TCGAACGCCCGATCTCAAGAT 1 chrXII:374200-374539 ( 73) TTGAACCTGGAATCTTCTGGT 1 chrXIII:195984-196279 ( 2) TTGAACCCAGGGCCTCTCGCA 1 chrXV:980584-980867 ( 77) TTGAACCCAGGGCCTCTCGCA 1 chrXII:656808-657094 ( 48) TCGAACCGGAGACCTCTCCCA 1 chrX:197224-197324 ( 49) TCGAACCGGAGACCTCTCCCA 1 chrXVI:55984-56399 ( 43) TTGAACCTGCAACCCTTCGAT 1 chrVII:878568-878956 ( 13) TTGAACCTGCAACCCTTCGAT 1 chrVII:1004108-1004380 ( 58) TTGAACTAACGACCTTTGCAT 1 chrXVI:744143-744485 ( 56) TTGAACTAACGACCTTTGCAT 1 chrV:100000-100318 ( 60) TCGATCCGAGGACATCAGGGT 1 chrII:642925-643209 ( 5) TCGAACTAAGGACCAACAGAT 1 chrXVI:435792-436121 ( 2) TCGAACTAAGGACCAACAGAT 1 chrIV:307039-307381 ( 62) TTGAACCAGAAATCCTAAGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCSVKGAYCTYMNGAT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 43680 bayes= 8.5454 E= 1.8e-189 -1279 -1279 -1279 171 -1279 194 -1279 -27 -1279 -1279 236 -1279 171 -1279 -1279 -1279 169 -1279 -1279 -443 -1279 236 -1279 -1279 -285 173 -379 -4 -211 157 60 -244 21 53 79 -343 -285 -9 121 9 -35 -1279 196 -1279 135 -1279 -179 -85 -1279 170 -1279 26 -343 196 -79 -163 -343 30 -1279 126 -244 111 -1279 77 2 116 -121 -85 -74 85 -9 -11 -1279 38 194 -1279 89 11 2 -343 -211 -1279 -62 140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCSVKGAYCTYMNGAT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 71 E= 1.8e-189 0.000000 0.000000 0.000000 1.000000 0.000000 0.746479 0.000000 0.253521 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.985915 0.000000 0.000000 0.014085 0.000000 1.000000 0.000000 0.000000 0.042254 0.647887 0.014085 0.295775 0.070423 0.577465 0.295775 0.056338 0.352113 0.281690 0.338028 0.028169 0.042254 0.183099 0.450704 0.323944 0.239437 0.000000 0.760563 0.000000 0.774648 0.000000 0.056338 0.169014 0.000000 0.633803 0.000000 0.366197 0.028169 0.760563 0.112676 0.098592 0.028169 0.239437 0.000000 0.732394 0.056338 0.422535 0.000000 0.521127 0.309859 0.436620 0.084507 0.169014 0.183099 0.352113 0.183099 0.281690 0.000000 0.253521 0.746479 0.000000 0.563380 0.211268 0.197183 0.028169 0.070423 0.000000 0.126761 0.802817 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCSVKGAYCTYMNGAT MEME-2 regular expression -------------------------------------------------------------------------------- T[CT]GAAC[CT][CG][AGC][GT][GA]A[CT]C[TC][TC][CA][CT][GC][AC]T -------------------------------------------------------------------------------- Time 549.91 secs. ******************************************************************************** ******************************************************************************** MOTIF RSSKVAHGTGATARCCRYTACACTATADSR MEME-3 width = 30 sites = 23 llr = 575 E-value = 1.7e-094 ******************************************************************************** -------------------------------------------------------------------------------- Motif RSSKVAHGTGATARCCRYTACACTATADSR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 6:::3723::7:86::6::92a::a:7314 pos.