Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.011862 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.055756 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.069524 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.011453 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background Finished invoke: name: bg status: 0 time: 0.00982 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 614.842517 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/seqs-shuffled Finished invoke: name: dreme status: 0 time: 73.355478 Invoking: centrimo -seqlen 430 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.181018 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.4462 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -primary GRRTCGAACCSVKGAYCTYMHGRTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.540753 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -primary DTGGCYBAGTKGKTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.508346 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -primary ARATGTAYGGRTGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.406678 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -primary CKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.237524 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -primary GCCTTAMC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.266571 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -primary CCGYGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.270388 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -primary ACCAYTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.304073 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -primary AMACCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.268232 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -primary AAAAAAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.460289 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -primary ATCKTGAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.262527 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -primary GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.25915 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.272789 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -primary RGCCCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.268091 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -primary AACCCYG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.24821 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -primary GWGCTAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.23678 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -primary AAAGCGWG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.222183 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -primary AGAAGWT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 0.265984 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/spamo_out_18 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -primary CGTMTGAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: spamo18 status: 0 time: 0.255055 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/spamo_out_19 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background -primary CAGTCTKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml Finished invoke: name: spamo19 status: 0 time: 0.216877 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background --motif GRRTCGAACCSVKGAYCTYMHGRTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa Finished invoke: name: fimo1 status: 0 time: 0.203652 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background --motif DTGGCYBAGTKGKTWRAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa Finished invoke: name: fimo2 status: 0 time: 0.196366 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background --motif ARATGTAYGGRTGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa Finished invoke: name: fimo3 status: 0 time: 0.191765 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background --motif CKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa Finished invoke: name: fimo4 status: 0 time: 0.110676 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background --motif GCCTTAMC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa Finished invoke: name: fimo5 status: 0 time: 0.108444 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background --motif CCGYGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa Finished invoke: name: fimo6 status: 0 time: 0.109106 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background --motif ACCAYTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa Finished invoke: name: fimo7 status: 0 time: 0.104632 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background --motif AMACCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa Finished invoke: name: fimo8 status: 0 time: 0.104528 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background --motif AAAAAAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa Finished invoke: name: fimo9 status: 0 time: 0.091015 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background --motif ATCKTGAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa Finished invoke: name: fimo10 status: 0 time: 0.104821 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background --motif GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa Finished invoke: name: fimo11 status: 0 time: 0.103448 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa Finished invoke: name: fimo12 status: 0 time: 0.106314 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background --motif RGCCCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa Finished invoke: name: fimo13 status: 0 time: 0.105835 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background --motif AACCCYG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa Finished invoke: name: fimo14 status: 0 time: 0.106372 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background --motif GWGCTAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa Finished invoke: name: fimo15 status: 0 time: 0.106231 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background --motif AAAGCGWG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa Finished invoke: name: fimo16 status: 0 time: 0.105098 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background --motif AGAAGWT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa Finished invoke: name: fimo17 status: 0 time: 0.090882 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/fimo_out_18 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background --motif CGTMTGAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa Finished invoke: name: fimo18 status: 0 time: 0.113802 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/fimo_out_19 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/background --motif CAGTCTKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/RM11-1A--PDR3.fa Finished invoke: name: fimo19 status: 0 time: 0.106395 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--PDR3/summary.tsv Finished invoke: name: summary status: 0 time: 0.171576 Done