******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:424298-424398 1.0000 100 chrIV:1403004-1403204 1.0000 100 chrXII:729145-729549 1.0000 100 chrXIII:225405-225686 1.0000 100 chrIV:1355023-1355427 1.0000 100 chrV:305823-306161 1.0000 100 chrXI:74444-74837 1.0000 100 chrX:663861-663961 1.0000 100 chrXIII:550723-551127 1.0000 100 chrXV:854045-854310 1.0000 100 chrVII:609548-609802 1.0000 100 chrIX:254315-254496 1.0000 100 chrXVI:210092-210438 1.0000 100 chrX:233762-233862 1.0000 100 chrII:680813-681142 1.0000 100 chrV:86417-86791 1.0000 100 chrVIII:148202-148305 1.0000 100 chrX:204547-204647 1.0000 100 chrV:139355-139466 1.0000 100 chrIII:142608-142941 1.0000 100 chrXI:108827-109016 1.0000 100 chrX:414818-414918 1.0000 100 chrXIII:362904-363264 1.0000 100 chrV:269199-269603 1.0000 100 chrVII:400279-400683 1.0000 100 chrXII:232109-234094 1.0000 100 chrXI:326346-327478 1.0000 100 chrVII:611207-611351 1.0000 100 chrII:413971-414375 1.0000 100 chrXIV:61905-62309 1.0000 100 chrXV:438476-438869 1.0000 100 chrXV:897546-897950 1.0000 100 chrXV:226495-226850 1.0000 100 chrXVI:700002-700308 1.0000 100 chrIV:217652-218056 1.0000 100 chrIV:1095203-1095630 1.0000 100 chrII:680310-680575 1.0000 100 chrXIV:63157-63427 1.0000 100 chrVII:148239-148416 1.0000 100 chrXIII:297015-298802 1.0000 100 chrXII:636898-638627 1.0000 100 chrXVI:406224-406501 1.0000 100 chrXIII:557531-557744 1.0000 100 chrXII:720704-721108 1.0000 100 chrVIII:148231-148635 1.0000 100 chrXIII:761806-762210 1.0000 100 chrXIII:504872-505124 1.0000 100 chrXII:837851-839187 1.0000 100 chrI:151482-151886 1.0000 100 chrVIII:75005-75316 1.0000 100 chrII:332942-333346 1.0000 100 chrI:142532-143149 1.0000 100 chrXIII:732097-732337 1.0000 100 chrXIV:88969-89674 1.0000 100 chrXV:80670-80820 1.0000 100 chrXIII:372340-372616 1.0000 100 chrXV:29234-29819 1.0000 100 chrXV:113637-113967 1.0000 100 chrXV:315831-316235 1.0000 100 chrIX:99002-99406 1.0000 100 chrXII:951257-951420 1.0000 100 chrIV:1305473-1305820 1.0000 100 chrIV:1150707-1151095 1.0000 100 chrX:75413-75513 1.0000 100 chrIX:24973-25377 1.0000 100 chrX:139335-139435 1.0000 100 chrVII:123699-124103 1.0000 100 chrXVI:644708-645112 1.0000 100 chrXII:806047-806861 1.0000 100 chrXI:382742-383146 1.0000 100 chrXV:620711-620940 1.0000 100 chrI:166136-166550 1.0000 100 chrVII:930852-931184 1.0000 100 chrXI:69820-70224 1.0000 100 chrVI:137327-137701 1.0000 100 chrV:52704-52903 1.0000 100 chrII:9432-9735 1.0000 100 chrII:236966-237370 1.0000 100 chrXI:46675-46967 1.0000 100 chrVIII:555122-555526 1.0000 100 chrIII:107349-107624 1.0000 100 chrXII:721887-722291 1.0000 100 chrXII:713210-713515 1.0000 100 chrVI:64297-64478 1.0000 100 chrV:79083-79487 1.0000 100 chrXI:430870-431056 1.0000 100 chrXII:241687-241962 1.0000 100 chrIV:1017024-1017458 1.0000 100 chrX:704275-704375 1.0000 100 chrV:492239-492599 1.0000 100 chrII:414633-415037 1.0000 100 chrXI:283572-283836 1.0000 100 chrII:614480-614884 1.0000 100 chrXVI:112974-113378 1.0000 100 chrIV:130126-130310 1.0000 100 chrXV:980556-980907 1.0000 100 chrXVI:572128-572530 1.0000 100 