******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrVII:254187-254526 1.0000 100 chrVIII:411129-411617 1.0000 100 chrXVI:580328-580724 1.0000 100 chrXV:980557-980881 1.0000 100 chrXI:108847-109013 1.0000 100 chrXI:518851-519333 1.0000 100 chrIII:142596-142937 1.0000 100 chrII:163755-164151 1.0000 100 chrIX:24960-25356 1.0000 100 chrXIV:88937-89679 1.0000 100 chrV:53584-53858 1.0000 100 chrXIV:174148-174544 1.0000 100 chrXVI:819348-819766 1.0000 100 chrXV:228165-228508 1.0000 100 chrXIII:277454-277850 1.0000 100 chrXII:962885-963219 1.0000 100 chrX:651379-651479 1.0000 100 chrXII:374186-374534 1.0000 100 chrXV:722977-723373 1.0000 100 chrVII:738967-739314 1.0000 100 chrVII:439511-439861 1.0000 100 chrVII:122128-122452 1.0000 100 chrVII:454482-454868 1.0000 100 chrVII:774185-774673 1.0000 100 chrV:300850-301246 1.0000 100 chrXVI:829093-829395 1.0000 100 chrXIV:187092-187488 1.0000 100 chrXIV:568033-568232 1.0000 100 chrXIII:267999-268235 1.0000 100 chrVII:307829-308225 1.0000 100 chrVII:960333-960525 1.0000 100 chrXI:490800-491119 1.0000 100 chrVIII:556055-556451 1.0000 100 chrV:77589-77938 1.0000 100 chrXVI:880197-880535 1.0000 100 chrV:223276-223672 1.0000 100 chrVII:149173-149476 1.0000 100 chrVIII:555838-556234 1.0000 100 chrVIII:466830-467138 1.0000 100 chrII:256435-256831 1.0000 100 chrXII:460413-460780 1.0000 100 chrVIII:451465-452878 1.0000 100 chrXV:110868-111164 1.0000 100 chrIV:1489128-1489756 1.0000 100 chrX:76062-76162 1.0000 100 chrXV:778988-779384 1.0000 100 chrVIII:147938-148051 1.0000 100 chrII:235116-235512 1.0000 100 chrX:119929-120029 1.0000 100 chrXVI:580528-580924 1.0000 100 chrXIV:230387-230549 1.0000 100 chrX:378206-378306 1.0000 100 chrI:142822-143074 1.0000 100 chrXII:522990-523386 1.0000 100 chrXII:1019043-1019310 1.0000 100 chrII:89035-89431 1.0000 100 chrXII:201785-202333 1.0000 100 chrXIII:880556-880869 1.0000 100 chrIV:355615-356011 1.0000 100 chrV:130996-131306 1.0000 100 chrVIII:75712-75945 1.0000 100 chrXIII:754393-754789 1.0000 100 chrVII:365015-365411 1.0000 100 chrXVI:173315-173791 1.0000 100 chrX:354097-354197 1.0000 100 chrII:405722-406154 1.0000 100 chrV:443112-443383 1.0000 100 chrXI:284451-284649 1.0000 100 chrIV:1269988-1270384 1.0000 100 chrX:617758-617858 1.0000 100 chrXI:326232-327463 1.0000 100 chrXII:759156-759388 1.0000 100 chrXIV:575349-575548 1.0000 100 chrI:68249-68643 1.0000 100 chrIX:69112-69508 1.0000 100 chrXVI:622423-622805 1.0000 100 chrXI:162354-162694 1.0000 100 chrX:123387-123487 1.0000 100 chrIV:1150728-1151085 1.0000 100 chrVII:278230-278452 1.0000 100 chrX:415866-415966 1.0000 100 chrXV:306964-307360 1.0000 100 chrXIV:631741-632066 1.0000 100 chrXIII:288407-288507 1.0000 100 chrXVI:405044-405658 1.0000 100 chrXII:837988-838582 1.0000 100 chrIV:768408-768804 1.0000 100 chrX:126394-126494 1.0000 100 chrXIV:585755-586425 1.0000 100 chrXII:645003-645299 1.0000 100 chrXIV:726051-726360 1.0000 100 chrVII:289316-289704 1.0000 100 chrIV:568731-569155 1.0000 100 chrXV:978830-979092 1.0000 100 chrXIII:556147-556543 1.0000 100 chrIII:82364-82675 1.0000 100 chrII:605154-605550 1.0000 100 chrII:681039-681781 1.0000 100 chrXIII:861180-861402 1.0000 100 chrIV:83403-83706 1.0000 100 chrXI:567140-567536 1.0000 100 chrXV:254582-254978 1.0000 100 chrXII:838562-839148 1.0000 100 chrVII:480403-481356 1.0000 100 chrIII:163488-163827 1.0000 100 chrXII:232090-234077 1.0000 100 chrII:557402-557798 1.0000 100 chrXVI:377051-377447 1.0000 100 chrVI:53240-53636 1.0000 100 chrXI:520166-520277 1.0000 100 chrXI:513245-513547 1.0000 100 chrIV:1352272-1352664 1.0000 100 chrVIII:146133-146433 1.0000 100 chrXII:784198-784559 1.0000 100 chrXI:559145-559541 1.0000 100 chrIV:340660-341056 1.0000 100 chrXII:499077-499632 1.0000 100 chrIV:1075347-1075703 1.0000 100 chrV:28984-29380 1.0000 100 chrVIII:34544-35854 1.0000 100 chrXIII:163740-163868 1.0000 100 chrXIV:68473-68710 1.0000 100 chrXVI:435783-436137 1.0000 100 chrIV:980837-981174 1.0000 100 chrIV:1300998-1301250 1.0000 100 chrIII:241544-241940 1.0000 100 chrXII:932132-932449 1.0000 100 chrXII:638021-638641 1.0000 100 chrIII:228824-229019 1.0000 100 chrII:88144-88537 1.0000 100 chrXVI:744118-744487 1.0000 100 chrXI:558910-559306 1.0000 100 chrXVI:75489-75658 1.0000 100 chrV:381270-381666 1.0000 100 chrVII:599472-599868 1.0000 100 chrVIII:148034-148430 1.0000 100 chrXIII:480508-480859 1.0000 100 chrX:75411-75511 1.0000 100 chrVII:727864-728068 1.0000 100 chrII:311516-311878 1.0000 100 chrX:74699-74799 1.0000 100 chrXIV:96096-96492 1.0000 100 chrXIII:761842-762208 1.0000 100 chrXI:74445-74804 1.0000 100 chrXIV:663737-664051 1.0000 100 chrXII:1002314-1002710 1.0000 100 chrXVI:40370-40471 1.0000 100 chrVIII:381546-382045 1.0000 100 chrXI:334278-334674 1.0000 100 chrXIV:63174-63418 1.0000 100 chrXVI:692754-693150 1.0000 100 chrXIV:568356-568477 1.0000 100 chrII:226929-227290 1.0000 100 chrIV:117220-117526 1.0000 100 chrIX:99692-99953 1.0000 100 chrXI:571208-571406 1.0000 100 chrXII:366092-366461 1.0000 100 chrV:269220-269616 1.0000 100 chrXVI:56025-56444 1.0000 100 chrXII:721860-722256 1.0000 100 chrXIV:675786-676109 1.0000 100 chrX:204564-204664 1.0000 100 chrVII:878570-878977 1.0000 100 chrX:233765-233865 1.0000 100 chrX:139206-139306 1.0000 100 chrXII:639679-640075 1.0000 100 chrVII:319730-319945 1.0000 100 chrVII:442277-442673 1.0000 100 chrXI:430744-431140 1.0000 100 chrXIV:516676-517072 1.0000 100 chrX:663801-663901 1.0000 100 chrXIII:509803-510199 1.0000 100 chrI:182405-182643 1.0000 100 chrXII:448527-448866 1.0000 100 chrXIII:271539-271742 1.0000 100 chrX:424226-424326 1.0000 100 chrXIII:551405-551747 1.0000 100 chrVII:609673-609977 1.0000 100 chrXIII:168660-169087 1.0000 100 chrXIII:420463-420820 1.0000 100 chrVII:648273-648669 1.0000 100 chrIV:356209-356388 1.0000 100 chrVIII:105047-105443 1.0000 100 chrII:82300-82696 1.0000 100 chrXI:578799-579183 1.0000 100 chrVI:226600-226922 1.0000 100 chrII:332376-332685 1.0000 100 chrXIV:716159-716616 1.0000 100 chrV:467963-468076 1.0000 100 chrIV:626549-626945 1.0000 100 chrXIII:253356-253581 1.0000 100 chrXVI:297951-298347 1.0000 100 chrIV:1465940-1466085 1.0000 100 chrIV:1362374-1362615 1.0000 100 chrXVI:700533-700713 1.0000 100 chrXVI:114122-114518 1.0000 100 chrXVI:75794-75942 1.0000 100 chrX:620587-620687 1.0000 100 chrV:438554-438857 1.0000 100 chrIV:1080530-1080926 1.0000 100 chrIII:123472-123799 1.0000 100 chrII:605782-606076 1.0000 100 chrII:625372-625736 1.0000 100 chrII:255317-255713 1.0000 100 chrXV:274494-274897 1.0000 100 chrVII:483345-483765 1.0000 100 chrIV:117786-118182 1.0000 100 chrV:101186-101582 1.0000 100 chrVIII:85215-85353 1.0000 100 chrIX:197423-197736 1.0000 100 chrXII:793742-794224 1.0000 100 chrV:362882-363278 1.0000 100 chrXIII:220777-221173 1.0000 100 chrVII:399776-399994 1.0000 100 chrXV:159278-160162 1.0000 100 chrVII:422917-423328 1.0000 100 chrIX:317929-318325 1.0000 100 chrIX:210634-210869 1.0000 100 chrIX:68304-68453 1.0000 100 chrVII:736154-736560 1.0000 100 chrVII:961082-961478 1.0000 100 chrXV:226502-226837 1.0000 100 chrIV:520820-521157 1.0000 100 chrII:60914-61190 1.0000 100 chrXI:364859-365255 1.0000 100 chrXII:734640-734965 1.0000 100 chrXIV:721323-721719 1.0000 100 chrXV:30049-30281 1.0000 100 chrXIII:162346-162446 1.0000 100 chrXV:444972-445974 1.0000 100 chrV:176942-177347 1.0000 100 chrXI:308046-308380 1.0000 100 chrIV:392560-392956 1.0000 100 chrX:598317-598417 1.0000 100 chrXVI:378715-378896 1.0000 100 chrXV:300946-301304 1.0000 100 chrXVI:700012-700303 1.0000 100 chrXII:921171-921567 1.0000 100 chrXVI:856747-857119 1.0000 100 chrXVI:878625-879021 1.0000 100 chrVI:162073-162395 1.0000 100 chrXI:109406-109802 1.0000 100 chrXI:618858-619150 1.0000 100 chrXIV:302940-303261 1.0000 100 chrXV:216318-216625 1.0000 100 chrVI:221836-221985 1.0000 100 chrXV:87781-88177 1.0000 100 chrII:592289-592685 1.0000 100 chrXVI:280662-281427 1.0000 100 chrXIII:272538-272934 1.0000 100 chrXVI:642353-642749 1.0000 100 chrIX:215992-216388 1.0000 100 chrXV:304760-305156 1.0000 100 chrIV:125222-125618 1.0000 100 chrIII:149768-150073 1.0000 100 chrVII:824448-824844 1.0000 100 chrXIV:442854-443269 1.0000 100 chrXIII:372352-372607 1.0000 100 chrXII:691222-691590 1.0000 100 chrXIII:354073-354469 1.0000 100 chrXI:140893-141252 1.0000 100 chrVII:824648-825044 1.0000 100 chrIV:645060-645375 1.0000 100 chrXVI:188580-188976 1.0000 100 chrIV:118351-118747 1.0000 100 chrXVI:821884-822115 1.0000 100 chrXIII:888471-888867 1.0000 100 chrXII:92400-92755 1.0000 100 chrXV:436380-436819 1.0000 100 chrXIII:626637-626839 1.0000 100 chrIV:1359455-1359757 1.0000 100 chrXIII:296882-298822 1.0000 100 chrVIII:554159-554260 1.0000 100 chrX:156299-156399 1.0000 100 chrX:453571-453671 1.0000 100 chrXII:1018319-1018715 1.0000 100 chrXII:369280-370286 1.0000 100 chrIV:541479-541833 1.0000 100 chrII:255105-255352 1.0000 100 chrXIV:102571-102992 1.0000 100 chrVIII:132949-133068 1.0000 100 chrVII:366128-366493 1.0000 100 chrXV:1028755-1029046 1.0000 100 chrII:642919-643240 1.0000 100 chrIV:619849-620188 1.0000 100 chrX:227773-227873 1.0000 100 chrX:121324-121424 1.0000 100 chrV:396866-397262 1.0000 100 chrVIII:115995-116344 1.0000 100 chrVIII:237735-238084 1.0000 100 chrX:90118-90218 1.0000 100 chrXIV:87329-87743 1.0000 100 chrXII:857030-857426 1.0000 100 chrVII:120955-121215 1.0000 100 chrVII:648069-648465 1.0000 100 chrXI:38684-39080 1.0000 100 chrXIII:552923-553135 1.0000 100 chrIV:221278-221674 1.0000 100 chrVII:148245-148641 1.0000 100 chrXIII:225422-225677 1.0000 100 chrXII:592418-592746 1.0000 100 chrXIV:494101-494497 1.0000 100 chrIV:308059-308309 1.0000 100 chrVII:311167-312110 1.0000 100 chrXVI:282519-282915 1.0000 100 chrXII:459546-460111 1.0000 100 chrXVI:303582-303890 1.0000 100 chrIV:601263-601659 1.0000 100 chrVII:1004077-1004385 1.0000 100 chrVIII:148233-148629 1.0000 100 chrVII:706966-707221 1.0000 100 chrXIV:104680-105027 1.0000 100 chrXVI:23214-23610 1.0000 100 chrVII:851078-851474 1.0000 100 chrI:72464-72975 1.0000 100 chrXII:952948-953058 1.0000 100 chrVII:438651-438874 1.0000 100 chrVII:544441-544821 1.0000 100 chrVI:180752-181206 1.0000 100 chrII:478959-479286 1.0000 100 chrXI:259273-259669 1.0000 100 chrXIV:721763-721868 1.0000 100 chrV:61220-62119 1.0000 100 chrV:397556-397952 1.0000 100 chrV:491126-491492 1.0000 100 chrVII:786951-787347 1.0000 100 chrXIII:626340-626505 1.0000 100 chrXI:558672-559068 1.0000 100 chrXV:377886-378229 1.0000 100 chrVII:556152-556548 1.0000 100 chrXV:621309-621705 1.0000 100 chrV:424885-425158 1.0000 100 chrXIII:123416-123812 1.0000 100 chrIII:90824-91062 1.0000 100 chrII:197335-197621 1.0000 100 chrV:85165-85448 1.0000 100 chrVII:876260-876594 1.0000 100 chrXVI:109973-110369 1.0000 100 chrXVI:731968-732236 1.0000 100 chrVII:845477-845870 1.0000 100 chrXII:809316-809591 1.0000 100 chrXIII:168660-169097 1.0000 100 chrXII:282820-283009 1.0000 100 chrXV:900225-900621 1.0000 100 chrX:73683-73783 1.0000 100 chrXV:288025-288377 1.0000 100 chrXIII:334880-335256 1.0000 100 chrIII:168211-168550 1.0000 100 chrVIII:125972-126261 1.0000 100 chrXV:92100-92496 1.0000 100 chrXV:79827-80074 1.0000 100 chrIII:138010-138406 1.0000 100 chrX:293773-293873 1.0000 100 chrV:386147-386486 1.0000 100 chrX:181918-182018 1.0000 100 chrVII:310567-310860 1.0000 100 chrX:651947-652047 1.0000 100 chrXV:779752-780933 1.0000 100 chrXI:364658-365054 1.0000 100 chrIX:248676-249052 1.0000 100 chrI:171654-172008 1.0000 100 chrIV:914957-915161 1.0000 100 chrI:143249-143434 1.0000 100 chrX:414820-414920 1.0000 100 chrII:45034-45327 1.0000 100 chrV:469308-469627 1.0000 100 chrXIII:51011-51235 1.0000 100 chrIV:1402993-1403268 1.0000 100 chrIV:130052-130323 1.0000 100 chrXII:198991-199695 1.0000 100 chrX:355200-355300 1.0000 100 chrXV:448898-449232 1.0000 100 chrXV:678911-679136 1.0000 100 chrX:523905-524005 1.0000 100 chrII:9459-9728 1.0000 100 chrVI:223317-223713 1.0000 100 chrXIII:463393-463753 1.0000 100 chrXIII:30271-30557 1.0000 100 chrXI:458445-458800 1.0000 100 chrXI:612639-613035 1.0000 100 chrI:72023-72478 1.0000 100 chrXIV:234278-234674 1.0000 100 chrVII:479332-480496 1.0000 100 chrIV:1175710-1176022 1.0000 100 chrV:102208-102604 1.0000 100 chrXI:141762-142158 1.0000 100 chrV:424087-424483 1.0000 100 chrIX:324169-324384 1.0000 100 chrV:79012-79408 1.0000 100 chrIV:44131-44527 1.0000 100 chrXV:253175-253410 1.0000 100 chrXIII:362921-363245 1.0000 100 chrXIII:252457-252853 1.0000 100 chrIII:295309-295757 1.0000 100 chrX:517713-517813 1.0000 100 