-specific C :651223:::3:::aa:4::8:a:::3:6: probability G 445541:7:8::24::4::::::::::336 matrix T :::4::4:a2:a:::::6a::::a:913:: bits 2.4 * 2.1 ** * 1.9 ** * 1.7 * * ** * * * Relative 1.4 * ** * ** * ***** Entropy 1.2 ** *** ** ** ******** (36.0 bits) 0.9 ** ******************* ** 0.7 *** * ******************** ** 0.5 ****** ******************** ** 0.2 ****************************** 0.0 ------------------------------ Multilevel ACCGGATGTGATAACCATTACACTATATCG consensus GGGTACCA TC GG GC A CAGA sequence C A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSSKVAHGTGATARCCRYTACACTATADSR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrVII:541703-542083 - 9 8.16e-16 CACGGTGAAA GCGTGATGTGATAGCCGTTACACTATATCG GATGGTAA chrXII:797034-797341 - 43 8.16e-16 CACGGTGAAA GCGTGATGTGATAGCCGTTACACTATATCG GACGACAACT chrIII:82419-82674 + 6 8.16e-16 TGAAA GCGTGATGTGATAGCCGTTACACTATATCG GATAACAAAT chrXVI:210124-210413 + 14 8.16e-16 CACGGTGAAA GCGTGATGTGATAGCCGTTACACTATATCG GACAATAATT chrV:487238-487541 + 32 8.16e-16 CACGGTGAAA GCGTGATGTGATAGCCGTTACACTATATCG GATTAAATTC chrXI:140914-141205 + 49 8.16e-16 CACGGTGAAA GCGTGATGTGATAGCCGTTACACTATATCG GATTACAAAG chrXIII:290631-290987 - 44 8.16e-16 CACGGTGAAA GCGTGATGTGATAGCCGTTACACTATATCG GATTATATTT chrIX:370264-370563 - 56 8.16e-16 CACGGTGAAA GCGTGATGTGATAGCCGTTACACTATATCG GATTATAATC chrIII:168208-168527 + 24 5.81e-14 CCGGATCAAA ACCGAAAGTGATAACCACTACACTATAGGA CCAGGACTTC chrIV:520844-521145 - 30 5.81e-14 CCGGATCAAA ACCGAAAGTGATAACCACTACACTATAGGA CCCTAAAATG chrIV:802649-802941 + 26 5.81e-14 CCGGATCAAA ACCGAAAGTGATAACCACTACACTATAGGA CCGACAATTC chrIV:645067-645367 + 26 5.81e-14 CCGGATCAAA ACCGAAAGTGATAACCACTACACTATAGGA CCGTAACAAC chrV:131015-131284 + 23 1.07e-12 TCGGATCAAA ACCGAAAGTGATAACCACTACACTATAAAA CCTCTTAATT chrVIII:475595-475905 + 47 1.76e-12 TGCCGTGTGA AGGCAACGTGATAGCCGCTACACTATTGGA ACAGACTTTT chrIV:1075376-1075687 + 32 1.76e-12 TGCCGTGTGA AGGCAACGTGATAGCCGCTACACTATTGGA ACAATATTAC chrVII:544452-544797 + 43 2.12e-11 GCACGCGACA AGCGCCCATTCTGACCATTAAACTATCACG GAAGAAATAT chrXI:513272-513532 + 20 2.12e-11 GCACGCGACA AGCGCCCATTCTGACCATTAAACTATCACG GAACGTTATT chrX:355225-355325 - 67 2.12e-11 GACA AGCGCCCATTCTGACCATTAAACTATCACG GAAGAAACAA chrX:204583-204683 - 32 2.12e-11 GCACGCGACA AGCGCCCATTCTGACCATTAAACTATCACG GATTTTTATG chrX:541432-541532 - 13 2.12e-11 GCACGCGACA AGCGCCCATTCTGACCATTAAACTATCACG GATTTTCTTT chrXV:110834-111156 + 57 6.65e-10 CACCTTGGAA GGGTGGGATGATAACCACTACACTAACCGC CCGGGTTAAT