chrII:393179-393583 1.0000 100 chrV:307057-307161 1.0000 100 chrXII:341161-341565 1.0000 100 chrXI:578800-579304 1.0000 100 chrIV:222022-222249 1.0000 100 chrXII:952062-952466 1.0000 100 chrXII:242310-242714 1.0000 100 chrXI:335457-335861 1.0000 100 chrXIII:272293-272697 1.0000 100 chrXII:797010-797367 1.0000 100 chrXIII:463385-463801 1.0000 100 chrIV:1300988-1301259 1.0000 100 chrXIV:104660-105040 1.0000 100 chrIII:227778-228201 1.0000 100 chrVII:479508-482724 1.0000 100 chrVIII:120262-120418 1.0000 100 chrXII:781505-781812 1.0000 100 chrXVI:104991-105395 1.0000 100 chrVII:561500-561752 1.0000 100 chrXV:505723-506127 1.0000 100 chrXIV:585660-586425 1.0000 100 chrVII:788377-788685 1.0000 100 chrXII:369563-370277 1.0000 100 chrXII:932134-932449 1.0000 100 chrXII:720910-721314 1.0000 100 chrIV:1359446-1359754 1.0000 100 chrII:82297-82701 1.0000 100 chrVII:438631-438862 1.0000 100 chrXII:282921-283617 1.0000 100 chrII:592264-592668 1.0000 100 chrXII:263683-263918 1.0000 100 chrVI:210495-210873 1.0000 100 chrVII:254172-254509 1.0000 100 chrX:123828-123928 1.0000 100 chrXVI:338751-339096 1.0000 100 chrIV:1489347-1489866 1.0000 100 chrVIII:62595-62923 1.0000 100 chrXII:522676-523080 1.0000 100 chrX:378204-378304 1.0000 100 chrVII:148504-148678 1.0000 100 chrVIII:451301-452817 1.0000 100 chrII:332366-332695 1.0000 100 chrXII:1019043-1019318 1.0000 100 chrXV:274487-274900 1.0000 100 chrIII:138439-138955 1.0000 100 chrV:250236-250494 1.0000 100 chrVII:310885-312094 1.0000 100 chrXV:254400-254659 1.0000 100 chrI:71831-73269 1.0000 100 chrVII:412152-412534 1.0000 100 chrV:131005-131331 1.0000 100 chrX:652094-652194 1.0000 100 chrX:73717-73817 1.0000 100 chrXII:731967-732273 1.0000 100 chrXV:867575-867979 1.0000 100 chrXIV:499812-500747 1.0000 100 chrXVI:435754-436139 1.0000 100 chrV:117634-118256 1.0000 100 chrV:396262-396527 1.0000 100 chrXII:784175-784567 1.0000 100 chrXIV:575307-575463 1.0000 100 chrII:405719-406157 1.0000 100 chrXVI:303296-304036 1.0000 100 chrXV:842538-842942 1.0000 100 chrIV:117220-117540 1.0000 100 chrXIV:241474-241653 1.0000 100 chrII:613525-613929 1.0000 100 chrXII:1018300-1018511 1.0000 100 chrII:406631-407035 1.0000 100 chrXII:426956-427338 1.0000 100 chrVII:677098-677502 1.0000 100 chrXIII:268013-268212 1.0000 100 chrXIII:420446-420827 1.0000 100 chrII:256404-256556 1.0000 100 chrXV:505174-505447 1.0000 100 chrXV:678088-678199 1.0000 100 chrIV:980821-981191 1.0000 100 chrI:182408-182634 1.0000 100 chrVIII:237734-238121 1.0000 100 chrXIII:551397-551751 1.0000 100 chrXII:260032-260436 1.0000 100 chrXVI:403720-404124 1.0000 100 chrXI:517811-518132 1.0000 100 chrIV:1410521-1410925 1.0000 100 chrXVI:795046-795450 1.0000 100 chrXIV:525029-525233 1.0000 100 chrXVI:378717-378912 1.0000 100 chrXII:962857-963236 1.0000 100 chrIV:1466236-1466640 1.0000 100 chrIX:248671-249025 1.0000 100 chrXIII:251800-252204 1.0000 100 chrXIII:499389-499980 1.0000 100 chrXII:348327-348528 1.0000 100 chrVII:648085-648489 1.0000 100 chrXVI:173075-173774 1.0000 100 chrIX:316899-317056 1.0000 100 chrX:569935-570035 1.0000 100 chrXIII:195941-196321 