chrVII:115338-115680 1.0000 100 chrXIII:123188-123584 1.0000 100 chrXIII:499654-499906 1.0000 100 chrXVI:282719-283115 1.0000 100 chrXII:789647-790043 1.0000 100 chrIV:332819-333215 1.0000 100 chrX:390947-391047 1.0000 100 chrIV:356583-356979 1.0000 100 chrII:606848-607244 1.0000 100 chrX:531668-531768 1.0000 100 chrXV:110292-110524 1.0000 100 chrXIII:352115-352461 1.0000 100 chrXI:46661-46961 1.0000 100 chrXIV:374723-375072 1.0000 100 chrXIII:550500-550896 1.0000 100 chrXV:340160-340524 1.0000 100 chrV:396260-396521 1.0000 100 chrVII:346089-346496 1.0000 100 chrIV:721872-722088 1.0000 100 chrXVI:878824-879220 1.0000 100 chrXIV:415298-415694 1.0000 100 chrX:538425-538525 1.0000 100 chrXI:143267-143583 1.0000 100 chrVII:882411-883069 1.0000 100 chrVII:533906-534302 1.0000 100 chrXI:105297-105693 1.0000 100 chrXIII:259042-259391 1.0000 100 chrVII:405413-405651 1.0000 100 chrXII:855944-856340 1.0000 100 chrXV:29099-29495 1.0000 100 chrII:165135-165400 1.0000 100 chrVII:823310-823688 1.0000 100 chrX:59029-59129 1.0000 100 chrXI:431979-432375 1.0000 100 chrXV:759087-759416 1.0000 100 chrXIII:504885-505115 1.0000 100 chrXV:977874-978270 1.0000 100 chrXIV:64175-64571 1.0000 100 chrV:288278-288670 1.0000 100 chrXII:534471-534844 1.0000 100 chrXV:622211-622607 1.0000 100 chrXV:594268-594567 1.0000 100 chrVII:440565-440987 1.0000 100 chrI:166138-166445 1.0000 100 chrXII:241694-241955 1.0000 100 chrXII:263708-263895 1.0000 100 chrIV:341371-341538 1.0000 100 chrIV:410220-410535 1.0000 100 chrIV:411328-411592 1.0000 100 chrII:645000-645350 1.0000 100 chrXVI:338762-339093 1.0000 100 chrI:142413-142853 1.0000 100 chrXV:796950-797317 1.0000 100 chrXII:300313-300749 1.0000 100 chrVI:157822-158162 1.0000 100 chrIV:359411-359795 1.0000 100 chrV:363591-363987 1.0000 100 chrIII:30498-30808 1.0000 100 chrVI:210495-210865 1.0000 100 chrXVI:701309-701471 1.0000 100 chrXII:781513-781809 1.0000 100 chrII:266219-266575 1.0000 100 chrXII:797025-797352 1.0000 100 chrXII:794224-795113 1.0000 100 chrIV:946134-946547 1.0000 100 chrXIV:661101-661497 1.0000 100 chrXII:947664-948060 1.0000 100 chrX:115850-115950 1.0000 100 chrIV:835855-836073 1.0000 100 chrV:51841-52237 1.0000 100 chrX:652267-652367 1.0000 100 chrXVI:406922-407318 1.0000 100 chrXIII:246212-246608 1.0000 100 chrXI:517823-518138 1.0000 100 chrVII:930852-931173 1.0000 100 chrIV:1256919-1257259 1.0000 100 chrXVI:751930-752246 1.0000 100 chrXII:402360-402756 1.0000 100 chrIX:174926-175235 1.0000 100 chrVII:828542-828963 1.0000 100 chrIV:842036-842417 1.0000 100 chrXIII:379227-379565 1.0000 100 chrIV:992704-992991 1.0000 100 chrX:374200-374300 1.0000 100 chrXII:1029054-1029450 1.0000 100 chrXVI:794967-795363 1.0000 100 chrXV:412126-412522 1.0000 100 chrII:169173-169569 1.0000 100 chrVII:316893-317289 1.0000 100 chrX:703312-703412 1.0000 100 chrXIII:288890-289286 1.0000 100 chrIV:1245647-1246043 1.0000 100 chrV:138505-139061 1.0000 100 chrXIII:159255-159651 1.0000 100 chrV:322670-322838 1.0000 100 chrXV:832425-832682 1.0000 100 chrXII:370410-370856 1.0000 100 chrVII:649011-649303 1.0000 100 chrIV:222027-222250 1.0000 100 chrX:606213-606313 1.0000 100 chrII:414038-414268 1.0000 100 chrXIV:499785-500795 1.0000 100 chrXV:1028016-1028504 1.0000 100 chrXIII:162352-162748 1.0000 100 chrVII:364154-364550 1.0000 100 chrVII:185598-185919 1.0000 100 chrIX:316194-316545 1.0000 100 chrXII:731980-732272 1.0000 100 chrIX:98276-98672 1.0000 100 chrXVI:860225-860561 1.0000 100 chrIV:1095234-1095616 1.0000 100 chrXVI:520286-520431 1.0000 100 chrXVI:769103-769478 1.0000 100 chrVI:101232-101565 1.0000 100 chrIV:628089-628485 1.0000 100 chrXIV:351933-352346 1.0000 100 chrVII:545295-545691 1.0000 100 chrVIII:54400-54632 1.0000 100 chrV:305828-306150 1.0000 100 chrV:68958-69456 1.0000 100 chrIII:138721-138917 1.0000 100 chrVIII:127283-127679 1.0000 100 chrXI:552104-552500 1.0000 100 chrX:422762-422862 1.0000 100 chrIV:915765-916011 1.0000 100 chrXIV:745792-746107 1.0000 100 chrIV:45561-45957 1.0000 100 chrVI:137340-137700 1.0000 100 chrV:483348-483744 1.0000 100 chrVII:287230-287615 1.0000 100 chrX:526476-526576 1.0000 100 chrV:434456-434767 1.0000 100 chrVII:561558-561753 1.0000 100 chrII:301222-301415 1.0000 100 chrXIII:288502-288898 1.0000 100 chrVII:794281-794585 1.0000 100 chrXII:796476-796800 1.0000 100 chrXIII:162993-163389 1.0000 100 chrVIII:400939-401452 1.0000 100 chrIV:1201597-1201944 1.0000 100 chrXII:211957-212353 1.0000 100 chrVII:730980-731323 1.0000 100 chrXII:636924-637166 1.0000 100 chrVII:609403-609977 1.0000 100 chrXI:261478-261712 1.0000 100 chrIV:322914-323348 1.0000 100 chrXIII:652365-652874 1.0000 100 chrXIII:279871-280267 1.0000 100 chrXII:875217-875594 1.0000 100 chrXII:710575-710971 1.0000 100 chrVI:89883-90279 1.0000 100 chrXIII:290641-290991 1.0000 100 chrIV:580034-580225 1.0000 100 chrV:492241-492600 1.0000 100 chrXII:406979-407350 1.0000 100 chrXV:571800-572151 1.0000 100 chrXIII:251826-252222 1.0000 100 chrVIII:475566-475901 1.0000 100 chrIV:355987-356135 1.0000 100 chrXIV:19370-19766 1.0000 100 chrIX:183337-183676 1.0000 100 chrVIII:127014-127410 1.0000 100 chrVII:534841-535168 1.0000 100 chrII:477079-477420 1.0000 100 chrII:36244-36564 1.0000 100 chrXII:712310-712706 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 561 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 56100 N= 561 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.300 C 0.200 G 0.200 T 0.300 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--MCM1/background): A 0.308 C 0.192 G 0.192 T 0.308 ******************************************************************************** ******************************************************************************** MOTIF VMCTWKTMATCDKRAGRTCMBSGGTTCGA MEME-1 width = 29 sites = 82 llr = 1502 E-value = 1.7e-291 ******************************************************************************** -------------------------------------------------------------------------------- Motif VMCTWKTMATCDKRAGRTCMBSGGTTCGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 33:131168::3146242:3::1::::2a pos.-specific C 346121331271:111:17544::::a:: probability G 422::5:1123354376::1368a:::8: matrix T 1128536::6:241:::63:3:::aa::: bits 2.4 * * 2.1 * * 1.9 * * 1.7 **** * Relative 1.4 * ****** Entropy 1.2 * ** * ******* (26.4 bits) 1.0 * * ** * ******** 0.7 ** * * *** * ******** 0.5 *** ***** * *************** 0.2 *********** ***************** 0.0 ----------------------------- Multilevel GCCTTGTAATCGGGAGGTCCCGGGTTCGA consensus CAG ATCC CGATAG AATAGC A sequence AG T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VMCTWKTMATCDKRAGRTCMBSGGTTCGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXVI:860225-860561 + 63 7.61e-12 GTAAAATCCA ACGTTGCCATCGTTGGGCCCCCGGTTCGA TTCCGGGCT chrIV:992704-992991 + 62 7.61e-12 GTAAAATCCA ACGTTGCCATCGTTGGGCCCCCGGTTCGA TTCCGGGCTT chrVII:930852-931173 - 6 7.61e-12 GTAAAATCCA ACGTTGCCATCGTTGGGCCCCCGGTTCGA TTCCG chrX:531668-531768 + 4 7.61e-12 CCA ACGTTGCCATCGTTGGGCCCCCGGTTCGA TTCCGGGCTT chrVII:845477-845870 + 53 7.61e-12 GTAAAATCCA ACGTTGCCATCGTTGGGCCCCCGGTTCGA TTCCGGGCTT chrVI:180752-181206 - 60 7.61e-12 GTAAAATCCA ACGTTGCCATCGTTGGGCCCCCGGTTCGA TTCCGGGCTT chrVI:162073-162395 + 71 7.61e-12 GTAAAATCCA ACGTTGCCATCGTTGGGCCCCCGGTTCGA T chrXV:226502-226837 - 7 7.61e-12 GTAAAATCCA ACGTTGCCATCGTTGGGCCCCCGGTTCGA TTCCGG chrIV:83403-83706 + 71 7.61e-12 GTAAAATCCA ACGTTGCCATCGTTGGGCCCCCGGTTCGA T chrVII:794281-794585 + 63 1.05e-11 TAGCGCGCTT CCCTTGCAAGGAAGAGGTCATCGGTTCGA TTCCGGTTG chrI:166138-166445 + 55 1.05e-11 TAGCGCGCTT CCCTTGCAAGGAAGAGGTCATCGGTTCGA TTCCGGTTGC chrIV:1201597-1201944 + 59 1.67e-11 TAGCGCGTAT GACTCTTAATCATAAGGTTAGGGGTTCGA GCCCCCTACA chrVII:185598-185919 - 21 1.67e-11 TAGCGCGTAT GACTCTTAATCATAAGGTTAGGGGTTCGA GCCCCCTACA chrX:414820-414920 + 69 1.67e-11 TAGCGCGTAT GACTCTTAATCATAAGGTTAGGGGTTCGA GCC chrVII:876260-876594 + 46 1.67e-11 TAGCGCGTAT GACTCTTAATCATAAGGTTAGGGGTTCGA GCCCCCTACA chrXIII:480508-480859 - 3 1.67e-11 TAGCGCGTAT GACTCTTAATCATAAGGTTAGGGGTTCGA GC chrIV:1352272-1352664 - 63 1.67e-11 AGCGCGTAT GACTCTTAATCATAAGGTTAGGGGTTCGA GCCCCCTACA chrVII:122128-122452 + 58 1.67e-11 TAGCGCGTAT GACTCTTAATCATAAGGTTAGGGGTTCGA GCCCCCTACA chrVII:828542-828963 - 36 4.06e-11 CAACGCGTCT GACTTCTAATCAGAAGATTATGGGTTCGA CCCCCATCGT chrVII:405413-405651 + 16 4.06e-11 CAACGCGTCT GACTTCTAATCAGAAGATTATGGGTTCGA CCCCCATCGT chrX:355200-355300 + 26 4.06e-11 CAACGCGTCT GACTTCTAATCAGAAGATTATGGGTTCGA CCCCCATCGT chrVII:736154-736560 + 61 4.06e-11 CAACGCGTCT GACTTCTAATCAGAAGATTATGGGTTCGA CCCCCATCGT chrIV:568731-569155 + 17 4.06e-11 CAACGCGTCT GACTTCTAATCAGAAGATTATGGGTTCGA CCCCCATCGT chrXI:162354-162694 - 28 4.06e-11 CAACGCGTCT GACTTCTAATCAGAAGATTATGGGTTCGA CCCCCATCGT chrII:405722-406154 + 18 4.06e-11 CAACGCGTCT GACTTCTAATCAGAAGATTATGGGTTCGA CCCCCATCGT chrIX:174926-175235 + 30 1.22e-10 TAAGGCGCCA CACTAGTAATGTGGAGATCATCGGTTCAA ATCCGATTGG chrII:266219-266575 + 60 1.22e-10 TAAGGCGCCA CACTAGTAATGTGGAGATCATCGGTTCAA ATCCGATTGG chrIII:295309-295757 + 30 1.22e-10 TAAGGCGCCA CACTAGTAATGTGGAGATCATCGGTTCAA ATCCGATTGG chrXIV:104680-105027 + 31 1.22e-10 TAAGGCGCCA CACTAGTAATGTGGAGATCATCGGTTCAA ATCCGATTGG chrVIII:115995-116344 - 3 1.22e-10 TAAGGCGCCA CACTAGTAATGTGGAGATCATCGGTTCAA AT chrXIII:290641-290991 + 63 2.32e-10 CTATCACATC ACGCTTTCACCGTGGAGACCGGGGTTCGA CTCCCCGTA chrXII:797025-797352 + 68 2.32e-10 CTATCACATC ACGCTTTCACCGTGGAGACCGGGGTTCGA CTCC chrII:645000-645350 + 70 2.32e-10 CTATCACATC ACGCTTTCACCGTGGAGACCGGGGTTCGA CT chrXI:140893-141252 - 11 2.32e-10 CTATCACATC ACGCTTTCACCGTGGAGACCGGGGTTCGA CTCCCCGTAT chrV:176942-177347 + 33 2.32e-10 CTATCACATC ACGCTTTCACCGTGGAGACCGGGGTTCGA CTCCCCGTAT chrIII:82364-82675 - 8 2.32e-10 CTATCACATC ACGCTTTCACCGTGGAGACCGGGGTTCGA CTCCCCG chrIII:123472-123799 - 7 3.37e-10 TATGATTCTC GCTTAGGGTGCGGGAGGTCCCGGGTTCGA GTCCCG chrXIV:631741-632066 - 8 3.37e-10 TATGATTCTC GCTTAGGGTGCGGGAGGTCCCGGGTTCGA GTCCCGG chrX:538425-538525 + 61 5.44e-10 TAACGCGTCT CCCTCCTAAGGAGAAGACTGCGGGTTCGA GTCCCGTACG chrIV:645060-645375 - 1 6.86e-10 TTATCACTTT CGGTTTTGATCCGGACAACCCCGGTTCGA chrIV:520820-521157 + 62 6.86e-10 TTATCACTTT CGGTTTTGATCCGGACAACCCCGGTTCGA ATCCGGGTAG chrXII:448527-448866 - 19 6.86e-10 TTATCACTTT CGGTTTTGATCCGGACAACCCCGGTTCGA ATCCGGGTAG chrXIV:374723-375072 + 69 8.63e-10 AAAAACTTCG GTCAAGTCATCTGGAGGTCCTGTGTTCGA TCC chrV:443112-443383 - 20 9.66e-10 TAAGGCACCG TGCTAATAACGCGGGGATCAGCGGTTCGA TCCCGCTAGA chrVII:738967-739314 + 62 9.66e-10 TAAGGCACCG TGCTAATAACGCGGGGATCAGCGGTTCGA TCCCGCTAGA chrXVI:819348-819766 + 52 9.66e-10 TAAGGCACCG TGCTAATAACGCGGGGATCAGCGGTTCGA TCCCGCTAGA chrXIV:96096-96492 - 12 1.21e-09 TTATCATCCC ACCCTTCCAAGGTGGGGACACGGGTTCGA TTCTCGTACC chrXV:110868-111164 - 11 1.21e-09 TTATCATCCC ACCCTTCCAAGGTGGGGACACGGGTTCGA TTCTCGTACC chrVII:440565-440987 - 5 9.96e-09 AAAAACTTCG GTCAAGTTATCTGGAGGTCCTGTGTTCGA TCCA chrVIII:237735-238084 - 4 9.96e-09 AAAAACTTCG GTCAAGTTATCTGGAGGTCCTGTGTTCGA TCC chrXVI:856747-857119 + 48 1.19e-08 TAGCGCGCTC CCTTAGCATGGGAGAGGTCTCCGGTTCGA TTCCGGACTC chrVIII:146133-146433 - 24 1.19e-08 TAGCGCGCTC CCTTAGCATGGGAGAGGTCTCCGGTTCGA TTCCGGACTC chrVIII:475566-475901 - 38 1.31e-08 TATCACGTTG CCTTCACACGGCAAAGGTCCCGAGTTCGA TCCTCGGTTG chrVII:823310-823688 + 63 1.31e-08 TATGGCATCT GCTTAACACGCAGAACGTCCCCAGTTCGA TCCTGGGCG chrV:469308-469627 + 70 1.31e-08 TATGGCATCT GCTTAACACGCAGAACGTCCCCAGTTCGA TC chrXIII:372352-372607 - 31 1.31e-08 TATGGCATCT GCTTAACACGCAGAACGTCCCCAGTTCGA TCCTGGGCGA chrXIII:420463-420820 - 12 1.31e-08 TATGGCATCT GCTTAACACGCAGAACGTCCCCAGTTCGA TCCTGGGCGA chrIV:1075347-1075703 - 12 1.31e-08 TATCACGTTG CCTTCACACGGCAAAGGTCCCGAGTTCGA TCCTCGGTTG chrIV:1175710-1176022 + 42 1.70e-08 AAGAGCGTCA GTCTCATAATCTGAAGGTCGAGAGTTCGA ACCTCCCCTG chrXV:340160-340524 - 22 2.20e-08 CACGGCGTCT GGCTACGAACCAGAAGATTCCAGGTTCAA GTCCTGGCGG chrIV:619849-620188 - 16 2.20e-08 CACGGCGTCT GGCTACGAACCAGAAGATTCCAGGTTCAA GTCCTGGCGG chrVII:1004077-1004385 + 63 2.39e-08 TAGAGCGTTG CACTTGTAATGCAAAGGTCGTTAGTTCAA TTCTGACAG chrXVI:744118-744487 + 60 2.39e-08 TAGAGCGTTG CACTTGTAATGCAAAGGTCGTTAGTTCAA TTCTGACAGG chrVII:730980-731323 + 66 3.07e-08 TAAGGCGTGC GACTGTTAATCGCAAGATCGTGAGTTCAA CCCTCA chrVI:137340-137700 - 31 3.07e-08 TAAGGCGTGC GACTGTTAATCGCAAGATCGTGAGTTCAA CCCTCACTGG chrXIV:102571-102992 + 15 3.07e-08 TAAGGCGTGC GACTGTTAATCGCAAGATCGTGAGTTCAA CCCTCACTGG chrXV:571800-572151 + 61 3.61e-08 TCAGAATGGG CGCTTGTCGCGTGCCAGATCGGGGTTCAA TTCCCCGTCG chrX:374200-374300 - 19 3.61e-08 TCAGAATGGG CGCTTGTCGCGTGCCAGATCGGGGTTCAA TTCCCCGTCG chrIV:946134-946547 + 67 3.61e-08 