chrXII:818494-818768 - 30 4.57e-09 AGCCACCGGA AGAATGCATGCTAACCATTGCACTAGAGGA GCATAATAAA chrXIII:753789-753945 - 11 2.57e-08 TACCTGACCT TGCGAATGTGATAATAACTCCTCCATAAAA GCTTCCCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSSKVAHGTGATARCCRYTACACTATADSR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:541703-542083 8.2e-16 8_[-3]_62 chrXII:797034-797341 8.2e-16 42_[-3]_28 chrIII:82419-82674 8.2e-16 5_[+3]_65 chrXVI:210124-210413 8.2e-16 13_[+3]_57 chrV:487238-487541 8.2e-16 31_[+3]_39 chrXI:140914-141205 8.2e-16 48_[+3]_22 chrXIII:290631-290987 8.2e-16 43_[-3]_27 chrIX:370264-370563 8.2e-16 55_[-3]_15 chrIII:168208-168527 5.8e-14 23_[+3]_47 chrIV:520844-521145 5.8e-14 29_[-3]_41 chrIV:802649-802941 5.8e-14 25_[+3]_45 chrIV:645067-645367 5.8e-14 25_[+3]_45 chrV:131015-131284 1.1e-12 22_[+3]_48 chrVIII:475595-475905 1.8e-12 46_[+3]_24 chrIV:1075376-1075687 1.8e-12 31_[+3]_39 chrVII:544452-544797 2.1e-11 42_[+3]_28 chrXI:513272-513532 2.1e-11 19_[+3]_51 chrX:355225-355325 2.1e-11 66_[-3]_4 chrX:204583-204683 2.1e-11 31_[-3]_39 chrX:541432-541532 2.1e-11 12_[-3]_58 chrXV:110834-111156 6.7e-10 56_[+3]_14 chrXII:818494-818768 4.6e-09 29_[-3]_41 chrXIII:753789-753945 2.6e-08 10_[-3]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSSKVAHGTGATARCCRYTACACTATADSR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RSSKVAHGTGATARCCRYTACACTATADSR width=30 seqs=23 chrVII:541703-542083 ( 9) GCGTGATGTGATAGCCGTTACACTATATCG 1 chrXII:797034-797341 ( 43) GCGTGATGTGATAGCCGTTACACTATATCG 1 chrIII:82419-82674 ( 6) GCGTGATGTGATAGCCGTTACACTATATCG 1 chrXVI:210124-210413 ( 14) GCGTGATGTGATAGCCGTTACACTATATCG 1 chrV:487238-487541 ( 32) GCGTGATGTGATAGCCGTTACACTATATCG 1 chrXI:140914-141205 ( 49) GCGTGATGTGATAGCCGTTACACTATATCG 1 chrXIII:290631-290987 ( 44) GCGTGATGTGATAGCCGTTACACTATATCG 1 chrIX:370264-370563 ( 56) GCGTGATGTGATAGCCGTTACACTATATCG 1 chrIII:168208-168527 ( 24) ACCGAAAGTGATAACCACTACACTATAGGA 1 chrIV:520844-521145 ( 30) ACCGAAAGTGATAACCACTACACTATAGGA 1 chrIV:802649-802941 ( 26) ACCGAAAGTGATAACCACTACACTATAGGA 1 chrIV:645067-645367 ( 26) ACCGAAAGTGATAACCACTACACTATAGGA 1 chrV:131015-131284 ( 23) ACCGAAAGTGATAACCACTACACTATAAAA 1 chrVIII:475595-475905 ( 47) AGGCAACGTGATAGCCGCTACACTATTGGA 1 chrIV:1075376-1075687 ( 32) AGGCAACGTGATAGCCGCTACACTATTGGA 1 chrVII:544452-544797 ( 43) AGCGCCCATTCTGACCATTAAACTATCACG 1 chrXI:513272-513532 ( 20) AGCGCCCATTCTGACCATTAAACTATCACG 1 chrX:355225-355325 ( 67) AGCGCCCATTCTGACCATTAAACTATCACG 1 chrX:204583-204683 ( 32) AGCGCCCATTCTGACCATTAAACTATCACG 1 chrX:541432-541532 ( 13) AGCGCCCATTCTGACCATTAAACTATCACG 1 chrXV:110834-111156 ( 57) GGGTGGGATGATAACCACTACACTAACCGC 1 chrXII:818494-818768 ( 30) AGAATGCATGCTAACCATTGCACTAGAGGA 1 chrXIII:753789-753945 ( 