1.0000 100 chrXVI:560042-560464 1.0000 100 chrXI:458436-458809 1.0000 100 chrXIII:379201-379574 1.0000 100 chrXII:449870-450274 1.0000 100 chrXVI:689395-689823 1.0000 100 chrXII:628221-628622 1.0000 100 chrXII:546965-547369 1.0000 100 chrXIV:331381-331785 1.0000 100 chrXIII:861103-861507 1.0000 100 chrVII:851085-851489 1.0000 100 chrII:410208-410612 1.0000 100 chrXII:92379-92769 1.0000 100 chrVII:599446-599850 1.0000 100 chrXIV:722483-722887 1.0000 100 chrVI:82746-82925 1.0000 100 chrVI:226592-226912 1.0000 100 chrXVI:404960-405732 1.0000 100 chrIV:519615-519933 1.0000 100 chrVII:277749-278454 1.0000 100 chrVI:101201-101554 1.0000 100 chrIX:84367-84771 1.0000 100 chrXVI:520233-520491 1.0000 100 chrVII:706947-707225 1.0000 100 chrXI:284219-284412 1.0000 100 chrV:396825-397229 1.0000 100 chrVII:700483-701227 1.0000 100 chrXV:977812-978216 1.0000 100 chrXV:779757-780888 1.0000 100 chrVI:53292-53696 1.0000 100 chrXV:80841-81086 1.0000 100 chrXVI:377992-378396 1.0000 100 chrXII:515485-515649 1.0000 100 chrIV:619826-620207 1.0000 100 chrXV:110824-111158 1.0000 100 chrXIV:652434-652838 1.0000 100 chrIV:1461570-1461872 1.0000 100 chrX:120546-120646 1.0000 100 chrV:194119-194523 1.0000 100 chrII:255270-255387 1.0000 100 chrV:302859-303263 1.0000 100 chrV:424759-424940 1.0000 100 chrII:299980-300384 1.0000 100 chrV:61173-62123 1.0000 100 chrXIII:19914-20083 1.0000 100 chrV:469282-469613 1.0000 100 chrIV:1355230-1355634 1.0000 100 chrVII:363315-363719 1.0000 100 chrIV:45638-46042 1.0000 100 chrXVI:75711-75981 1.0000 100 chrXV:882896-883300 1.0000 100 chrIV:645045-645379 1.0000 100 chrIX:197420-197746 1.0000 100 chrXI:613208-613612 1.0000 100 chrXV:623979-624383 1.0000 100 chrII:88093-88496 1.0000 100 chrXIV:442838-443270 1.0000 100 chrX:90753-90853 1.0000 100 chrVII:960864-961268 1.0000 100 chrVII:401437-401635 1.0000 100 chrXV:409524-409928 1.0000 100 chrVI:162066-162395 1.0000 100 chrVII:316985-317167 1.0000 100 chrX:520946-521046 1.0000 100 chrXVI:769074-769490 1.0000 100 chrVI:221831-221985 1.0000 100 chrIV:218365-218769 1.0000 100 chrV:431020-431523 1.0000 100 chrIV:926469-926873 1.0000 100 chrVII:611819-612223 1.0000 100 chrV:434416-434776 1.0000 100 chrX:374177-374277 1.0000 100 chrVI:157833-158170 1.0000 100 chrVII:319720-319985 1.0000 100 chrV:78155-78342 1.0000 100 chrXI:513244-513553 1.0000 100 chrVII:661575-661921 1.0000 100 chrXIII:288306-288644 1.0000 100 chrXIV:568286-568532 1.0000 100 chrXV:710081-710357 1.0000 100 chrIV:915784-915990 1.0000 100 chrX:703313-703413 1.0000 100 chrII:642883-643252 1.0000 100 chrXV:29234-29672 1.0000 100 chrXII:819989-820393 1.0000 100 chrX:577208-577308 1.0000 100 chrVII:974835-975239 1.0000 100 chrIII:58177-58581 1.0000 100 chrXV:904817-905221 1.0000 100 chrVII:541670-542116 1.0000 100 chrXII:167855-168194 1.0000 100 chrVIII:34617-35164 1.0000 100 chrIV:488508-489063 1.0000 100 chrIV:768556-768960 1.0000 100 chrX:422783-422883 1.0000 100 chrXII:794566-795232 1.0000 100 chrVII:786955-787359 1.0000 100 chrX:622573-622673 1.0000 100 chrXII:930952-931356 1.0000 100 chrIV:601310-601574 