GTAATTTATC ACTACGAAATCTTGAGATCGGGCGTTCGA CTCGC chrVI:210495-210865 - 4 3.61e-08 GTAATTTACC ACTACGAAATCTTGAGATCGGGCGTTCGA CTC chrXIII:463393-463753 + 59 3.61e-08 TCAGAATGGG CGCTTGTCGCGTGCCAGATCGGGGTTCAA TTCCCCGTCG chrXIII:168660-169097 + 12 3.61e-08 GTAATTTATC ACTACGAAATCTTGAGATCGGGCGTTCGA CTCGCCCCCG chrVII:544441-544821 - 11 3.61e-08 TCAGAATGGG CGCTTGTCGCGTGCCAGATCGGGGTTCAA TTCCCCGTCG chrXII:793742-794224 + 13 3.61e-08 TCAGAATGGG CGCTTGTCGCGTGCCAGATCGGGGTTCAA TTCCCCGTCG chrXIII:168660-169087 + 17 3.61e-08 GTAATTTATC ACTACGAAATCTTGAGATCGGGCGTTCGA CTCGCCCCCG chrXI:513245-513547 - 1 3.61e-08 TCAGAATGGG CGCTTGTCGCGTGCCAGATCGGGGTTCAA chrIV:1095234-1095616 - 10 6.23e-08 AAAAACTTTG GTCAAGATATCTGGAGGTCCTGTGTTCGA TCCACAGAG chrX:517713-517813 - 10 6.23e-08 AAGCGCGCAG GGCTCATAACCCTGATGTCCTCGGATCGA AACCGAGCG chrVII:878570-878977 - 2 1.58e-07 CCACGGAATA AGATTGCAATCGAAGGGTTGCAGGTTCAA T chrXIII:362921-363245 + 59 1.69e-07 TTAGTACACA TCGTTGTGGCCGATGAAACCCTGGTTCGA TTCTAGGAGA chrVII:319730-319945 + 22 1.69e-07 TTAGTACACA TCGTTGTGGCCGATGAAACCCTGGTTCGA TTCTAGGAGA chrXV:594268-594567 - 2 3.03e-07 TTAGAATTTA TGCTTCCCAAGCATGAGGCCCGGGTTCGA T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VMCTWKTMATCDKRAGRTCMBSGGTTCGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:860225-860561 7.6e-12 62_[+1]_9 chrIV:992704-992991 7.6e-12 61_[+1]_10 chrVII:930852-931173 7.6e-12 5_[-1]_66 chrX:531668-531768 7.6e-12 3_[+1]_68 chrVII:845477-845870 7.6e-12 52_[+1]_19 chrVI:180752-181206 7.6e-12 59_[-1]_12 chrVI:162073-162395 7.6e-12 70_[+1]_1 chrXV:226502-226837 7.6e-12 6_[-1]_65 chrIV:83403-83706 7.6e-12 70_[+1]_1 chrVII:794281-794585 1e-11 62_[+1]_9 chrI:166138-166445 1e-11 54_[+1]_17 chrIV:1201597-1201944 1.7e-11 58_[+1]_13 chrVII:185598-185919 1.7e-11 20_[-1]_51 chrX:414820-414920 1.7e-11 68_[+1]_3 chrVII:876260-876594 1.7e-11 45_[+1]_26 chrXIII:480508-480859 1.7e-11 2_[-1]_69 chrIV:1352272-1352664 1.7e-11 62_[-1]_9 chrVII:122128-122452 1.7e-11 57_[+1]_14 chrVII:828542-828963 4.1e-11 35_[-1]_36 chrVII:405413-405651 4.1e-11 15_[+1]_56 chrX:355200-355300 4.1e-11 25_[+1]_46 chrVII:736154-736560 4.1e-11 60_[+1]_11 chrIV:568731-569155 4.1e-11 16_[+1]_55 chrXI:162354-162694 4.1e-11 27_[-1]_44 chrII:405722-406154 4.1e-11 17_[+1]_54 chrIX:174926-175235 1.2e-10 29_[+1]_42 chrII:266219-266575 1.2e-10 59_[+1]_12 chrIII:295309-295757 1.2e-10 29_[+1]_42 chrXIV:104680-105027 1.2e-10 30_[+1]_41 chrVIII:115995-116344 1.2e-10 2_[-1]_69 chrXIII:290641-290991 2.3e-10 62_[+1]_9 chrXII:797025-797352 2.3e-10 67_[+1]_4 chrII:645000-645350 2.3e-10 69_[+1]_2 chrXI:140893-141252 2.3e-10 10_[-1]_61 chrV:176942-177347 2.3e-10 32_[+1]_39 chrIII:82364-82675 2.3e-10 7_[-1]_64 chrIII:123472-123799 3.4e-10 6_[-1]_65 chrXIV:631741-632066 3.4e-10 7_[-1]_64 chrX:538425-538525 5.4e-10 60_[+1]_11 chrIV:645060-645375 6.9e-10 [-1]_71 chrIV:520820-521157 6.9e-10 61_[+1]_10 chrXII:448527-448866 6.9e-10 18_[-1]_53 chrXIV:374723-375072 8.6e-10 68_[+1]_3 chrV:443112-443383 9.7e-10 19_[-1]_52 chrVII:738967-739314 9.7e-10 61_[+1]_10 chrXVI:819348-819766 9.7e-10 51_[+1]_20 chrXIV:96096-96492 1.2e-09 11_[-1]_60 chrXV:110868-111164 1.2e-09 10_[-1]_61 chrVII:440565-440987 1e-08 4_[-1]_67 chrVIII:237735-238084 1e-08 3_[-1]_68 chrXVI:856747-857119 1.2e-08 47_[+1]_24 chrVIII:146133-146433 1.2e-08 23_[-1]_48 chrVIII:475566-475901 1.3e-08 37_[-1]_34 chrVII:823310-823688 1.3e-08 62_[+1]_9 chrV:469308-469627 1.3e-08 69_[+1]_2 chrXIII:372352-372607 1.3e-08 30_[-1]_41 chrXIII:420463-420820 1.3e-08 11_[-1]_60 chrIV:1075347-1075703 1.3e-08 11_[-1]_60 chrIV:1175710-1176022 1.7e-08 41_[+1]_30 chrXV:340160-340524 2.2e-08 21_[-1]_50 chrIV:619849-620188 2.2e-08 15_[-1]_56 chrVII:1004077-1004385 2.4e-08 62_[+1]_9 chrXVI:744118-744487 2.4e-08 59_[+1]_12 chrVII:730980-731323 3.1e-08 65_[+1]_6 chrVI:137340-137700 3.1e-08 30_[-1]_41 chrXIV:102571-102992 3.1e-08 14_[+1]_57 chrXV:571800-572151 3.6e-08 60_[+1]_11 chrX:374200-374300 3.6e-08 18_[-1]_53 chrIV:946134-946547 3.6e-08 66_[+1]_5 chrVI:210495-210865 3.6e-08 3_[-1]_68 chrXIII:463393-463753 3.6e-08 58_[+1]_13 chrXIII:168660-169097 3.6e-08 11_[+1]_60 chrVII:544441-544821 3.6e-08 10_[-1]_61 chrXII:793742-794224 3.6e-08 12_[+1]_59 chrXIII:168660-169087 3.6e-08 16_[+1]_55 chrXI:513245-513547 3.6e-08 [-1]_71 chrIV:1095234-1095616 6.2e-08 9_[-1]_62 chrX:517713-517813 6.2e-08 9_[-1]_62 chrVII:878570-878977 1.6e-07 1_[-1]_70 chrXIII:362921-363245 1.7e-07 58_[+1]_13 chrVII:319730-319945 1.7e-07 21_[+1]_50 chrXV:594268-594567 3e-07 1_[-1]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VMCTWKTMATCDKRAGRTCMBSGGTTCGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VMCTWKTMATCDKRAGRTCMBSGGTTCGA width=29 seqs=82 chrXVI:860225-860561 ( 63) ACGTTGCCATCGTTGGGCCCCCGGTTCGA 1 chrIV:992704-992991 ( 62) ACGTTGCCATCGTTGGGCCCCCGGTTCGA 1 chrVII:930852-931173 ( 6) ACGTTGCCATCGTTGGGCCCCCGGTTCGA 1 chrX:531668-531768 ( 4) ACGTTGCCATCGTTGGGCCCCCGGTTCGA 1 chrVII:845477-845870 ( 53) ACGTTGCCATCGTTGGGCCCCCGGTTCGA 1 chrVI:180752-181206 ( 60) ACGTTGCCATCGTTGGGCCCCCGGTTCGA 1 chrVI:162073-162395 ( 71) ACGTTGCCATCGTTGGGCCCCCGGTTCGA 1 chrXV:226502-226837 ( 7) ACGTTGCCATCGTTGGGCCCCCGGTTCGA 1 chrIV:83403-83706 ( 71) ACGTTGCCATCGTTGGGCCCCCGGTTCGA 1 chrVII:794281-794585 ( 63) CCCTTGCAAGGAAGAGGTCATCGGTTCGA 1 chrI:166138-166445 ( 55) CCCTTGCAAGGAAGAGGTCATCGGTTCGA 1 chrIV:1201597-1201944 ( 59) GACTCTTAATCATAAGGTTAGGGGTTCGA 1 chrVII:185598-185919 ( 21) GACTCTTAATCATAAGGTTAGGGGTTCGA 1 chrX:414820-414920 ( 69) GACTCTTAATCATAAGGTTAGGGGTTCGA 1 chrVII:876260-876594 ( 46) GACTCTTAATCATAAGGTTAGGGGTTCGA 1 chrXIII:480508-480859 ( 3) GACTCTTAATCATAAGGTTAGGGGTTCGA 1 chrIV:1352272-1352664 ( 63) GACTCTTAATCATAAGGTTAGGGGTTCGA 1 chrVII:122128-122452 ( 58) GACTCTTAATCATAAGGTTAGGGGTTCGA 1 chrVII:828542-828963 ( 36) GACTTCTAATCAGAAGATTATGGGTTCGA 1 chrVII:405413-405651 ( 16) GACTTCTAATCAGAAGATTATGGGTTCGA 1 chrX:355200-355300 ( 26) GACTTCTAATCAGAAGATTATGGGTTCGA 1 chrVII:736154-736560 ( 61) GACTTCTAATCAGAAGATTATGGGTTCGA 1 chrIV:568731-569155 ( 17) GACTTCTAATCAGAAGATTATGGGTTCGA 1 chrXI:162354-162694 ( 28) GACTTCTAATCAGAAGATTATGGGTTCGA 1 chrII:405722-406154 ( 18) GACTTCTAATCAGAAGATTATGGGTTCGA 1 chrIX:174926-175235 ( 30) CACTAGTAATGTGGAGATCATCGGTTCAA 1 chrII:266219-266575 ( 60) CACTAGTAATGTGGAGATCATCGGTTCAA 1 chrIII:295309-295757 ( 30) CACTAGTAATGTGGAGATCATCGGTTCAA 1 chrXIV:104680-105027 ( 31) CACTAGTAATGTGGAGATCATCGGTTCAA 1 chrVIII:115995-116344 ( 3) CACTAGTAATGTGGAGATCATCGGTTCAA 1 chrXIII:290641-290991 ( 63) ACGCTTTCACCGTGGAGACCGGGGTTCGA 1 chrXII:797025-797352 ( 68) ACGCTTTCACCGTGGAGACCGGGGTTCGA 1 chrII:645000-645350 ( 70) ACGCTTTCACCGTGGAGACCGGGGTTCGA 1 chrXI:140893-141252 ( 11) ACGCTTTCACCGTGGAGACCGGGGTTCGA 1 chrV:176942-177347 ( 33) ACGCTTTCACCGTGGAGACCGGGGTTCGA 1 chrIII:82364-82675 ( 8) ACGCTTTCACCGTGGAGACCGGGGTTCGA 1 chrIII:123472-123799 ( 7) GCTTAGGGTGCGGGAGGTCCCGGGTTCGA 1 chrXIV:631741-632066 ( 8) GCTTAGGGTGCGGGAGGTCCCGGGTTCGA 1 chrX:538425-538525 ( 61) CCCTCCTAAGGAGAAGACTGCGGGTTCGA 1 chrIV:645060-645375 ( 1) CGGTTTTGATCCGGACAACCCCGGTTCGA 1 chrIV:520820-521157 ( 62) CGGTTTTGATCCGGACAACCCCGGTTCGA 1 chrXII:448527-448866 ( 19) CGGTTTTGATCCGGACAACCCCGGTTCGA 1 chrXIV:374723-375072 ( 69) GTCAAGTCATCTGGAGGTCCTGTGTTCGA 1 chrV:443112-443383 ( 20) TGCTAATAACGCGGGGATCAGCGGTTCGA 1 chrVII:738967-739314 ( 62) TGCTAATAACGCGGGGATCAGCGGTTCGA 1 chrXVI:819348-819766 ( 52) TGCTAATAACGCGGGGATCAGCGGTTCGA 1 chrXIV:96096-96492 ( 12) ACCCTTCCAAGGTGGGGACACGGGTTCGA 1 chrXV:110868-111164 ( 11) ACCCTTCCAAGGTGGGGACACGGGTTCGA 1 chrVII:440565-440987 ( 5) GTCAAGTTATCTGGAGGTCCTGTGTTCGA 1 chrVIII:237735-238084 ( 4) GTCAAGTTATCTGGAGGTCCTGTGTTCGA 1 chrXVI:856747-857119 ( 48) CCTTAGCATGGGAGAGGTCTCCGGTTCGA 1 chrVIII:146133-146433 ( 24) CCTTAGCATGGGAGAGGTCTCCGGTTCGA 1 chrVIII:475566-475901 ( 38) CCTTCACACGGCAAAGGTCCCGAGTTCGA 1 chrVII:823310-823688 ( 63) GCTTAACACGCAGAACGTCCCCAGTTCGA 1 chrV:469308-469627 ( 70) GCTTAACACGCAGAACGTCCCCAGTTCGA 1 chrXIII:372352-372607 ( 31) GCTTAACACGCAGAACGTCCCCAGTTCGA 1 chrXIII:420463-420820 ( 12) GCTTAACACGCAGAACGTCCCCAGTTCGA 1 chrIV:1075347-1075703 ( 12) CCTTCACACGGCAAAGGTCCCGAGTTCGA 1 chrIV:1175710-1176022 ( 42) GTCTCATAATCTGAAGGTCGAGAGTTCGA 1 chrXV:340160-340524 ( 22) GGCTACGAACCAGAAGATTCCAGGTTCAA 1 chrIV:619849-620188 ( 16) GGCTACGAACCAGAAGATTCCAGGTTCAA 1 chrVII:1004077-1004385 ( 63) CACTTGTAATGCAAAGGTCGTTAGTTCAA 1 chrXVI:744118-744487 ( 60) CACTTGTAATGCAAAGGTCGTTAGTTCAA 1 chrVII:730980-731323 ( 66) GACTGTTAATCGCAAGATCGTGAGTTCAA 1 chrVI:137340-137700 ( 31) GACTGTTAATCGCAAGATCGTGAGTTCAA 1 chrXIV:102571-102992 ( 15) GACTGTTAATCGCAAGATCGTGAGTTCAA 1 chrXV:571800-572151 ( 61) CGCTTGTCGCGTGCCAGATCGGGGTTCAA 1 chrX:374200-374300 ( 19) CGCTTGTCGCGTGCCAGATCGGGGTTCAA 1 chrIV:946134-946547 ( 67) ACTACGAAATCTTGAGATCGGGCGTTCGA 1 chrVI:210495-210865 ( 4) ACTACGAAATCTTGAGATCGGGCGTTCGA 1 chrXIII:463393-463753 ( 59) CGCTTGTCGCGTGCCAGATCGGGGTTCAA 1 chrXIII:168660-169097 ( 12) ACTACGAAATCTTGAGATCGGGCGTTCGA 1 chrVII:544441-544821 ( 11) CGCTTGTCGCGTGCCAGATCGGGGTTCAA 1 chrXII:793742-794224 ( 13) CGCTTGTCGCGTGCCAGATCGGGGTTCAA 1 chrXIII:168660-169087 ( 17) ACTACGAAATCTTGAGATCGGGCGTTCGA 1 chrXI:513245-513547 ( 1) CGCTTGTCGCGTGCCAGATCGGGGTTCAA 1 chrIV:1095234-1095616 ( 10) GTCAAGATATCTGGAGGTCCTGTGTTCGA 1 chrX:517713-517813 ( 10) GGCTCATAACCCTGATGTCCTCGGATCGA 1 chrVII:878570-878977 ( 2) AGATTGCAATCGAAGGGTTGCAGGTTCAA 1 chrXIII:362921-363245 ( 59) TCGTTGTGGCCGATGAAACCCTGGTTCGA 1 chrVII:319730-319945 ( 22) TCGTTGTGGCCGATGAAACCCTGGTTCGA 1 chrXV:594268-594567 ( 2) TGCTTCCCAAGCATGAGGCCCGGGTTCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VMCTWKTMATCDKRAGRTCMBSGGTTCGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 40392 bayes= 10.4328 E= 1.7e-291 -20 55 98 -207 -7 119 11 -234 -465 158 35 -85 -166 -98 -1300 139 -20 2 -239 70 -120 -52 131 -27 -234 55 -198 98 90 67 -117 -307 134 -139 -98 -266 -307 35 -28 86 -1300 183 72 -1300 -14 -39 78 -34 -107 -239 127 20 25 -139 111 -107 104 -139 61 -1300 -75 -117 191 -465 25 -1300 172 -1300 -41 -65 -397 104 -1300 188 -1300 -7 4 142 -39 -366 -465 98 72 -7 -307 88 155 -266 -107 -198 198 -266 -1300 -1300 238 -1300 -465 -1300 -1300 168 -1300 -1300 -1300 170 -1300 238 -1300 -1300 -41 -1300 200 -1300 170 -1300 -1300 -1300 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VMCTWKTMATCDKRAGRTCMBSGGTTCGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 82 E= 1.7e-291 0.268293 0.280488 0.378049 0.073171 0.292683 0.439024 0.207317 0.060976 0.012195 0.573171 0.243902 0.170732 0.097561 0.097561 0.000000 0.804878 0.268293 0.195122 0.036585 0.500000 0.134146 0.134146 0.475610 0.256098 0.060976 0.280488 0.048780 0.609756 0.573171 0.304878 0.085366 0.036585 0.780488 0.073171 0.097561 0.048780 0.036585 0.243902 0.158537 0.560976 0.000000 0.682927 0.317073 0.000000 0.280488 0.146341 0.329268 0.243902 0.146341 0.036585 0.463415 0.353659 0.365854 0.073171 0.414634 0.146341 0.634146 0.073171 0.292683 0.000000 0.182927 0.085366 0.719512 0.012195 0.365854 0.000000 0.634146 0.000000 0.231707 0.121951 0.012195 0.634146 0.000000 0.707317 0.000000 0.292683 0.317073 0.512195 0.146341 0.024390 0.012195 0.378049 0.317073 0.292683 0.036585 0.353659 0.560976 0.048780 0.146341 0.048780 0.756098 0.048780 0.000000 0.000000 1.000000 0.000000 0.012195 0.000000 0.000000 0.987805 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.231707 0.000000 0.768293 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VMCTWKTMATCDKRAGRTCMBSGGTTCGA MEME-1 regular expression -------------------------------------------------------------------------------- [GCA][CAG][CG]T[TA][GT][TC][AC]A[TC][CG][GAT][GT][GA][AG]G[GA][TA][CT][CA][CGT][GC]GGTTC[GA]A -------------------------------------------------------------------------------- Time 309.39 secs. ******************************************************************************** ******************************************************************************** MOTIF BDTGGCBYAGTKGKWARRGSS MEME-2 width = 21 sites = 132 llr = 1820 E-value = 1.6e-300 ******************************************************************************** -------------------------------------------------------------------------------- Motif BDTGGCBYAGTKGKWARRGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 12:3:::1a2::::36452:: pos.