11) TGCGAATGTGATAATAACTCCTCCATAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSSKVAHGTGATARCCRYTACACTATADSR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 38766 bayes= 11.7827 E= 1.7e-094 89 -1117 100 -281 -1117 153 116 -1117 -281 129 129 -1117 -281 -117 129 36 19 16 100 -281 119 16 -117 -1117 -49 83 -216 36 0 -1117 183 -1117 -1117 -1117 -1117 171 -1117 -1117 200 -49 128 42 -1117 -1117 -1117 -1117 -1117 171 136 -1117 16 -1117 89 -1117 116 -1117 -1117 229 -1117 -281 -281 229 -1117 -1117 89 -1117 116 -1117 -1117 100 -1117 100 -1117 -1117 -1117 171 158 -216 -216 -1117 -49 200 -1117 -1117 165 -1117 -1117 -281 -1117 236 -1117 -1117 -1117 -216 -1117 165 171 -1117 -1117 -1117 -281 -1117 -216 158 110 42 -1117 -181 0 -216 64 19 -181 153 83 -1117 36 -216 153 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSSKVAHGTGATARCCRYTACACTATADSR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 23 E= 1.7e-094 0.565217 0.000000 0.391304 0.043478 0.000000 0.565217 0.434783 0.000000 0.043478 0.478261 0.478261 0.000000 0.043478 0.086957 0.478261 0.391304 0.347826 0.217391 0.391304 0.043478 0.695652 0.217391 0.086957 0.000000 0.217391 0.347826 0.043478 0.391304 0.304348 0.000000 0.695652 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.782609 0.217391 0.739130 0.260870 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.782609 0.000000 0.217391 0.000000 0.565217 0.000000 0.434783 0.000000 0.000000 0.956522 0.000000 0.043478 0.043478 0.956522 0.000000 0.000000 0.565217 0.000000 0.434783 0.000000 0.000000 0.391304 0.000000 0.608696 0.000000 0.000000 0.000000 1.000000 0.913043 0.043478 0.043478 0.000000 0.217391 0.782609 0.000000 0.000000 0.956522 0.000000 0.000000 0.043478 0.000000 1.000000 0.000000 0.000000 0.000000 0.043478 0.000000 0.956522 1.000000 0.000000 0.000000 0.000000 0.043478 0.000000 0.043478 0.913043 0.652174 0.260870 0.000000 0.086957 0.304348 0.043478 0.304348 0.347826 0.086957 0.565217 0.347826 0.000000 0.391304 0.043478 0.565217 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSSKVAHGTGATARCCRYTACACTATADSR MEME-3 regular expression -------------------------------------------------------------------------------- [AG][CG][CG][GT][GAC][AC][TCA][GA]T[GT][AC]T[AG][AG]CC[AG][TC]TA[CA]ACTAT[AC][TAG][CG][GA] -------------------------------------------------------------------------------- Time 804.59 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:968790-969151 7.85e-01 100 chrV:42194-42437 7.69e-01 100 chrXII:253737-254213 1.84e-01 100 chrXV:407627-407942 8.43e-03 100 chrXIII:226101-226577 3.34e-01 100 chrI:141544-142009 7.60e-01 100 chrXI:74470-74776 3.14e-06 55_[+1(4.80e-09)]_24 chrVII:736316-736792 9.99e-01 100 chrIV:357309-357785 1.43e-02 