******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MOT3/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrXII:448467-448891 1.0000 100 chrXII:899335-899642 1.0000 100 chrI:78503-78899 1.0000 100 chrXV:678883-679155 1.0000 100 chrXVI:718380-719018 1.0000 100 chrXV:216292-216664 1.0000 100 chrVI:210512-210863 1.0000 100 chrIII:229588-229984 1.0000 100 chrXIV:230301-230697 1.0000 100 chrXIII:915011-915305 1.0000 100 chrVII:366119-366595 1.0000 100 chrXII:806046-806528 1.0000 100 chrVIII:237738-238096 1.0000 100 chrVII:110441-110825 1.0000 100 chrII:304822-305218 1.0000 100 chrXI:578800-579202 1.0000 100 chrXVI:642626-642803 1.0000 100 chrVII:779447-779828 1.0000 100 chrX:620438-620538 1.0000 100 chrX:75400-75500 1.0000 100 chrX:74074-74174 1.0000 100 chrV:423134-423445 1.0000 100 chrXIII:379200-379575 1.0000 100 chrV:78294-78982 1.0000 100 chrXIV:413771-414167 1.0000 100 chrXIII:372336-372616 1.0000 100 chrXII:371076-371472 1.0000 100 chrXIV:63919-64129 1.0000 100 chrX:348893-348993 1.0000 100 chrXIII:887296-887692 1.0000 100 chrIV:230404-230575 1.0000 100 chrXII:592411-592773 1.0000 100 chrXII:857041-857437 1.0000 100 chrVII:661575-661916 1.0000 100 chrVII:310545-310870 1.0000 100 chrIV:1278636-1279032 1.0000 100 chrXII:731967-732276 1.0000 100 chrXIII:220187-220583 1.0000 100 chrXV:779733-780999 1.0000 100 chrIII:315543-315939 1.0000 100 chrXII:710652-710883 1.0000 100 chrIX:316897-317229 1.0000 100 chrV:117751-118257 1.0000 100 chrVI:221792-222021 1.0000 100 chrIX:388272-388475 1.0000 100 chrV:441834-442591 1.0000 100 chrX:190079-190179 1.0000 100 chrXIV:282631-283027 1.0000 100 chrVIII:74995-75349 1.0000 100 chrXI:364774-365142 1.0000 100 chrVII:277930-278208 1.0000 100 chrXV:228171-228509 1.0000 100 chrXV:505841-506237 1.0000 100 chrIV:1489109-1489877 1.0000 100 chrXI:258658-258951 1.0000 100 chrXVI:586577-586973 1.0000 100 chrXII:636838-637519 1.0000 100 chrVII:555375-555661 1.0000 100 chrXIII:891275-891671 1.0000 100 chrVII:185584-185933 1.0000 100 chrXII:806001-806528 1.0000 100 chrXVI:173246-173892 1.0000 100 chrIV:217258-217430 1.0000 100 chrXVI:794566-794752 1.0000 100 chrIV:1175712-1176012 1.0000 100 chrII:332360-332698 1.0000 100 chrIX:316170-316569 1.0000 100 chrXV:854492-854888 1.0000 100 chrVII:610999-611395 1.0000 100 chrXI:695-1091 1.0000 100 chrXI:261489-261687 1.0000 100 chrVII:319722-319984 1.0000 100 chrXIII:388366-388560 1.0000 100 chrIV:1490112-1490373 1.0000 100 chrVIII:35211-36031 1.0000 100 chrVII:738959-739330 1.0000 100 chrXIII:747735-748136 1.0000 100 chrIX:427195-427847 1.0000 100 chrVII:534830-535172 1.0000 100 chrXVI:795628-795850 1.0000 100 chrX:415854-415954 1.0000 100 chrXII:639612-640008 1.0000 100 chrIII:295314-295684 1.0000 100 chrXIII:223095-223219 1.0000 100 chrXV:832367-832734 1.0000 100 chrXII:838569-839093 1.0000 100 chrVI:220362-220758 1.0000 100 chrIX:255399-255795 1.0000 100 chrI:71793-72966 1.0000 100 chrXII:424146-424381 1.0000 100 chrXVI:406223-406509 1.0000 100 chrXIV:234259-234655 1.0000 100 chrXIII:550510-550906 1.0000 100 chrVIII:34505-35098 1.0000 100 chrV:396790-397186 1.0000 100 chrIX:325718-326102 1.0000 100 chrII:604754-604977 1.0000 100 chrXI:334364-334525 1.0000 100 chrV:152102-152498 1.0000 100 chrXII:704339-704593 1.0000 100 chrIII:149754-150103 1.0000 100 chrIV:568723-569164 1.0000 100 chrX:139198-139298 1.0000 100 chrXVI:280675-281784 1.0000 100 chrVII:364142-364538 1.0000 100 chrXII:369335-370320 1.0000 100 chrVII:987363-987645 1.0000 100 chrIV:1401505-1401901 1.0000 100 chrIX:256697-257093 1.0000 100 chrXII:39840-40236 1.0000 100 chrXIII:289355-289751 1.0000 100 chrXIII:259025-259406 1.0000 100 chrXIII:195941-196324 1.0000 100 chrX:227750-227850 1.0000 100 chrXVI:880183-880533 1.0000 100 chrVII:56627-57023 1.0000 100 chrVII:557021-557417 1.0000 100 chrIX:129798-130194 1.0000 100 chrVII:328428-328829 1.0000 100 chrI:182931-183031 1.0000 100 chrX:424317-424417 1.0000 100 chrXIV:303273-303508 1.0000 100 chrII:301379-301645 1.0000 100 chrII:60887-61208 1.0000 100 chrIV:992696-993029 1.0000 100 chrXII:793744-794234 1.0000 100 chrXII:951638-951801 1.0000 100 chrII:406602-406998 1.0000 100 chrV:424910-425198 1.0000 100 chrXIV:302812-303265 1.0000 100 chrX:541398-541498 1.0000 100 chrI:182418-182634 1.0000 100 chrVIII:121498-121664 1.0000 100 chrVII:481312-482739 1.0000 100 chrIV:411299-411608 1.0000 100 chrXVI:587193-587589 1.0000 100 chrV:306419-306815 1.0000 100 chrXVI:435766-436142 1.0000 100 chrXV:796989-797299 1.0000 100 chrX:744994-745094 1.0000 100 chrIX:394663-395144 1.0000 100 chrVI:226597-226912 1.0000 100 chrII:89005-89401 1.0000 100 chrV:140514-140842 1.0000 100 chrVIII:555824-556220 1.0000 100 chrXII:460372-460830 1.0000 100 chrVII:323747-324121 1.0000 100 chrXII:263587-263906 1.0000 100 chrXI:431967-432363 1.0000 100 chrXIV:569773-570004 1.0000 100 chrII:168511-168907 1.0000 100 chrVII:55800-56196 1.0000 100 chrII:167960-168146 1.0000 100 chrVII:845473-845865 1.0000 100 chrXI:518864-519229 1.0000 100 chrXVI:821837-822245 1.0000 100 chrVII:310985-312167 1.0000 100 chrV:86380-86815 1.0000 100 chrXVI:303341-303666 1.0000 100 chrIII:178381-178630 1.0000 100 chrXII:241665-241979 1.0000 100 chrIV:437626-437965 1.0000 100 chrII:45050-45322 1.0000 100 chrXVI:210083-210417 1.0000 100 chrXIII:626603-626912 1.0000 100 chrXII:232098-234240 1.0000 100 chrVIII:103942-104186 1.0000 100 chrXV:520678-520877 1.0000 100 chrXV:226502-226837 1.0000 100 chrV:85112-86464 1.0000 100 chrVIII:382310-382706 1.0000 100 chrX:414808-414908 1.0000 100 chrIX:68265-68503 1.0000 100 chrXII:713181-713527 1.0000 100 chrIV:555765-556196 1.0000 100 chrII:397503-397899 1.0000 100 chrV:424753-425198 1.0000 100 chrXII:426964-427309 1.0000 100 chrXVI:302736-302935 1.0000 100 chrV:476110-476506 1.0000 100 chrXI:308036-308378 1.0000 100 chrIV:1075329-1075705 1.0000 100 chrXIV:26147-26543 1.0000 100 chrXIII:296821-298851 1.0000 100 chrII:256421-256570 1.0000 100 chrVII:138323-138719 1.0000 100 chrIV:1270061-1270397 1.0000 100 chrV:138508-138907 1.0000 100 chrIII:382-502 1.0000 100 chrIII:82376-82676 1.0000 100 chrVI:55192-55588 1.0000 100 chrVII:401441-401629 1.0000 100 chrXIII:556167-556563 1.0000 100 chrXIII:306126-306446 1.0000 100 chrX:526226-526326 1.0000 100 chrVII:1004071-1004390 1.0000 100 chrX:172887-172986 1.0000 99 chrVIII:226344-226740 1.0000 100 chrXV:1028736-1029059 1.0000 100 chrXII:253711-254107 1.0000 100 chrVI:82832-83059 1.0000 100 chrVIII:381452-382076 1.0000 100 chrIX:324201-324402 1.0000 100 chrXI:490790-491118 1.0000 100 chrIII:142590-142934 1.0000 100 chrV:69060-69366 1.0000 100 chrIV:449720-450116 1.0000 100 chrXV:87971-88367 1.0000 100 chrVI:31161-31557 1.0000 100 chrXI:162321-162710 1.0000 100 chrX:652056-652156 1.0000 100 chrII:306974-307370 1.0000 100 chrVIII:147921-148075 1.0000 100 chrIV:356658-356859 1.0000 100 chrIV:1013091-1013487 1.0000 100 chrXIII:226053-226449 1.0000 100 chrIV:1302034-1302430 1.0000 100 chrV:266272-266668 1.0000 100 chrXV:80607-80856 1.0000 100 chrV:141028-141361 1.0000 100 chrXII:257794-258190 1.0000 100 chrXI:558803-559118 1.0000 100 chrXII:638735-638921 1.0000 100 chrIX:370245-370601 1.0000 100 chrIII:162830-163226 1.0000 100 chrXV:505151-505459 1.0000 100 chrIII:227774-228177 1.0000 100 chrXV:110819-111157 1.0000 100 chrVII:56417-56813 1.0000 100 chrVIII:466826-467133 1.0000 100 chrVII:149155-149482 1.0000 100 chrVII:774186-774542 1.0000 100 chrV:135292-135639 1.0000 100 chrIV:308033-308340 1.0000 100 chrIV:541260-541818 1.0000 100 chrXIV:577075-577471 1.0000 100 chrVII:541697-542118 1.0000 100 chrXIV:575276-575485 1.0000 100 chrXV:353935-354279 1.0000 100 chrXV:908689-908841 1.0000 100 chrV:491074-491388 1.0000 100 chrIII:107507-107903 1.0000 100 chrV:131012-131324 1.0000 100 chrVII:122133-122503 1.0000 100 chrXII:198770-199700 1.0000 100 chrIV:217706-218102 1.0000 100 chrII:680356-680695 1.0000 100 chrXIII:352114-352455 1.0000 100 chrXIV:499747-500820 1.0000 100 chrI:142809-143091 1.0000 100 chrV:267820-268216 1.0000 100 chrII:592927-593238 1.0000 100 chrIII:107230-107622 1.0000 100 chrV:408505-408901 1.0000 100 chrXV:866605-866905 1.0000 100 chrXIV:568023-568237 1.0000 100 chrXII:281899-282295 1.0000 100 chrXIV:107756-108152 1.0000 100 chrXV:340153-340535 1.0000 100 chrIX:99673-99988 1.0000 100 chrV:99962-100328 1.0000 100 chrVII:857264-857641 1.0000 100 chrVII:254162-254529 1.0000 100 chrX:617746-617846 1.0000 100 chrVII:557615-558011 1.0000 100 chrIV:331211-331607 1.0000 100 chrV:434455-434772 1.0000 100 chrIV:44137-44533 1.0000 100 chrXV:444702-445658 1.0000 100 chrVIII:388784-389028 1.0000 100 chrXVI:746138-746534 1.0000 100 chrIV:1161613-1161912 1.0000 100 chrX:374231-374331 1.0000 100 chrXIV:568196-568592 1.0000 100 chrVIII:451278-452958 1.0000 100 chrVIII:17124-17321 1.0000 100 chrXI:513238-513559 1.0000 100 chrIX:248676-249050 1.0000 100 chrII:393515-393714 1.0000 100 chrXVI:744132-744506 1.0000 100 chrIV:1359443-1359779 1.0000 100 chrIV:83381-83743 1.0000 100 chrX:391886-391986 1.0000 100 chrVII:545488-545682 1.0000 100 chrVIII:146066-146448 1.0000 100 chrXVI:699984-700332 1.0000 100 chrV:438563-438877 1.0000 100 chrIV:1352239-1352677 1.0000 100 chrVII:422914-423332 1.0000 100 chrV:61195-62128 1.0000 100 chrIV:599851-600142 1.0000 100 chrXIV:525053-525194 1.0000 100 chrXII:1012166-1012331 1.0000 100 chrVII:672582-672978 1.0000 100 chrIII:177403-177600 1.0000 100 chrX:622513-622613 1.0000 100 chrVIII:75767-75887 1.0000 100 chrXIII:500350-500566 1.0000 100 chrVII:702913-703253 1.0000 100 chrXV:384752-384997 1.0000 100 chrII:477066-477458 1.0000 100 chrXII:201904-202398 1.0000 100 chrXV:867646-868042 1.0000 100 chrVI:31973-32180 1.0000 100 chrXII:645799-646195 1.0000 100 chrXVI:214925-215131 1.0000 100 chrIV:130585-130926 1.0000 100 chrVII:609451-610076 1.0000 100 chrVII:399305-399484 1.0000 100 chrXII:628204-628627 1.0000 100 chrII:681102-681502 1.0000 100 chrX:531662-531762 1.0000 100 chrXVI:75589-75701 1.0000 100 chrII:645013-645354 1.0000 100 chrX:120616-120716 1.0000 100 chrIV:1017060-1017456 1.0000 100 chrV:269211-269607 1.0000 100 chrXV:253124-253520 1.0000 100 chrX:76205-76305 1.0000 100 chrI:70455-70851 1.0000 100 chrII:405717-406142 1.0000 100 chrXIV:495235-495549 1.0000 100 chrV:504375-504771 1.0000 100 chrXV:445888-446141 1.0000 100 chrVII:611715-612111 1.0000 100 chrII:604144-604449 1.0000 100 chrIV:619853-620185 1.0000 100 chrXIII:91856-92067 1.0000 100 chrV:475909-476305 1.0000 100 chrXII:962866-963232 1.0000 100 chrVII:399736-399908 1.0000 100 chrX:122348-122448 1.0000 100 chrIII:177170-177409 1.0000 100 chrX:663831-663931 1.0000 100 chrXV:678034-678430 1.0000 100 chrII:45986-46162 1.0000 100 chrII:606680-607076 1.0000 100 chrXII:722817-723213 1.0000 100 chrVIII:132939-133113 1.0000 100 chrXI:102342-102738 1.0000 100 chrXVI:451356-451752 1.0000 100 chrIII:123445-123797 1.0000 100 chrXIV:413557-413953 1.0000 100 chrIV:1305472-1305833 