-specific C 3::::744:::1::1:12153 probability G 34:7a:21:8:6a41143635 matrix T 34a::334::a3:55311122 bits 2.4 * * 2.1 * * 1.9 * * 1.7 * * * * Relative 1.4 *** *** * Entropy 1.2 **** *** * (19.9 bits) 1.0 **** *** * 0.7 ***** ****** ** 0.5 ****** ****** * *** 0.2 ********************* 0.0 --------------------- Multilevel CGTGGCCCAGTGGTTAAAGCG consensus TT A TTT A T GATGG GC sequence GA G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGCBYAGTKGKWARRGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIII:259042-259391 - 48 1.02e-10 AGTATGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrX:523905-524005 - 30 1.02e-10 TTAAAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrII:226929-227290 + 21 1.02e-10 AACGAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:980837-981174 - 75 1.02e-10 GGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXV:274494-274897 + 33 5.63e-10 ATCGTGTCCC AGTGGCCGAGTGGTTAAGGCG ATGCCCTGCT chrXII:784198-784559 + 31 5.63e-10 CAACCGTCCC AGTGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrIV:1150728-1151085 - 60 5.63e-10 TTTCAGTCCC AGTGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrV:288278-288670 - 75 8.72e-10 GGCAC TATGGCCGAGTGGTTAAGGCG ACAGACTTGA chrIX:248676-249052 + 41 8.72e-10 TTTTAGGCAC TATGGCCGAGTGGTTAAGGCG ACAGACTTGA chrVII:794281-794585 + 39 1.62e-09 ATTGCGGGCA CATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrI:166138-166445 + 31 1.62e-09 GAGTTGGGCA CATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrIX:183337-183676 - 32 1.98e-09 TTCCTGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXI:517823-518138 + 63 1.98e-09 ACTATGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrIV:410220-410535 + 57 1.98e-09 ATATTGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrII:197335-197621 + 71 1.98e-09 ATCAAGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTA chrXVI:856747-857119 + 24 1.98e-09 GATTCGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXII:734640-734965 + 55 1.98e-09 AGTTTGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrVIII:146133-146433 - 56 1.98e-09 TATCAGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrV:443112-443383 - 53 1.98e-09 AATTTGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXVI:880197-880535 - 28 1.98e-09 ATAATGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrVII:738967-739314 + 37 1.98e-09 AAATAGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXVI:819348-819766 + 27 1.98e-09 AGAATGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrV:492241-492600 - 29 2.41e-09 TCCTATTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrXV:340160-340524 - 54 2.41e-09 ATCTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrIV:619849-620188 - 48 2.41e-09 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrX:233765-233865 + 69 2.41e-09 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrXI:490800-491119 + 64 2.41e-09 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrXII:374186-374534 + 50 2.41e-09 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrXII:875217-875594 + 26 5.07e-09 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXVI:769103-769478 - 37 5.07e-09 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXII:731980-732272 + 19 5.07e-09 ACAATGGGAG TTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrIV:359411-359795 + 29 5.07e-09 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrVII:115338-115680 + 34 5.07e-09 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXII:592418-592746 - 62 5.07e-09 ACAATGGGAG TTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXI:578799-579183 + 29 5.07e-09 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrX:617758-617858 + 43 5.07e-09 ACAATGGGAG TTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrII:9459-9728 + 45 1.01e-08 TTCGTGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrX:424226-424326 - 80 1.01e-08 . GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXIV:726051-726360 - 37 1.01e-08 TCTTTGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXII:962885-963219 - 28 1.01e-08 TCGACGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrIX:174926-175235 + 6 1.19e-08 GCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrII:266219-266575 + 36 1.19e-08 AAACTGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrX:59029-59129 - 22 1.19e-08 TAGAAGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrIII:295309-295757 + 6 1.19e-08 GCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXIV:104680-105027 + 7 1.19e-08 AGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrVIII:115995-116344 - 35 1.19e-08 TTAGAGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrIV:1201597-1201944 + 35 2.24e-08 AAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:185598-185919 - 53 2.24e-08 AAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrX:414820-414920 + 45 2.24e-08 AATTAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:876260-876594 + 22 2.24e-08 GAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVI:226600-226922 - 24 2.24e-08 AAAATGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrXIII:480508-480859 - 35 2.24e-08 AAGTAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:122128-122452 + 34 2.24e-08 AATTAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:730980-731323 + 41 4.02e-08 AAAAAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrVI:137340-137700 - 64 4.02e-08 TGACTGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrIV:1095234-1095616 - 61 4.02e-08 TGTTAGCGGA CTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXIV:374723-375072 + 27 4.02e-08 AATAAGCGGA CTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXI:74445-74804 + 55 4.02e-08 AATTAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXV:228165-228508 + 50 4.02e-08 TATTAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrII:36244-36564 + 49 7.93e-08 TGTAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVI:157822-158162 - 40 7.93e-08 TAGAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVII:440565-440987 - 56 7.93e-08 TATATGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXIII:352115-352461 + 47 7.93e-08 TATAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:237735-238084 - 55 7.93e-08 AGTAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXVI:622423-622805 - 42 7.93e-08 GATATGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVII:823310-823688 + 38 2.35e-07 AGAGTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:469308-469627 + 45 2.35e-07 TAATTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:372352-372607 - 64 2.35e-07 AACCTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:308046-308380 - 29 2.35e-07 TAAGTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:438554-438857 + 50 2.35e-07 AATTAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:420463-420820 - 45 2.35e-07 TAACAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrX:378206-378306 + 50 2.35e-07 TAATAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXVI:860225-860561 + 41 3.62e-07 AACAAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrIV:992704-992991 + 40 3.62e-07 TGTGAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:930852-931173 - 36 3.62e-07 AGTAAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:845477-845870 + 31 3.62e-07 AACAAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVI:162073-162395 + 49 3.62e-07 AACAAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXV:226502-226837 - 37 3.62e-07 ATTCAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrIV:83403-83706 + 49 3.62e-07 ACTTAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrIII:142596-142937 - 30 3.62e-07 TACTAGCGCA AGTGGTTTAGTGGTAAAATCC AACGTTGCCA chrX:422762-422862 + 61 4.45e-07 TGTATGCTTC AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrVI:101232-101565 + 33 4.45e-07 AATTCGGGCG TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrX:390947-391047 - 23 4.45e-07 ATAGTGCTTC AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrIV:1175710-1176022 + 18 4.45e-07 ACAAAGCTTC AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrXII:92400-92755 + 26 4.45e-07 AATAAGGGCG TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXV:300946-301304 + 27 4.45e-07 AGATCGGGCG TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXIV:568033-568232 + 38 4.45e-07 TAATCGGGCG TGTGGTCTAGTGGTATGATTC TCGCTTTGGG chrIV:1256919-1257259 - 15 7.93e-07 TCTTAGCGAA AGTGGTTCAGTGGTTAGAATT CATGCTTCCC chrXV:594268-594567 - 33 7.93e-07 GAAACGCGCA AGTGGTTCAGTGGTTAGAATT TATGCTTCCC chrXVI:338762-339093 - 17 9.50e-07 TTAGCAGCGC CGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrX:517713-517813 - 41 9.50e-07 AGTTAAGCGC CGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrIII:149768-150073 + 55 9.50e-07 TGTTGAGCGC CGTGGCGCAGTGGAAGCGCGC AGGGCTCATA chrX:538425-538525 + 38 1.04e-06 AGTTGGTTCC GTTGGCGTAATGGTAACGCGT CTCCCTCCTA chrVII:1004077-1004385 + 40 1.04e-06 GGTTTGCCTC CTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrXVI:744118-744487 + 37 1.04e-06 TAAAAGCCTC CTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrVIII:466830-467138 + 61 1.04e-06 TTTTAGCCTC CTTAGCTTAGTGGTAGAGCGT TGCACTTGTA chrIV:946134-946547 + 27 1.34e-06 ATCGACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVI:210495-210865 - 52 1.34e-06 AACGACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrXV:288025-288377 + 46 1.34e-06 AGCTTCTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrX:354097-354197 + 34 1.34e-06 TATCACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVII:287230-287615 - 58 1.58e-06 AAGATGAAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrXIII:379227-379565 - 37 1.58e-06 AAGTTGAAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrVII:422917-423328 + 25 1.58e-06 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:878570-878977 - 67 1.58e-06 AAGATGAAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrXVI:56025-56444 - 65 1.58e-06 TAGTTGAAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrX:415866-415966 - 31 1.58e-06 AAGTTGAAGC GGTGGCTCAATGGTAGAGCTT TCGACTCCAA chrXI:46661-46961 - 20 2.32e-06 ACTCAGCCCT TTTGGCCAAGTGGTAAGGCAT CGCACTCGTA chrIV:768408-768804 - 46 2.68e-06 GCATGTTGTC TTTGGTGAAGTTGTTGACGGT TACGACATCG chrVII:828542-828963 - 67 2.88e-06 CAGTAGCTCG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrX:355200-355300 + 3 2.88e-06 CG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrII:642919-643240 - 24 2.88e-06 AGAAAGCTCG TATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrVII:736154-736560 + 38 2.88e-06 CAATAGCTCG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrXVI:435783-436137 - 29 2.88e-06 CAAAAGCTCG TATGGCGCAGTGGTAGCGCAG CAGATTGCAA chrXI:162354-162694 - 59 2.88e-06 TATTAGCTCG CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrXV:980557-980881 + 19 3.78e-06 TGTATGGGCG TGTGGTCTAGTGGAATGATTC TCGCTTTGGG chrXIV:96096-96492 - 43 4.30e-06 CACATGGGCG GTTAGTGTAGTGGTTATCATC CCACCCTTCC chrXV:110868-111164 - 42 4.30e-06 AACCCGGGCG GTTAGTGTAGTGGTTATCATC CCACCCTTCC chrXV:571800-572151 + 38 4.59e-06 TAAAATCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrX:374200-374300 - 50 4.59e-06 TTTCTTCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrXIII:463393-463753 + 36 4.59e-06 ATTTGTCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrVII:544441-544821 - 42 4.59e-06 TTTCTTCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrX:204564-204664 + 60 4.59e-06 AAAAATCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrXI:513245-513547 - 32 4.59e-06 AACGTTCCGT GATAGTTTAATGGTCAGAATG GGCGCTTGTC chrIV:568731-569155 + 76 4.59e-06 TTTCTTCCGT GATAGTTTAATGGTCAGAATG GGCG chrII:405722-406154 + 77 4.59e-06 TTTCTTCCGT GATAGTTTAATGGTCAGAATG GGC chrIII:168211-168550 - 17 5.85e-06 GTCCTGGTCC TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIV:645060-645375 - 32 5.85e-06 GTTACGGTCC TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIV:520820-521157 + 39 5.85e-06 TTTAGGGTCC TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrXII:448527-448866 - 50 5.85e-06 GTTCCGGTCC TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrV:130996-131306 - 27 5.85e-06 TAAGAGGTTT TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIII:123472-123799 - 38 7.78e-06 AAGGAGGGCG TGTGGTCTAGAGGTATGATTC TCGCTTAGGG chrXIV:631741-632066 - 39 7.78e-06 CTACCGGGCG TGTGGTCTAGAGGTATGATTC TCGCTTAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGCBYAGTKGKWARRGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:259042-259391 1e-10 47_[-2]_32 chrX:523905-524005 1e-10 29_[-2]_50 chrII:226929-227290 1e-10 20_[+2]_59 chrIV:980837-981174 1e-10 74_[-2]_5 chrXV:274494-274897 5.6e-10 32_[+2]_47 chrXII:784198-784559 5.6e-10 30_[+2]_49 chrIV:1150728-1151085 5.6e-10 59_[-2]_20 chrV:288278-288670 8.7e-10 74_[-2]_5 chrIX:248676-249052 8.7e-10 40_[+2]_39 chrVII:794281-794585 