Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.012059
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.055373
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.070414
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.012775
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.065816
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background
Finished invoke:
  name: bg  status: 0  time: 0.010867
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 941.886852
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 152.522661
Invoking:
  centrimo -seqlen 344 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.325142
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 1.550813
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background -primary RNSSCTYWACCVACTGGGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.964255
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background -primary SGGRRTCGAACCSVKGAYCTY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.799546
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background -primary AMARSSKSMYRTGMTARCCRTTACACTAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.688994
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background -primary CCRTRCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.575627
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.498587
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background -primary GCCWTAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.556144
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background -primary AARAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.648096
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background -primary AGATCGKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.430524
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background -primary CGSTCTCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.472956
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background -primary CAASGATG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.460009
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background -primary TAATCAKA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.447133
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background -primary GCGCAAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.530023
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background -primary GTGGSGTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.490182
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background -primary AAAGCRTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.466571
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background -primary ATGGTCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.497979
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background -primary ATTTCSTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo16  status: 0  time: 0.40202
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background --motif RNSSCTYWACCVACTGGGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.443374
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background --motif SGGRRTCGAACCSVKGAYCTY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.444057
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background --motif AMARSSKSMYRTGMTARCCRTTACACTAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.457592
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background --motif CCRTRCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.254298
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.254046
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background --motif GCCWTAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.253335
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background --motif AARAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.222042
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background --motif AGATCGKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.270722
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background --motif CGSTCTCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.253488
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background --motif CAASGATG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.253919
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background --motif TAATCAKA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.348273
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background --motif GCGCAAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.333241
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background --motif GTGGSGTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.253603
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background --motif AAAGCRTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.29988
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background --motif ATGGTCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.249541
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/background --motif ATTTCSTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/RM11-1A--PHD1.fa
Finished invoke:
  name: fimo16  status: 0  time: 0.253108
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PHD1/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.355691
Done