1.0000 100 chrV:435646-435978 1.0000 100 chrVI:162060-162389 1.0000 100 chrXIII:162135-162531 1.0000 100 chrVI:64157-64553 1.0000 100 chrIV:835817-836111 1.0000 100 chrXVI:404978-405699 1.0000 100 chrVII:544461-544821 1.0000 100 chrXIV:759353-759749 1.0000 100 chrII:45604-46000 1.0000 100 chrXV:758984-759549 1.0000 100 chrIV:1239454-1239850 1.0000 100 chrIV:392540-392936 1.0000 100 chrXII:795160-795321 1.0000 100 chrXII:1028273-1028535 1.0000 100 chrIX:138411-138964 1.0000 100 chrVI:157828-158163 1.0000 100 chrXI:142498-142894 1.0000 100 chrXIV:174325-174538 1.0000 100 chrIX:254292-254500 1.0000 100 chrIV:410217-410568 1.0000 100 chrIV:1402227-1402340 1.0000 100 chrVII:1050208-1050505 1.0000 100 chrV:122074-122470 1.0000 100 chrIX:257406-257648 1.0000 100 chrXII:498942-499576 1.0000 100 chrII:592271-592667 1.0000 100 chrXI:38991-39193 1.0000 100 chrV:42151-42423 1.0000 100 chrXV:968171-968329 1.0000 100 chrX:354081-354181 1.0000 100 chrXII:712316-712712 1.0000 100 chrIV:525734-526130 1.0000 100 chrVI:82609-82813 1.0000 100 chrXII:949468-949864 1.0000 100 chrIV:601300-601529 1.0000 100 chrX:224273-224373 1.0000 100 chrXIII:861198-861396 1.0000 100 chrX:606347-606447 1.0000 100 chrV:431014-431521 1.0000 100 chrX:115824-115924 1.0000 100 chrIX:386670-386913 1.0000 100 chrX:703293-703393 1.0000 100 chrIX:197432-197760 1.0000 100 chrIV:465176-465511 1.0000 100 chrXV:29331-29727 1.0000 100 chrIV:118329-118725 1.0000 100 chrV:52866-53262 1.0000 100 chrIV:1256905-1257257 1.0000 100 chrXV:912073-912469 1.0000 100 chrI:35838-36234 1.0000 100 chrV:151897-152293 1.0000 100 chrIX:380545-380941 1.0000 100 chrIV:667886-668254 1.0000 100 chrVII:440565-440991 1.0000 100 chrXI:432576-432972 1.0000 100 chrII:642910-643249 1.0000 100 chrVII:878578-878976 1.0000 100 chrVII:438609-438878 1.0000 100 chrIX:317246-317424 1.0000 100 chrIX:97271-97458 1.0000 100 chrXII:793744-794237 1.0000 100 chrXII:784174-784558 1.0000 100 chrXII:897752-898010 1.0000 100 chrIV:519622-519926 1.0000 100 chrXII:263724-264120 1.0000 100 chrXVI:188654-188920 1.0000 100 chrVII:921076-921472 1.0000 100 chrIV:1402814-1403373 1.0000 100 chrXII:374189-374566 1.0000 100 chrXIII:290627-290996 1.0000 100 chrVIII:115966-116348 1.0000 100 chrXV:977834-978230 1.0000 100 chrVII:431-827 1.0000 100 chrXII:506963-507359 1.0000 100 chrX:651323-651423 1.0000 100 chrI:151442-151838 1.0000 100 chrII:681497-681848 1.0000 100 chrIV:579109-579320 1.0000 100 chrVII:700496-701212 1.0000 100 chrX:197182-197282 1.0000 100 chrXII:922152-922499 1.0000 100 chrIV:117212-117556 1.0000 100 chrXIII:507951-508347 1.0000 100 chrXIV:664477-664873 1.0000 100 chrXVI:689402-689812 1.0000 100 chrXII:952370-952766 1.0000 100 chrIX:177659-177954 1.0000 100 chrXVI:95552-95948 1.0000 100 chrII:413875-414271 1.0000 100 chrIV:769627-770023 1.0000 100 chrVII:823317-823689 1.0000 100 chrVII:876230-876598 1.0000 100 chrIII:30600-30797 1.0000 100 chrX:121860-121960 1.0000 100 chrXII:794173-795164 1.0000 100 chrVIII:382952-383294 1.0000 100 chrXI:259215-259611 1.0000 100 chrVII:788367-788694 1.0000 100 chrXII:932115-932455 1.0000 100 chrVII:439528-439826 1.0000 100 chrII:556648-557044 1.0000 100 chrXV:288025-288381 1.0000 100 chrXVI:810569-810828 1.0000 100 chrX:608473-608573 1.0000 100 chrXI:552031-552427 1.0000 100 chrIV:117829-118225 1.0000 100 chrVII:807292-807688 1.0000 100 chrXV:680440-680836 1.0000 100 chrX:355210-355310 1.0000 100 chrXV:854057-854308 1.0000 100 chrXI:355356-355709 1.0000 100 chrII:235430-235826 1.0000 100 chrXII:366081-366451 1.0000 100 chrI:166138-166466 1.0000 100 chrXI:458445-458789 1.0000 100 chrVII:365121-365315 1.0000 100 chrIV:976168-976478 1.0000 100 chrXV:160293-160763 1.0000 100 chrX:608676-608776 1.0000 100 chrXV:159253-160169 1.0000 100 chrXV:409520-409916 1.0000 100 chrXIV:351983-352291 1.0000 100 chrXVI:134898-135294 1.0000 100 chrVIII:475579-475936 1.0000 100 chrXVI:769096-769485 1.0000 100 chrIII:163504-163846 1.0000 100 chrXV:92977-93488 1.0000 100 chrXIII:753782-754178 1.0000 100 chrXV:900911-901307 1.0000 100 chrVI:101207-101556 1.0000 100 chrXII:838113-838582 1.0000 100 chrXII:253912-254308 1.0000 100 chrX:90107-90207 1.0000 100 chrVIII:494521-494917 1.0000 100 chrXV:438478-438870 1.0000 100 chrV:225441-225681 1.0000 100 chrXV:282005-282347 1.0000 100 chrVII:727242-727437 1.0000 100 chrXV:254357-254753 1.0000 100 chrXV:571800-572129 1.0000 100 chrVII:648996-649310 1.0000 100 chrXII:839031-839218 1.0000 100 chrXVI:378700-378920 1.0000 100 chrXVI:55997-56435 1.0000 100 chrXI:326152-327584 1.0000 100 chrXII:856263-856392 1.0000 100 chrVII:533875-534271 1.0000 100 chrXV:87737-88133 1.0000 100 chrI:28532-28928 1.0000 100 chrXII:95470-95866 1.0000 100 chrXV:978836-979061 1.0000 100 chrIV:980821-981195 1.0000 100 chrXI:108788-109052 1.0000 100 chrXII:459511-460165 1.0000 100 chrII:88113-88553 1.0000 100 chrXII:809181-809577 1.0000 100 chrXII:875207-875594 1.0000 100 chrIII:229383-229779 1.0000 100 chrXII:734637-734977 1.0000 100 chrXV:725246-725642 1.0000 100 chrV:250239-250488 1.0000 100 chrXV:671081-671418 1.0000 100 chrXIV:715962-716608 1.0000 100 chrXV:619877-620273 1.0000 100 chrVIII:411075-411642 1.0000 100 chrIX:332886-333103 1.0000 100 chrXIV:88943-89753 1.0000 100 chrXIV:331995-332391 1.0000 100 chrXIII:267981-268282 1.0000 100 chrVIII:125961-126272 1.0000 100 chrV:305820-306169 1.0000 100 chrV:311858-312252 1.0000 100 chrIV:434077-434448 1.0000 100 chrV:53557-53878 1.0000 100 chrXIV:628429-628825 1.0000 100 chrIII:90827-91075 1.0000 100 chrXII:728302-728486 1.0000 100 chrIII:138627-138758 1.0000 100 chrXV:424230-424588 1.0000 100 chrV:492232-492602 1.0000 100 chrXIII:420458-420822 1.0000 100 chrXIV:519005-519145 1.0000 100 chrVIII:554505-554901 1.0000 100 chrXII:522998-523394 1.0000 100 chrXIII:754464-754694 1.0000 100 chrVI:95500-95814 1.0000 100 chrIV:520799-521134 1.0000 100 chrII:236621-237017 1.0000 100 chrVII:278528-278641 1.0000 100 chrXIII:507751-508147 1.0000 100 chrXIV:25941-26337 1.0000 100 chrV:77580-77835 1.0000 100 chrII:226933-227290 1.0000 100 chrXII:797009-797356 1.0000 100 chrV:469293-469644 1.0000 100 chrXI:159106-159502 1.0000 100 chrIV:538973-539187 1.0000 100 chrXIV:771878-772404 1.0000 100 chrVI:223329-223543 1.0000 100 chrXIII:762609-763005 1.0000 100 chrXIV:102551-102990 1.0000 100 chrIII:142000-142396 1.0000 100 chrXII:370471-370812 1.0000 100 chrV:487220-487555 1.0000 100 chrI:142229-142399 1.0000 100 chrV:23528-23878 1.0000 100 chrVII:766161-766480 1.0000 100 chrXI:46663-46966 1.0000 100 chrXV:391615-391903 1.0000 100 chrXI:164194-164336 1.0000 100 chrIV:1300971-1301284 1.0000 100 chrXV:900708-901104 1.0000 100 chrVII:648055-648451 1.0000 100 chrXV:407938-408118 1.0000 100 chrXIV:499726-500820 1.0000 100 chrXIII:551394-551768 1.0000 100 chrV:354765-355167 1.0000 100 chrXI:99649-100045 1.0000 100 chrVIII:505851-506158 1.0000 100 chrXII:1029869-1030265 1.0000 100 chrXV:29105-29501 1.0000 100 chrXVI:860210-860585 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MOT3/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MOT3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MOT3/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 566 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 56599 N= 566 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.294 C 0.206 G 0.206 T 0.294 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MOT3/background): A 0.306 C 0.194 G 0.194 T 0.306 ******************************************************************************** ******************************************************************************** MOTIF GGAATCGAACCSSKGWCCYYMHSVTKRMAA MEME-1 width = 30 sites = 76 llr = 1532 E-value = 2.6e-321 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAATCGAACCSSKGWCCYYMHSVTKRMAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:75:::aa::12135:::142141:5369 pos.-specific C :::2:8:::a8532:1663544322224:: probability G 8a32::a::::355711221:164133111 matrix T :::1a2::::21:3:3325423::65:12: bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * * ***** Relative 1.4 ** ******* * Entropy 1.2 ** ******* * * (29.1 bits) 0.9 *** ******* * ** * * 0.7 *** ******* * * ** * * 0.5 *** *********** **** ***** ** 0.2 ****************************** 0.0 ------------------------------ Multilevel GGAATCGAACCCGGGACCTCACGATTACAA consensus A GC T GCTATTTCTCTCG GGAT sequence G A A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAATCGAACCSSKGWCCYYMHSVTKRMAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXVI:860210-860585 - 62 2.64e-13 CGCAAGCCC GGAATCGAACCGGGGGCCCAACGATGGCAA CGTTGGATTT chrXV:282005-282347 - 68 2.64e-13 CCC GGAATCGAACCGGGGGCCCAACGATGGCAA CGTTGGATTT chrX:531662-531762 - 28 2.64e-13 GCGCAAGCCC GGAATCGAACCGGGGGCCCAACGATGGCAA CGTTGGATTT chrIV:83381-83743 - 66 2.64e-13 AGCCC GGAATCGAACCGGGGGCCCAACGATGGCAA CGTTGGATTT chrXV:226502-226837 + 3 2.64e-13 CC GGAATCGAACCGGGGGCCCAACGATGGCAA CGTTGGATTT chrVII:845473-845865 - 60 2.64e-13 GCGCAAGCCC GGAATCGAACCGGGGGCCCAACGATGGCAA CGTTGGATTT chrIV:992696-993029 - 50 2.64e-13 GCGCAAGCCC GGAATCGAACCGGGGGCCCAACGATGGCAA CGTTGGATTT chrIV:1017060-1017456 + 10 3.20e-13 CCGAAGCGG GGAGTCGAACCCCGGTCTCCACGGTGAGAA CGTGATGTGA chrIII:123445-123797 + 17 8.15e-13 GGGCGAGCCG GGACTCGAACCCGGGACCTCCCGCACCCTA AGCGAGAATC chrV:354765-355167 - 49 1.38e-12 TCCGATACGG GGAGTCGAACCCCGGTCTCCACGGTGAAAG CGTGATGTGA chrV:487220-487555 + 5 1.38e-12 ACGG GGAGTCGAACCCCGGTCTCCACGGTGAAAG CGTGATGTGA chrXIII:290627-290996 - 71 1.38e-12 . GGAGTCGAACCCCGGTCTCCACGGTGAAAG CGTGATGTGA chrII:645013-645354 - 65 1.38e-12 ATACGG GGAGTCGAACCCCGGTCTCCACGGTGAAAG CGTGATGTGA chrVII:541697-542118 - 24 1.38e-12 TCCGATACGG GGAGTCGAACCCCGGTCTCCACGGTGAAAG CGTGATGTGA chrVII:401441-401629 + 53 1.38e-12 TCCGATACGG GGAGTCGAACCCCGGTCTCCACGGTGAAAG CGTGATGTGA chrXVI:210083-210417 + 3 1.38e-12 GG GGAGTCGAACCCCGGTCTCCACGGTGAAAG CGTGATGTGA chrVII:328428-328829 - 36 1.38e-12 TCCGATACGG GGAGTCGAACCCCGGTCTCCACGGTGAAAG CGTGATGTGA chrV:311858-312252 + 29 1.95e-12 GGACGCAACC GGAATCGAACCGATGACCTCTTCCTTGCAA GGGAAGCGCG chrI:166138-166466 - 47 1.95e-12 GGACGCAACC GGAATCGAACCGATGACCTCTTCCTTGCAA GGGAAGCGCG chrXV:854057-854308 + 66 1.95e-12 GGACGCAACC GGAATCGAACCGATGACCTCTTCCTTGCAA GGGAA chrVII:876230-876598 - 62 2.23e-11 CCCTGTAGG GGGCTCGAACCCCTAACCTTATGATTAAGA GTCATACGCG chrV:435646-435978 + 1 2.23e-11 . GGGCTCGAACCCCTAACCTTATGATTAAGA GTCATACGCG chrIV:1352239-1352677 + 69 2.23e-11 GCCCTGTAGG GGGCTCGAACCCCTAACCTTATGATTAAGA GT chrVII:122133-122503 - 33 2.23e-11 GCCCTGTAGG GGGCTCGAACCCCTAACCTTATGATTAAGA GTCATACGCG chrV:135292-135639 + 21 2.23e-11 GCCCTGTAGG GGGCTCGAACCCCTAACCTTATGATTAAGA GTCATACGCG chrVII:185584-185933 + 17 2.23e-11 GCCCTGTAGG GGGCTCGAACCCCTAACCTTATGATTAAGA GTCATACGCG chrV:250239-250488 - 4 5.64e-11 GGTCCTACCC GGATTCGAACCGGGGTTGTCCGGATCAAAA CCG chrXII:448467-448891 + 32 5.64e-11 GGTCCTACCC GGATTCGAACCGGGGTTGTCCGGATCAAAA CCGAAAGTGA chrXVI:55997-56435 + 14 