1.6e-09 38_[+2]_41 chrI:166138-166445 1.6e-09 30_[+2]_49 chrIX:183337-183676 2e-09 31_[-2]_48 chrXI:517823-518138 2e-09 62_[+2]_17 chrIV:410220-410535 2e-09 56_[+2]_23 chrII:197335-197621 2e-09 70_[+2]_9 chrXVI:856747-857119 2e-09 23_[+2]_56 chrXII:734640-734965 2e-09 54_[+2]_25 chrVIII:146133-146433 2e-09 55_[-2]_24 chrV:443112-443383 2e-09 52_[-2]_27 chrXVI:880197-880535 2e-09 27_[-2]_52 chrVII:738967-739314 2e-09 36_[+2]_43 chrXVI:819348-819766 2e-09 26_[+2]_53 chrV:492241-492600 2.4e-09 28_[-2]_51 chrXV:340160-340524 2.4e-09 53_[-2]_26 chrIV:619849-620188 2.4e-09 47_[-2]_32 chrX:233765-233865 2.4e-09 68_[+2]_11 chrXI:490800-491119 2.4e-09 63_[+2]_16 chrXII:374186-374534 2.4e-09 49_[+2]_30 chrXII:875217-875594 5.1e-09 25_[+2]_54 chrXVI:769103-769478 5.1e-09 36_[-2]_43 chrXII:731980-732272 5.1e-09 18_[+2]_61 chrIV:359411-359795 5.1e-09 28_[+2]_51 chrVII:115338-115680 5.1e-09 33_[+2]_46 chrXII:592418-592746 5.1e-09 61_[-2]_18 chrXI:578799-579183 5.1e-09 28_[+2]_51 chrX:617758-617858 5.1e-09 42_[+2]_37 chrII:9459-9728 1e-08 44_[+2]_35 chrX:424226-424326 1e-08 79_[-2] chrXIV:726051-726360 1e-08 36_[-2]_43 chrXII:962885-963219 1e-08 27_[-2]_52 chrIX:174926-175235 1.2e-08 5_[+2]_74 chrII:266219-266575 1.2e-08 35_[+2]_44 chrX:59029-59129 1.2e-08 21_[-2]_58 chrIII:295309-295757 1.2e-08 5_[+2]_74 chrXIV:104680-105027 1.2e-08 6_[+2]_73 chrVIII:115995-116344 1.2e-08 34_[-2]_45 chrIV:1201597-1201944 2.2e-08 34_[+2]_45 chrVII:185598-185919 2.2e-08 52_[-2]_27 chrX:414820-414920 2.2e-08 44_[+2]_35 chrVII:876260-876594 2.2e-08 21_[+2]_58 chrVI:226600-226922 2.2e-08 23_[-2]_56 chrXIII:480508-480859 2.2e-08 34_[-2]_45 chrVII:122128-122452 2.2e-08 33_[+2]_46 chrVII:730980-731323 4e-08 40_[+2]_39 chrVI:137340-137700 4e-08 63_[-2]_16 chrIV:1095234-1095616 4e-08 60_[-2]_19 chrXIV:374723-375072 4e-08 26_[+2]_53 chrXI:74445-74804 4e-08 54_[+2]_25 chrXV:228165-228508 4e-08 49_[+2]_30 chrII:36244-36564 7.9e-08 48_[+2]_31 chrVI:157822-158162 7.9e-08 39_[-2]_40 chrVII:440565-440987 7.9e-08 55_[-2]_24 chrXIII:352115-352461 7.9e-08 46_[+2]_33 chrVIII:237735-238084 7.9e-08 54_[-2]_25 chrXVI:622423-622805 7.9e-08 41_[-2]_38 chrVII:823310-823688 2.4e-07 37_[+2]_42 chrV:469308-469627 2.4e-07 44_[+2]_35 chrXIII:372352-372607 2.4e-07 63_[-2]_16 chrXI:308046-308380 2.4e-07 28_[-2]_51 chrV:438554-438857 2.4e-07 49_[+2]_30 chrXIII:420463-420820 2.4e-07 44_[-2]_35 chrX:378206-378306 2.4e-07 49_[+2]_30 chrXVI:860225-860561 3.6e-07 40_[+2]_39 chrIV:992704-992991 3.6e-07 39_[+2]_40 chrVII:930852-931173 3.6e-07 35_[-2]_44 chrVII:845477-845870 3.6e-07 30_[+2]_49 chrVI:162073-162395 3.6e-07 48_[+2]_31 chrXV:226502-226837 3.6e-07 36_[-2]_43 chrIV:83403-83706 3.6e-07 48_[+2]_31 chrIII:142596-142937 3.6e-07 29_[-2]_50 chrX:422762-422862 4.5e-07 60_[+2]_19 chrVI:101232-101565 4.5e-07 32_[+2]_47 chrX:390947-391047 4.5e-07 22_[-2]_57 chrIV:1175710-1176022 4.5e-07 17_[+2]_62 chrXII:92400-92755 4.5e-07 25_[+2]_54 chrXV:300946-301304 4.5e-07 26_[+2]_53 chrXIV:568033-568232 4.5e-07 37_[+2]_42 chrIV:1256919-1257259 7.9e-07 14_[-2]_65 chrXV:594268-594567 7.9e-07 32_[-2]_47 chrXVI:338762-339093 9.5e-07 16_[-2]_63 chrX:517713-517813 9.5e-07 40_[-2]_39 chrIII:149768-150073 9.5e-07 54_[+2]_25 chrX:538425-538525 1e-06 37_[+2]_42 chrVII:1004077-1004385 1e-06 39_[+2]_40 chrXVI:744118-744487 1e-06 36_[+2]_43 chrVIII:466830-467138 1e-06 60_[+2]_19 chrIV:946134-946547 1.3e-06 26_[+2]_53 chrVI:210495-210865 1.3e-06 51_[-2]_28 chrXV:288025-288377 1.3e-06 45_[+2]_34 chrX:354097-354197 1.3e-06 33_[+2]_46 chrVII:287230-287615 1.6e-06 57_[-2]_22 chrXIII:379227-379565 1.6e-06 36_[-2]_43 chrVII:422917-423328 1.6e-06 24_[+2]_55 chrVII:878570-878977 1.6e-06 66_[-2]_13 chrXVI:56025-56444 1.6e-06 64_[-2]_15 chrX:415866-415966 1.6e-06 30_[-2]_49 chrXI:46661-46961 2.3e-06 19_[-2]_60 chrIV:768408-768804 2.7e-06 45_[-2]_34 chrVII:828542-828963 2.9e-06 66_[-2]_13 chrX:355200-355300 2.9e-06 2_[+2]_77 chrII:642919-643240 2.9e-06 23_[-2]_56 chrVII:736154-736560 2.9e-06 37_[+2]_42 chrXVI:435783-436137 2.9e-06 28_[-2]_51 chrXI:162354-162694 2.9e-06 58_[-2]_21 chrXV:980557-980881 3.8e-06 18_[+2]_61 chrXIV:96096-96492 4.3e-06 42_[-2]_37 chrXV:110868-111164 4.3e-06 41_[-2]_38 chrXV:571800-572151 4.6e-06 37_[+2]_42 chrX:374200-374300 4.6e-06 49_[-2]_30 chrXIII:463393-463753 4.6e-06 35_[+2]_44 chrVII:544441-544821 4.6e-06 41_[-2]_38 chrX:204564-204664 4.6e-06 59_[+2]_20 chrXI:513245-513547 4.6e-06 31_[-2]_48 chrIV:568731-569155 4.6e-06 75_[+2]_4 chrII:405722-406154 4.6e-06 76_[+2]_3 chrIII:168211-168550 5.9e-06 16_[-2]_63 chrIV:645060-645375 5.9e-06 31_[-2]_48 chrIV:520820-521157 5.9e-06 38_[+2]_41 chrXII:448527-448866 5.9e-06 49_[-2]_30 chrV:130996-131306 5.9e-06 26_[-2]_53 chrIII:123472-123799 7.8e-06 37_[-2]_42 chrXIV:631741-632066 7.8e-06 38_[-2]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGCBYAGTKGKWARRGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BDTGGCBYAGTKGKWARRGSS width=21 seqs=132 chrXIII:259042-259391 ( 48) CTTGGCCGAGTGGTTAAGGCG 1 chrX:523905-524005 ( 30) CTTGGCCGAGTGGTTAAGGCG 1 chrII:226929-227290 ( 21) CTTGGCCGAGTGGTTAAGGCG 1 chrIV:980837-981174 ( 75) CTTGGCCGAGTGGTTAAGGCG 1 chrXV:274494-274897 ( 33) AGTGGCCGAGTGGTTAAGGCG 1 chrXII:784198-784559 ( 31) AGTGGCCGAGTGGTTAAGGCG 1 chrIV:1150728-1151085 ( 60) AGTGGCCGAGTGGTTAAGGCG 1 chrV:288278-288670 ( 75) TATGGCCGAGTGGTTAAGGCG 1 chrIX:248676-249052 ( 41) TATGGCCGAGTGGTTAAGGCG 1 chrVII:794281-794585 ( 39) CATGGCGCAGTTGGTAGCGCG 1 chrI:166138-166445 ( 31) CATGGCGCAGTTGGTAGCGCG 1 chrIX:183337-183676 ( 32) CTTGGCCCAGTTGGTTAAGGC 1 chrXI:517823-518138 ( 63) TGTGGCGTAGTCGGTAGCGCG 1 chrIV:410220-410535 ( 57) TGTGGCGTAGTCGGTAGCGCG 1 chrII:197335-197621 ( 71) CTTGGCCCAGTTGGTTAAGGC 1 chrXVI:856747-857119 ( 24) TGTGGCGTAGTCGGTAGCGCG 1 chrXII:734640-734965 ( 55) CTTGGCCCAGTTGGTTAAGGC 1 chrVIII:146133-146433 ( 56) TGTGGCGTAGTCGGTAGCGCG 1 chrV:443112-443383 ( 53) CTTGGCCCAGTTGGTTAAGGC 1 chrXVI:880197-880535 ( 28) CTTGGCCCAGTTGGTTAAGGC 1 chrVII:738967-739314 ( 37) CTTGGCCCAGTTGGTTAAGGC 1 chrXVI:819348-819766 ( 27) CTTGGCCCAGTTGGTTAAGGC 1 chrV:492241-492600 ( 29) CGTGGCCCAATGGTCACGGCG 1 chrXV:340160-340524 ( 54) CGTGGCCCAATGGTCACGGCG 1 chrIV:619849-620188 ( 48) CGTGGCCCAATGGTCACGGCG 1 chrX:233765-233865 ( 69) CGTGGCCCAATGGTCACGGCG 1 chrXI:490800-491119 ( 64) CGTGGCCCAATGGTCACGGCG 1 chrXII:374186-374534 ( 50) CGTGGCCCAATGGTCACGGCG 1 chrXII:875217-875594 ( 26) GTTAGCTCAGTTGGTAGAGCG 1 chrXVI:769103-769478 ( 37) GTTAGCTCAGTTGGTAGAGCG 1 chrXII:731980-732272 ( 19) TTTGGCCGAGTGGTTTAAGGC 1 chrIV:359411-359795 ( 29) GTTAGCTCAGTTGGTAGAGCG 1 chrVII:115338-115680 ( 34) GTTAGCTCAGTTGGTAGAGCG 1 chrXII:592418-592746 ( 62) TTTGGCCGAGTGGTTTAAGGC 1 chrXI:578799-579183 ( 29) GTTAGCTCAGTTGGTAGAGCG 1 chrX:617758-617858 ( 43) TTTGGCCGAGTGGTTTAAGGC 1 chrII:9459-9728 ( 45) GTTGGCCGAGTGGTCTAAGGC 1 chrX:424226-424326 ( 80) GTTGGCCGAGTGGTCTAAGGC 1 chrXIV:726051-726360 ( 37) GTTGGCCGAGTGGTCTAAGGC 1 chrXII:962885-963219 ( 28) GTTGGCCGAGTGGTCTAAGGC 1 chrIX:174926-175235 ( 6) TATGGCCAAGTTGGTAAGGCG 1 chrII:266219-266575 ( 36) TATGGCCAAGTTGGTAAGGCG 1 chrX:59029-59129 ( 22) TATGGCCAAGTTGGTAAGGCG 1 chrIII:295309-295757 ( 6) TATGGCCAAGTTGGTAAGGCG 1 chrXIV:104680-105027 ( 7) TATGGCCAAGTTGGTAAGGCG 1 chrVIII:115995-116344 ( 35) TATGGCCAAGTTGGTAAGGCG 1 chrIV:1201597-1201944 ( 35) GTTGGCGCAATCGGTAGCGCG 1 chrVII:185598-185919 ( 53) GTTGGCGCAATCGGTAGCGCG 1 chrX:414820-414920 ( 45) GTTGGCGCAATCGGTAGCGCG 1 chrVII:876260-876594 ( 22) GTTGGCGCAATCGGTAGCGCG 1 chrVI:226600-226922 ( 24) GTTGGCGCAATCGGTAGCGCG 1 chrXIII:480508-480859 ( 35) GTTGGCGCAATCGGTAGCGCG 1 chrVII:122128-122452 ( 34) GTTGGCGCAATCGGTAGCGCG 1 chrVII:730980-731323 ( 41) CATGGCCAAGTTGGTTAAGGC 1 chrVI:137340-137700 ( 64) CATGGCCAAGTTGGTTAAGGC 1 chrIV:1095234-1095616 ( 61) CTTAGCTCAGTTGGGAGAGCG 1 chrXIV:374723-375072 ( 27) CTTAGCTCAGTTGGGAGAGCG 1 chrXI:74445-74804 ( 55) CATGGCCAAGTTGGTTAAGGC 1 chrXV:228165-228508 ( 50) CATGGCCAAGTTGGTTAAGGC 1 chrII:36244-36564 ( 49) TTTAGCTCAGTTGGGAGAGCG 1 chrVI:157822-158162 ( 40) TTTAGCTCAGTTGGGAGAGCG 1 chrVII:440565-440987 ( 56) TTTAGCTCAGTTGGGAGAGCG 1 chrXIII:352115-352461 ( 47) TTTAGCTCAGTTGGGAGAGCG 1 chrVIII:237735-238084 ( 55) TTTAGCTCAGTTGGGAGAGCG 1 chrXVI:622423-622805 ( 42) TTTAGCTCAGTTGGGAGAGCG 1 chrVII:823310-823688 ( 38) CGTGGTCTAGTCGGTTATGGC 1 chrV:469308-469627 ( 45) CGTGGTCTAGTCGGTTATGGC 1 chrXIII:372352-372607 ( 64) CGTGGTCTAGTCGGTTATGGC 1 chrXI:308046-308380 ( 29) CGTGGTCTAGTCGGTTATGGC 1 chrV:438554-438857 ( 50) CGTGGTCTAGTCGGTTATGGC 1 chrXIII:420463-420820 ( 45) CGTGGTCTAGTCGGTTATGGC 1 chrX:378206-378306 ( 50) CGTGGTCTAGTCGGTTATGGC 1 chrXVI:860225-860561 ( 41) AGTGGTTTAGTGGTAAAATCC 1 chrIV:992704-992991 ( 40) AGTGGTTTAGTGGTAAAATCC 1 chrVII:930852-931173 ( 36) AGTGGTTTAGTGGTAAAATCC 1 chrVII:845477-845870 ( 31) AGTGGTTTAGTGGTAAAATCC 1 chrVI:162073-162395 ( 49) AGTGGTTTAGTGGTAAAATCC 1 chrXV:226502-226837 ( 37) AGTGGTTTAGTGGTAAAATCC 1 chrIV:83403-83706 ( 49) AGTGGTTTAGTGGTAAAATCC 1 chrIII:142596-142937 ( 30) AGTGGTTTAGTGGTAAAATCC 1 chrX:422762-422862 ( 61) AGTAGCTCAGTAGGAAGAGCG 1 chrVI:101232-101565 ( 33) TGTGGTCTAGTGGTATGATTC 1 chrX:390947-391047 ( 23) AGTAGCTCAGTAGGAAGAGCG 1 chrIV:1175710-1176022 ( 18) AGTAGCTCAGTAGGAAGAGCG 1 chrXII:92400-92755 ( 26) TGTGGTCTAGTGGTATGATTC 1 chrXV:300946-301304 ( 27) TGTGGTCTAGTGGTATGATTC 1 chrXIV:568033-568232 ( 38) TGTGGTCTAGTGGTATGATTC 1 chrIV:1256919-1257259 ( 15) AGTGGTTCAGTGGTTAGAATT 1 chrXV:594268-594567 ( 33) AGTGGTTCAGTGGTTAGAATT 1 chrXVI:338762-339093 ( 17) CGTGGCGCAGTGGAAGCGCGC 1 chrX:517713-517813 ( 41) CGTGGCGCAGTGGAAGCGCGC 1 chrIII:149768-150073 ( 55) CGTGGCGCAGTGGAAGCGCGC 1 chrX:538425-538525 ( 38) GTTGGCGTAATGGTAACGCGT 1 chrVII:1004077-1004385 ( 40) CTTAGCTTAGTGGTAGAGCGT 1 chrXVI:744118-744487 ( 37) CTTAGCTTAGTGGTAGAGCGT 1 chrVIII:466830-467138 ( 61) CTTAGCTTAGTGGTAGAGCGT 1 chrIV:946134-946547 ( 27) GGTAGCCAAGTTGGTTTAAGG 1 chrVI:210495-210865 ( 52) GGTAGCCAAGTTGGTTTAAGG 1 chrXV:288025-288377 ( 46) GGTAGCCAAGTTGGTTTAAGG 1 chrX:354097-354197 ( 34) GGTAGCCAAGTTGGTTTAAGG 1 chrVII:287230-287615 ( 58) GGTGGCTCAATGGTAGAGCTT 1 chrXIII:379227-379565 ( 37) GGTGGCTCAATGGTAGAGCTT 1 chrVII:422917-423328 ( 25) TTTGGCCGAGCGGTCTAAGGC 1 chrVII:878570-878977 ( 67) GGTGGCTCAATGGTAGAGCTT 1 chrXVI:56025-56444 ( 65) GGTGGCTCAATGGTAGAGCTT 1 chrX:415866-415966 ( 31) GGTGGCTCAATGGTAGAGCTT 1 chrXI:46661-46961 ( 20) TTTGGCCAAGTGGTAAGGCAT 1 chrIV:768408-768804 ( 46) TTTGGTGAAGTTGTTGACGGT 1 chrVII:828542-828963 ( 67) CGTGGCGTAATGGCAACGCGT 1 chrX:355200-355300 ( 3) CGTGGCGTAATGGCAACGCGT 1 chrII:642919-643240 ( 24) TATGGCGCAGTGGTAGCGCAG 1 chrVII:736154-736560 ( 38) CGTGGCGTAATGGCAACGCGT 1 chrXVI:435783-436137 ( 29) TATGGCGCAGTGGTAGCGCAG 1 chrXI:162354-162694 ( 59) CGTGGCGTAATGGCAACGCGT 1 chrXV:980557-980881 ( 19) TGTGGTCTAGTGGAATGATTC 1 chrXIV:96096-96492 ( 43) GTTAGTGTAGTGGTTATCATC 1 chrXV:110868-111164 ( 42) GTTAGTGTAGTGGTTATCATC 1 chrXV:571800-572151 ( 38) GATAGTTTAATGGTCAGAATG 1 chrX:374200-374300 ( 50) GATAGTTTAATGGTCAGAATG 1 chrXIII:463393-463753 ( 36) GATAGTTTAATGGTCAGAATG 1 chrVII:544441-544821 ( 42) GATAGTTTAATGGTCAGAATG 1 chrX:204564-204664 ( 60) GATAGTTTAATGGTCAGAATG 1 chrXI:513245-513547 ( 32) GATAGTTTAATGGTCAGAATG 1 chrIV:568731-569155 ( 76) GATAGTTTAATGGTCAGAATG 1 chrII:405722-406154 ( 77) GATAGTTTAATGGTCAGAATG 1 chrIII:168211-168550 ( 17) TATAGTGTAGTGGTTATCACT 1 chrIV:645060-645375 ( 32) TATAGTGTAGTGGTTATCACT 1 chrIV:520820-521157 ( 39) TATAGTGTAGTGGTTATCACT 1 chrXII:448527-448866 ( 50) TATAGTGTAGTGGTTATCACT 1 chrV:130996-131306 ( 27) TATAGTGTAGTGGTTATCACT 1 chrIII:123472-123799 ( 38) TGTGGTCTAGAGGTATGATTC 1 chrXIV:631741-632066 ( 39) TGTGGTCTAGAGGTATGATTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGCBYAGTKGKWARRGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 44880 bayes= 9.1733 E= 1.6e-300 -135 73 51 -10 -49 -1369 114 21 -1369 -1369 -1369 170 -10 -1369 189 -1369 -1369 -1369 238 -1369 -1369 186 -1369 -2 -1369 122 29 5 -135 98 -58 27 170 -1369 -1369 -1369 -39 -1369 200 -1369 -434 -466 -1369 167 -376 -49 155 -14 -1369 -1369 238 -1369 -334 -266 117 72 -14 -41 -166 74 99 -1369 -86 -14 51 -66 89 -189 65 -27 66 -254 -95 -41 160 -144 -376 131 73 -76 -1369 86 134 -89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGCBYAGTKGKWARRGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 132 E= 1.6e-300 0.121212 0.318182 0.272727 0.287879 0.219697 0.000000 0.424242 0.356061 0.000000 0.000000 0.000000 1.000000 0.287879 0.000000 0.712121 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.696970 0.000000 0.303030 0.000000 0.446970 0.234848 0.318182 0.121212 0.378788 0.128788 0.371212 1.000000 0.000000 0.000000 0.000000 0.234848 0.000000 0.765152 0.000000 0.015152 0.007576 0.000000 0.977273 0.022727 0.136364 0.560606 0.280303 0.000000 0.000000 1.000000 0.000000 0.030303 0.030303 0.431818 0.507576 0.280303 0.143939 0.060606 0.515152 0.613636 0.000000 0.106061 0.280303 0.439394 0.121212 0.356061 0.083333 0.484848 0.159091 0.303030 0.053030 0.159091 0.143939 0.583333 0.113636 0.022727 0.477273 0.318182 0.181818 0.000000 0.348485 0.484848 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BDTGGCBYAGTKGKWARRGSS MEME-2 regular expression -------------------------------------------------------------------------------- [CTG][GTA]T[GA]G[CT][CTG][CT]A[GA]T[GT]G[TG][TA][AT][AG][AG]G[CG][GC] -------------------------------------------------------------------------------- Time 586.85 secs. ******************************************************************************** ******************************************************************************** MOTIF RATGTAYGGRTGYW MEME-3 width = 14 sites = 62 llr = 717 E-value = 1.7e-053 ******************************************************************************** -------------------------------------------------------------------------------- Motif RATGTAYGGRTGYW MEME-3 Description -------------------------------------------------------------------------------- Simplified A 47:::811:5:::5 pos.