1.0000 100 chrVII:365652-365761 1.0000 100 chrXVI:112831-112954 1.0000 100 chrV:78947-79144 1.0000 100 chrIV:116410-116814 1.0000 100 chrX:517669-517769 1.0000 100 chrIX:183310-183681 1.0000 100 chrXIV:518990-519173 1.0000 100 chrVII:845482-845913 1.0000 100 chrXV:288033-288408 1.0000 100 chrXVI:731969-732257 1.0000 100 chrXV:232682-233086 1.0000 100 chrIV:1239565-1239772 1.0000 100 chrXIII:67571-67975 1.0000 100 chrIV:1075330-1075715 1.0000 100 chrXII:374188-374586 1.0000 100 chrVII:774180-774550 1.0000 100 chrI:131491-131895 1.0000 100 chrXV:841619-842023 1.0000 100 chrV:176926-177402 1.0000 100 chrIV:914338-914551 1.0000 100 chrII:301266-301381 1.0000 100 chrVIII:146053-146446 1.0000 100 chrXIII:484282-484686 1.0000 100 chrXIV:663051-663455 1.0000 100 chrVII:185584-185926 1.0000 100 chrVII:960323-960467 1.0000 100 chrIV:410218-410584 1.0000 100 chrXVI:821651-822075 1.0000 100 chrVII:557008-557412 1.0000 100 chrXIV:495248-495544 1.0000 100 chrXV:30071-30253 1.0000 100 chrVII:845482-845915 1.0000 100 chrIX:324170-324399 1.0000 100 chrX:355200-355300 1.0000 100 chrIV:331087-331491 1.0000 100 chrIV:520799-521146 1.0000 100 chrIV:44248-44367 1.0000 100 chrXII:499012-499654 1.0000 100 chrVII:405407-405694 1.0000 100 chrXV:411175-411579 1.0000 100 chrXIV:374711-375081 1.0000 100 chrXIII:480481-480851 1.0000 100 chrXVI:280545-281496 1.0000 100 chrXII:951397-951563 1.0000 100 chrXII:214756-215105 1.0000 100 chrVII:787695-788099 1.0000 100 chrVI:224175-224579 1.0000 100 chrII:60927-61197 1.0000 100 chrVI:180784-181207 1.0000 100 chrXIII:499919-500733 1.0000 100 chrVIII:115972-116352 1.0000 100 chrXV:841978-842084 1.0000 100 chrI:78647-79051 1.0000 100 chrXIII:259034-259393 1.0000 100 chrVIII:381473-381908 1.0000 100 chrIV:437618-437962 1.0000 100 chrXV:282001-282347 1.0000 100 chrXVI:76399-76691 1.0000 100 chrXII:592413-592770 1.0000 100 chrX:76309-76409 1.0000 100 chrVIII:362191-362595 1.0000 100 chrIII:162718-163122 1.0000 100 chrXII:796467-796798 1.0000 100 chrXIV:302689-303427 1.0000 100 chrVII:364138-364542 1.0000 100 chrXIII:290627-290997 1.0000 100 chrX:466635-466735 1.0000 100 chrXI:615870-616274 1.0000 100 chrXII:198773-199597 1.0000 100 chrIV:434077-434452 1.0000 100 chrXVI:622403-622816 1.0000 100 chrXI:140858-141258 1.0000 100 chrVII:366129-366449 1.0000 100 chrVII:277114-277328 1.0000 100 chrVI:167308-167663 1.0000 100 chrX:608541-608641 1.0000 100 chrXIV:632452-632807 1.0000 100 chrVII:366439-366626 1.0000 100 chrII:168551-168955 1.0000 100 chrXI:334317-334854 1.0000 100 chrVII:806950-807266 1.0000 100 chrXVI:55878-56436 1.0000 100 chrVII:794266-794599 1.0000 100 chrVIII:126592-126996 1.0000 100 chrII:266224-266634 1.0000 100 chrV:135279-135644 1.0000 100 chrIII:214228-214632 1.0000 100 chrVII:115332-115683 1.0000 100 chrII:477072-477406 1.0000 100 chrXII:656799-657166 1.0000 100 chrVII:534040-534153 1.0000 100 chrXII:951960-952161 1.0000 100 chrXIII:163843-164046 1.0000 100 chrXV:968352-968756 1.0000 100 chrVII:440525-440995 1.0000 100 chrIV:555777-556211 1.0000 100 chrI:82026-82151 1.0000 100 chrVII:907013-907417 