6.40e-11 GAAACGGACA GGAATTGAACCTGCAACCCTTCGATTGCAA TCTTATTCCG chrXIV:569773-570004 + 40 6.40e-11 GGTCTCTAGC GGGATCGAACCGCTGATCCCCGCGTTATTA GCACGGTGCC chrVII:738959-739330 - 61 6.40e-11 GGTCTCTAGC GGGATCGAACCGCTGATCCCCGCGTTATTA GCACGGTGCC chrX:355210-355310 - 2 7.25e-11 ACTCACGATG GGGGTCGAACCCATAATCTTCTGATTAGAA G chrII:405717-406142 - 30 7.25e-11 ACTCACGATG GGGGTCGAACCCATAATCTTCTGATTAGAA GTCAGACGCG chrXI:162321-162710 + 33 7.25e-11 ACTCACGATG GGGGTCGAACCCATAATCTTCTGATTAGAA GTCAGACGCG chrV:138508-138907 - 40 7.25e-11 ACTCACGATG GGGGTCGAACCCATAATCTTCTGATTAGAA GTCAGACGCG chrIV:568723-569164 - 20 7.25e-11 ACTCACGATG GGGGTCGAACCCATAATCTTCTGATTAGAA GTCAGACGCG chrXIII:747735-748136 + 18 7.25e-11 ACTCACGATG GGGGTCGAACCCATAATCTTCTGATTAGAA GTCAGACGCG chrX:197182-197282 + 44 8.21e-11 GGACGAGTCC GGAATCGAACCGGAGACCTCTCCCATGCTA AGGGAGCGCG chrIV:410217-410568 - 69 8.21e-11 CC GGAATCGAACCGGAGACCTCTCCCATGCTA AGGGAGCGCG chrVIII:146066-146448 + 46 8.21e-11 GGACGAGTCC GGAATCGAACCGGAGACCTCTCCCATGCTA AGGGAGCGCG chrVII:774186-774542 - 67 8.21e-11 GTCC GGAATCGAACCGGAGACCTCTCCCATGCTA AGGGAGCGCG chrXV:110819-111157 + 35 3.61e-10 GAGCGGTACG AGAATCGAACCCGTGTCCCCACCTTGGAAG GGTGGGATGA chrVII:779447-779828 - 60 3.61e-10 GAGCGGTACG AGAATCGAACCCGTGTCCCCACCTTGGAAG GGTGGGATGA chrIV:434077-434448 + 63 4.45e-10 GCTTCCAATC GGATTTGAACCGATGATCTCCACATTACTA GTGTGGCG chrVIII:115966-116348 + 11 4.45e-10 GCTTCCAATC GGATTTGAACCGATGATCTCCACATTACTA GTGTGGCGCC chrIII:295314-295684 - 67 4.45e-10 AATC GGATTTGAACCGATGATCTCCACATTACTA GTGTGGCGCC chrXII:374189-374566 - 60 8.11e-10 TTCCCCGCCA GGACTTGAACCTGGAATCTTCTGGTTCGTA GCCAGACGCC chrIV:619853-620185 + 11 8.11e-10 TTCCCCGCCA GGACTTGAACCTGGAATCTTCTGGTTCGTA GCCAGACGCC chrXV:340153-340535 + 16 8.11e-10 TTCCCCGCCA GGACTTGAACCTGGAATCTTCTGGTTCGTA GCCAGACGCC chrXII:793744-794237 - 9 1.30e-09 TCCGCGACGG GGAATTGAACCCCGATCTGGCACGCGACAA GCGCCCAT chrX:374231-374331 + 6 1.30e-09 GACGG GGAATTGAACCCCGATCTGGCACGCGACAA GCGCCCATTC chrIX:324201-324402 + 63 1.30e-09 TCCGCGACGG GGAATTGAACCCCGATCTGGCACGCGACAA GCGCCCAT chrX:541398-541498 - 49 1.30e-09 TCCGCGACGG GGAATTGAACCCCGATCTGGCACGCGACAA GCGCCCATTC chrXII:793744-794234 - 10 1.30e-09 TCCGCGACGG GGAATTGAACCCCGATCTGGCACGCGACAA GCGCCCATT chrXIII:420458-420822 + 9 2.21e-09 TTTCGCCC AGGATCGAACTGGGGACGTTCTGCGTGTTA AGCAGATGCC chrVII:823317-823689 - 62 2.21e-09 ATTTCGCCC AGGATCGAACTGGGGACGTTCTGCGTGTTA AGCAGATGCC chrV:438563-438877 - 63 2.21e-09 TTTCGCCC AGGATCGAACTGGGGACGTTCTGCGTGTTA AGCAGATGCC chrXIII:372336-372616 + 30 2.21e-09 GATTTCGCCC AGGATCGAACTGGGGACGTTCTGCGTGTTA AGCAGATGCC chrVIII:475579-475936 + 10 4.58e-09 TTCCAACCG AGGATCGAACTCGGGACCTTTGCCGTGTGA AGGCAACGTG chrIV:1075329-1075705 + 16 4.58e-09 GTTCCAACCG AGGATCGAACTCGGGACCTTTGCCGTGTGA AGGCAACGTG chrVII:319722-319984 - 9 4.58e-09 GCCATCTCCT AGAATCGAACCAGGGTTTCATCGGCCACAA CGATGTGT chrVII:110441-110825 + 53 4.58e-09 GCCATCTCCT AGAATCGAACCAGGGTTTCATCGGCCACAA CGATGTGTAC chrVIII:388784-389028 + 48 4.95e-09 GGGCGAGCTG GGAATTGAACCCAGGGCCTCTCGCATGCTT TGTCTTCCTG chrIV:1305472-1305833 - 70 1.09e-08 A GGACTCGAACCTGCGCGGGCCAAAGCCCAA AAGATTTCTA chrII:226933-227290 - 55 1.24e-08 GACAACTGCA GGACTCGAACCTGCGCGGGCAAAGCCCAAA AGATTTCTAA chrIV:980821-981195 + 27 1.24e-08 GACAACTGCA GGACTCGAACCTGCGCGGGCAAAGCCCAAA AGATTTCTAA chrVIII:132939-133113 + 61 1.24e-08 GACAACTGCA GGACTCGAACCTGCGCGGGCAAAGCCCAAA AGATTTCTAA chrIV:437626-437965 - 68 1.24e-08 GCA GGACTCGAACCTGCGCGGGCAAAGCCCAAA AGATTTCTAA chrI:182418-182634 + 57 1.24e-08 GACAACTGCA GGACTCGAACCTGCGCGGGCAAAGCCCAAA AGATTTCTAA chrXIII:259025-259406 + 4 1.24e-08 GCA GGACTCGAACCTGCGCGGGCAAAGCCCAAA AGATTTCTAA chrXVI:744132-744506 - 46 1.42e-08 GCCACCTGTC AGAATTGAACTAACGACCTTTGCATTACAA GTGCAACGCT chrVII:1004071-1004390 - 67 1.42e-08 TGTC AGAATTGAACTAACGACCTTTGCATTACAA GTGCAACGCT chrIV:1175712-1176012 - 49 2.75e-08 GCTCCAGGGG AGGTTCGAACTCTCGACCTTCAGATTATGA GACTGACGCT chrXIV:102551-102990 - 29 4.23e-08 GACCCCAGTG AGGGTTGAACTCACGATCTTGCGATTAACA GTCGCACGCC chrXVI:810569-810828 - 61 4.23e-08 GACCCCAGTG AGGGTTGAACTCACGATCTTGCGATTAACA GTCGCACGCC chrIV:519622-519926 - 62 1.30e-07 AAGGATGCG AGGTTCGAACTCGCGCGGACAACCGTCCAA CAGATCTTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAATCGAACCSSKGWCCYYMHSVTKRMAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:860210-860585 2.6e-13 61_[-1]_9 chrXV:282005-282347 2.6e-13 67_[-1]_3 chrX:531662-531762 2.6e-13 27_[-1]_43 chrIV:83381-83743 2.6e-13 65_[-1]_5 chrXV:226502-226837 2.6e-13 2_[+1]_68 chrVII:845473-845865 2.6e-13 59_[-1]_11 chrIV:992696-993029 2.6e-13 49_[-1]_21 chrIV:1017060-1017456 3.2e-13 9_[+1]_61 chrIII:123445-123797 8.2e-13 16_[+1]_54 chrV:354765-355167 1.4e-12 48_[-1]_22 chrV:487220-487555 1.4e-12 4_[+1]_66 chrXIII:290627-290996 1.4e-12 70_[-1] chrII:645013-645354 1.4e-12 64_[-1]_6 chrVII:541697-542118 1.4e-12 23_[-1]_47 chrVII:401441-401629 1.4e-12 52_[+1]_18 chrXVI:210083-210417 1.4e-12 2_[+1]_68 chrVII:328428-328829 1.4e-12 35_[-1]_35 chrV:311858-312252 1.9e-12 28_[+1]_42 chrI:166138-166466 1.9e-12 46_[-1]_24 chrXV:854057-854308 1.9e-12 65_[+1]_5 chrVII:876230-876598 2.2e-11 61_[-1]_9 chrV:435646-435978 2.2e-11 [+1]_70 chrIV:1352239-1352677 2.2e-11 68_[+1]_2 chrVII:122133-122503 2.2e-11 32_[-1]_38 chrV:135292-135639 2.2e-11 20_[+1]_50 chrVII:185584-185933 2.2e-11 16_[+1]_54 chrV:250239-250488 5.6e-11 3_[-1]_67 chrXII:448467-448891 5.6e-11 31_[+1]_39 chrXVI:55997-56435 6.4e-11 13_[+1]_57 chrXIV:569773-570004 6.4e-11 39_[+1]_31 chrVII:738959-739330 6.4e-11 60_[-1]_10 chrX:355210-355310 7.3e-11 1_[-1]_69 chrII:405717-406142 7.3e-11 29_[-1]_41 chrXI:162321-162710 7.3e-11 32_[+1]_38 chrV:138508-138907 7.3e-11 39_[-1]_31 chrIV:568723-569164 7.3e-11 19_[-1]_51 chrXIII:747735-748136 7.3e-11 17_[+1]_53 chrX:197182-197282 8.2e-11 43_[+1]_27 chrIV:410217-410568 8.2e-11 68_[-1]_2 chrVIII:146066-146448 8.2e-11 45_[+1]_25 chrVII:774186-774542 8.2e-11 66_[-1]_4 chrXV:110819-111157 3.6e-10 34_[+1]_36 chrVII:779447-779828 3.6e-10 59_[-1]_11 chrIV:434077-434448 4.5e-10 62_[+1]_8 chrVIII:115966-116348 4.5e-10 10_[+1]_60 chrIII:295314-295684 4.5e-10 66_[-1]_4 chrXII:374189-374566 8.1e-10 59_[-1]_11 chrIV:619853-620185 8.1e-10 10_[+1]_60 chrXV:340153-340535 8.1e-10 15_[+1]_55 chrXII:793744-794237 1.3e-09 8_[-1]_62 chrX:374231-374331 1.3e-09 5_[+1]_65 chrIX:324201-324402 1.3e-09 62_[+1]_8 chrX:541398-541498 1.3e-09 48_[-1]_22 chrXII:793744-794234 1.3e-09 9_[-1]_61 chrXIII:420458-420822 2.2e-09 8_[+1]_62 chrVII:823317-823689 2.2e-09 61_[-1]_9 chrV:438563-438877 2.2e-09 62_[-1]_8 chrXIII:372336-372616 2.2e-09 29_[+1]_41 chrVIII:475579-475936 4.6e-09 9_[+1]_61 chrIV:1075329-1075705 4.6e-09 15_[+1]_55 chrVII:319722-319984 4.6e-09 8_[-1]_62 chrVII:110441-110825 4.6e-09 52_[+1]_18 chrVIII:388784-389028 4.9e-09 47_[+1]_23 chrIV:1305472-1305833 1.1e-08 69_[-1]_1 chrII:226933-227290 1.2e-08 54_[-1]_16 chrIV:980821-981195 1.2e-08 26_[+1]_44 chrVIII:132939-133113 1.2e-08 60_[+1]_10 chrIV:437626-437965 1.2e-08 67_[-1]_3 chrI:182418-182634 1.2e-08 56_[+1]_14 chrXIII:259025-259406 1.2e-08 3_[+1]_67 chrXVI:744132-744506 1.4e-08 45_[-1]_25 chrVII:1004071-1004390 1.4e-08 66_[-1]_4 chrIV:1175712-1176012 2.7e-08 48_[-1]_22 chrXIV:102551-102990 4.2e-08 28_[-1]_42 chrXVI:810569-810828 4.2e-08 60_[-1]_10 chrIV:519622-519926 1.3e-07 61_[-1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAATCGAACCSSKGWCCYYMHSVTKRMAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAATCGAACCSSKGWCCYYMHSVTKRMAA width=30 seqs=76 chrXVI:860210-860585 ( 62) GGAATCGAACCGGGGGCCCAACGATGGCAA 1 chrXV:282005-282347 ( 68) GGAATCGAACCGGGGGCCCAACGATGGCAA 1 chrX:531662-531762 ( 28) GGAATCGAACCGGGGGCCCAACGATGGCAA 1 chrIV:83381-83743 ( 66) GGAATCGAACCGGGGGCCCAACGATGGCAA 1 chrXV:226502-226837 ( 3) GGAATCGAACCGGGGGCCCAACGATGGCAA 1 chrVII:845473-845865 ( 60) GGAATCGAACCGGGGGCCCAACGATGGCAA 1 chrIV:992696-993029 ( 50) GGAATCGAACCGGGGGCCCAACGATGGCAA 1 chrIV:1017060-1017456 ( 10) GGAGTCGAACCCCGGTCTCCACGGTGAGAA 1 chrIII:123445-123797 ( 17) GGACTCGAACCCGGGACCTCCCGCACCCTA 1 chrV:354765-355167 ( 49) GGAGTCGAACCCCGGTCTCCACGGTGAAAG 1 chrV:487220-487555 ( 5) GGAGTCGAACCCCGGTCTCCACGGTGAAAG 1 chrXIII:290627-290996 ( 71) GGAGTCGAACCCCGGTCTCCACGGTGAAAG 1 chrII:645013-645354 ( 65) GGAGTCGAACCCCGGTCTCCACGGTGAAAG 1 chrVII:541697-542118 ( 24) GGAGTCGAACCCCGGTCTCCACGGTGAAAG 1 chrVII:401441-401629 ( 53) GGAGTCGAACCCCGGTCTCCACGGTGAAAG 1 chrXVI:210083-210417 ( 3) GGAGTCGAACCCCGGTCTCCACGGTGAAAG 1 chrVII:328428-328829 ( 36) GGAGTCGAACCCCGGTCTCCACGGTGAAAG 1 chrV:311858-312252 ( 29) GGAATCGAACCGATGACCTCTTCCTTGCAA 1 chrI:166138-166466 ( 47) GGAATCGAACCGATGACCTCTTCCTTGCAA 1 chrXV:854057-854308 ( 66) GGAATCGAACCGATGACCTCTTCCTTGCAA 1 chrVII:876230-876598 ( 62) GGGCTCGAACCCCTAACCTTATGATTAAGA 1 chrV:435646-435978 ( 1) GGGCTCGAACCCCTAACCTTATGATTAAGA 1 chrIV:1352239-1352677 ( 69) GGGCTCGAACCCCTAACCTTATGATTAAGA 1 chrVII:122133-122503 ( 33) GGGCTCGAACCCCTAACCTTATGATTAAGA 1 chrV:135292-135639 ( 21) GGGCTCGAACCCCTAACCTTATGATTAAGA 1 chrVII:185584-185933 ( 17) GGGCTCGAACCCCTAACCTTATGATTAAGA 1 chrV:250239-250488 ( 4) GGATTCGAACCGGGGTTGTCCGGATCAAAA 1 chrXII:448467-448891 ( 32) GGATTCGAACCGGGGTTGTCCGGATCAAAA 1 chrXVI:55997-56435 ( 14) GGAATTGAACCTGCAACCCTTCGATTGCAA 1 chrXIV:569773-570004 ( 40) GGGATCGAACCGCTGATCCCCGCGTTATTA 1 chrVII:738959-739330 ( 61) GGGATCGAACCGCTGATCCCCGCGTTATTA 1 chrX:355210-355310 ( 2) GGGGTCGAACCCATAATCTTCTGATTAGAA 1 chrII:405717-406142 ( 30) GGGGTCGAACCCATAATCTTCTGATTAGAA 1 chrXI:162321-162710 ( 33) GGGGTCGAACCCATAATCTTCTGATTAGAA 1 chrV:138508-138907 ( 40) GGGGTCGAACCCATAATCTTCTGATTAGAA 1 chrIV:568723-569164 ( 20) GGGGTCGAACCCATAATCTTCTGATTAGAA 1 chrXIII:747735-748136 ( 18) GGGGTCGAACCCATAATCTTCTGATTAGAA 1 chrX:197182-197282 ( 44) GGAATCGAACCGGAGACCTCTCCCATGCTA 1 chrIV:410217-410568 ( 69) GGAATCGAACCGGAGACCTCTCCCATGCTA 1 chrVIII:146066-146448 ( 46) GGAATCGAACCGGAGACCTCTCCCATGCTA 1 chrVII:774186-774542 ( 67) GGAATCGAACCGGAGACCTCTCCCATGCTA 1 chrXV:110819-111157 ( 35) AGAATCGAACCCGTGTCCCCACCTTGGAAG 1 chrVII:779447-779828 ( 60) AGAATCGAACCCGTGTCCCCACCTTGGAAG 1 chrIV:434077-434448 ( 63) GGATTTGAACCGATGATCTCCACATTACTA 1 chrVIII:115966-116348 ( 11) GGATTTGAACCGATGATCTCCACATTACTA 1 chrIII:295314-295684 ( 67) GGATTTGAACCGATGATCTCCACATTACTA 1 chrXII:374189-374566 ( 60) GGACTTGAACCTGGAATCTTCTGGTTCGTA 1 chrIV:619853-620185 ( 11) GGACTTGAACCTGGAATCTTCTGGTTCGTA 1 chrXV:340153-340535 ( 16) GGACTTGAACCTGGAATCTTCTGGTTCGTA 1 chrXII:793744-794237 ( 9) GGAATTGAACCCCGATCTGGCACGCGACAA 1 chrX:374231-374331 ( 6) GGAATTGAACCCCGATCTGGCACGCGACAA 1 chrIX:324201-324402 ( 63) GGAATTGAACCCCGATCTGGCACGCGACAA 1 chrX:541398-541498 ( 49) GGAATTGAACCCCGATCTGGCACGCGACAA 1 chrXII:793744-794234 ( 10) GGAATTGAACCCCGATCTGGCACGCGACAA 1 chrXIII:420458-420822 ( 9) AGGATCGAACTGGGGACGTTCTGCGTGTTA 1 chrVII:823317-823689 ( 62) AGGATCGAACTGGGGACGTTCTGCGTGTTA 1 chrV:438563-438877 ( 63) AGGATCGAACTGGGGACGTTCTGCGTGTTA 1 chrXIII:372336-372616 ( 30) AGGATCGAACTGGGGACGTTCTGCGTGTTA 1 chrVIII:475579-475936 ( 10) AGGATCGAACTCGGGACCTTTGCCGTGTGA 1 