Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.013097 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.056305 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.07043 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.013178 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.06434 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background Finished invoke: name: bg status: 0 time: 0.011336 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 926.393432 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/seqs-shuffled Finished invoke: name: dreme status: 0 time: 82.385372 Invoking: centrimo -seqlen 364 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.186412 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.220514 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background -primary GRATCGAACCSVKGAYCY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.385625 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background -primary TWMCCACTRVRCCAH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.460814 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background -primary RRTGTAYGGRTGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.351023 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background -primary GTWGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.247375 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background -primary AAGARA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.296141 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background -primary ACACSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.270497 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background -primary CTCTMCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.206168 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background -primary CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.224553 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background -primary AAGGCGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.212686 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background -primary CACGCGAS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.224878 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background -primary CKTTGGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.225672 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background -primary CGCGCTWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.207262 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background -primary CGGCCAM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.199434 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background -primary TCTTCTGR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.203738 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background -primary CACGGTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.251862 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background -primary AGAYCGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.208696 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background --motif GRATCGAACCSVKGAYCY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa Finished invoke: name: fimo1 status: 0 time: 0.201588 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background --motif TWMCCACTRVRCCAH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa Finished invoke: name: fimo2 status: 0 time: 0.202041 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background --motif RRTGTAYGGRTGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa Finished invoke: name: fimo3 status: 0 time: 0.198006 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background --motif GTWGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa Finished invoke: name: fimo4 status: 0 time: 0.112857 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background --motif AAGARA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa Finished invoke: name: fimo5 status: 0 time: 0.09798 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background --motif ACACSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa Finished invoke: name: fimo6 status: 0 time: 0.097148 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background --motif CTCTMCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa Finished invoke: name: fimo7 status: 0 time: 0.113517 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background --motif CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa Finished invoke: name: fimo8 status: 0 time: 0.111717 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background --motif AAGGCGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa Finished invoke: name: fimo9 status: 0 time: 0.113543 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background --motif CACGCGAS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa Finished invoke: name: fimo10 status: 0 time: 0.113527 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background --motif CKTTGGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa Finished invoke: name: fimo11 status: 0 time: 0.113709 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background --motif CGCGCTWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa Finished invoke: name: fimo12 status: 0 time: 0.112482 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background --motif CGGCCAM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa Finished invoke: name: fimo13 status: 0 time: 0.111969 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background --motif TCTTCTGR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa Finished invoke: name: fimo14 status: 0 time: 0.112871 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background --motif CACGGTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa Finished invoke: name: fimo15 status: 0 time: 0.111441 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/background --motif AGAYCGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/RM11-1A--MSS11.fa Finished invoke: name: fimo16 status: 0 time: 0.113803 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MSS11/summary.tsv Finished invoke: name: summary status: 0 time: 0.161915 Done