-specific C ::::3:5:::::4: probability G 532a:2:9a5:911 matrix T 1:8:7:4:::a154 bits 2.4 * 2.1 * * 1.9 * ** 1.7 * ** * Relative 1.4 * ** ** Entropy 1.2 ** ** ** (16.7 bits) 1.0 ***** ** ** 0.7 ************ 0.5 ************** 0.2 ************** 0.0 -------------- Multilevel GATGTACGGATGTA consensus AG C T G CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RATGTAYGGRTGYW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------- chrXII:932132-932449 + 27 2.54e-08 CAGATGTACA GATGTACGGATGTA CGGATGTATA chrVIII:125972-126261 - 35 3.20e-08 TAAAGATGTA GGTGTACGGATGCA TTAACGTCTT chrIV:1359455-1359757 - 39 6.44e-08 ATGGGTGCGT GATGTACGGATGTT TAATGTCTTT chrV:68958-69456 + 23 7.99e-08 GAAGCTTTGT GGGGTACGGGTGCA TGCTCGGCTT chrII:45034-45327 - 39 7.99e-08 ACATACATAG AATGTACGGATGCA TGATTGTCTC chrXV:1028755-1029046 + 57 7.99e-08 AAACAAATCA AATGTACGGATGCA CAATGGTAAA chrIV:222027-222250 + 47 1.10e-07 ATGAGATAAG GGTGTACGGGTGTG GTAACCGTCG chrXIII:225422-225677 - 45 1.43e-07 TAAAAAATAG AATGTACGGATGTA ATGCACGGAT chrIX:68304-68453 - 21 1.43e-07 ACATCTTAGT AATGTACGGATGTA ATAAACTCAA chrX:703312-703412 + 53 1.87e-07 ATAAATAGTG GATGCATGGGTGCT TCCACGCGTC chrVII:534841-535168 + 50 2.22e-07 GGGTTACACA AATGCACGGATGCA AATATAAAAT chrXII:781513-781809 + 45 2.22e-07 GGTTTATGAA AATGCACGGATGCA TTTTCTCTAG chrXII:796476-796800 + 46 2.67e-07 TATTATCCAG GAGGCACGGATGCA AAAGATAGAA chrV:396260-396521 - 38 2.67e-07 GGTTCACAAA AGTGTACGGATGTA TACAACAGGG chrXVI:378715-378896 + 85 2.67e-07 TGAGAACTCG AATGTACGGATGTT TT chrXI:108847-109013 - 40 2.67e-07 GAGCCAACTA AATGTACGGATGTT GTAATGTGTT chrVII:149173-149476 + 44 3.04e-07 TGTATGGGTG GGTGTATGGATGCT GTAAGCACAG chrXIII:551405-551747 + 2 4.47e-07 A AATGTATGGGTGCG TAATGTACAG chrII:477079-477420 - 34 6.22e-07 TGGGTGTATA AATGTGTGGGTGCA ACATGAATGT chrIV:341371-341538 + 39 7.00e-07 TGGGTGTTAA AATGTACGGATGGA AAAGTAGACT chrXVI:731968-732236 - 51 7.00e-07 AACCATCCTA AAGGTATGGGTGTA CTGACGATGC chrXVI:829093-829395 + 27 7.00e-07 TTGACCGGAT GATGTAAGGATGCA TGTCCCTACT chrVII:254187-254526 + 41 7.66e-07 CATCTTTCAA TATGCACGGGTGCA ACCTCAAATA chrV:305828-306150 - 45 8.56e-07 TGGGCTTGTA AATGTGTGGGTGTA CAGTCCCGAT chrXV:79827-80074 + 48 8.56e-07 ACTTATTTAA TATGTACGGGTGTT TACATGGAGT chrIV:1300998-1301250 - 34 8.56e-07 AAACATCCAC AGTGCACGGATGTT TGAAGGAAAA chrXII:241694-241955 - 32 9.53e-07 TTACATTTTA TATGTACGGATGTA AAAAGGGAAA chrXV:678911-679136 + 37 9.53e-07 GGGTCCACAA TATGTACGGATGTA TGGTCCCAAA chrVI:221836-221985 + 60 1.14e-06 GGGTGTTAAA AATGTACGGGTGAA AAAAGTCTTA chrII:605782-606076 - 36 1.14e-06 TGATGGTGAA GATGTACAGGTGTA AAACTGTCAG chrXI:618858-619150 + 57 1.41e-06 AAATCTATTA GAGGCACGGATGGA AATAGTATTT chrXII:710575-710971 - 9 1.54e-06 CGCAAAATGA GATGCGTGGGTGTG ATTCCTGC chrV:85165-85448 - 43 1.54e-06 AATACATCGA GGGGTATGGGTGGA TGATATCACT chrX:75411-75511 + 23 1.54e-06 TTCAAATAGT GAGGTGTGGATGTA TAGAGAAATT chrVII:483345-483765 + 43 1.68e-06 AAAACAGAGT GATGTATGGGTGAT CCCAGCAATG chrIII:163488-163827 + 40 1.68e-06 GCCGCGGTTG GGTGCGTGGGTGCG GTAATTTAAC chrXV:216318-216625 - 37 1.88e-06 TGGGTTGAGG AAGGCGCGGGTGCT CGGATGTTCC chrIV:411328-411592 - 24 2.08e-06 TTGGGTGCCC GGGGTGTGGGTGTT TGATTTGTTT chrVII:438651-438874 + 46 2.24e-06 AACGTTCCAA AATGTATGGATGGT AAGGTCTTTT chrVII:649011-649303 + 42 2.72e-06 ATGGGTTCTC GTTGTACGGATGTT TAAAATGTCC chrXIV:63174-63418 + 72 3.00e-06 GGGTTGCTAA AATGTTCGGATGTA AAGTAGTATT chrV:53584-53858 + 64 3.00e-06 ACACATATTT GGTGTTCGGATGTT AAACAGGGTA chrIX:316194-316545 - 32 3.88e-06 TTTGTAAAAT AATGTATGGGTTCT AGTCTGAAAA chrVII:310567-310860 - 22 3.88e-06 GTGGGTCCCT GGTGTACAGATGTT ACATTGGTTA chrII:60914-61190 + 71 3.88e-06 AGCAGTTGGG GGTGTACAGATGTT AATGTAGTCT chrII:332376-332685 - 44 3.88e-06 TGGGTTTAGA ATTGTATGGGTGCA GCAAGGAAAT chrXIII:754393-754789 + 31 3.88e-06 CGCTATTCTG GATGTATGGGGGTA TTTTATGTCT chrXVI:188580-188976 - 61 4.25e-06 CATAGTAACC GATGCATGGGTTTT AAAAGTCACG chrI:68249-68643 - 30 4.25e-06 GACGTGCTGC GGTGCATGGCTGTT TTACCCGTTT chrIV:835855-836073 - 36 4.96e-06 GTGCGGTTGC GGGGCGTGGGTGTG CGCGCCGTTG chrXIV:675786-676109 + 11 5.40e-06 CTTCCTCATT GGGGTGCGGCTGCT GCAGGAACCT chrIX:99692-99953 + 56 6.37e-06 GGTGTTACAT GGTGTACCGATGCT TTAATTGCAC chrXVI:700012-700303 - 26 1.35e-05 GATTGGGTGT GATGTAAGGATTCG CGGTCCTCGA chrXII:731980-732272 + 85 1.45e-05 GATATCTTCG GATGCAAGGGTTCG AA chrXII:592418-592746 - 3 1.45e-05 GATATCTTCG GATGCAAGGGTTCG AA chrX:651379-651479 - 30 1.45e-05 AATAATTATG GGTATATGGGTGTT GTTGTATAAA chrX:90118-90218 - 42 1.68e-05 TATGGGTGAG AATGTTCAGGTGCA AATTTAAAAG chrVII:648273-648669 - 46 2.35e-05 AGAAGAAAGA GATGTAAGGGTACT GTTGGTAACT chrII:165135-165400 - 39 2.50e-05 GCTCTAACGC GGTGTATGGGTTAG ATTCGTAATA chrXI:612639-613035 - 19 2.50e-05 AACACCTACA AAGGCGCGGCTGGA ACATGGGGTG chrIV:117220-117526 - 62 2.67e-05 TAAATGTAAA AAGTTATGGGTGTA GATATGTATG chrXIII:288407-288507 + 58 3.03e-05 GTCTGGGTGA TATGTATGGACGTA GAATTGGTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RATGTAYGGRTGYW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:932132-932449 2.5e-08 26_[+3]_60 chrVIII:125972-126261 3.2e-08 34_[-3]_52 chrIV:1359455-1359757 6.4e-08 38_[-3]_48 chrV:68958-69456 8e-08 22_[+3]_64 chrII:45034-45327 8e-08 38_[-3]_48 chrXV:1028755-1029046 8e-08 56_[+3]_30 chrIV:222027-222250 1.1e-07 46_[+3]_40 chrXIII:225422-225677 1.4e-07 44_[-3]_42 chrIX:68304-68453 1.4e-07 20_[-3]_66 chrX:703312-703412 1.9e-07 52_[+3]_34 chrVII:534841-535168 2.2e-07 49_[+3]_37 chrXII:781513-781809 2.2e-07 44_[+3]_42 chrXII:796476-796800 2.7e-07 45_[+3]_41 chrV:396260-396521 2.7e-07 37_[-3]_49 chrXVI:378715-378896 2.7e-07 84_[+3]_2 chrXI:108847-109013 2.7e-07 39_[-3]_47 chrVII:149173-149476 3e-07 43_[+3]_43 chrXIII:551405-551747 4.5e-07 1_[+3]_85 chrII:477079-477420 6.2e-07 33_[-3]_53 chrIV:341371-341538 7e-07 38_[+3]_48 chrXVI:731968-732236 7e-07 50_[-3]_36 chrXVI:829093-829395 7e-07 26_[+3]_60 chrVII:254187-254526 7.7e-07 40_[+3]_46 chrV:305828-306150 8.6e-07 44_[-3]_42 chrXV:79827-80074 8.6e-07 47_[+3]_39 chrIV:1300998-1301250 8.6e-07 33_[-3]_53 chrXII:241694-241955 9.5e-07 31_[-3]_55 chrXV:678911-679136 9.5e-07 36_[+3]_50 chrVI:221836-221985 1.1e-06 59_[+3]_27 chrII:605782-606076 1.1e-06 35_[-3]_51 chrXI:618858-619150 1.4e-06 56_[+3]_30 chrXII:710575-710971 1.5e-06 8_[-3]_78 chrV:85165-85448 1.5e-06 42_[-3]_44 chrX:75411-75511 1.5e-06 22_[+3]_64 chrVII:483345-483765 1.7e-06 42_[+3]_44 chrIII:163488-163827 1.7e-06 39_[+3]_47 chrXV:216318-216625 1.9e-06 36_[-3]_50 chrIV:411328-411592 2.1e-06 23_[-3]_63 chrVII:438651-438874 2.2e-06 45_[+3]_41 chrVII:649011-649303 2.7e-06 41_[+3]_45 chrXIV:63174-63418 3e-06 71_[+3]_15 chrV:53584-53858 3e-06 63_[+3]_23 chrIX:316194-316545 3.9e-06 31_[-3]_55 chrVII:310567-310860 3.9e-06 21_[-3]_65 chrII:60914-61190 3.9e-06 70_[+3]_16 chrII:332376-332685 3.9e-06 43_[-3]_43 chrXIII:754393-754789 3.9e-06 30_[+3]_56 chrXVI:188580-188976 4.3e-06 60_[-3]_26 chrI:68249-68643 4.3e-06 29_[-3]_57 chrIV:835855-836073 5e-06 35_[-3]_51 chrXIV:675786-676109 5.4e-06 10_[+3]_76 chrIX:99692-99953 6.4e-06 55_[+3]_31 chrXVI:700012-700303 1.4e-05 25_[-3]_61 chrXII:731980-732272 1.4e-05 84_[+3]_2 chrXII:592418-592746 1.4e-05 2_[-3]_84 chrX:651379-651479 1.4e-05 29_[-3]_57 chrX:90118-90218 1.7e-05 41_[-3]_45 chrVII:648273-648669 2.3e-05 45_[-3]_41 chrII:165135-165400 2.5e-05 38_[-3]_48 chrXI:612639-613035 2.5e-05 18_[-3]_68 chrIV:117220-117526 2.7e-05 61_[-3]_25 chrXIII:288407-288507 3e-05 57_[+3]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RATGTAYGGRTGYW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RATGTAYGGRTGYW width=14 seqs=62 chrXII:932132-932449 ( 27) GATGTACGGATGTA 1 chrVIII:125972-126261 ( 35) GGTGTACGGATGCA 1 chrIV:1359455-1359757 ( 39) GATGTACGGATGTT 1 chrV:68958-69456 ( 23) GGGGTACGGGTGCA 1 chrII:45034-45327 ( 39) AATGTACGGATGCA 1 chrXV:1028755-1029046 ( 57) AATGTACGGATGCA 1 chrIV:222027-222250 ( 47) GGTGTACGGGTGTG 1 chrXIII:225422-225677 ( 45) AATGTACGGATGTA 1 chrIX:68304-68453 ( 21) AATGTACGGATGTA 1 chrX:703312-703412 ( 53) GATGCATGGGTGCT 1 chrVII:534841-535168 ( 50) AATGCACGGATGCA 1 chrXII:781513-781809 ( 45) AATGCACGGATGCA 1 chrXII:796476-796800 ( 46) GAGGCACGGATGCA 1 chrV:396260-396521 ( 38) AGTGTACGGATGTA 1 chrXVI:378715-378896 ( 85) AATGTACGGATGTT 1 chrXI:108847-109013 ( 40) AATGTACGGATGTT 1 chrVII:149173-149476 ( 44) GGTGTATGGATGCT 1 chrXIII:551405-551747 ( 2) AATGTATGGGTGCG 1 chrII:477079-477420 ( 34) AATGTGTGGGTGCA 1 chrIV:341371-341538 ( 39) AATGTACGGATGGA 1 chrXVI:731968-732236 ( 51) AAGGTATGGGTGTA 1 chrXVI:829093-829395 ( 27) GATGTAAGGATGCA 1 chrVII:254187-254526 ( 41) TATGCACGGGTGCA 1 chrV:305828-306150 ( 45) AATGTGTGGGTGTA 1 chrXV:79827-80074 ( 48) TATGTACGGGTGTT 1 chrIV:1300998-1301250 ( 34) AGTGCACGGATGTT 1 chrXII:241694-241955 ( 32) TATGTACGGATGTA 1 chrXV:678911-679136 ( 37) TATGTACGGATGTA 1 chrVI:221836-221985 ( 60) AATGTACGGGTGAA 1 chrII:605782-606076 ( 36) GATGTACAGGTGTA 1 chrXI:618858-619150 ( 57) GAGGCACGGATGGA 1 chrXII:710575-710971 ( 9) GATGCGTGGGTGTG 1 chrV:85165-85448 ( 43) GGGGTATGGGTGGA 1 chrX:75411-75511 ( 23) GAGGTGTGGATGTA 1 chrVII:483345-483765 ( 43) GATGTATGGGTGAT 1 chrIII:163488-163827 ( 40) GGTGCGTGGGTGCG 1 chrXV:216318-216625 ( 37) AAGGCGCGGGTGCT 1 chrIV:411328-411592 ( 24) GGGGTGTGGGTGTT 1 chrVII:438651-438874 ( 46) AATGTATGGATGGT 1 chrVII:649011-649303 ( 42) GTTGTACGGATGTT 1 chrXIV:63174-63418 ( 72) AATGTTCGGATGTA 1 chrV:53584-53858 ( 64) GGTGTTCGGATGTT 1 chrIX:316194-316545 ( 32) AATGTATGGGTTCT 1 chrVII:310567-310860 ( 22) GGTGTACAGATGTT 1 chrII:60914-61190 ( 71) GGTGTACAGATGTT 1 chrII:332376-332685 ( 44) ATTGTATGGGTGCA 1 chrXIII:754393-754789 ( 31) GATGTATGGGGGTA 1 chrXVI:188580-188976 ( 61) GATGCATGGGTTTT 1 chrI:68249-68643 ( 30) GGTGCATGGCTGTT 1 chrIV:835855-836073 ( 36) GGGGCGTGGGTGTG 1 chrXIV:675786-676109 ( 11) GGGGTGCGGCTGCT 1 chrIX:99692-99953 ( 56) GGTGTACCGATGCT 1 chrXVI:700012-700303 ( 26) GATGTAAGGATTCG 1 chrXII:731980-732272 ( 85) GATGCAAGGGTTCG 1 chrXII:592418-592746 ( 3) GATGCAAGGGTTCG 1 chrX:651379-651479 ( 30) GGTATATGGGTGTT 1 chrX:90118-90218 ( 42) AATGTTCAGGTGCA 1 chrVII:648273-648669 ( 46) GATGTAAGGGTACT 1 chrII:165135-165400 ( 39) GGTGTATGGGTTAG 1 chrXI:612639-613035 ( 19) AAGGCGCGGCTGGA 1 chrIV:117220-117526 ( 62) AAGTTATGGGTGTA 1 chrXIII:288407-288507 ( 58) TATGTATGGACGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RATGTAYGGRTGYW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 48807 bayes= 10.3257 E= 1.7e-053 33 -1260 147 -193 114 -1260 60 -325 -1260 -1260 1 139 -425 -1260 233 -425 -1260 43 -1260 127 136 -1260 -25 -267 -193 151 -1260 27 -225 -357 226 -1260 -1260 -1260 238 -1260 65 -199 129 -1260 -1260 -357 -357 165 -425 -1260 221 -167 -267 101 -125 65 70 -1260 -40 20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RATGTAYGGRTGYW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 62 E= 1.7e-053 0.387097 0.000000 0.532258 0.080645 0.677419 0.000000 0.290323 0.032258 0.000000 0.000000 0.193548 0.806452 0.016129 0.000000 0.967742 0.016129 0.000000 0.258065 0.000000 0.741935 0.790323 0.000000 0.161290 0.048387 0.080645 0.548387 0.000000 0.370968 0.064516 0.016129 0.919355 0.000000 0.000000 0.000000 1.000000 