Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.036763
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.064084
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.077188
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.012881
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.074186
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background
Finished invoke:
  name: bg  status: 0  time: 0.014028
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 939.418532
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 75.686148
Invoking:
  centrimo -seqlen 356 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.21751
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.486142
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background -primary GGRATCGAACCSVKGAYCTYMYSRTTR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.44527
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background -primary NBDTGGCBYAGTKGKTWRRGSSNHC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.596539
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background -primary WACAYCCRTACAYY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.408677
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background -primary SAAGAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.366822
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background -primary CTTAAYCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.270799
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background -primary GCGCYAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.242915
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background -primary AKATCGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.251958
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background -primary CACCGTGS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.233409
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background -primary GGCAACGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.254474
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background -primary ARAAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.317951
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background -primary CCAACWGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.213549
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background -primary CTTGCGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.245443
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background -primary CGCGTGSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.243269
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background --motif GGRATCGAACCSVKGAYCTYMYSRTTR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.222485
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background --motif NBDTGGCBYAGTKGKTWRRGSSNHC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.219696
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background --motif WACAYCCRTACAYY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.223469
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background --motif SAAGAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.107252
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background --motif CTTAAYCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.127781
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background --motif GCGCYAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.12645
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background --motif AKATCGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.124375
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background --motif CACCGTGS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.126452
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background --motif GGCAACGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.120196
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background --motif ARAAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.348111
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background --motif CCAACWGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.134143
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background --motif CTTGCGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.120987
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/background --motif CGCGTGSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/RM11-1A--NRG1.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.129937
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--NRG1/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.207614
Done