chrIV:1075329-1075705 ( 16) AGGATCGAACTCGGGACCTTTGCCGTGTGA 1 chrVII:319722-319984 ( 9) AGAATCGAACCAGGGTTTCATCGGCCACAA 1 chrVII:110441-110825 ( 53) AGAATCGAACCAGGGTTTCATCGGCCACAA 1 chrVIII:388784-389028 ( 48) GGAATTGAACCCAGGGCCTCTCGCATGCTT 1 chrIV:1305472-1305833 ( 70) GGACTCGAACCTGCGCGGGCCAAAGCCCAA 1 chrII:226933-227290 ( 55) GGACTCGAACCTGCGCGGGCAAAGCCCAAA 1 chrIV:980821-981195 ( 27) GGACTCGAACCTGCGCGGGCAAAGCCCAAA 1 chrVIII:132939-133113 ( 61) GGACTCGAACCTGCGCGGGCAAAGCCCAAA 1 chrIV:437626-437965 ( 68) GGACTCGAACCTGCGCGGGCAAAGCCCAAA 1 chrI:182418-182634 ( 57) GGACTCGAACCTGCGCGGGCAAAGCCCAAA 1 chrXIII:259025-259406 ( 4) GGACTCGAACCTGCGCGGGCAAAGCCCAAA 1 chrXVI:744132-744506 ( 46) AGAATTGAACTAACGACCTTTGCATTACAA 1 chrVII:1004071-1004390 ( 67) AGAATTGAACTAACGACCTTTGCATTACAA 1 chrIV:1175712-1176012 ( 49) AGGTTCGAACTCTCGACCTTCAGATTATGA 1 chrXIV:102551-102990 ( 29) AGGGTTGAACTCACGATCTTGCGATTAACA 1 chrXVI:810569-810828 ( 61) AGGGTTGAACTCACGATCTTGCGATTAACA 1 chrIV:519622-519926 ( 62) AGGTTCGAACTCGCGCGGACAACCGTCCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAATCGAACCSSKGWCCYYMHSVTKRMAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 40185 bayes= 9.23887 E= 2.6e-321 -54 -1289 203 -1289 -1289 -1289 237 -1289 116 -1289 70 -1289 59 21 21 -173 -1289 -1289 -1289 171 -1289 200 -1289 -45 -1289 -1289 237 -1289 171 -1289 -1289 -1289 171 -1289 -1289 -1289 -1289 237 -1289 -1289 -1289 212 -1289 -95 -254 129 76 -108 -45 58 129 -454 -254 -7 129 -8 -15 -1289 190 -1289 78 -88 -88 -22 -1289 170 -88 -22 -1289 164 -7 -54 -454 64 -30 78 -137 125 -156 21 41 93 -288 -63 -45 98 -88 -8 -173 70 161 -1289 41 12 87 -354 -195 -18 -88 107 -1289 -30 64 82 78 -30 70 -1289 16 107 -56 -137 101 -288 -71 -37 148 -1289 -56 -454 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAATCGAACCSSKGWCCYYMHSVTKRMAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 76 E= 2.6e-321 0.210526 0.000000 0.789474 0.000000 0.000000 0.000000 1.000000 0.000000 0.684211 0.000000 0.315789 0.000000 0.460526 0.223684 0.223684 0.092105 0.000000 0.000000 0.000000 1.000000 0.000000 0.776316 0.000000 0.223684 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.842105 0.000000 0.157895 0.052632 0.473684 0.328947 0.144737 0.223684 0.289474 0.473684 0.013158 0.052632 0.184211 0.473684 0.289474 0.276316 0.000000 0.723684 0.000000 0.526316 0.105263 0.105263 0.263158 0.000000 0.631579 0.105263 0.263158 0.000000 0.605263 0.184211 0.210526 0.013158 0.302632 0.157895 0.526316 0.118421 0.460526 0.065789 0.355263 0.407895 0.368421 0.026316 0.197368 0.223684 0.381579 0.105263 0.289474 0.092105 0.315789 0.592105 0.000000 0.407895 0.210526 0.355263 0.026316 0.078947 0.171053 0.105263 0.644737 0.000000 0.157895 0.302632 0.539474 0.526316 0.157895 0.315789 0.000000 0.342105 0.407895 0.131579 0.118421 0.618421 0.026316 0.118421 0.236842 0.855263 0.000000 0.131579 0.013158 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAATCGAACCSSKGWCCYYMHSVTKRMAA MEME-1 regular expression -------------------------------------------------------------------------------- [GA]G[AG][ACG]T[CT]GAACC[CG][GCA][GT][GA][AT][CT][CT][TC][CT][AC][CTA][GC][AGC]T[TG][AG][CA][AT]A -------------------------------------------------------------------------------- Time 314.82 secs. ******************************************************************************** ******************************************************************************** MOTIF BKTGGCYBAGTKGKWWARGSS MEME-2 width = 21 sites = 94 llr = 1387 E-value = 6.0e-225 ******************************************************************************** -------------------------------------------------------------------------------- Motif BKTGGCYBAGTKGKWWARGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 11:2:::1a2::::3664::: pos.-specific C 4::::854:::2:11:11254 probability G 24:8a:22:8:5a41124745 matrix T 34a::233::a3:553:11:1 bits 2.4 * * 2.1 * * 1.9 * * 1.7 * ** * * Relative 1.4 **** *** * Entropy 1.2 **** *** * (21.3 bits) 0.9 **** *** * ** 0.7 ***** ****** *** 0.5 ****** ****** ** *** 0.2 ********************* 0.0 --------------------- Multilevel CTTGGCCCAGTGGTTAAAGCG consensus TG TT A T GATGG GC sequence G GG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BKTGGCYBAGTKGKWWARGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrII:226933-227290 + 19 4.13e-12 AACGAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:980821-981195 - 72 4.13e-12 TGAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:1305472-1305833 + 33 4.13e-12 ATTAAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:437626-437965 + 32 4.13e-12 AGTAAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrV:86380-86815 + 62 4.13e-12 GTTATGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXIII:259025-259406 - 49 4.13e-12 AGTATGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:784174-784558 + 43 1.07e-10 CAACCGTCCC AGTGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrXII:734637-734977 + 50 3.12e-10 AGTTTGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIV:667886-668254 - 35 3.12e-10 AAATTGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXIV:569773-570004 - 77 3.12e-10 TCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXVI:880183-880533 - 36 3.12e-10 ATAATGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrVII:738959-739330 + 33 3.12e-10 AAATAGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXVI:689402-689812 + 13 4.60e-10 TTTTGGGCAC TATGGCCGAGTGGTTAAGGCG ACAGACTTGA chrIX:248676-249050 + 42 4.60e-10 TTTTAGGCAC TATGGCCGAGTGGTTAAGGCG ACAGACTTGA chrIII:227774-228177 + 22 4.60e-10 GAAATGGCAC TATGGCCGAGTGGTTAAGGCG AGAGACTCGA chrX:617746-617846 + 42 9.59e-10 ACAATGGGAG TTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXII:731967-732276 + 24 9.59e-10 ACAATGGGAG TTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXII:592411-592773 - 52 9.59e-10 ACAATGGGAG TTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrV:492232-492602 - 32 1.60e-09 TCCTATTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrXII:374189-374566 + 33 1.60e-09 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrIV:619853-620185 - 47 1.60e-09 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrXV:340153-340535 - 52 1.60e-09 ATCTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrXI:490790-491118 + 69 1.60e-09 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrIV:519622-519926 + 24 2.60e-09 TTTACGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXII:962866-963232 - 31 2.60e-09 TCGACGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrX:424317-424417 - 35 2.60e-09 AAGATGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrV:311858-312252 - 65 4.78e-09 ATTCTGGGCA CATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrI:166138-166466 + 20 4.78e-09 GAGTTGGGCA CATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrX:197182-197282 - 80 4.78e-09 . TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrIV:410217-410568 + 42 4.78e-09 ATATTGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrVII:774186-774542 + 40 4.78e-09 TAATTGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrVIII:115966-116348 - 47 9.66e-09 TTAGAGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXV:353935-354279 - 31 9.66e-09 TTACTGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrIII:295314-295684 + 40 9.66e-09 ATTAAGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXIV:102551-102990 + 1 1.86e-08 . CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXVI:810569-810828 + 33 1.86e-08 TTTGCGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXV:228171-228509 + 46 1.86e-08 TATTAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrVII:876230-876598 + 35 2.10e-08 GAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrV:435646-435978 - 37 2.10e-08 TAAGAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:122133-122503 + 6 2.10e-08 GCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrV:135292-135639 - 57 2.10e-08 AAAAAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrX:414808-414908 + 53 2.10e-08 AATTAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVI:226597-226912 - 31 2.10e-08 AAAATGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:185584-185933 - 53 2.10e-08 AAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrXII:875207-875594 + 31 2.38e-08 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXV:438478-438870 + 24 2.38e-08 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXVI:769096-769485 - 37 2.38e-08 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXI:578800-579202 + 19 2.38e-08 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrV:469293-469644 + 44 5.99e-08 TAATTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:420458-420822 - 46 5.99e-08 TAACAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:823317-823689 + 34 5.99e-08 AGAGTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:438563-438877 + 35 5.99e-08 AATTAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:308036-308378 - 35 5.99e-08 TAAGTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:372336-372616 - 67 5.99e-08 AACCTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXII:628204-628627 + 23 8.26e-08 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:422914-423332 + 24 8.26e-08 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:857264-857641 - 64 8.26e-08 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:440565-440991 - 54 2.02e-07 TATATGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVI:157828-158163 - 37 2.02e-07 TAGAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXIII:352114-352455 + 51 2.02e-07 TATAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:237738-238096 - 47 2.02e-07 AGTAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrV:99962-100328 + 43 3.47e-07 GGCTAAGCGC CGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrIII:149754-150103 + 47 3.47e-07 TGTTGAGCGC CGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrXVI:860210-860585 + 37 6.21e-07 AACAAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXV:282005-282347 + 43 6.21e-07 AAAGCGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVI:162060-162389 + 59 6.21e-07 AACAAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrX:531662-531762 + 3 6.21e-07 CA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrIV:83381-83743 + 41 6.21e-07 ACTTAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrIII:142590-142934 - 34 6.21e-07 TACTAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXV:226502-226837 - 37 6.21e-07 ATTCAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:845473-845865 + 35 6.21e-07 AACAAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrIV:992696-993029 + 25 6.21e-07 TGTGAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXVI:744132-744506 + 20 6.73e-07 TAAAAGCCTC CTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrVIII:466826-467133 + 66 6.73e-07 TTTTAGCCTC CTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrVII:1004071-1004390 + 41 6.73e-07 GGTTTGCCTC CTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrVII:661575-661916 + 59 6.73e-07 AATTTGCCTC CTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrXIV:25941-26337 - 64 8.49e-07 TACGGATTGA TTGAGCCCAGTGGTGAAAGCC AAACTCGAAC chrII:405717-406142 + 4 8.49e-07 TCG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrXI:162321-162710 - 68 8.49e-07 TATTAGCTCG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrV:138508-138907 + 14 8.49e-07 ATAATGCTCG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrXIII:747735-748136 - 53 8.49e-07 GACTAGCTCG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrXI:46663-46966 - 17 1.14e-06 ACTCAGCCCT TTTGGCCAAGTGGTAAGGCAT CGCACTCGTA chrIV:1175712-1176012 + 22 1.14e-06 ACAAAGCTTC AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrII:642910-643249 - 24 1.32e-06 AGAAAGCTCG TATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrXVI:435766-436142 - 35 1.32e-06 CAAAAGCTCG TATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrXVI:75589-75701 + 60 1.63e-06 CACTCGGTCT TGTGGCGGAGTTGGATTTGCT TGACTGTGGC chrVII:878578-878976 - 63 2.92e-06 AAGATGAAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrX:415854-415954 - 36 2.92e-06 AAGTTGAAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrXIII:379200-379575 - 46 2.92e-06 AAGTTGAAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrXV:288025-288381 + 44 4.95e-06 AGCTTCTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrX:354081-354181 + 30 4.95e-06 TATCACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVI:210512-210863 - 45 4.95e-06 AACGACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVII:766161-766480 - 43 1.01e-05 ACGGGCTGGC CGCAGCGCAGTCGCCTGCCGC ACTAAACCTT chrXVI:280675-281784 + 38 1.01e-05 CAAAATTATA GATGGCCGAACCGCTAAGGAT TGCGGACCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BKTGGCYBAGTKGKWWARGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:226933-227290 4.1e-12 18_[+2]_61 chrIV:980821-981195 4.1e-12 71_[-2]_8 chrIV:1305472-1305833 4.1e-12 32_[+2]_47 chrIV:437626-437965 4.1e-12 31_[+2]_48 chrV:86380-86815 4.1e-12 61_[+2]_18 chrXIII:259025-259406 4.1e-12 48_[-2]_31 chrXII:784174-784558 1.1e-10 42_[+2]_37 chrXII:734637-734977 3.1e-10 49_[+2]_30 chrIV:667886-668254 3.1e-10 34_[-2]_45 chrXIV:569773-570004 3.1e-10 76_[-2]_3 chrXVI:880183-880533 3.1e-10 35_[-2]_44 chrVII:738959-739330 3.1e-10 32_[+2]_47 chrXVI:689402-689812 4.6e-10 12_[+2]_67 chrIX:248676-249050 4.6e-10 41_[+2]_38 chrIII:227774-228177 4.6e-10 21_[+2]_58 chrX:617746-617846 9.6e-10 41_[+2]_38 chrXII:731967-732276 9.6e-10 23_[+2]_56 chrXII:592411-592773 9.6e-10 51_[-2]_28 chrV:492232-492602 1.6e-09 31_[-2]_48 chrXII:374189-374566 1.6e-09 32_[+2]_47 chrIV:619853-620185 1.6e-09 46_[-2]_33 chrXV:340153-340535 1.6e-09 51_[-2]_28 chrXI:490790-491118 1.6e-09 68_[+2]_11 chrIV:519622-519926 2.6e-09 23_[+2]_56 chrXII:962866-963232 2.6e-09 30_[-2]_49 chrX:424317-424417 2.6e-09 34_[-2]_45 chrV:311858-312252 4.8e-09 64_[-2]_15 chrI:166138-166466 4.8e-09 19_[+2]_60 chrX:197182-197282 4.8e-09 79_[-2] chrIV:410217-410568 4.8e-09 41_[+2]_38 chrVII:774186-774542 4.8e-09 39_[+2]_40 chrVIII:115966-116348 9.7e-09 46_[-2]_33 chrXV:353935-354279 9.7e-09 30_[-2]_49 chrIII:295314-295684 9.7e-09 39_[+2]_40 chrXIV:102551-102990 1.9e-08 [+2]_79 chrXVI:810569-810828 1.9e-08 32_[+2]_47 chrXV:228171-228509 1.9e-08 45_[+2]_34 chrVII:876230-876598 2.1e-08 34_[+2]_45 chrV:435646-435978 2.1e-08 36_[-2]_43 chrVII:122133-122503 2.1e-08 5_[+2]_74 chrV:135292-135639 2.1e-08 56_[-2]_23 chrX:414808-414908 2.1e-08 52_[+2]_27 chrVI:226597-226912 2.1e-08 30_[-2]_49 chrVII:185584-185933 2.1e-08 52_[-2]_27 chrXII:875207-875594 2.4e-08 30_[+2]_49 chrXV:438478-438870 2.4e-08 23_[+2]_56 chrXVI:769096-769485 2.4e-08 36_[-2]_43 chrXI:578800-579202 2.4e-08 18_[+2]_61 chrV:469293-469644 6e-08 43_[+2]_36 chrXIII:420458-420822 6e-08 45_[-2]_34 chrVII:823317-823689 6e-08 33_[+2]_46 chrV:438563-438877 6e-08 34_[+2]_45 chrXI:308036-308378 6e-08 34_[-2]_45 chrXIII:372336-372616 6e-08 66_[-2]_13 chrXII:628204-628627 8.3e-08 22_[+2]_57 chrVII:422914-423332 8.3e-08 23_[+2]_56 chrVII:857264-857641 8.3e-08 63_[-2]_16 chrVII:440565-440991 2e-07 53_[-2]_26 chrVI:157828-158163 2e-07 36_[-2]_43 chrXIII:352114-352455 2e-07 50_[+2]_29 chrVIII:237738-238096 2e-07 46_[-2]_33 chrV:99962-100328 3.5e-07 42_[+2]_37 chrIII:149754-150103 3.5e-07 46_[+2]_33 chrXVI:860210-860585 6.2e-07 36_[+2]_43 chrXV:282005-282347 6.2e-07 42_[+2]_37 chrVI:162060-162389 6.2e-07 58_[+2]_21 chrX:531662-531762 6.2e-07 2_[+2]_77 chrIV:83381-83743 6.2e-07 40_[+2]_39 chrIII:142590-142934 6.2e-07 33_[-2]_46 chrXV:226502-226837 6.2e-07 36_[-2]_43 chrVII:845473-845865 6.2e-07 34_[+2]_45 chrIV:992696-993029 6.2e-07 24_[+2]_55 chrXVI:744132-744506 6.7e-07 19_[+2]_60 chrVIII:466826-467133 6.7e-07 65_[+2]_14 chrVII:1004071-1004390 6.7e-07 40_[+2]_39 chrVII:661575-661916 6.7e-07 58_[+2]_21 chrXIV:25941-26337 8.5e-07 63_[-2]_16 chrII:405717-406142 8.5e-07 3_[+2]_76 chrXI:162321-162710 8.5e-07 67_[-2]_12 chrV:138508-138907 8.5e-07 13_[+2]_66 chrXIII:747735-748136 8.5e-07 52_[-2]_27 chrXI:46663-46966 1.1e-06 16_[-2]_63 chrIV:1175712-1176012 1.1e-06 21_[+2]_58 chrII:642910-643249 1.3e-06 23_[-2]_56 chrXVI:435766-436142 1.3e-06 34_[-2]_45 chrXVI:75589-75701 1.6e-06 59_[+2]_20 chrVII:878578-878976 2.9e-06 62_[-2]_17 chrX:415854-415954 2.9e-06 35_[-2]_44 chrXIII:379200-379575 2.9e-06 45_[-2]_34 chrXV:288025-288381 4.9e-06 43_[+2]_36 chrX:354081-354181 4.9e-06 29_[+2]_50 chrVI:210512-210863 4.9e-06 44_[-2]_35 chrVII:766161-766480 1e-05 42_[-2]_37 chrXVI:280675-281784 1e-05 37_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BKTGGCYBAGTKGKWWARGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BKTGGCYBAGTKGKWWARGSS width=21 seqs=94 chrII:226933-227290 ( 19) CTTGGCCGAGTGGTTAAGGCG 1 chrIV:980821-981195 ( 72) CTTGGCCGAGTGGTTAAGGCG 1 chrIV:1305472-1305833 ( 33) CTTGGCCGAGTGGTTAAGGCG 1 chrIV:437626-437965 ( 32) CTTGGCCGAGTGGTTAAGGCG 1 chrV:86380-86815 ( 62) CTTGGCCGAGTGGTTAAGGCG 1 chrXIII:259025-259406 ( 49) CTTGGCCGAGTGGTTAAGGCG 1 chrXII:784174-784558 ( 43) AGTGGCCGAGTGGTTAAGGCG 1 chrXII:734637-734977 ( 50) CTTGGCCCAGTTGGTTAAGGC 1 chrIV:667886-668254 ( 35) CTTGGCCCAGTTGGTTAAGGC 1 chrXIV:569773-570004 ( 77) CTTGGCCCAGTTGGTTAAGGC 1 chrXVI:880183-880533 ( 36) CTTGGCCCAGTTGGTTAAGGC 1 chrVII:738959-739330 ( 33) CTTGGCCCAGTTGGTTAAGGC 1 chrXVI:689402-689812 ( 13) TATGGCCGAGTGGTTAAGGCG 1 chrIX:248676-249050 ( 42) TATGGCCGAGTGGTTAAGGCG 1 chrIII:227774-228177 ( 22) TATGGCCGAGTGGTTAAGGCG 1 chrX:617746-617846 ( 42) TTTGGCCGAGTGGTTTAAGGC 1 chrXII:731967-732276 ( 24) TTTGGCCGAGTGGTTTAAGGC 1 chrXII:592411-592773 ( 52) TTTGGCCGAGTGGTTTAAGGC 1 chrV:492232-492602 ( 32) CGTGGCCCAATGGTCACGGCG 1 chrXII:374189-374566 ( 33) CGTGGCCCAATGGTCACGGCG 1 chrIV:619853-620185 ( 47) CGTGGCCCAATGGTCACGGCG 1 chrXV:340153-340535 ( 52) CGTGGCCCAATGGTCACGGCG 1 chrXI:490790-491118 ( 69) CGTGGCCCAATGGTCACGGCG 1 chrIV:519622-519926 ( 24) GTTGGCCGAGTGGTCTAAGGC 1 chrXII:962866-963232 ( 31) GTTGGCCGAGTGGTCTAAGGC 1 chrX:424317-424417 ( 35) GTTGGCCGAGTGGTCTAAGGC 1 chrV:311858-312252 ( 65) CATGGCGCAGTTGGTAGCGCG 1 chrI:166138-166466 ( 20) CATGGCGCAGTTGGTAGCGCG 1 chrX:197182-197282 ( 80) TGTGGCGTAGTCGGTAGCGCG 1 chrIV:410217-410568 ( 42) TGTGGCGTAGTCGGTAGCGCG 1 chrVII:774186-774542 ( 40) TGTGGCGTAGTCGGTAGCGCG 1 chrVIII:115966-116348 ( 47) TATGGCCAAGTTGGTAAGGCG 1 chrXV:353935-354279 ( 31) TATGGCCAAGTTGGTAAGGCG 1 chrIII:295314-295684 ( 40) TATGGCCAAGTTGGTAAGGCG 1 chrXIV:102551-102990 ( 1) CATGGCCAAGTTGGTTAAGGC 1 chrXVI:810569-810828 ( 33) CATGGCCAAGTTGGTTAAGGC 1 chrXV:228171-228509 ( 46) CATGGCCAAGTTGGTTAAGGC 1 chrVII:876230-876598 ( 35) GTTGGCGCAATCGGTAGCGCG 1 chrV:435646-435978 ( 37) GTTGGCGCAATCGGTAGCGCG 1 chrVII:122133-122503 ( 6) GTTGGCGCAATCGGTAGCGCG 1 chrV:135292-135639 ( 57) GTTGGCGCAATCGGTAGCGCG 1 chrX:414808-414908 ( 53) GTTGGCGCAATCGGTAGCGCG 1 chrVI:226597-226912 ( 31) GTTGGCGCAATCGGTAGCGCG 1 chrVII:185584-185933 ( 53) GTTGGCGCAATCGGTAGCGCG 1 chrXII:875207-875594 ( 31) GTTAGCTCAGTTGGTAGAGCG 1 chrXV:438478-438870 ( 24) GTTAGCTCAGTTGGTAGAGCG 1 chrXVI:769096-769485 ( 37) GTTAGCTCAGTTGGTAGAGCG 1 chrXI:578800-579202 ( 19) GTTAGCTCAGTTGGTAGAGCG 1 chrV:469293-469644 ( 44) CGTGGTCTAGTCGGTTATGGC 1 chrXIII:420458-420822 ( 46) CGTGGTCTAGTCGGTTATGGC 1 chrVII:823317-823689 ( 34) CGTGGTCTAGTCGGTTATGGC 1 chrV:438563-438877 ( 35) CGTGGTCTAGTCGGTTATGGC 1 chrXI:308036-308378 ( 35) CGTGGTCTAGTCGGTTATGGC 1 chrXIII:372336-372616 ( 67) CGTGGTCTAGTCGGTTATGGC 1 chrXII:628204-628627 ( 23) TTTGGCCGAGCGGTCTAAGGC 1 chrVII:422914-423332 ( 24) TTTGGCCGAGCGGTCTAAGGC 1 chrVII:857264-857641 ( 64) TTTGGCCGAGCGGTCTAAGGC 1 chrVII:440565-440991 ( 54) TTTAGCTCAGTTGGGAGAGCG 1 chrVI:157828-158163 ( 37) TTTAGCTCAGTTGGGAGAGCG 1 chrXIII:352114-352455 ( 51) TTTAGCTCAGTTGGGAGAGCG 1 chrVIII:237738-238096 ( 47) TTTAGCTCAGTTGGGAGAGCG 1 chrV:99962-100328 ( 43) CGTGGCGCAGTGGAAGCGCGC 1 chrIII:149754-150103 ( 47) CGTGGCGCAGTGGAAGCGCGC 1 chrXVI:860210-860585 ( 37) AGTGGTTTAGTGGTAAAATCC 1 chrXV:282005-282347 ( 43) AGTGGTTTAGTGGTAAAATCC 1 chrVI:162060-162389 ( 59) AGTGGTTTAGTGGTAAAATCC 1 chrX:531662-531762 ( 3) AGTGGTTTAGTGGTAAAATCC 1 chrIV:83381-83743 ( 41) AGTGGTTTAGTGGTAAAATCC 1 chrIII:142590-142934 ( 34) AGTGGTTTAGTGGTAAAATCC 1 chrXV:226502-226837 ( 37) AGTGGTTTAGTGGTAAAATCC 1 chrVII:845473-845865 ( 35) AGTGGTTTAGTGGTAAAATCC 1 chrIV:992696-993029 ( 25) AGTGGTTTAGTGGTAAAATCC 1 chrXVI:744132-744506 ( 20) CTTAGCTTAGTGGTAGAGCGT 1 chrVIII:466826-467133 ( 66) CTTAGCTTAGTGGTAGAGCGT 1 chrVII:1004071-1004390 ( 41) CTTAGCTTAGTGGTAGAGCGT 1 chrVII:661575-661916 ( 59) CTTAGCTTAGTGGTAGAGCGT 1 chrXIV:25941-26337 ( 64) TTGAGCCCAGTGGTGAAAGCC 1 chrII:405717-406142 ( 4) CGTGGCGTAATGGCAACGCGT 1 chrXI:162321-162710 ( 68) CGTGGCGTAATGGCAACGCGT 1 chrV:138508-138907 ( 14) CGTGGCGTAATGGCAACGCGT 1 chrXIII:747735-748136 ( 53) CGTGGCGTAATGGCAACGCGT 1 chrXI:46663-46966 ( 17) TTTGGCCAAGTGGTAAGGCAT 1 chrIV:1175712-1176012 ( 22) AGTAGCTCAGTAGGAAGAGCG 1 chrII:642910-643249 ( 24) TATGGCGCAGTGGTAGCGCAG 1 chrXVI:435766-436142 ( 35) TATGGCGCAGTGGTAGCGCAG 1 chrXVI:75589-75701 ( 60) TGTGGCGGAGTTGGATTTGCT 1 chrVII:878578-878976 ( 63) GGTGGCTCAATGGTAGAGCTT 1 chrX:415854-415954 ( 36) GGTGGCTCAATGGTAGAGCTT 1 chrXIII:379200-379575 ( 46) GGTGGCTCAATGGTAGAGCTT 1 chrXV:288025-288381 ( 44) GGTAGCCAAGTTGGTTTAAGG 1 chrX:354081-354181 ( 30) GGTAGCCAAGTTGGTTTAAGG 1 chrVI:210512-210863 ( 45) GGTAGCCAAGTTGGTTTAAGG 1 chrVII:766161-766480 ( 43) CGCAGCGCAGTCGCCTGCCGC 1 chrXVI:280675-281784 ( 38) GATGGCCGAACCGCTAAGGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BKTGGCYBAGTKGKWWARGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 45279 bayes= 11.0064 E= 6.0e-225 -139 106 20 -26 -104 -1320 110 51 -1320 -419 -419 168 -68 -1320 206 -1320 -1320 -1320 237 -1320 -1320 212 -1320 -94 -1320 137 27 -20 -152 102 20 -15 171 -1320 -1320 -1320 -52 -1320 202 -1320 -1320 -219 -1320 165 -484 -2 146 -20 -1320 -1320 237 -1320 -384 -160 120 61 -9 -60 -187 80 93 -1320 -73 -4 91 -49 34 -285 44 -49 94 -204 -326 -10 183 -168 -285 146 102 -326 -1320 98 127 -104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BKTGGCYBAGTKGKWWARGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 94 E= 6.0e-225 0.117021 0.404255 0.223404 0.255319 0.148936 0.000000 0.414894 0.436170 0.000000 0.010638 0.010638 0.978723 0.191489 0.000000 0.808511 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.840426 0.000000 0.159574 0.000000 0.500000 0.234043 0.265957 0.106383 0.393617 0.223404 0.276596 1.000000 0.000000 0.000000 0.000000 0.212766 0.000000 0.787234 0.000000 0.000000 0.042553 0.000000 0.957447 0.010638 0.191489 0.531915 0.265957 0.000000 0.000000 1.000000 0.000000 0.021277 0.063830 0.446809 0.468085 0.287234 0.127660 0.053191 0.531915 0.585106 0.000000 0.117021 0.297872 0.574468 0.138298 0.244681 0.042553 0.414894 0.138298 0.372340 0.074468 0.031915 0.180851 0.691489 0.095745 0.042553 0.531915 0.393617 0.031915 0.000000 0.382979 0.468085 0.148936 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BKTGGCYBAGTKGKWWARGSS MEME-2 regular expression -------------------------------------------------------------------------------- [CTG][TG]TGGC[CTG][CTG]A[GA]T[GT]G[TG][TA][AT][AG][AG]G[CG][GC] -------------------------------------------------------------------------------- Time 600.81 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCGWKATAGTGTAAYGGYTATCAYRTSMS MEME-3 width = 30 sites = 27 llr = 723 E-value = 8.5e-143 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCGWKATAGTGTAAYGGYTATCAYRTSMS MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::419:a::::a7:::::a:3a:4::5: pos.-specific C :7721::::::::::5::53::7:611546 probability G 3217141::a:7::3:aa:::3:::43314 matrix T 712:361a::a3a::5::57:7::4162:: bits 2.4 * ** 2.1 * ** 1.9 * ** 1.7 **** ** ** * * Relative 1.4 * **** ** ** * * * Entropy 1.2 *** ******* ** * *** * (38.7 bits) 0.9 **** ******************* * 0.7 **** ******************** **** 0.5 **** ******************** **** 0.2 ****************************** 0.0 ------------------------------ Multilevel TCCGATATAGTGTAACGGCTATCACATCAC consensus G CTG T GT TC GA TGGGCG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCGWKATAGTGTAAYGGYTATCAYRTSMS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrV:354765-355167 + 18 1.75e-17 TGTATTGTAA TCCGATATAGTGTAACGGCTATCACATCAC GCTTTCACCG chrV:487220-487555 - 36 1.75e-17 ATGAATTTAA TCCGATATAGTGTAACGGCTATCACATCAC GCTTTCACCG chrXII:797009-797356 + 46 1.75e-17 GTAGTTGTCG TCCGATATAGTGTAACGGCTATCACATCAC GCTTTCACCG chrXIII:290627-290996 + 40 1.75e-17 TGAAATATAA TCCGATATAGTGTAACGGCTATCACATCAC GCTTTCACCG chrX:115824-115924 - 23 1.75e-17 TCGTTTATAA TCCGATATAGTGTAACGGCTATCACATCAC GCTTTCACCG chrII:645013-645354 + 34 1.75e-17 TGAGTTATTA TCCGATATAGTGTAACGGCTATCACATCAC GCTTTCACCG chrIX:370245-370601 + 44 1.75e-17 TAGATTATAA TCCGATATAGTGTAACGGCTATCACATCAC GCTTTCACCG chrIII:82376-82676 - 28 1.75e-17 TAATTTGTTA TCCGATATAGTGTAACGGCTATCACATCAC GCTTTCACCG chrXVI:210083-210417 - 34 1.75e-17 CCAATTATTG TCCGATATAGTGTAACGGCTATCACATCAC GCTTTCACCG chrVII:328428-328829 + 5 1.75e-17 ATTG TCCGATATAGTGTAACGGCTATCACATCAC GCTTTCACCG chrIX:197432-197760 + 46 4.36e-15 GCTAATCAAA TCCGATGTAGTGTAACGGCTATCACATCAC GTTCTCACCG chrIV:1017060-1017456 - 41 4.36e-15 CAAGGTACAA TCCGATGTAGTGTAACGGCTATCACATCAC GTTCTCACCG chrXV:571800-572129 + 44 1.11e-12 ACAATTAAAA TCCGTGATAGTTTAATGGTCAGAATGGGCG CTTGTCGCGT chrX:355210-355310 + 53 1.11e-12 CTTTGTTTCT TCCGTGATAGTTTAATGGTCAGAATGGGCG CTTGTCGCGT chrVII:544461-544821 - 28 1.11e-12 AGATATTTCT TCCGTGATAGTTTAATGGTCAGAATGGGCG CTTGTCGCGT chrXI:513238-513559 - 26 1.11e-12 CAAATAACGT TCCGTGATAGTTTAATGGTCAGAATGGGCG CTTGTCGCGT chrX:374231-374331 - 37 1.11e-12 CTTTGTTTCT TCCGTGATAGTTTAATGGTCAGAATGGGCG CTTGTCGCGT chrXII:426964-427309 + 46 1.11e-12 GTGTTTCTTA TCCGTGATAGTTTAATGGTCAGAATGGGCG CTTGTCGCGT chrX:541398-541498 + 18 1.11e-12 AGAAAGAAAA TCCGTGATAGTTTAATGGTCAGAATGGGCG CTTGTCGCGT chrIV:568723-569164 + 71 1.11e-12 CTTTGTTTCT TCCGTGATAGTTTAATGGTCAGAATGGGCG chrIV:520799-521134 + 56 1.46e-11 TCCATTTTAG GGTCCTATAGTGTAGTGGTTATCACTTTCG GTTTTGATCC chrXII:448467-448891 - 63 1.46e-11 GAAGTTCC GGTCCTATAGTGTAGTGGTTATCACTTTCG GTTTTGATCC chrV:131012-131324 - 6 3.19e-11 ATAATTAAGA GGTTTTATAGTGTAGTGGTTATCACTTTCG GTTTT chrVIII:475579-475936 - 42 3.56e-11 TTAAAAGTCT GTTCCAATAGTGTAGCGGCTATCACGTTGC CTTCACACGG chrIV:1075329-1075705 - 48 3.56e-11 CCGTAATATT GTTCCAATAGTGTAGCGGCTATCACGTTGC CTTCACACGG chrXV:110819-111157 - 66 9.19e-11 AACCC GGGCGGTTAGTGTAGTGGTTATCATCCCAC CCTTCCAAGG chrVII:779447-779828 + 29 9.19e-11 AGTTAACCCC GGGCGGTTAGTGTAGTGGTTATCATCCCAC CCTTCCAAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCGWKATAGTGTAAYGGYTATCAYRTSMS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:354765-355167 1.8e-17 17_[+3]_53 chrV:487220-487555 1.8e-17 35_[-3]_35 chrXII:797009-797356 1.8e-17 45_[+3]_25 chrXIII:290627-290996 1.8e-17 39_[+3]_31 chrX:115824-115924 1.8e-17 22_[-3]_48 chrII:645013-645354 1.8e-17 33_[+3]_37 chrIX:370245-370601 1.8e-17 43_[+3]_27 chrIII:82376-82676 1.8e-17 27_[-3]_43 chrXVI:210083-210417 1.8e-17 33_[-3]_37 chrVII:328428-328829 1.8e-17 4_[+3]_66 chrIX:197432-197760 4.4e-15 45_[+3]_25 chrIV:1017060-1017456 4.4e-15 40_[-3]_30 chrXV:571800-572129 1.1e-12 43_[+3]_27 chrX:355210-355310 1.1e-12 52_[+3]_18 chrVII:544461-544821 1.1e-12 27_[-3]_43 chrXI:513238-513559 1.1e-12 25_[-3]_45 chrX:374231-374331 1.1e-12 36_[-3]_34 chrXII:426964-427309 1.1e-12 45_[+3]_25 chrX:541398-541498 1.1e-12 17_[+3]_53 chrIV:568723-569164 1.1e-12 70_[+3] chrIV:520799-521134 1.5e-11 55_[+3]_15 chrXII:448467-448891 1.5e-11 62_[-3]_8 chrV:131012-131324 3.2e-11 5_[-3]_65 chrVIII:475579-475936 3.6e-11 41_[-3]_29 chrIV:1075329-1075705 3.6e-11 47_[-3]_23 chrXV:110819-111157 9.2e-11 65_[-3]_5 chrVII:779447-779828 9.2e-11 28_[+3]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCGWKATAGTGTAAYGGYTATCAYRTSMS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCGWKATAGTGTAAYGGYTATCAYRTSMS width=30 seqs=27 chrV:354765-355167 ( 18) TCCGATATAGTGTAACGGCTATCACATCAC 1 chrV:487220-487555 ( 36) TCCGATATAGTGTAACGGCTATCACATCAC 1 chrXII:797009-797356 ( 46) TCCGATATAGTGTAACGGCTATCACATCAC 1 chrXIII:290627-290996 ( 40) TCCGATATAGTGTAACGGCTATCACATCAC 1 chrX:115824-115924 ( 23) TCCGATATAGTGTAACGGCTATCACATCAC 1 chrII:645013-645354 ( 34) TCCGATATAGTGTAACGGCTATCACATCAC 1 chrIX:370245-370601 ( 44) TCCGATATAGTGTAACGGCTATCACATCAC 1 chrIII:82376-82676 ( 28) TCCGATATAGTGTAACGGCTATCACATCAC 1 chrXVI:210083-210417 ( 34) TCCGATATAGTGTAACGGCTATCACATCAC 1 chrVII:328428-328829 ( 5) TCCGATATAGTGTAACGGCTATCACATCAC 1 chrIX:197432-197760 ( 46) TCCGATGTAGTGTAACGGCTATCACATCAC 1 chrIV:1017060-1017456 ( 41) TCCGATGTAGTGTAACGGCTATCACATCAC 1 chrXV:571800-572129 ( 44) TCCGTGATAGTTTAATGGTCAGAATGGGCG 1 chrX:355210-355310 ( 53) TCCGTGATAGTTTAATGGTCAGAATGGGCG 1 chrVII:544461-544821 ( 28) TCCGTGATAGTTTAATGGTCAGAATGGGCG 1 chrXI:513238-513559 ( 26) TCCGTGATAGTTTAATGGTCAGAATGGGCG 1 chrX:374231-374331 ( 37) TCCGTGATAGTTTAATGGTCAGAATGGGCG 1 chrXII:426964-427309 ( 46) TCCGTGATAGTTTAATGGTCAGAATGGGCG 1 chrX:541398-541498 ( 18) TCCGTGATAGTTTAATGGTCAGAATGGGCG 1 chrIV:568723-569164 ( 71) TCCGTGATAGTTTAATGGTCAGAATGGGCG 1 chrIV:520799-521134 ( 56) GGTCCTATAGTGTAGTGGTTATCACTTTCG 1 chrXII:448467-448891 ( 63) GGTCCTATAGTGTAGTGGTTATCACTTTCG 1 chrV:131012-131324 ( 6) GGTTTTATAGTGTAGTGGTTATCACTTTCG 1 chrVIII:475579-475936 ( 42) GTTCCAATAGTGTAGCGGCTATCACGTTGC 1 chrIV:1075329-1075705 ( 48) GTTCCAATAGTGTAGCGGCTATCACGTTGC 1 chrXV:110819-111157 ( 66) GGGCGGTTAGTGTAGTGGTTATCATCCCAC 1 chrVII:779447-779828 ( 29) GGGCGGTTAGTGTAGTGGTTATCATCCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCGWKATAGTGTAAYGGYTATCAYRTSMS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 40185 bayes= 9.46961 E= 8.5e-143 -1140 -1140 42 127 -1140 193 -7 -205 -1140 193 -139 -72 -1140 20 193 -304 54 -39 -139 12 -205 -1140 93 86 148 -1140 -139 -205 -1140 -1140 -1140 171 171 -1140 -1140 -1140 -1140 -1140 237 -1140 -1140 -1140 -1140 171 -1140 -1140 186 -5 -1140 -1140 -1140 171 171 -1140 -1140 -1140 127 -1140 42 -1140 -1140 142 -1140 65 -1140 -1140 237 -1140 -1140 -1140 237 -1140 -1140 142 -1140 65 -1140 61 -1140 120 171 -1140 -1140 -1140 -1140 -1140 61 120 -5 186 -1140 -1140 171 -1140 -1140 -1140 -1140 170 -1140 27 54 -139 93 -146 -1140 -139 61 104 -1140 142 61 -72 76 107 -139 -1140 -1140 161 107 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCGWKATAGTGTAAYGGYTATCAYRTSMS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 27 E= 8.5e-143 0.000000 0.000000 0.259259 0.740741 0.000000 0.740741 0.185185 0.074074 0.000000 0.740741 0.074074 0.185185 0.000000 0.222222 0.740741 0.037037 0.444444 0.148148 0.074074 0.333333 0.074074 0.000000 0.370370 0.555556 0.851852 0.000000 0.074074 0.074074 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.703704 0.296296 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.740741 0.000000 0.259259 0.000000 0.000000 0.518519 0.000000 0.481481 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.518519 0.000000 0.481481 0.000000 0.296296 0.000000 0.703704 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.296296 0.703704 0.296296 0.703704 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.629630 0.000000 0.370370 0.444444 0.074074 0.370370 0.111111 0.000000 0.074074 0.296296 0.629630 0.000000 0.518519 0.296296 0.185185 0.518519 0.407407 0.074074 0.000000 0.000000 0.592593 0.407407 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCGWKATAGTGTAAYGGYTATCAYRTSMS MEME-3 regular expression -------------------------------------------------------------------------------- [TG]CC[GC][AT][TG]ATAGT[GT]TA[AG][CT]GG[CT][TC]A[TG][CA]A[CT][AG][TG][CG][AC][CG] -------------------------------------------------------------------------------- Time 873.24 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:448467-448891 7.41e-17 31_[+1(5.64e-11)]_1_[-3(1.46e-11)]_\ 8 chrXII:899335-899642 4.17e-01 100 chrI:78503-78899 1.11e-01 100 chrXV:678883-679155 7.80e-01 100 chrXVI:718380-719018 5.53e-01 100 chrXV:216292-216664 6.52e-01 100 chrVI:210512-210863 1.17e-03 44_[-2(4.95e-06)]_35 chrIII:229588-229984 3.82e-01 100 chrXIV:230301-230697 1.30e-01 14_[+1(8.57e-05)]_56 chrXIII:915011-915305 8.86e-01 100 chrVII:366119-366595 7.54e-01 100 chrXII:806046-806528 4.34e-01 100 chrVIII:237738-238096 5.00e-05 46_[-2(2.02e-07)]_33 chrVII:110441-110825 4.81e-05 52_[+1(4.58e-09)]_18 chrII:304822-305218 3.67e-01 100 chrXI:578800-579202 4.80e-08 18_[+2(2.38e-08)]_29_[-1(6.98e-05)]_\ 2 chrXVI:642626-642803 7.12e-02 100 chrVII:779447-779828 2.90e-15 28_[+3(9.19e-11)]_1_[-1(3.61e-10)]_\ 11 chrX:620438-620538 8.88e-01 100 chrX:75400-75500 4.99e-01 100 chrX:74074-74174 9.47e-01 100 chrV:423134-423445 5.15e-01 100 chrXIII:379200-379575 1.74e-03 45_[-2(2.92e-06)]_34 chrV:78294-78982 3.02e-01 100 chrXIV:413771-414167 9.17e-01 100 