100 chrXII:818494-818768 2.49e-07 29_[-3(4.57e-09)]_4_[-2(5.52e-05)]_\ 16 chrII:478891-479322 9.54e-01 100 chrX:197224-197324 6.92e-04 48_[+2(1.36e-07)]_31 chrII:36257-36564 1.23e-04 42_[+1(2.16e-07)]_37 chrXIV:89051-89740 6.69e-01 100 chrXVI:282743-283219 7.55e-01 100 chrII:226954-227277 4.45e-07 14_[+1(1.54e-11)]_65 chrXII:263705-263888 4.98e-01 100 chrVI:137357-137677 1.07e-09 33_[+2(2.37e-08)]_12_[-1(4.80e-09)]_\ 13 chrXIV:417741-418217 2.20e-01 100 chrV:221503-221813 4.65e-01 100 chrIV:309615-309824 9.82e-01 100 chrV:85695-86788 5.28e-01 100 chrIV:599734-600238 6.40e-01 100 chrV:266220-266470 9.19e-01 100 chrVIII:34406-36059 6.99e-01 100 chrV:174756-175005 9.47e-01 100 chrVII:479221-483005 3.85e-01 100 chrXII:819334-819810 3.88e-01 100 chrXIII:297026-298846 9.58e-01 100 chrIII:30667-31143 6.66e-01 100 chrXII:283231-283902 6.03e-01 100 chrIV:1402972-1403340 7.78e-01 100 chrXV:977943-978419 4.82e-01 100 chrXII:97523-97884 8.48e-01 100 chrIX:98280-98756 6.24e-01 100 chrXV:594237-594582 7.64e-07 9_[+2(3.80e-05)]_4_[+3(5.08e-07)]_\ 36 chrVII:366157-366577 6.04e-01 100 chrIX:370264-370563 8.90e-12 55_[-3(8.16e-16)]_15 chrXV:977730-978206 9.07e-01 100 chrXV:980584-980867 2.39e-10 14_[-3(7.02e-07)]_32_[-2(8.91e-08)]_\ 3 chrV:424922-425161 2.48e-01 100 chrXIII:431714-432183 3.40e-01 100 chrIV:44273-44469 1.47e-01 100 chrIX:26115-26591 1.82e-01 100 chrXV:678197-678673 9.14e-01 100 chrXII:639230-639771 1.61e-02 23_[+1(1.34e-05)]_56 chrVII:387-863 8.19e-01 100 chrIV:1233680-1234102 8.29e-01 100 chrXIII:761997-762473 4.29e-01 100 chrXII:201626-202468 3.45e-01 100 chrVII:731019-731306 1.07e-09 29_[+1(4.80e-09)]_12_[-2(2.37e-08)]_\ 17 chrXII:729010-729486 8.08e-01 100 chrIV:579518-580480 2.85e-02 32_[-1(1.06e-05)]_47 chrIX:316254-316490 7.97e-01 100 chrVII:311146-312277 1.91e-01 100 chrVII:148242-148538 6.90e-01 100 chrXII:975895-976191 8.93e-10 4_[+2(2.37e-08)]_12_[-1(4.80e-09)]_\ 42 chrXII:636834-638337 5.23e-01 100 chrIV:385869-387329 5.47e-01 100 chrII:256338-256579 7.98e-01 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73_[-1(7.53e-05)]_6 chrXIII:289436-289559 4.40e-01 100 chrXII:366135-366413 1.43e-01 100 chrV:77504-77889 4.37e-01 100 chrVII:399201-399449 3.38e-01 100 chrXVI:649036-649512 6.52e-02 39_[-1(6.17e-05)]_40 chrXIII:379236-379546 2.63e-04 41_[-1(2.18e-06)]_38 chrXI:308040-308377 1.79e-09 [+2(1.92e-08)]_12_[-1(3.17e-08)]_46 chrXVI:112674-113150 9.31e-02 100 chrX:523921-524021 5.40e-08 33_[-1(1.54e-11)]_46 chrVII:939080-939556 8.98e-01 100 chrIX:332860-333159 1.06e-01 100 chrXIII:119170-119646 2.34e-01 100 chrX:355225-355325 2.00e-14 18_[-2(1.69e-09)]_27_[-3(2.12e-11)]_\ 4 chrXII:962927-963188 9.89e-06 22_[-1(1.85e-09)]_57 chrVI:224608-225084 7.80e-01 