0.000000 0.483871 0.048387 0.467742 0.000000 0.000000 0.016129 0.016129 0.967742 0.016129 0.000000 0.887097 0.096774 0.048387 0.387097 0.080645 0.483871 0.500000 0.000000 0.145161 0.354839 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RATGTAYGGRTGYW MEME-3 regular expression -------------------------------------------------------------------------------- [GA][AG]TG[TC]A[CT]GG[AG]TG[TC][AT] -------------------------------------------------------------------------------- Time 846.37 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:254187-254526 1.26e-03 20_[-3(1.28e-06)]_6_[+3(7.66e-07)]_\ 46 chrVIII:411129-411617 7.12e-01 100 chrXVI:580328-580724 6.25e-01 100 chrXV:980557-980881 4.57e-05 18_[+2(3.78e-06)]_61 chrXI:108847-109013 5.49e-04 39_[-3(2.67e-07)]_47 chrXI:518851-519333 7.09e-02 100 chrIII:142596-142937 2.42e-03 29_[-2(3.62e-07)]_50 chrII:163755-164151 3.51e-01 100 chrIX:24960-25356 5.63e-01 100 chrXIV:88937-89679 9.65e-01 100 chrV:53584-53858 1.42e-02 63_[+3(3.00e-06)]_23 chrXIV:174148-174544 8.84e-01 100 chrXVI:819348-819766 1.61e-11 26_[+2(1.98e-09)]_4_[+1(9.66e-10)]_\ 20 chrXV:228165-228508 1.44e-04 49_[+2(4.02e-08)]_30 chrXIII:277454-277850 7.91e-01 100 chrXII:962885-963219 1.46e-05 27_[-2(1.01e-08)]_52 chrX:651379-651479 2.79e-02 29_[-3(1.45e-05)]_11_[-3(4.91e-05)]_\ 32 chrXII:374186-374534 1.34e-05 49_[+2(2.41e-09)]_30 chrXV:722977-723373 8.18e-02 22_[-1(9.09e-05)]_49 chrVII:738967-739314 1.65e-11 36_[+2(1.98e-09)]_4_[+1(9.66e-10)]_\ 10 chrVII:439511-439861 5.29e-01 100 chrVII:122128-122452 2.28e-12 33_[+2(2.24e-08)]_3_[+1(1.67e-11)]_\ 14 chrVII:454482-454868 4.98e-01 100 chrVII:774185-774673 6.36e-01 100 chrV:300850-301246 9.71e-01 100 chrXVI:829093-829395 1.70e-04 26_[+3(7.00e-07)]_60 chrXIV:187092-187488 9.36e-01 100 chrXIV:568033-568232 1.55e-03 37_[+2(4.45e-07)]_42 chrXIII:267999-268235 6.35e-01 100 chrVII:307829-308225 4.07e-01 100 chrVII:960333-960525 4.61e-01 100 chrXI:490800-491119 7.47e-06 63_[+2(2.41e-09)]_16 chrVIII:556055-556451 2.67e-01 100 chrV:77589-77938 9.94e-01 100 chrXVI:880197-880535 1.11e-05 27_[-2(1.98e-09)]_52 chrV:223276-223672 4.15e-02 100 chrVII:149173-149476 2.62e-03 43_[+3(3.04e-07)]_43 chrVIII:555838-556234 7.11e-01 100 chrVIII:466830-467138 2.95e-03 60_[+2(1.04e-06)]_19 chrII:256435-256831 8.49e-02 100 chrXII:460413-460780 8.91e-01 100 chrVIII:451465-452878 4.64e-01 100 chrXV:110868-111164 8.78e-10 10_[-1(1.21e-09)]_2_[-2(4.30e-06)]_\ 38 chrIV:1489128-1489756 5.57e-01 100 chrX:76062-76162 9.14e-01 100 chrXV:778988-779384 7.47e-01 100 chrVIII:147938-148051 3.82e-01 100 chrII:235116-235512 9.41e-01 100 chrX:119929-120029 8.28e-01 100 chrXVI:580528-580924 6.40e-01 100 chrXIV:230387-230549 1.29e-01 100 chrX:378206-378306 1.03e-03 49_[+2(2.35e-07)]_30 chrI:142822-143074 3.70e-01 100 chrXII:522990-523386 3.27e-01 100 chrXII:1019043-1019310 4.96e-01 100 chrII:89035-89431 9.44e-01 100 chrXII:201785-202333 3.46e-01 100 chrXIII:880556-880869 9.28e-01 100 chrIV:355615-356011 3.31e-01 100 chrV:130996-131306 1.46e-02 26_[-2(5.85e-06)]_53 chrVIII:75712-75945 7.32e-01 100 chrXIII:754393-754789 1.63e-02 30_[+3(3.88e-06)]_56 chrVII:365015-365411 8.81e-01 100 chrXVI:173315-173791 9.72e-01 100 chrX:354097-354197 1.24e-03 33_[+2(1.34e-06)]_46 chrII:405722-406154 7.32e-10 17_[+1(4.06e-11)]_30_[+2(4.59e-06)]_\ 3 chrV:443112-443383 1.74e-11 19_[-1(9.66e-10)]_4_[-2(1.98e-09)]_\ 27 chrXI:284451-284649 4.27e-01 100 chrIV:1269988-1270384 5.22e-01 100 chrX:617758-617858 9.01e-06 42_[+2(5.07e-09)]_37 chrXI:326232-327463 5.27e-01 100 chrXII:759156-759388 3.40e-01 100 chrXIV:575349-575548 3.52e-01 100 chrI:68249-68643 6.99e-03 29_[-3(4.25e-06)]_57 chrIX:69112-69508 8.68e-01 100 chrXVI:622423-622805 1.70e-05 41_[-2(7.93e-08)]_38 chrXI:162354-162694 4.74e-10 27_[-1(4.06e-11)]_2_[-2(2.88e-06)]_\ 21 chrX:123387-123487 8.74e-01 100 chrIV:1150728-1151085 1.20e-06 59_[-2(5.63e-10)]_20 chrVII:278230-278452 1.56e-01 100 chrX:415866-415966 9.50e-04 30_[-2(1.58e-06)]_49 chrXV:306964-307360 7.30e-01 100 chrXIV:631741-632066 2.86e-09 7_[-1(3.37e-10)]_2_[-2(7.78e-06)]_\ 41 chrXIII:288407-288507 1.15e-02 57_[+3(3.03e-05)]_29 chrXVI:405044-405658 9.17e-01 100 chrXII:837988-838582 9.51e-01 100 chrIV:768408-768804 3.06e-03 45_[-2(2.68e-06)]_34 chrX:126394-126494 5.97e-02 100 chrXIV:585755-586425 6.81e-01 100 chrXII:645003-645299 5.37e-01 100 chrXIV:726051-726360 1.46e-05 36_[-2(1.01e-08)]_43 chrVII:289316-289704 3.64e-01 100 chrIV:568731-569155 7.32e-10 16_[+1(4.06e-11)]_30_[+2(4.59e-06)]_\ 4 chrXV:978830-979092 9.21e-02 100 chrXIII:556147-556543 9.86e-01 100 chrIII:82364-82675 2.99e-07 7_[-1(2.32e-10)]_64 chrII:605154-605550 6.97e-01 100 chrII:681039-681781 1.62e-01 100 chrXIII:861180-861402 5.61e-01 100 chrIV:83403-83706 2.35e-11 48_[+2(3.62e-07)]_1_[+1(7.61e-12)]_\ 1 chrXI:567140-567536 1.58e-01 100 chrXV:254582-254978 1.61e-01 100 chrXII:838562-839148 7.90e-01 100 chrVII:480403-481356 2.78e-01 100 chrIII:163488-163827 4.69e-03 39_[+3(1.68e-06)]_16_[+3(8.05e-06)]_\ 17 chrXII:232090-234077 4.60e-01 100 chrII:557402-557798 9.75e-01 100 chrXVI:377051-377447 3.42e-01 100 chrVI:53240-53636 9.06e-01 100 chrXI:520166-520277 1.70e-01 100 chrXI:513245-513547 7.29e-07 [-1(3.61e-08)]_2_[-2(4.59e-06)]_48 chrIV:1352272-1352664 2.50e-09 62_[-1(1.67e-11)]_9 chrVIII:146133-146433 6.99e-11 23_[-1(1.19e-08)]_3_[-2(1.98e-09)]_\ 24 chrXII:784198-784559 4.20e-07 30_[+2(5.63e-10)]_49 chrXI:559145-559541 8.19e-01 100 chrIV:340660-341056 8.40e-01 100 chrXII:499077-499632 2.52e-01 100 chrIV:1075347-1075703 2.47e-06 11_[-1(1.31e-08)]_3_[-2(5.41e-05)]_\ 36 chrV:28984-29380 3.30e-02 30_[+2(2.24e-05)]_49 chrVIII:34544-35854 1.00e+00 100 chrXIII:163740-163868 5.20e-01 100 chrXIV:68473-68710 8.11e-01 100 chrXVI:435783-436137 4.54e-03 28_[-2(2.88e-06)]_51 chrIV:980837-981174 2.64e-07 74_[-2(1.02e-10)]_5 chrIV:1300998-1301250 1.30e-03 33_[-3(8.56e-07)]_3_[+3(4.34e-05)]_\ 36 chrIII:241544-241940 4.27e-01 100 chrXII:932132-932449 1.09e-04 26_[+3(2.54e-08)]_19_[+3(3.40e-07)]_\ 27 chrXII:638021-638641 4.38e-01 100 chrIII:228824-229019 4.69e-01 100 chrII:88144-88537 9.20e-01 100 chrXVI:744118-744487 5.80e-08 36_[+2(1.04e-06)]_2_[+1(2.39e-08)]_\ 12 chrXI:558910-559306 3.42e-02 57_[-2(7.48e-05)]_22 chrXVI:75489-75658 7.75e-01 100 chrV:381270-381666 7.47e-01 100 chrVII:599472-599868 3.62e-02 100 chrVIII:148034-148430 6.07e-01 100 chrXIII:480508-480859 2.28e-12 2_[-1(1.67e-11)]_3_[-2(2.24e-08)]_\ 45 chrX:75411-75511 1.02e-03 22_[+3(1.54e-06)]_28_[+3(3.00e-06)]_\ 22 chrVII:727864-728068 9.36e-01 100 chrII:311516-311878 2.07e-01 100 chrX:74699-74799 9.40e-01 100 chrXIV:96096-96492 8.78e-10 11_[-1(1.21e-09)]_2_[-2(4.30e-06)]_\ 13_[+2(4.67e-05)]_3 chrXIII:761842-762208 9.85e-01 100 chrXI:74445-74804 1.44e-04 54_[+2(4.02e-08)]_25 chrXIV:663737-664051 6.94e-01 100 chrXII:1002314-1002710 4.40e-01 100 chrXVI:40370-40471 8.78e-01 100 chrVIII:381546-382045 4.81e-01 100 chrXI:334278-334674 3.89e-01 100 chrXIV:63174-63418 7.67e-03 71_[+3(3.00e-06)]_15 chrXVI:692754-693150 4.81e-01 100 chrXIV:568356-568477 3.65e-01 100 chrII:226929-227290 2.64e-07 20_[+2(1.02e-10)]_59 chrIV:117220-117526 1.67e-02 61_[-3(2.67e-05)]_25 chrIX:99692-99953 1.32e-02 55_[+3(6.37e-06)]_31 chrXI:571208-571406 7.61e-01 100 chrXII:366092-366461 1.80e-01 100 chrV:269220-269616 9.43e-01 100 chrXVI:56025-56444 1.76e-04 64_[-2(1.58e-06)]_15 chrXII:721860-722256 5.21e-01 100 chrXIV:675786-676109 7.76e-03 10_[+3(5.40e-06)]_76 chrX:204564-204664 5.63e-03 59_[+2(4.59e-06)]_20 chrVII:878570-878977 9.27e-08 1_[-1(1.58e-07)]_36_[-2(1.58e-06)]_\ 13 chrX:233765-233865 6.28e-06 68_[+2(2.41e-09)]_11 chrX:139206-139306 8.35e-01 100 chrXII:639679-640075 9.76e-01 100 chrVII:319730-319945 7.34e-04 21_[+1(1.69e-07)]_50 chrVII:442277-442673 6.64e-01 100 chrXI:430744-431140 9.14e-01 100 chrXIV:516676-517072 9.99e-01 100 chrX:663801-663901 1.41e-01 100 chrXIII:509803-510199 1.65e-01 100 chrI:182405-182643 6.23e-01 100 chrXII:448527-448866 2.51e-08 18_[-1(6.86e-10)]_2_[-2(5.85e-06)]_\ 30 chrXIII:271539-271742 9.84e-01 100 chrX:424226-424326 1.52e-06 33_[+1(9.09e-05)]_17_[-2(1.01e-08)] chrXIII:551405-551747 2.86e-03 1_[+3(4.47e-07)]_1_[+3(3.42e-05)]_\ 70 chrVII:609673-609977 3.68e-02 100 chrXIII:168660-169087 3.44e-04 16_[+1(3.61e-08)]_55 chrXIII:420463-420820 2.00e-08 11_[-1(1.31e-08)]_4_[-2(2.35e-07)]_\ 35 chrVII:648273-648669 2.35e-02 45_[-3(2.35e-05)]_41 chrIV:356209-356388 8.14e-01 100 chrVIII:105047-105443 5.54e-01 100 chrII:82300-82696 2.71e-01 100 chrXI:578799-579183 2.46e-05 28_[+2(5.07e-09)]_51 chrVI:226600-226922 1.34e-04 23_[-2(2.24e-08)]_56 chrII:332376-332685 1.77e-02 43_[-3(3.88e-06)]_43 chrXIV:716159-716616 6.15e-01 100 chrV:467963-468076 1.74e-02 100 chrIV:626549-626945 8.66e-01 100 chrXIII:253356-253581 8.99e-01 100 chrXVI:297951-298347 8.67e-01 100 chrIV:1465940-1466085 1.12e-01 100 chrIV:1362374-1362615 3.02e-01 100 chrXVI:700533-700713 6.94e-01 100 chrXVI:114122-114518 1.24e-01 100 chrXVI:75794-75942 1.85e-02 69_[+2(8.98e-05)]_10 chrX:620587-620687 1.59e-01 58_[+3(8.50e-05)]_28 chrV:438554-438857 1.48e-03 49_[+2(2.35e-07)]_30 chrIV:1080530-1080926 9.26e-01 100 chrIII:123472-123799 2.86e-09 6_[-1(3.37e-10)]_2_[-2(7.78e-06)]_\ 42 chrII:605782-606076 2.89e-04 35_[-3(1.14e-06)]_28_[+3(3.42e-05)]_\ 9 chrII:625372-625736 7.92e-01 100 chrII:255317-255713 7.90e-01 100 chrXV:274494-274897 1.56e-06 32_[+2(5.63e-10)]_47 chrVII:483345-483765 7.05e-03 42_[+3(1.68e-06)]_44 chrIV:117786-118182 3.00e-01 100 chrV:101186-101582 5.30e-01 100 chrVIII:85215-85353 9.37e-01 100 chrIX:197423-197736 1.24e-01 100 chrXII:793742-794224 2.66e-04 12_[+1(3.61e-08)]_59 chrV:362882-363278 8.65e-01 100 chrXIII:220777-221173 1.01e-01 100 chrVII:399776-399994 9.46e-02 31_[-2(8.45e-05)]_48 chrXV:159278-160162 3.99e-01 100 chrVII:422917-423328 1.26e-03 24_[+2(1.58e-06)]_55 chrIX:317929-318325 1.77e-01 100 chrIX:210634-210869 7.91e-01 100 chrIX:68304-68453 9.60e-04 20_[-3(1.43e-07)]_66 chrVII:736154-736560 4.74e-10 37_[+2(2.88e-06)]_2_[+1(4.06e-11)]_\ 11 chrVII:961082-961478 6.61e-01 100 chrXV:226502-226837 2.35e-11 6_[-1(7.61e-12)]_1_[-2(3.62e-07)]_\ 43 chrIV:520820-521157 2.51e-08 38_[+2(5.85e-06)]_2_[+1(6.86e-10)]_\ 10 chrII:60914-61190 2.24e-02 70_[+3(3.88e-06)]_16 chrXI:364859-365255 4.54e-01 100 chrXII:734640-734965 2.28e-05 54_[+2(1.98e-09)]_25 chrXIV:721323-721719 7.49e-01 100 chrXV:30049-30281 6.08e-01 100 chrXIII:162346-162446 4.68e-01 100 chrXV:444972-445974 2.66e-01 100 chrV:176942-177347 2.99e-07 32_[+1(2.32e-10)]_39 chrXI:308046-308380 9.23e-04 28_[-2(2.35e-07)]_51 chrIV:392560-392956 5.27e-01 100 chrX:598317-598417 7.47e-01 100 chrXVI:378715-378896 3.33e-05 59_[+3(2.72e-06)]_11_[+3(2.67e-07)]_\ 2 chrXV:300946-301304 2.03e-03 26_[+2(4.45e-07)]_53 chrXVI:700012-700303 9.50e-04 25_[-3(1.35e-05)]_21_[-3(6.51e-05)]_\ 26 chrXII:921171-921567 6.22e-01 100 chrXVI:856747-857119 2.46e-11 23_[+2(1.98e-09)]_3_[+1(1.19e-08)]_\ 24 chrXVI:878625-879021 7.96e-01 100 chrVI:162073-162395 2.13e-11 48_[+2(3.62e-07)]_1_[+1(7.61e-12)]_\ 1 chrXI:109406-109802 5.42e-01 100 chrXI:618858-619150 1.58e-04 29_[-2(9.56e-05)]_6_[+3(1.41e-06)]_\ 30 chrXIV:302940-303261 7.02e-02 100 chrXV:216318-216625 1.42e-03 36_[-3(1.88e-06)]_50 chrVI:221836-221985 5.31e-03 59_[+3(1.14e-06)]_27 chrXV:87781-88177 4.36e-01 100 chrII:592289-592685 3.00e-01 100 chrXVI:280662-281427 2.56e-02 83_[-3(4.61e-05)]_3 chrXIII:272538-272934 6.11e-01 100 chrXVI:642353-642749 4.59e-02 27_[-1(7.77e-05)]_44 chrIX:215992-216388 9.88e-01 100 chrXV:304760-305156 8.08e-01 100 chrIV:125222-125618 9.70e-01 100 chrIII:149768-150073 5.08e-03 54_[+2(9.50e-07)]_25 chrVII:824448-824844 7.95e-03 4_[-1(4.78e-05)]_67 chrXIV:442854-443269 1.31e-01 100 chrXIII:372352-372607 2.04e-08 30_[-1(1.31e-08)]_4_[-2(2.35e-07)]_\ 16 chrXII:691222-691590 2.91e-01 100 chrXIII:354073-354469 5.34e-01 100 chrXI:140893-141252 2.99e-07 10_[-1(2.32e-10)]_61 chrVII:824648-825044 5.20e-01 100 chrIV:645060-645375 1.18e-08 [-1(6.86e-10)]_2_[-2(5.85e-06)]_48 chrXVI:188580-188976 9.74e-04 60_[-3(4.25e-06)]_26 chrIV:118351-118747 1.82e-01 100 chrXVI:821884-822115 4.84e-01 100 chrXIII:888471-888867 5.90e-01 100 chrXII:92400-92755 2.48e-03 25_[+2(4.45e-07)]_54 chrXV:436380-436819 8.62e-01 100 chrXIII:626637-626839 1.00e+00 100 chrIV:1359455-1359757 7.78e-04 38_[-3(6.44e-08)]_48 chrXIII:296882-298822 4.34e-02 7_[-3(4.34e-05)]_79 chrVIII:554159-554260 5.21e-01 100 chrX:156299-156399 1.83e-01 100 chrX:453571-453671 8.90e-01 100 chrXII:1018319-1018715 9.85e-01 100 chrXII:369280-370286 3.27e-01 