Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.037236 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.062598 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.074699 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.02897 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background Finished invoke: name: bg status: 0 time: 0.015336 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 552.771008 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/seqs-shuffled Finished invoke: name: dreme status: 0 time: 71.682876 Invoking: centrimo -seqlen 336 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.216423 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.637254 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary GNNSSCYYTAMCMACTRVGCCAHVNRVSCW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.47936 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary AATCRKRAGRTCMBSGGTTCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.426079 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary WWWWWACAYCCRTACATY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.376132 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary CAACTKGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.292853 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary BTAAGGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.28208 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.226568 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.251553 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.293818 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary CACGGYG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.495988 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary ATCTTYTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.26966 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary ACGCSAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.282807 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary RAAAAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.270429 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary CCAASAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.250061 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary AACACSCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.220639 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary ATCKTGAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.240042 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary ACTGAGCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.232459 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary AAGCGWGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 0.457823 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_18 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary GGCSCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo18 status: 0 time: 0.274444 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_19 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary ACACTATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo19 status: 0 time: 0.262534 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_20 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary AGACCWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo20 status: 0 time: 0.277128 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/spamo_out_21 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background -primary GGRGATCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml Finished invoke: name: spamo21 status: 0 time: 0.23483 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif GNNSSCYYTAMCMACTRVGCCAHVNRVSCW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo1 status: 0 time: 0.211283 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif AATCRKRAGRTCMBSGGTTCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo2 status: 0 time: 0.195398 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif WWWWWACAYCCRTACATY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo3 status: 0 time: 0.21935 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif CAACTKGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo4 status: 0 time: 0.109464 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif BTAAGGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo5 status: 0 time: 0.143559 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo6 status: 0 time: 0.112307 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo7 status: 0 time: 0.131959 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo8 status: 0 time: 0.120099 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif CACGGYG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo9 status: 0 time: 0.110194 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif ATCTTYTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo10 status: 0 time: 0.126019 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif ACGCSAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo11 status: 0 time: 0.137948 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif RAAAAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo12 status: 0 time: 0.133514 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif CCAASAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo13 status: 0 time: 0.126053 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif AACACSCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo14 status: 0 time: 0.335611 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif ATCKTGAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo15 status: 0 time: 0.17023 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif ACTGAGCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo16 status: 0 time: 0.11565 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif AAGCGWGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo17 status: 0 time: 0.131668 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_18 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif GGCSCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo18 status: 0 time: 0.097549 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_19 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif ACACTATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo19 status: 0 time: 0.111872 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_20 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif AGACCWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo20 status: 0 time: 0.104057 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/fimo_out_21 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/background --motif GGRGATCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/RM11-1A--PDR8.fa Finished invoke: name: fimo21 status: 0 time: 0.108305 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR8/summary.tsv Finished invoke: name: summary status: 0 time: 0.215291 Done