Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.037149
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.069269
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.085756
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.019861
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.078028
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background
Finished invoke:
  name: bg  status: 0  time: 0.025831
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 825.259483
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 77.047985
Invoking:
  centrimo -seqlen 404 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.250223
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.474838
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background -primary DTGGYYBAGTKGKTARAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.640602
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background -primary GGRRTCGAACCSVKGAYCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.373928
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background -primary AACGGCTATCACATCACGCTTTCACCGTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.283103
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background -primary SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.367882
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background -primary ATGTAYGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.191273
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background -primary CGGHCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.256486
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background -primary ATGGCMA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.280261
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background -primary CGYTAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.274993
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background -primary AGAYCGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.245913
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background -primary AGMATGGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.223176
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background -primary CRCACGCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.218225
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background -primary AGTGRTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.245784
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background -primary CAGTGRC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.208721
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background --motif DTGGYYBAGTKGKTARAGSS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.269973
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background --motif GGRRTCGAACCSVKGAYCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.240228
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background --motif AACGGCTATCACATCACGCTTTCACCGTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.259873
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background --motif SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.133074
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background --motif ATGTAYGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.155025
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background --motif CGGHCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.147717
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background --motif ATGGCMA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.16145
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background --motif CGYTAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.144606
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background --motif AGAYCGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.142347
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background --motif AGMATGGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.177556
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background --motif CRCACGCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.183346
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background --motif AGTGRTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.173283
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background --motif CAGTGRC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/RM11-1A--IES2.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.181369
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.2485
Done