100 chrIV:541479-541833 3.99e-01 100 chrII:255105-255352 6.14e-01 100 chrXIV:102571-102992 2.59e-04 14_[+1(3.07e-08)]_57 chrVIII:132949-133068 9.80e-01 100 chrVII:366128-366493 4.46e-01 100 chrXV:1028755-1029046 6.43e-04 30_[+3(5.48e-05)]_12_[+3(7.99e-08)]_\ 30 chrII:642919-643240 5.64e-03 23_[-2(2.88e-06)]_56 chrIV:619849-620188 1.55e-10 15_[-1(2.20e-08)]_3_[-2(2.41e-09)]_\ 32 chrX:227773-227873 9.70e-01 100 chrX:121324-121424 4.28e-01 100 chrV:396866-397262 4.23e-01 100 chrVIII:115995-116344 1.23e-11 2_[-1(1.22e-10)]_3_[-2(1.19e-08)]_\ 45 chrVIII:237735-238084 2.95e-09 3_[-1(9.96e-09)]_22_[-2(7.93e-08)]_\ 25 chrX:90118-90218 3.75e-02 41_[-3(1.68e-05)]_45 chrXIV:87329-87743 6.57e-01 100 chrXII:857030-857426 5.82e-02 100 chrVII:120955-121215 9.85e-01 100 chrVII:648069-648465 4.01e-01 100 chrXI:38684-39080 8.07e-01 100 chrXIII:552923-553135 2.23e-01 100 chrIV:221278-221674 1.36e-02 100 chrVII:148245-148641 3.56e-01 100 chrXIII:225422-225677 6.87e-04 44_[-3(1.43e-07)]_42 chrXII:592418-592746 1.08e-07 2_[-3(1.45e-05)]_45_[-2(5.07e-09)]_\ 18 chrXIV:494101-494497 1.20e-01 100 chrIV:308059-308309 5.84e-01 100 chrVII:311167-312110 8.46e-01 100 chrXVI:282519-282915 3.61e-01 100 chrXII:459546-460111 8.48e-01 100 chrXVI:303582-303890 7.43e-01 100 chrIV:601263-601659 2.56e-01 100 chrVII:1004077-1004385 5.34e-08 39_[+2(1.04e-06)]_2_[+1(2.39e-08)]_\ 9 chrVIII:148233-148629 1.09e-01 100 chrVII:706966-707221 4.09e-01 100 chrXIV:104680-105027 1.23e-11 6_[+2(1.19e-08)]_3_[+1(1.22e-10)]_\ 41 chrXVI:23214-23610 5.43e-02 100 chrVII:851078-851474 4.87e-01 100 chrI:72464-72975 3.44e-01 100 chrXII:952948-953058 4.93e-01 100 chrVII:438651-438874 5.27e-03 22_[+3(4.57e-06)]_9_[+3(2.24e-06)]_\ 41 chrVII:544441-544821 2.58e-07 10_[-1(3.61e-08)]_2_[-2(4.59e-06)]_\ 38 chrVI:180752-181206 5.64e-08 59_[-1(7.61e-12)]_12 chrII:478959-479286 9.79e-01 100 chrXI:259273-259669 3.49e-02 69_[+3(7.65e-05)]_17 chrXIV:721763-721868 9.94e-01 100 chrV:61220-62119 6.95e-01 100 chrV:397556-397952 5.29e-01 100 chrV:491126-491492 9.83e-01 100 chrVII:786951-787347 8.57e-01 100 chrXIII:626340-626505 9.24e-01 100 chrXI:558672-559068 4.20e-01 100 chrXV:377886-378229 4.93e-01 100 chrVII:556152-556548 6.25e-01 100 chrXV:621309-621705 9.93e-01 100 chrV:424885-425158 8.22e-01 100 chrXIII:123416-123812 5.68e-01 100 chrIII:90824-91062 1.31e-01 100 chrII:197335-197621 2.62e-05 70_[+2(1.98e-09)]_9 chrV:85165-85448 2.01e-03 42_[-3(1.54e-06)]_44 chrVII:876260-876594 2.28e-12 21_[+2(2.24e-08)]_3_[+1(1.67e-11)]_\ 26 chrXVI:109973-110369 9.43e-01 100 chrXVI:731968-732236 1.47e-03 50_[-3(7.00e-07)]_36 chrVII:845477-845870 2.35e-11 30_[+2(3.62e-07)]_1_[+1(7.61e-12)]_\ 19 chrXII:809316-809591 1.36e-01 100 chrXIII:168660-169097 1.40e-04 11_[+1(3.61e-08)]_60 chrXII:282820-283009 9.29e-01 100 chrXV:900225-900621 8.26e-02 100 chrX:73683-73783 5.94e-01 100 chrXV:288025-288377 3.04e-03 45_[+2(1.34e-06)]_34 chrXIII:334880-335256 2.28e-01 100 chrIII:168211-168550 1.55e-02 16_[-2(5.85e-06)]_63 chrVIII:125972-126261 1.84e-04 34_[-3(3.20e-08)]_[-3(2.20e-05)]_38 chrXV:92100-92496 8.46e-01 100 chrXV:79827-80074 3.25e-03 47_[+3(8.56e-07)]_39 chrIII:138010-138406 8.13e-01 100 chrX:293773-293873 8.93e-01 100 chrV:386147-386486 9.84e-01 100 chrX:181918-182018 5.92e-01 100 chrVII:310567-310860 1.02e-02 21_[-3(3.88e-06)]_65 chrX:651947-652047 1.11e-01 100 chrXV:779752-780933 3.56e-01 100 chrXI:364658-365054 9.22e-01 100 chrIX:248676-249052 1.05e-05 40_[+2(8.72e-10)]_39 chrI:171654-172008 8.64e-01 100 chrIV:914957-915161 6.97e-01 100 chrI:143249-143434 9.48e-01 100 chrX:414820-414920 2.28e-12 44_[+2(2.24e-08)]_3_[+1(1.67e-11)]_\ 3 chrII:45034-45327 5.84e-04 38_[-3(7.99e-08)]_5_[+3(1.26e-05)]_\ 29 chrV:469308-469627 1.48e-08 44_[+2(2.35e-07)]_4_[+1(1.31e-08)]_\ 2 chrXIII:51011-51235 9.34e-01 100 chrIV:1402993-1403268 3.98e-01 100 chrIV:130052-130323 4.23e-01 100 chrXII:198991-199695 7.57e-01 100 chrX:355200-355300 4.74e-10 2_[+2(2.88e-06)]_2_[+1(4.06e-11)]_\ 46 chrXV:448898-449232 6.95e-01 100 chrXV:678911-679136 4.90e-03 36_[+3(9.53e-07)]_50 chrX:523905-524005 1.02e-06 29_[-2(1.02e-10)]_50 chrII:9459-9728 4.39e-06 44_[+2(1.01e-08)]_35 chrVI:223317-223713 3.77e-01 100 chrXIII:463393-463753 6.91e-07 35_[+2(4.59e-06)]_2_[+1(3.61e-08)]_\ 13 chrXIII:30271-30557 9.04e-01 100 chrXI:458445-458800 1.31e-01 100 chrXI:612639-613035 5.54e-03 18_[-3(2.50e-05)]_68 chrI:72023-72478 2.80e-01 100 chrXIV:234278-234674 8.58e-02 100 chrVII:479332-480496 1.79e-01 100 chrIV:1175710-1176022 2.90e-08 17_[+2(4.45e-07)]_3_[+1(1.70e-08)]_\ 30 chrV:102208-102604 1.42e-01 100 chrXI:141762-142158 4.15e-01 100 chrV:424087-424483 8.35e-01 100 chrIX:324169-324384 5.58e-01 100 chrV:79012-79408 1.97e-01 100 chrIV:44131-44527 6.33e-01 100 chrXV:253175-253410 4.88e-01 100 chrXIII:362921-363245 1.89e-04 58_[+1(1.69e-07)]_13 chrXIII:252457-252853 7.53e-02 100 chrIII:295309-295757 1.23e-11 5_[+2(1.19e-08)]_3_[+1(1.22e-10)]_\ 42 chrX:517713-517813 2.73e-07 9_[-1(6.23e-08)]_2_[-2(9.50e-07)]_\ 39 chrVII:115338-115680 2.46e-05 33_[+2(5.07e-09)]_46 chrXIII:123188-123584 8.01e-01 100 chrXIII:499654-499906 4.89e-01 100 chrXVI:282719-283115 4.48e-01 100 chrXII:789647-790043 8.45e-01 100 chrIV:332819-333215 9.97e-01 100 chrX:390947-391047 2.59e-03 22_[-2(4.45e-07)]_57 chrIV:356583-356979 1.54e-01 100 chrII:606848-607244 1.71e-02 47_[-2(2.99e-05)]_32 chrX:531668-531768 3.91e-08 3_[+1(7.61e-12)]_68 chrXV:110292-110524 3.30e-01 100 chrXIII:352115-352461 1.32e-04 46_[+2(7.93e-08)]_33 chrXI:46661-46961 7.70e-04 19_[-2(2.32e-06)]_60 chrXIV:374723-375072 2.55e-10 26_[+2(4.02e-08)]_21_[+1(8.63e-10)]_\ 3 chrXIII:550500-550896 3.47e-01 100 chrXV:340160-340524 1.55e-10 21_[-1(2.20e-08)]_3_[-2(2.41e-09)]_\ 26 chrV:396260-396521 2.81e-04 37_[-3(2.67e-07)]_4_[-3(2.20e-05)]_\ 31 chrVII:346089-346496 2.25e-01 100 chrIV:721872-722088 4.56e-01 100 chrXVI:878824-879220 4.57e-01 100 chrXIV:415298-415694 2.55e-02 45_[-2(5.57e-05)]_34 chrX:538425-538525 2.24e-09 37_[+2(1.04e-06)]_2_[+1(5.44e-10)]_\ 11 chrXI:143267-143583 6.91e-01 100 chrVII:882411-883069 2.47e-01 100 chrVII:533906-534302 7.68e-01 100 chrXI:105297-105693 2.29e-01 100 chrXIII:259042-259391 2.64e-07 47_[-2(1.02e-10)]_32 chrVII:405413-405651 4.27e-07 15_[+1(4.06e-11)]_56 chrXII:855944-856340 8.00e-01 100 chrXV:29099-29495 4.46e-01 100 chrII:165135-165400 4.72e-02 38_[-3(2.50e-05)]_48 chrVII:823310-823688 2.04e-08 37_[+2(2.35e-07)]_4_[+1(1.31e-08)]_\ 9 chrX:59029-59129 1.08e-04 21_[-2(1.19e-08)]_58 chrXI:431979-432375 8.22e-01 100 chrXV:759087-759416 5.92e-01 100 chrXIII:504885-505115 1.43e-01 100 chrXV:977874-978270 7.67e-01 100 chrXIV:64175-64571 1.91e-01 100 chrV:288278-288670 9.11e-06 74_[-2(8.72e-10)]_5 chrXII:534471-534844 7.56e-01 100 chrXV:622211-622607 7.73e-01 100 chrXV:594268-594567 1.61e-07 1_[-1(3.03e-07)]_2_[-2(7.93e-07)]_\ 47 chrVII:440565-440987 2.92e-10 4_[-1(9.96e-09)]_22_[-2(7.93e-08)]_\ 24 chrI:166138-166445 4.67e-14 30_[+2(1.62e-09)]_3_[+1(1.05e-11)]_\ 17 chrXII:241694-241955 5.78e-03 31_[-3(9.53e-07)]_7_[-3(5.89e-06)]_\ 34 chrXII:263708-263895 5.08e-01 100 chrIV:341371-341538 3.15e-04 38_[+3(7.00e-07)]_48 chrIV:410220-410535 5.12e-06 56_[+2(1.98e-09)]_23 chrIV:411328-411592 1.78e-04 23_[-3(2.08e-06)]_14_[-3(4.61e-05)]_\ 35 chrII:645000-645350 2.99e-07 69_[+1(2.32e-10)]_2 chrXVI:338762-339093 2.53e-03 16_[-2(9.50e-07)]_63 chrI:142413-142853 7.95e-01 100 chrXV:796950-797317 5.26e-01 100 chrXII:300313-300749 9.42e-01 100 chrVI:157822-158162 5.12e-04 39_[-2(7.93e-08)]_40 chrIV:359411-359795 2.46e-05 28_[+2(5.07e-09)]_51 chrV:363591-363987 9.91e-01 100 chrIII:30498-30808 1.11e-01 100 chrVI:210495-210865 1.31e-07 3_[-1(3.61e-08)]_19_[-2(1.34e-06)]_\ 28 chrXVI:701309-701471 6.50e-02 100 chrXII:781513-781809 8.74e-04 26_[+3(6.15e-05)]_4_[+3(2.22e-07)]_\ 42 chrII:266219-266575 1.23e-11 35_[+2(1.19e-08)]_3_[+1(1.22e-10)]_\ 12 chrXII:797025-797352 2.99e-07 67_[+1(2.32e-10)]_4 chrXII:794224-795113 6.41e-01 100 chrIV:946134-946547 1.31e-07 26_[+2(1.34e-06)]_19_[+1(3.61e-08)]_\ 5 chrXIV:661101-661497 9.83e-01 100 chrXII:947664-948060 4.31e-01 100 chrX:115850-115950 1.76e-01 100 chrIV:835855-836073 1.61e-02 35_[-3(4.96e-06)]_51 chrV:51841-52237 3.76e-01 100 chrX:652267-652367 1.77e-01 100 chrXVI:406922-407318 2.56e-01 100 chrXIII:246212-246608 6.16e-01 100 chrXI:517823-518138 3.03e-05 62_[+2(1.98e-09)]_17 chrVII:930852-931173 2.35e-11 5_[-1(7.61e-12)]_1_[-2(3.62e-07)]_\ 44 chrIV:1256919-1257259 1.05e-03 14_[-2(7.93e-07)]_65 chrXVI:751930-752246 4.90e-01 100 chrXII:402360-402756 6.33e-01 100 chrIX:174926-175235 1.23e-11 5_[+2(1.19e-08)]_3_[+1(1.22e-10)]_\ 42 chrVII:828542-828963 4.74e-10 35_[-1(4.06e-11)]_2_[-2(2.88e-06)]_\ 13 chrIV:842036-842417 9.96e-01 100 chrXIII:379227-379565 9.50e-04 36_[-2(1.58e-06)]_43 chrIV:992704-992991 2.32e-11 39_[+2(3.62e-07)]_1_[+1(7.61e-12)]_\ 10 chrX:374200-374300 7.84e-07 18_[-1(3.61e-08)]_2_[-2(4.59e-06)]_\ 30 chrXII:1029054-1029450 8.95e-01 100 chrXVI:794967-795363 8.95e-01 100 chrXV:412126-412522 4.61e-01 100 chrII:169173-169569 6.71e-01 100 chrVII:316893-317289 9.76e-01 100 chrX:703312-703412 6.89e-04 23_[+3(1.68e-06)]_15_[+3(1.87e-07)]_\ 34 chrXIII:288890-289286 1.12e-01 100 chrIV:1245647-1246043 8.61e-01 100 chrV:138505-139061 9.35e-01 100 chrXIII:159255-159651 3.33e-01 100 chrV:322670-322838 2.15e-01 100 chrXV:832425-832682 1.00e+00 100 chrXII:370410-370856 5.76e-01 100 chrVII:649011-649303 7.86e-03 26_[+3(3.88e-06)]_1_[+3(2.72e-06)]_\ 45 chrIV:222027-222250 2.54e-04 46_[+3(1.10e-07)]_40 chrX:606213-606313 4.11e-01 100 chrII:414038-414268 8.64e-01 100 chrXIV:499785-500795 6.45e-01 100 chrXV:1028016-1028504 4.51e-01 100 chrXIII:162352-162748 7.89e-01 100 chrVII:364154-364550 2.38e-01 100 chrVII:185598-185919 2.28e-12 20_[-1(1.67e-11)]_3_[-2(2.24e-08)]_\ 27 chrIX:316194-316545 3.81e-03 31_[-3(3.88e-06)]_55 chrXII:731980-732272 1.08e-07 18_[+2(5.07e-09)]_45_[+3(1.45e-05)]_\ 2 chrIX:98276-98672 8.52e-01 100 chrXVI:860225-860561 2.32e-11 40_[+2(3.62e-07)]_1_[+1(7.61e-12)]_\ 9 chrIV:1095234-1095616 1.57e-08 9_[-1(6.23e-08)]_22_[-2(4.02e-08)]_\ 19 chrXVI:520286-520431 6.83e-02 100 chrXVI:769103-769478 1.64e-05 36_[-2(5.07e-09)]_43 chrVI:101232-101565 1.95e-03 32_[+2(4.45e-07)]_47 chrIV:628089-628485 8.82e-01 100 chrXIV:351933-352346 7.23e-01 100 chrVII:545295-545691 3.92e-01 100 chrVIII:54400-54632 5.22e-01 100 chrV:305828-306150 2.64e-03 44_[-3(8.56e-07)]_2_[-3(8.08e-05)]_\ 26 chrV:68958-69456 1.53e-05 22_[+3(7.99e-08)]_64 chrIII:138721-138917 3.36e-01 100 chrVIII:127283-127679 8.44e-01 100 chrXI:552104-552500 3.06e-01 100 chrX:422762-422862 1.72e-03 60_[+2(4.45e-07)]_19 chrIV:915765-916011 8.50e-01 100 chrXIV:745792-746107 8.85e-01 100 chrIV:45561-45957 5.92e-01 100 chrVI:137340-137700 3.98e-09 30_[-1(3.07e-08)]_4_[-2(4.02e-08)]_\ 16 chrV:483348-483744 2.20e-01 100 chrVII:287230-287615 3.63e-03 57_[-2(1.58e-06)]_22 chrX:526476-526576 9.79e-01 100 chrV:434456-434767 4.84e-01 100 chrVII:561558-561753 6.36e-01 100 chrII:301222-301415 6.35e-01 100 chrXIII:288502-288898 3.11e-01 100 chrVII:794281-794585 4.67e-14 38_[+2(1.62e-09)]_3_[+1(1.05e-11)]_\ 9 chrXII:796476-796800 1.46e-04 18_[+3(4.10e-05)]_13_[+3(2.67e-07)]_\ 41 chrXIII:162993-163389 9.36e-01 100 chrVIII:400939-401452 9.65e-01 100 chrIV:1201597-1201944 2.28e-12 34_[+2(2.24e-08)]_3_[+1(1.67e-11)]_\ 13 chrXII:211957-212353 9.58e-01 100 chrVII:730980-731323 3.98e-09 40_[+2(4.02e-08)]_4_[+1(3.07e-08)]_\ 6 chrXII:636924-637166 7.93e-02 100 chrVII:609403-609977 9.80e-01 100 chrXI:261478-261712 7.65e-01 100 chrIV:322914-323348 7.10e-01 100 chrXIII:652365-652874 9.32e-02 100 chrXIII:279871-280267 5.03e-02 100 chrXII:875217-875594 2.46e-05 25_[+2(5.07e-09)]_54 chrXII:710575-710971 4.39e-03 8_[-3(1.54e-06)]_78 chrVI:89883-90279 1.09e-01 100 chrXIII:290641-290991 2.99e-07 62_[+1(2.32e-10)]_9 chrIV:580034-580225 4.67e-01 100 chrV:492241-492600 3.70e-06 28_[-2(2.41e-09)]_51 chrXII:406979-407350 1.06e-01 100 chrXV:571800-572151 3.13e-07 37_[+2(4.59e-06)]_2_[+1(3.61e-08)]_\ 11 chrXIII:251826-252222 9.33e-01 100 chrVIII:475566-475901 1.41e-06 37_[-1(1.31e-08)]_3_[-2(5.41e-05)]_\ 10 chrIV:355987-356135 2.68e-01 100 chrXIV:19370-19766 2.88e-01 100 chrIX:183337-183676 2.41e-05 31_[-2(1.98e-09)]_48 chrVIII:127014-127410 8.07e-02 19_[-2(8.19e-05)]_60 chrVII:534841-535168 6.20e-04 49_[+3(2.22e-07)]_37 chrII:477079-477420 4.10e-03 14_[-3(5.89e-06)]_5_[-3(6.22e-07)]_\ 53 chrII:36244-36564 8.22e-05 48_[+2(7.93e-08)]_31 chrXII:712310-712706 8.86e-02 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************