100 chrXV:841587-842063 5.89e-01 100 chrXI:364545-365209 9.92e-01 100 chrXII:243259-243408 7.34e-01 100 chrXVI:645292-645618 6.76e-01 100 chrXII:728235-728531 8.93e-01 100 chrVII:592238-592714 7.11e-01 100 chrIII:30572-30809 5.28e-01 100 chrVIII:116003-116318 4.05e-10 11_[+2(1.55e-08)]_11_[-1(6.46e-09)]_\ 36 chrII:46128-46397 4.01e-01 100 chrIV:884197-884576 3.78e-07 29_[+1(7.08e-08)]_50 chrII:614455-614931 9.63e-01 100 chrVII:1004108-1004380 5.70e-07 26_[+1(1.12e-06)]_10_[-2(2.74e-07)]_\ 22 chrXII:721814-722290 9.76e-01 100 chrXIII:91875-92068 1.05e-01 100 chrVII:823314-823673 1.79e-09 43_[+1(3.17e-08)]_12_[-2(1.92e-08)]_\ 3 chrXIV:252179-252655 4.56e-01 100 chrX:233791-233891 5.48e-10 45_[+1(5.58e-09)]_11_[-2(2.13e-08)]_\ 2 chrV:176939-177366 1.11e-04 32_[-2(9.92e-09)]_47 chrXV:779930-781022 2.11e-01 100 chrV:237601-238077 5.14e-01 100 chrVII:648224-648700 2.91e-01 100 chrII:9442-9678 1.33e-05 77_[+1(1.85e-09)]_2 chrXIII:551485-551693 8.29e-01 100 chrXII:656808-657094 1.14e-08 47_[+2(1.36e-07)]_11_[-1(1.30e-08)] chrXIV:759385-759717 2.12e-01 100 chrXIII:753789-753945 2.41e-04 10_[-3(2.57e-08)]_60 chrVIII:475595-475905 1.09e-13 20_[+2(1.55e-08)]_5_[+3(1.76e-12)]_\ 24 chrXIV:661251-661727 7.04e-01 100 chrIV:218281-218431 6.13e-01 100 chrXI:513272-513532 8.17e-10 19_[+3(2.12e-11)]_51 chrVII:828556-828958 5.13e-09 30_[+2(1.69e-09)]_10_[-1(2.62e-06)]_\ 18 chrIV:555797-556083 9.07e-03 43_[-3(1.83e-05)]_27 chrXI:46674-46940 3.23e-04 23_[-1(9.64e-07)]_56 chrVII:345952-346685 1.78e-01 100 chrXII:348146-348487 3.12e-01 100 chrVII:807166-807642 6.09e-01 100 chrXIII:550277-550588 2.11e-01 100 chrII:301164-301680 2.13e-01 100 chrIV:307039-307381 5.31e-04 61_[-2(1.15e-06)]_18 chrXVI:282190-282666 8.48e-01 100 chrXVI:880166-880546 8.84e-13 4_[+2(6.20e-09)]_12_[-1(7.57e-11)]_\ 42 chrV:487238-487541 1.43e-16 6_[+2(9.92e-09)]_4_[+3(8.16e-16)]_\ 39 chrIV:519644-519840 1.42e-05 55_[+1(1.85e-09)]_24 chrXVI:376927-377403 8.20e-01 100 chrVI:162089-162376 8.95e-04 50_[+1(5.18e-07)]_29 chrXVI:114401-114776 7.03e-01 100 chrXVI:107690-108166 4.76e-01 100 chrVII:316869-317345 7.76e-01 100 chrXVI:210124-210413 1.89e-11 13_[+3(8.16e-16)]_57 chrIII:168208-168527 1.04e-10 23_[+3(5.81e-14)]_47 chrXIV:577132-577334 9.79e-01 100 chrVII:987281-987756 5.34e-01 100 chrII:624955-625128 6.16e-01 100 chrXIV:619684-620100 4.89e-01 100 chrXII:95485-95961 1.60e-01 100 chrXV:671023-671477 6.90e-01 100 chrXIV:739224-739705 8.75e-01 100 chrXII:88142-88491 8.85e-01 100 chrV:362772-363248 8.49e-01 100 chrXII:710607-710909 4.29e-01 100 chrIV:428187-428663 3.92e-01 100 chrVII:561380-561856 3.88e-01 100 chrXV:91978-92454 3.17e-01 100 chrXVI:821853-822238 9.04e-01 100 chrIII:313413-313889 3.03e-01 100 chrXII:48285-48761 