1.0000 100 chrI:138996-139359 1.0000 100 chrVII:801342-801746 1.0000 100 chrXIV:577272-577375 1.0000 100 chrXV:571801-572143 1.0000 100 chrXV:866619-866893 1.0000 100 chrV:301680-302084 1.0000 100 chrXV:594251-594589 1.0000 100 chrXV:444677-445951 1.0000 100 chrXI:38650-39054 1.0000 100 chrXV:619785-620189 1.0000 100 chrIX:370235-370624 1.0000 100 chrIV:1352277-1352674 1.0000 100 chrX:227805-227905 1.0000 100 chrXVI:880162-880542 1.0000 100 chrXII:459511-460092 1.0000 100 chrXVI:700506-700731 1.0000 100 chrIV:992683-993033 1.0000 100 chrII:237783-238187 1.0000 100 chrXIV:96081-96485 1.0000 100 chrXIV:253172-253576 1.0000 100 chrXIV:186975-187379 1.0000 100 chrXIII:353013-353417 1.0000 100 chrXII:448524-448885 1.0000 100 chrXIII:289277-289681 1.0000 100 chrII:592933-593238 1.0000 100 chrXI:308027-308380 1.0000 100 chrXVI:454490-454894 1.0000 100 chrXI:159056-159180 1.0000 100 chrXVI:744117-744499 1.0000 100 chrVIII:505048-505452 1.0000 100 chrIII:223613-224017 1.0000 100 chrIX:257421-257825 1.0000 100 chrIII:241744-242148 1.0000 100 chrXII:952776-952980 1.0000 100 chrVII:544445-544828 1.0000 100 chrXV:228160-228536 1.0000 100 chrVII:328425-328870 1.0000 100 chrIV:239048-239452 1.0000 100 chrXV:216311-216642 1.0000 100 chrIX:317296-317510 1.0000 100 chrXV:93002-93276 1.0000 100 chrVII:729177-729581 1.0000 100 chrXI:558966-559077 1.0000 100 chrIV:1163476-1163880 1.0000 100 chrIV:884214-884595 1.0000 100 chrIV:359404-359788 1.0000 100 chrVII:883458-883827 1.0000 100 chrIV:1270062-1270360 1.0000 100 chrXII:793742-794216 1.0000 100 chrXII:875215-875601 1.0000 100 chrVII:149167-149483 1.0000 100 chrXV:797950-798354 1.0000 100 chrVII:878579-878986 1.0000 100 chrX:59032-59132 1.0000 100 chrXIII:511255-511659 1.0000 100 chrVII:422915-423317 1.0000 100 chrII:88997-89401 1.0000 100 chrVII:122115-122492 1.0000 100 chrVII:439331-439613 1.0000 100 chrXVI:433827-433989 1.0000 100 chrXIV:631723-632077 1.0000 100 chrXV:87477-87881 1.0000 100 chrVIII:388779-389028 1.0000 100 chrV:85614-86441 1.0000 100 chrVI:225546-225950 1.0000 100 chrX:526303-526403 1.0000 100 chrXV:897295-897699 1.0000 100 chrXVI:134998-135402 1.0000 100 chrXVI:718517-719167 1.0000 100 chrVII:287210-287617 1.0000 100 chrXV:300932-301336 1.0000 100 chrXI:261319-261772 1.0000 100 chrIII:149754-150107 1.0000 100 chrVI:224415-224819 1.0000 100 chrIV:1256909-1257260 1.0000 100 chrXVI:109329-109733 1.0000 100 chrXV:159439-160181 1.0000 100 chrXV:622407-622811 1.0000 100 chrXIV:252178-252582 1.0000 100 chrX:538409-538509 1.0000 100 chrVII:437332-437736 1.0000 100 chrII:347430-347798 1.0000 100 chrXIII:651383-651787 1.0000 100 chrIII:168192-168547 1.0000 100 chrXII:1028309-1028514 1.0000 100 chrX:354069-354169 1.0000 100 chrVII:1004079-1004400 1.0000 100 chrXIII:246182-246586 1.0000 100 chrII:45823-45970 1.0000 100 chrXI:432005-432147 1.0000 100 chrXII:639401-639864 1.0000 100 chrIV:117794-118198 1.0000 100 chrXII:1029203-1029607 1.0000 100 chrXIII:552598-553002 1.0000 100 chrXIII:123313-123717 1.0000 100 chrXII:899296-899516 1.0000 100 chrXVI:282155-282559 1.0000 100 