Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.014096
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.056769
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.073576
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.013906
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.064843
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background
Finished invoke:
  name: bg  status: 0  time: 0.011408
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 850.854544
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 78.631404
Invoking:
  centrimo -seqlen 396 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.222491
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.421196
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background -primary BDTGGCBYAGTKGKWARRGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.380437
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background -primary RATGTAYGGRTGYW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.297322
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background -primary TCGAACCB /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.239007
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background -primary RAGAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.270595
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background -primary CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.211742
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background -primary GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.208412
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background -primary CCAAVAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.215923
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background -primary CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.23721
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background -primary AACTKGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.218594
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.20297
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background -primary CGTTGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.213834
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background -primary CACTATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.211282
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background -primary CGCGKGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.213078
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background -primary AKATTAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.237474
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background -primary AGYCAGAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.210647
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background --motif BDTGGCBYAGTKGKWARRGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.240542
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background --motif RATGTAYGGRTGYW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.221492
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background --motif TCGAACCB /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.139069
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background --motif RAGAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.134038
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background --motif CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.15106
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background --motif GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.166895
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background --motif CCAAVAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.15194
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background --motif CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.142795
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background --motif AACTKGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.156066
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.155067
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background --motif CGTTGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.146476
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background --motif CACTATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.129406
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background --motif CGCGKGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.147544
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background --motif AKATTAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.134757
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background --motif AGYCAGAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/RM11-1A--MCM1.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.151811
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.184009
Done