2.21e-01 100 chrXVI:829960-830436 3.56e-01 100 chrIII:82419-82674 2.01e-11 5_[+3(8.16e-16)]_65 chrXVI:280582-281423 4.12e-01 100 chrIII:295320-295612 2.06e-05 72_[+1(6.46e-09)]_7 chrXVI:95564-96040 8.45e-01 100 chrII:165074-165582 5.66e-01 100 chrII:169094-169311 1.75e-01 100 chrXI:146870-147202 7.05e-01 100 chrXII:784205-784526 9.56e-07 43_[+1(4.33e-10)]_36 chrXII:167873-168175 5.44e-08 25_[-1(1.54e-11)]_54 chrVII:205360-205733 1.57e-04 29_[+1(3.57e-08)]_50 chrX:73722-73822 8.05e-01 100 chrX:662891-662991 5.64e-01 100 chrVI:226578-226910 7.21e-11 8_[+2(8.17e-10)]_11_[-1(7.08e-08)]_\ 39 chrVII:771915-772308 4.56e-01 100 chrXIV:568184-568660 5.22e-01 100 chrVIII:237747-238048 4.07e-10 15_[+2(1.69e-09)]_30_[-1(2.16e-07)]_\ 13 chrXV:353939-354250 4.05e-10 11_[+2(1.55e-08)]_11_[-1(6.46e-09)]_\ 36 chrXV:520573-520987 5.11e-01 100 chrII:594961-595437 7.27e-01 100 chrXV:444689-446183 5.38e-01 100 chrX:517817-517917 2.25e-03 11_[-1(2.84e-07)]_68 chrXVI:678853-679379 2.00e-01 100 chrIII:228616-228891 8.93e-01 100 chrXIII:552927-553097 6.63e-02 74_[+1(9.56e-05)]_5 chrV:306780-306985 9.11e-01 100 chrIII:162645-163121 6.04e-01 100 chrXV:678110-678243 3.62e-01 100 chrXVI:303351-304053 2.30e-01 100 chrXVI:98763-98983 1.00e+00 100 chrV:138537-139098 9.77e-01 100 chrXV:110834-111156 5.02e-11 31_[+2(4.72e-08)]_4_[+3(6.65e-10)]_\ 14 chrXV:487420-487600 5.51e-05 16_[-2(2.37e-08)]_63 chrVI:223311-223514 2.94e-01 100 chrIV:980853-981192 4.45e-07 57_[-1(1.54e-11)]_22 chrIV:1450193-1450344 6.60e-01 100 chrXVI:829060-829379 4.14e-02 41_[+2(9.13e-05)]_38 chrV:469325-469611 1.79e-09 43_[+1(3.17e-08)]_12_[-2(1.92e-08)]_\ 3 chrXII:797034-797341 1.43e-16 42_[-3(8.16e-16)]_4_[-2(9.92e-09)]_\ 3 chrXVI:502878-503200 6.72e-01 100 chrX:663838-663938 9.56e-01 100 chrVII:278313-278789 8.13e-01 100 chrXIII:914949-915452 6.96e-01 100 chrXI:430692-431168 8.14e-01 100 chrXIII:504872-505086 4.83e-01 100 chrXII:899374-899651 3.18e-01 100 chrXIII:480493-480846 7.21e-11 16_[+2(8.17e-10)]_11_[-1(7.08e-08)]_\ 31 chrXII:459547-460174 9.04e-01 100 chrV:241941-242363 5.91e-01 100 chrXV:903955-904622 6.17e-01 100 chrXVI:576116-576328 1.52e-01 100 chrXII:65367-65819 1.87e-01 100 chrX:424386-424486 1.51e-05 4_[-1(1.85e-09)]_75 chrIV:1236880-1237080 3.64e-01 100 chrXIV:374726-375056 2.34e-04 32_[+1(1.08e-07)]_47 chrXIII:123617-123760 3.44e-01 100 chrIV:1095224-1095579 1.09e-05 33_[+2(1.69e-09)]_46 chrXV:28361-28837 5.12e-01 100 chrXII:1017795-1018271 9.68e-01 100 chrIV:541263-541784 3.45e-01 100 chrV:491002-491448 3.07e-01 100 chrXIII:220236-220712 8.01e-01 100 chrXVI:819343-819755 8.84e-13 34_[+1(7.57e-11)]_12_[-2(6.20e-09)]_\ 12 chrXIV:63307-63783 7.14e-01 100 chrXIII:24051-24527 5.06e-01 100 chrVII:544452-544797 