chrXIII:372336-372616 2.14e-10 29_[+1(2.21e-09)]_7_[-2(5.99e-08)]_\ 13 chrXII:371076-371472 2.99e-01 100 chrXIV:63919-64129 3.48e-01 100 chrX:348893-348993 1.95e-01 100 chrXIII:887296-887692 3.86e-04 37_[-3(1.65e-05)]_33 chrIV:230404-230575 8.03e-01 100 chrXII:592411-592773 2.82e-06 51_[-2(9.59e-10)]_28 chrXII:857041-857437 7.29e-02 100 chrVII:661575-661916 2.38e-03 58_[+2(6.73e-07)]_21 chrVII:310545-310870 9.51e-01 100 chrIV:1278636-1279032 1.20e-01 100 chrXII:731967-732276 2.82e-06 23_[+2(9.59e-10)]_56 chrXIII:220187-220583 2.74e-01 100 chrXV:779733-780999 2.31e-01 100 chrIII:315543-315939 1.45e-01 100 chrXII:710652-710883 1.18e-01 100 chrIX:316897-317229 7.54e-01 100 chrV:117751-118257 4.86e-01 100 chrVI:221792-222021 4.92e-01 100 chrIX:388272-388475 9.85e-01 100 chrV:441834-442591 1.07e-01 100 chrX:190079-190179 7.17e-01 100 chrXIV:282631-283027 4.23e-01 100 chrVIII:74995-75349 6.98e-01 100 chrXI:364774-365142 6.64e-01 100 chrVII:277930-278208 2.09e-01 100 chrXV:228171-228509 5.56e-05 45_[+2(1.86e-08)]_34 chrXV:505841-506237 2.24e-01 100 chrIV:1489109-1489877 8.65e-01 100 chrXI:258658-258951 2.88e-01 100 chrXVI:586577-586973 6.84e-01 100 chrXII:636838-637519 7.51e-01 100 chrVII:555375-555661 4.20e-01 100 chrXIII:891275-891671 1.53e-01 100 chrVII:185584-185933 1.43e-12 16_[+1(2.23e-11)]_6_[-2(2.10e-08)]_\ 27 chrXII:806001-806528 5.27e-01 100 chrXVI:173246-173892 9.55e-01 100 chrIV:217258-217430 3.97e-01 100 chrXVI:794566-794752 9.73e-01 100 chrIV:1175712-1176012 1.01e-08 21_[+2(1.14e-06)]_6_[-1(2.75e-08)]_\ 22 chrII:332360-332698 6.40e-01 100 chrIX:316170-316569 8.45e-02 100 chrXV:854492-854888 1.25e-01 9_[+3(7.87e-05)]_61 chrVII:610999-611395 9.86e-01 100 chrXI:695-1091 4.62e-01 100 chrXI:261489-261687 6.64e-01 100 chrVII:319722-319984 3.24e-05 8_[-1(4.58e-09)]_62 chrXIII:388366-388560 4.83e-02 100 chrIV:1490112-1490373 3.27e-01 100 chrVIII:35211-36031 1.99e-01 100 chrVII:738959-739330 1.34e-13 32_[+2(3.12e-10)]_7_[-1(6.40e-11)]_\ 10 chrXIII:747735-748136 3.60e-10 17_[+1(7.25e-11)]_5_[-2(8.49e-07)]_\ 27 chrIX:427195-427847 3.17e-01 100 chrVII:534830-535172 6.55e-01 100 chrXVI:795628-795850 6.89e-01 100 chrX:415854-415954 1.74e-03 35_[-2(2.92e-06)]_44 chrXII:639612-640008 9.07e-01 100 chrIII:295314-295684 5.98e-12 39_[+2(9.66e-09)]_6_[-1(4.45e-10)]_\ 4 chrXIII:223095-223219 1.10e-01 100 chrXV:832367-832734 9.30e-01 100 chrXII:838569-839093 4.01e-01 100 chrVI:220362-220758 3.11e-01 100 chrIX:255399-255795 6.59e-01 100 chrI:71793-72966 2.31e-01 100 chrXII:424146-424381 3.89e-01 100 chrXVI:406223-406509 1.38e-01 40_[+3(8.32e-05)]_30 chrXIV:234259-234655 4.12e-01 100 chrXIII:550510-550906 9.68e-02 100 chrVIII:34505-35098 9.74e-01 100 chrV:396790-397186 2.73e-01 100 chrIX:325718-326102 9.66e-01 100 chrII:604754-604977 8.86e-01 100 chrXI:334364-334525 8.36e-01 100 chrV:152102-152498 8.87e-01 100 chrXII:704339-704593 8.59e-01 100 chrIII:149754-150103 1.45e-04 46_[+2(3.47e-07)]_33 chrIV:568723-569164 1.33e-17 19_[-1(7.25e-11)]_21_[+3(1.11e-12)] chrX:139198-139298 4.00e-01 100 chrXVI:280675-281784 4.39e-03 37_[+2(1.01e-05)]_42 chrVII:364142-364538 4.44e-01 100 chrXII:369335-370320 4.03e-01 100 chrVII:987363-987645 1.89e-01 100 chrIV:1401505-1401901 6.12e-01 100 chrIX:256697-257093 7.53e-01 100 chrXII:39840-40236 5.74e-02 64_[-3(3.20e-05)]_6 chrXIII:289355-289751 8.04e-01 100 chrXIII:259025-259406 6.41e-13 3_[+1(1.24e-08)]_15_[-2(4.13e-12)]_\ 31 chrXIII:195941-196324 4.51e-05 62_[-2(2.92e-06)]_17 chrX:227750-227850 9.76e-01 100 chrXVI:880183-880533 2.10e-06 35_[-2(3.12e-10)]_44 chrVII:56627-57023 1.33e-01 100 chrVII:557021-557417 9.78e-01 100 chrIX:129798-130194 9.54e-01 100 chrVII:328428-328829 1.86e-22 4_[+3(1.75e-17)]_1_[-1(1.38e-12)]_\ 35 chrI:182931-183031 9.95e-01 100 chrX:424317-424417 4.44e-06 34_[-2(2.60e-09)]_45 chrXIV:303273-303508 6.01e-01 100 chrII:301379-301645 8.39e-01 100 chrII:60887-61208 9.79e-01 100 chrIV:992696-993029 8.17e-14 24_[+2(6.21e-07)]_4_[-1(2.64e-13)]_\ 21 chrXII:793744-794234 5.31e-06 9_[-1(1.30e-09)]_61 chrXII:951638-951801 3.72e-01 100 chrII:406602-406998 8.04e-01 100 chrV:424910-425198 7.62e-01 100 chrXIV:302812-303265 1.14e-01 100 chrX:541398-541498 2.09e-16 17_[+3(1.11e-12)]_1_[-1(1.30e-09)]_\ 22 chrI:182418-182634 6.11e-05 56_[+1(1.24e-08)]_14 chrVIII:121498-121664 1.10e-01 100 chrVII:481312-482739 2.97e-01 100 chrIV:411299-411608 3.18e-02 55_[-2(8.43e-05)]_24 chrXVI:587193-587589 1.00e+00 100 chrV:306419-306815 8.95e-03 100 chrXVI:435766-436142 1.08e-03 34_[-2(1.32e-06)]_45 chrXV:796989-797299 1.14e-01 100 chrX:744994-745094 2.58e-01 100 chrIX:394663-395144 7.76e-01 100 chrVI:226597-226912 3.41e-05 30_[-2(2.10e-08)]_49 chrII:89005-89401 8.72e-01 100 chrV:140514-140842 9.74e-01 100 chrVIII:555824-556220 6.49e-01 100 chrXII:460372-460830 4.82e-01 100 chrVII:323747-324121 8.00e-01 100 chrXII:263587-263906 4.77e-01 100 chrXI:431967-432363 8.93e-01 100 chrXIV:569773-570004 1.34e-13 39_[+1(6.40e-11)]_7_[-2(3.12e-10)]_\ 3 chrII:168511-168907 9.07e-01 100 chrVII:55800-56196 7.75e-01 100 chrII:167960-168146 2.96e-01 100 chrVII:845473-845865 8.17e-14 34_[+2(6.21e-07)]_4_[-1(2.64e-13)]_\ 11 chrXI:518864-519229 3.56e-01 100 chrXVI:821837-822245 4.47e-01 100 chrVII:310985-312167 1.05e-01 100 chrV:86380-86815 1.05e-07 61_[+2(4.13e-12)]_18 chrXVI:303341-303666 6.81e-01 100 chrIII:178381-178630 9.92e-01 100 chrXII:241665-241979 9.52e-01 100 chrIV:437626-437965 6.41e-13 31_[+2(4.13e-12)]_15_[-1(1.24e-08)]_\ 3 chrII:45050-45322 3.40e-01 100 chrXVI:210083-210417 1.86e-22 2_[+1(1.38e-12)]_1_[-3(1.75e-17)]_\ 37 chrXIII:626603-626912 9.99e-01 100 chrXII:232098-234240 1.26e-01 100 chrVIII:103942-104186 9.47e-01 100 chrXV:520678-520877 5.32e-02 100 chrXV:226502-226837 8.17e-14 2_[+1(2.64e-13)]_4_[-2(6.21e-07)]_\ 43 chrV:85112-86464 7.20e-01 100 chrVIII:382310-382706 8.77e-01 100 chrX:414808-414908 5.27e-05 52_[+2(2.10e-08)]_27 chrIX:68265-68503 9.80e-01 100 chrXII:713181-713527 9.96e-01 100 chrIV:555765-556196 3.61e-02 100 chrII:397503-397899 6.76e-01 100 chrV:424753-425198 2.02e-01 100 chrXII:426964-427309 2.36e-10 45_[+3(1.11e-12)]_25 chrXVI:302736-302935 9.31e-01 100 chrV:476110-476506 3.13e-01 100 chrXI:308036-308378 6.16e-05 34_[-2(5.99e-08)]_45 chrIV:1075329-1075705 3.01e-14 15_[+1(4.58e-09)]_2_[-3(3.56e-11)]_\ 23 chrXIV:26147-26543 7.99e-01 100 chrXIII:296821-298851 6.61e-01 100 chrII:256421-256570 3.57e-01 100 chrVII:138323-138719 2.63e-01 100 chrIV:1270061-1270397 1.74e-02 100 chrV:138508-138907 3.88e-10 13_[+2(8.49e-07)]_5_[-1(7.25e-11)]_\ 31 chrIII:382-502 1.89e-02 20_[-3(8.16e-05)]_50 chrIII:82376-82676 2.39e-13 27_[-3(1.75e-17)]_43 chrVI:55192-55588 8.24e-02 100 chrVII:401441-401629 2.98e-08 52_[+1(1.38e-12)]_18 chrXIII:556167-556563 8.99e-01 100 chrXIII:306126-306446 6.62e-01 100 chrX:526226-526326 4.45e-01 100 chrVII:1004071-1004390 1.46e-08 40_[+2(6.73e-07)]_5_[-1(1.42e-08)]_\ 4 chrX:172887-172986 9.89e-01 99 chrVIII:226344-226740 2.57e-01 100 chrXV:1028736-1029059 9.71e-01 100 chrXII:253711-254107 1.91e-02 3_[+1(8.79e-05)]_67 chrVI:82832-83059 4.44e-01 100 chrVIII:381452-382076 7.11e-01 100 chrIX:324201-324402 1.56e-05 62_[+1(1.30e-09)]_8 chrXI:490790-491118 1.87e-05 68_[+2(1.60e-09)]_11 chrIII:142590-142934 1.61e-04 33_[-2(6.21e-07)]_46 chrV:69060-69366 4.04e-02 100 chrIV:449720-450116 2.02e-01 100 chrXV:87971-88367 8.47e-01 100 chrVI:31161-31557 4.85e-01 100 chrXI:162321-162710 3.88e-10 32_[+1(7.25e-11)]_5_[-2(8.49e-07)]_\ 12 chrX:652056-652156 9.42e-01 100 chrII:306974-307370 7.96e-01 100 chrVIII:147921-148075 4.78e-01 100 chrIV:356658-356859 9.66e-02 100 chrIV:1013091-1013487 8.12e-01 100 chrXIII:226053-226449 7.94e-01 100 chrIV:1302034-1302430 4.65e-01 100 chrV:266272-266668 3.35e-01 100 chrXV:80607-80856 9.68e-01 100 chrV:141028-141361 3.38e-01 100 chrXII:257794-258190 1.37e-01 100 chrXI:558803-559118 5.03e-01 100 chrXII:638735-638921 6.42e-01 100 chrIX:370245-370601 2.39e-13 43_[+3(1.75e-17)]_27 chrIII:162830-163226 5.88e-02 46_[-3(6.72e-05)]_24 chrXV:505151-505459 8.44e-01 100 chrIII:227774-228177 4.48e-06 21_[+2(4.60e-10)]_58 chrXV:110819-111157 2.90e-15 34_[+1(3.61e-10)]_1_[-3(9.19e-11)]_\ 5 chrVII:56417-56813 1.96e-01 100 chrVIII:466826-467133 4.21e-03 65_[+2(6.73e-07)]_14 chrVII:149155-149482 1.89e-01 100 chrVII:774186-774542 4.09e-14 39_[+2(4.78e-09)]_6_[-1(8.21e-11)]_\ 4 chrV:135292-135639 1.43e-12 20_[+1(2.23e-11)]_6_[-2(2.10e-08)]_\ 23 chrIV:308033-308340 4.39e-01 100 chrIV:541260-541818 5.05e-01 100 chrXIV:577075-577471 2.62e-01 100 chrVII:541697-542118 2.61e-08 23_[-1(1.38e-12)]_47 chrXIV:575276-575485 8.22e-01 100 chrXV:353935-354279 2.66e-05 30_[-2(9.66e-09)]_49 chrXV:908689-908841 5.52e-01 100 chrV:491074-491388 4.44e-02 100 chrIII:107507-107903 9.83e-01 100 chrV:131012-131324 6.00e-09 5_[-3(3.19e-11)]_65 chrVII:122133-122503 1.43e-12 5_[+2(2.10e-08)]_6_[-1(2.23e-11)]_\ 38 chrXII:198770-199700 6.11e-01 100 chrIV:217706-218102 9.08e-01 100 chrII:680356-680695 2.85e-01 100 chrXIII:352114-352455 2.13e-05 50_[+2(2.02e-07)]_29 chrXIV:499747-500820 8.31e-01 100 chrI:142809-143091 5.54e-01 100 chrV:267820-268216 8.82e-01 100 chrII:592927-593238 7.15e-01 100 chrIII:107230-107622 1.00e-01 100 chrV:408505-408901 9.52e-01 100 chrXV:866605-866905 3.78e-01 100 chrXIV:568023-568237 5.50e-05 39_[+2(2.92e-06)]_40 chrXII:281899-282295 4.41e-01 100 chrXIV:107756-108152 1.12e-01 100 chrXV:340153-340535 9.01e-12 15_[+1(8.11e-10)]_6_[-2(1.60e-09)]_\ 28 chrIX:99673-99988 8.68e-01 100 chrV:99962-100328 2.43e-05 42_[+2(3.47e-07)]_5_[-1(4.04e-05)]_\ 2 chrVII:857264-857641 8.27e-04 63_[-2(8.26e-08)]_16 chrVII:254162-254529 7.56e-01 100 chrX:617746-617846 5.60e-06 41_[+2(9.59e-10)]_38 chrVII:557615-558011 6.59e-02 100 chrIV:331211-331607 1.21e-02 100 chrV:434455-434772 4.03e-02 19_[-3(6.08e-05)]_51 chrIV:44137-44533 1.77e-01 100 chrXV:444702-445658 2.30e-01 100 chrVIII:388784-389028 3.33e-06 47_[+1(4.95e-09)]_23 chrXVI:746138-746534 2.24e-01 100 chrIV:1161613-1161912 7.25e-01 100 chrX:374231-374331 2.09e-16 5_[+1(1.30e-09)]_1_[-3(1.11e-12)]_\ 34 chrXIV:568196-568592 6.93e-01 100 chrVIII:451278-452958 3.55e-01 100 chrVIII:17124-17321 2.24e-01 100 chrXI:513238-513559 2.36e-10 25_[-3(1.11e-12)]_45 chrIX:248676-249050 1.15e-06 41_[+2(4.60e-10)]_38 chrII:393515-393714 3.70e-01 100 chrXVI:744132-744506 1.46e-08 19_[+2(6.73e-07)]_5_[-1(1.42e-08)]_\ 25 chrIV:1359443-1359779 9.80e-01 100 chrIV:83381-83743 8.17e-14 40_[+2(6.21e-07)]_4_[-1(2.64e-13)]_\ 5 chrX:391886-391986 1.11e-01 100 chrVII:545488-545682 7.05e-01 100 chrVIII:146066-146448 8.59e-08 45_[+1(8.21e-11)]_25 chrXVI:699984-700332 4.45e-01 100 chrV:438563-438877 2.14e-10 34_[+2(5.99e-08)]_7_[-1(2.21e-09)]_\ 8 chrIV:1352239-1352677 3.02e-08 68_[+1(2.23e-11)]_2 chrVII:422914-423332 6.06e-04 23_[+2(8.26e-08)]_56 chrV:61195-62128 3.56e-01 100 chrIV:599851-600142 6.76e-01 100 chrXIV:525053-525194 4.13e-02 14_[-3(8.02e-05)]_56 chrXII:1012166-1012331 3.49e-02 33_[+1(8.57e-05)]_37 chrVII:672582-672978 