9.97e-09 42_[+3(2.12e-11)]_28 chrXI:616068-616544 3.71e-01 100 chrXI:326137-327390 1.79e-01 100 chrVIII:120279-120549 6.83e-02 100 chrV:363508-363984 7.56e-01 100 chrVII:206191-206577 3.87e-01 100 chrXII:953129-953347 5.02e-01 100 chrV:66967-67138 8.64e-01 100 chrVI:83949-84324 5.83e-01 100 chrX:422820-422920 4.68e-08 35_[+1(9.64e-07)]_11_[-2(1.24e-08)]_\ 12 chrIII:56679-57155 9.95e-01 100 chrV:225425-225697 3.86e-01 100 chrV:269274-269449 6.74e-01 100 chrXIII:362933-363216 1.73e-03 41_[-3(3.69e-05)]_4_[-2(5.52e-05)]_\ 4 chrIX:257683-258159 6.90e-01 100 chrV:492231-492608 8.75e-06 29_[-1(5.58e-09)]_50 chrXIV:771890-772404 5.45e-01 100 chrII:410144-410620 2.88e-01 100 chrXI:617793-617991 9.62e-01 100 chrXVI:842937-843185 9.55e-01 100 chrX:90831-90931 9.13e-01 100 chrII:228899-229375 8.25e-02 100 chrII:135964-136261 3.70e-01 100 chrVIII:236414-236890 9.40e-01 100 chrV:364193-364518 7.50e-01 100 chrII:395668-396144 5.30e-01 100 chrVI:101247-101535 4.18e-06 39_[+1(4.77e-07)]_40 chrXII:374200-374539 1.19e-09 40_[+1(5.58e-09)]_11_[-2(8.17e-08)]_\ 7 chrVII:440547-440995 4.07e-10 9_[+2(1.69e-09)]_30_[-1(2.16e-07)]_\ 19 chrXII:930842-931008 9.44e-01 100 chrVII:541703-542083 1.43e-16 8_[-3(8.16e-16)]_4_[-2(9.92e-09)]_\ 37 chrIV:915504-916258 9.56e-01 100 chrXII:92429-92707 1.34e-05 34_[+1(4.77e-07)]_45 chrX:652167-652267 7.25e-01 100 chrV:81225-81701 3.10e-01 100 chrIV:1080625-1080893 7.17e-01 100 chrXV:380690-381001 6.41e-01 100 chrVII:779472-779867 5.16e-05 32_[-2(4.72e-08)]_47 chrIV:117938-118090 1.15e-01 51_[-3(7.84e-05)]_19 chrXV:605394-605870 8.63e-01 100 chrII:168769-169095 6.78e-01 100 chrXVI:769135-769475 5.11e-07 21_[-1(3.17e-08)]_58 chrXIII:19808-20284 3.41e-01 100 chrXIV:722504-722980 9.43e-01 100 chrIV:437650-437937 4.45e-07 33_[+1(1.54e-11)]_46 chrVIII:531477-531769 4.32e-01 100 chrIV:929578-930054 9.61e-01 100 chrIX:388586-388960 8.96e-01 100 chrXVI:404873-405795 5.20e-01 100 chrIII:142610-142935 8.95e-04 23_[-1(5.18e-07)]_56 chrIV:1302013-1302489 4.40e-01 100 chrV:461758-462234 5.71e-01 100 chrVI:131280-131620 3.31e-01 100 chrXV:391553-391966 9.04e-01 100 chrXV:623897-624373 8.58e-01 100 chrV:81510-81986 3.62e-01 100 chrV:283611-284087 3.04e-01 100 chrXIII:253353-253574 7.99e-01 100 chrXVI:532063-532539 9.81e-01 100 chrXIV:392350-392735 9.93e-01 100 chrXVI:745571-746047 4.38e-01 100 chrXV:1027899-1028427 8.38e-01 100 chrX:227686-227786 6.63e-01 100 chrV:131015-131284 1.70e-09 22_[+3(1.07e-12)]_48 chrXV:282012-282326 2.53e-08 49_[+1(5.18e-07)]_9_[-2(2.13e-08)] chrVII:989745-990404 8.72e-01 100 chrXII:814615-815091 7.41e-01 100 chrVI:31002-31534 9.74e-01 100 chrIX:317891-318367 1.70e-02 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************