3.01e-01 100 chrIII:177403-177600 8.59e-01 100 chrX:622513-622613 4.07e-01 100 chrVIII:75767-75887 5.84e-01 100 chrXIII:500350-500566 5.55e-01 100 chrVII:702913-703253 1.00e+00 100 chrXV:384752-384997 4.86e-01 100 chrII:477066-477458 8.03e-01 100 chrXII:201904-202398 5.97e-01 100 chrXV:867646-868042 7.08e-01 100 chrVI:31973-32180 6.16e-01 100 chrXII:645799-646195 1.48e-01 100 chrXVI:214925-215131 9.87e-01 100 chrIV:130585-130926 8.89e-01 100 chrVII:609451-610076 7.18e-01 100 chrVII:399305-399484 1.70e-02 100 chrXII:628204-628627 8.27e-04 22_[+2(8.26e-08)]_57 chrII:681102-681502 8.04e-01 100 chrX:531662-531762 2.05e-12 2_[+2(6.21e-07)]_4_[-1(2.64e-13)]_\ 43 chrXVI:75589-75701 1.64e-03 59_[+2(1.63e-06)]_20 chrII:645013-645354 1.86e-22 33_[+3(1.75e-17)]_1_[-1(1.38e-12)]_\ 6 chrX:120616-120716 6.12e-01 100 chrIV:1017060-1017456 6.92e-21 9_[+1(3.20e-13)]_1_[-3(4.36e-15)]_\ 30 chrV:269211-269607 7.38e-01 100 chrXV:253124-253520 4.93e-01 100 chrX:76205-76305 8.08e-01 100 chrI:70455-70851 6.02e-02 100 chrII:405717-406142 3.88e-10 3_[+2(8.49e-07)]_5_[-1(7.25e-11)]_\ 41 chrXIV:495235-495549 8.81e-01 100 chrV:504375-504771 9.44e-01 100 chrXV:445888-446141 2.68e-01 100 chrVII:611715-612111 5.11e-01 100 chrII:604144-604449 2.06e-01 100 chrIV:619853-620185 9.01e-12 10_[+1(8.11e-10)]_6_[-2(1.60e-09)]_\ 33 chrXIII:91856-92067 3.86e-01 100 chrV:475909-476305 3.51e-01 100 chrXII:962866-963232 3.91e-06 30_[-2(2.60e-09)]_49 chrVII:399736-399908 5.33e-01 100 chrX:122348-122448 8.65e-01 100 chrIII:177170-177409 9.60e-01 100 chrX:663831-663931 3.54e-02 13_[+1(5.34e-05)]_57 chrXV:678034-678430 8.41e-02 9_[-1(4.16e-05)]_61 chrII:45986-46162 6.65e-01 100 chrII:606680-607076 5.09e-01 100 chrXII:722817-723213 9.19e-01 100 chrVIII:132939-133113 8.03e-05 60_[+1(1.24e-08)]_10 chrXI:102342-102738 4.29e-01 100 chrXVI:451356-451752 7.01e-01 100 chrIII:123445-123797 5.64e-11 16_[+1(8.15e-13)]_54 chrXIV:413557-413953 2.23e-01 100 chrIV:1305472-1305833 5.65e-13 32_[+2(4.13e-12)]_16_[-1(1.09e-08)]_\ 1 chrV:435646-435978 1.43e-12 [+1(2.23e-11)]_6_[-2(2.10e-08)]_43 chrVI:162060-162389 1.37e-04 58_[+2(6.21e-07)]_21 chrXIII:162135-162531 2.99e-01 100 chrVI:64157-64553 9.14e-01 100 chrIV:835817-836111 3.88e-01 100 chrXVI:404978-405699 8.22e-01 100 chrVII:544461-544821 2.36e-10 27_[-3(1.11e-12)]_43 chrXIV:759353-759749 2.17e-01 100 chrII:45604-46000 6.25e-01 100 chrXV:758984-759549 9.40e-01 100 chrIV:1239454-1239850 7.41e-01 100 chrIV:392540-392936 4.37e-01 100 chrXII:795160-795321 9.47e-01 100 chrXII:1028273-1028535 6.28e-01 100 chrIX:138411-138964 8.75e-01 100 chrVI:157828-158163 5.00e-05 36_[-2(2.02e-07)]_43 chrXI:142498-142894 4.36e-02 15_[+2(9.29e-05)]_64 chrXIV:174325-174538 8.34e-01 100 chrIX:254292-254500 1.22e-01 100 chrIV:410217-410568 4.09e-14 41_[+2(4.78e-09)]_6_[-1(8.21e-11)]_\ 2 chrIV:1402227-1402340 1.01e-01 100 chrVII:1050208-1050505 7.96e-01 100 chrV:122074-122470 5.11e-01 100 chrIX:257406-257648 1.93e-01 100 chrXII:498942-499576 5.20e-01 100 chrII:592271-592667 8.59e-01 100 chrXI:38991-39193 9.44e-01 100 chrV:42151-42423 5.63e-01 100 chrXV:968171-968329 2.00e-02 100 chrX:354081-354181 4.09e-04 29_[+2(4.95e-06)]_50 chrXII:712316-712712 9.59e-01 100 chrIV:525734-526130 3.41e-01 100 chrVI:82609-82813 1.58e-02 9_[+1(7.74e-05)]_61 chrXII:949468-949864 6.04e-01 100 chrIV:601300-601529 5.15e-01 100 chrX:224273-224373 9.38e-01 100 chrXIII:861198-861396 8.44e-02 100 chrX:606347-606447 4.42e-01 100 chrV:431014-431521 3.01e-01 100 chrX:115824-115924 1.90e-13 22_[-3(1.75e-17)]_48 chrIX:386670-386913 3.35e-01 100 chrX:703293-703393 8.55e-01 100 chrIX:197432-197760 2.23e-11 45_[+3(4.36e-15)]_25 chrIV:465176-465511 5.65e-01 100 chrXV:29331-29727 1.99e-01 100 chrIV:118329-118725 2.38e-01 100 chrV:52866-53262 7.14e-01 100 chrIV:1256905-1257257 3.20e-04 22_[-2(9.67e-06)]_57 chrXV:912073-912469 9.10e-01 100 chrI:35838-36234 1.32e-01 100 chrV:151897-152293 9.92e-01 100 chrIX:380545-380941 3.16e-01 100 chrIV:667886-668254 2.10e-06 34_[-2(3.12e-10)]_45 chrVII:440565-440991 5.00e-05 53_[-2(2.02e-07)]_26 chrXI:432576-432972 8.97e-01 100 chrII:642910-643249 1.63e-03 23_[-2(1.32e-06)]_56 chrVII:878578-878976 1.74e-03 62_[-2(2.92e-06)]_17 chrVII:438609-438878 6.97e-01 100 chrIX:317246-317424 7.13e-01 100 chrIX:97271-97458 8.75e-01 100 chrXII:793744-794237 5.31e-06 8_[-1(1.30e-09)]_62 chrXII:784174-784558 7.57e-07 42_[+2(1.07e-10)]_37 chrXII:897752-898010 6.51e-01 100 chrIV:519622-519926 2.55e-09 23_[+2(2.60e-09)]_17_[-1(1.30e-07)]_\ 9 chrXII:263724-264120 8.27e-01 100 chrXVI:188654-188920 4.38e-02 100 chrVII:921076-921472 2.74e-01 100 chrIV:1402814-1403373 9.77e-01 100 chrXII:374189-374566 9.01e-12 32_[+2(1.60e-09)]_6_[-1(8.11e-10)]_\ 11 chrXIII:290627-290996 1.86e-22 39_[+3(1.75e-17)]_1_[-1(1.38e-12)] chrVIII:115966-116348 2.40e-11 10_[+1(4.45e-10)]_6_[-2(9.66e-09)]_\ 33 chrXV:977834-978230 7.52e-01 100 chrVII:431-827 8.56e-01 100 chrXII:506963-507359 7.82e-02 100 chrX:651323-651423 4.80e-01 100 chrI:151442-151838 1.48e-01 100 chrII:681497-681848 8.71e-01 100 chrIV:579109-579320 4.87e-01 100 chrVII:700496-701212 8.33e-01 100 chrX:197182-197282 4.93e-12 43_[+1(8.21e-11)]_6_[-2(4.78e-09)] chrXII:922152-922499 6.01e-01 100 chrIV:117212-117556 8.59e-01 100 chrXIII:507951-508347 7.87e-01 100 chrXIV:664477-664873 5.05e-01 100 chrXVI:689402-689812 5.43e-09 12_[+2(4.60e-10)]_15_[-1(3.38e-06)]_\ 22 chrXII:952370-952766 9.85e-01 100 chrIX:177659-177954 7.63e-01 100 chrXVI:95552-95948 9.69e-01 100 chrII:413875-414271 2.07e-01 100 chrIV:769627-770023 1.08e-01 100 chrVII:823317-823689 2.14e-10 33_[+2(5.99e-08)]_7_[-1(2.21e-09)]_\ 9 chrVII:876230-876598 1.43e-12 34_[+2(2.10e-08)]_6_[-1(2.23e-11)]_\ 9 chrIII:30600-30797 9.94e-01 100 chrX:121860-121960 1.00e+00 100 chrXII:794173-795164 4.22e-01 100 chrVIII:382952-383294 9.82e-01 100 chrXI:259215-259611 6.46e-02 100 chrVII:788367-788694 5.28e-01 100 chrXII:932115-932455 8.61e-01 100 chrVII:439528-439826 9.33e-01 100 chrII:556648-557044 1.07e-01 100 chrXV:288025-288381 3.01e-03 43_[+2(4.95e-06)]_36 chrXVI:810569-810828 3.15e-09 32_[+2(1.86e-08)]_7_[-1(4.23e-08)]_\ 10 chrX:608473-608573 5.88e-01 100 chrXI:552031-552427 3.66e-01 100 chrIV:117829-118225 9.86e-01 100 chrVII:807292-807688 5.75e-01 100 chrXV:680440-680836 1.00e+00 100 chrX:355210-355310 1.33e-17 1_[-1(7.25e-11)]_21_[+3(1.11e-12)]_\ 18 chrXV:854057-854308 9.68e-09 65_[+1(1.95e-12)]_5 chrXI:355356-355709 3.72e-01 100 chrII:235430-235826 2.74e-01 100 chrXII:366081-366451 1.86e-01 100 chrI:166138-166466 3.99e-14 19_[+2(4.78e-09)]_6_[-1(1.95e-12)]_\ 24 chrXI:458445-458789 5.57e-02 62_[-1(2.36e-05)]_8 chrVII:365121-365315 9.81e-01 100 chrIV:976168-976478 1.61e-01 100 chrXV:160293-160763 8.84e-01 100 chrX:608676-608776 6.47e-01 100 chrXV:159253-160169 5.46e-02 100 chrXV:409520-409916 5.81e-01 100 chrXIV:351983-352291 4.41e-01 100 chrXVI:134898-135294 5.62e-01 100 chrVIII:475579-475936 3.01e-14 9_[+1(4.58e-09)]_2_[-3(3.56e-11)]_\ 29 chrXVI:769096-769485 1.32e-06 36_[-2(2.38e-08)]_43 chrIII:163504-163846 6.33e-02 100 chrXV:92977-93488 2.10e-01 100 chrXIII:753782-754178 8.66e-01 100 chrXV:900911-901307 7.01e-01 100 chrVI:101207-101556 2.63e-05 49_[+2(2.92e-06)]_30 chrXII:838113-838582 2.56e-01 100 chrXII:253912-254308 9.99e-01 100 chrX:90107-90207 9.08e-01 100 chrVIII:494521-494917 5.12e-01 100 chrXV:438478-438870 1.32e-06 23_[+2(2.38e-08)]_56 chrV:225441-225681 3.66e-01 100 chrXV:282005-282347 8.17e-14 42_[+2(6.21e-07)]_4_[-1(2.64e-13)]_\ 3 chrVII:727242-727437 3.51e-01 100 chrXV:254357-254753 6.37e-01 100 chrXV:571800-572129 1.05e-10 43_[+3(1.11e-12)]_27 chrVII:648996-649310 7.75e-01 100 chrXII:839031-839218 1.59e-01 100 chrXVI:378700-378920 3.45e-01 100 chrXVI:55997-56435 5.27e-07 13_[+1(6.40e-11)]_57 chrXI:326152-327584 2.44e-01 100 chrXII:856263-856392 2.51e-01 100 chrVII:533875-534271 9.71e-01 100 chrXV:87737-88133 3.07e-01 100 chrI:28532-28928 9.21e-01 100 chrXII:95470-95866 5.90e-01 100 chrXV:978836-979061 3.60e-01 100 chrIV:980821-981195 5.21e-13 26_[+1(1.24e-08)]_15_[-2(4.13e-12)]_\ 8 chrXI:108788-109052 6.45e-01 100 chrXII:459511-460165 6.00e-01 100 chrII:88113-88553 4.26e-01 100 chrXII:809181-809577 8.51e-01 100 chrXII:875207-875594 1.32e-06 30_[+2(2.38e-08)]_49 chrIII:229383-229779 4.27e-01 100 chrXII:734637-734977 2.10e-06 49_[+2(3.12e-10)]_30 chrXV:725246-725642 9.94e-01 100 chrV:250239-250488 7.97e-07 3_[-1(5.64e-11)]_67 chrXV:671081-671418 8.21e-01 100 chrXIV:715962-716608 4.83e-02 36_[+3(4.39e-05)]_34 chrXV:619877-620273 2.25e-01 100 chrVIII:411075-411642 6.21e-01 100 chrIX:332886-333103 5.88e-01 100 chrXIV:88943-89753 9.63e-01 100 chrXIV:331995-332391 5.92e-01 100 chrXIII:267981-268282 9.19e-01 100 chrVIII:125961-126272 5.00e-01 100 chrV:305820-306169 7.46e-01 100 chrV:311858-312252 3.99e-14 28_[+1(1.95e-12)]_6_[-2(4.78e-09)]_\ 15 chrIV:434077-434448 1.46e-06 62_[+1(4.45e-10)]_8 chrV:53557-53878 9.43e-01 100 chrXIV:628429-628825 6.19e-01 100 chrIII:90827-91075 4.48e-02 30_[-1(2.36e-05)]_40 chrXII:728302-728486 2.66e-01 100 chrIII:138627-138758 5.86e-01 100 chrXV:424230-424588 1.44e-01 100 chrV:492232-492602 6.76e-06 31_[-2(1.60e-09)]_48 chrXIII:420458-420822 2.14e-10 8_[+1(2.21e-09)]_7_[-2(5.99e-08)]_\ 34 chrXIV:519005-519145 1.28e-01 100 chrVIII:554505-554901 6.96e-02 100 chrXII:522998-523394 2.35e-01 100 chrXIII:754464-754694 9.50e-01 100 chrVI:95500-95814 1.35e-01 100 chrIV:520799-521134 4.41e-10 55_[+3(1.46e-11)]_15 chrII:236621-237017 4.47e-01 100 chrVII:278528-278641 2.83e-01 100 chrXIII:507751-508147 9.83e-02 100 chrXIV:25941-26337 1.67e-05 33_[-1(5.49e-05)]_[-2(8.49e-07)]_16 chrV:77580-77835 5.52e-01 100 chrII:226933-227290 5.21e-13 18_[+2(4.13e-12)]_15_[-1(1.24e-08)]_\ 16 chrXII:797009-797356 1.79e-13 45_[+3(1.75e-17)]_25 chrV:469293-469644 1.07e-04 43_[+2(5.99e-08)]_36 chrXI:159106-159502 9.04e-01 100 chrIV:538973-539187 2.33e-01 100 chrXIV:771878-772404 1.10e-01 100 chrVI:223329-223543 4.99e-01 100 chrXIII:762609-763005 8.56e-01 100 chrXIV:102551-102990 3.15e-09 [+2(1.86e-08)]_7_[-1(4.23e-08)]_42 chrIII:142000-142396 2.68e-02 100 chrXII:370471-370812 9.07e-02 100 chrV:487220-487555 1.86e-22 4_[+1(1.38e-12)]_1_[-3(1.75e-17)]_\ 35 chrI:142229-142399 6.65e-01 100 chrV:23528-23878 3.84e-01 100 chrVII:766161-766480 8.64e-03 42_[-2(1.01e-05)]_37 chrXI:46663-46966 2.41e-03 16_[-2(1.14e-06)]_63 chrXV:391615-391903 9.89e-01 100 chrXI:164194-164336 8.43e-01 100 chrIV:1300971-1301284 8.67e-01 100 chrXV:900708-901104 1.68e-01 100 chrVII:648055-648451 3.79e-01 100 chrXV:407938-408118 1.57e-01 100 chrXIV:499726-500820 4.74e-01 100 chrXIII:551394-551768 9.73e-01 100 chrV:354765-355167 1.86e-22 17_[+3(1.75e-17)]_1_[-1(1.38e-12)]_\ 22 chrXI:99649-100045 5.92e-01 100 chrVIII:505851-506158 6.21e-01 100 chrXII:1029869-1030265 2.19e-02 100 chrXV:29105-29501 3.31e-02 100 chrXVI:860210-860585 8.17e-14 36_[+2(6.21e-07)]_4_[-1(2.64e-13)]_\ 9 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************