chrXV:353903-354293 1.0000 100 chrV:435652-435983 1.0000 100 chrVII:730968-731331 1.0000 100 chrVII:110381-110824 1.0000 100 chrXIV:174208-174384 1.0000 100 chrXIV:413920-414128 1.0000 100 chrVIII:134187-134522 1.0000 100 chrXIII:747761-748141 1.0000 100 chrXIV:108629-109033 1.0000 100 chrXI:162283-162719 1.0000 100 chrVII:857254-857649 1.0000 100 chrIV:835817-836115 1.0000 100 chrIV:323052-323338 1.0000 100 chrXIII:91860-92084 1.0000 100 chrVI:95520-95775 1.0000 100 chrXIV:230279-230534 1.0000 100 chrVIII:75625-75937 1.0000 100 chrIV:230256-230467 1.0000 100 chrII:392945-393349 1.0000 100 chrXVI:810544-810838 1.0000 100 chrIV:1175708-1176042 1.0000 100 chrVII:556193-556597 1.0000 100 chrII:605772-606100 1.0000 100 chrXIII:123112-123516 1.0000 100 chrVI:221133-221537 1.0000 100 chrXV:340142-340542 1.0000 100 chrXII:281909-282313 1.0000 100 chrXI:109400-109804 1.0000 100 chrV:441833-442613 1.0000 100 chrX:541389-541489 1.0000 100 chrVII:823312-823697 1.0000 100 chrV:138486-138877 1.0000 100 chrVIII:382959-383289 1.0000 100 chrXIII:626390-626757 1.0000 100 chrXII:47979-48151 1.0000 100 chrIX:214193-214597 1.0000 100 chrX:172733-172833 1.0000 100 chrX:115805-115905 1.0000 100 chrXIII:754515-754639 1.0000 100 chrVIII:149025-149170 1.0000 100 chrXIII:352105-352467 1.0000 100 chrIII:163515-163824 1.0000 100 chrVIII:125967-126250 1.0000 100 chrXIV:569769-570028 1.0000 100 chrX:531660-531760 1.0000 100 chrVIII:487729-488133 1.0000 100 chrXIV:102560-102971 1.0000 100 chrX:617735-617835 1.0000 100 chrXIV:24018-24422 1.0000 100 chrVIII:132905-133108 1.0000 100 chrXIII:352776-353180 1.0000 100 chrVII:545455-545859 1.0000 100 chrXII:712414-712818 1.0000 100 chrV:400320-400724 1.0000 100 chrXIII:288560-288769 1.0000 100 chrIV:355737-356044 1.0000 100 chrII:165137-165375 1.0000 100 chrXII:825875-826279 1.0000 100 chrXIV:546606-546766 1.0000 100 chrVII:738950-739323 1.0000 100 chrXVI:694490-694894 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 550 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 55000 N= 550 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.290 C 0.210 G 0.210 T 0.290 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--IES2/background): A 0.302 C 0.198 G 0.198 T 0.302 ******************************************************************************** ******************************************************************************** MOTIF GGRRTCGAACCSVKGAYCT MEME-1 width = 19 sites = 98 llr = 1567 E-value = 1.0e-296 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGRRTCGAACCSVKGAYCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3:65:::aa::13:36::: pos.-specific C :::1:7:::a7632::673 probability G 7a43::a::::33571:11 matrix T :::1a3::::2::3:3426 bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 * * **** Relative 1.4 * * **** * Entropy 1.2 * ******* * * (23.1 bits) 0.9 *** ******* * ** 0.7 *** ******** * ** 0.5 *** *************** 0.2 ******************* 0.0 ------------------- Multilevel GGAATCGAACCCGGGACCT consensus A GG T TGCTATTTC sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRRTCGAACCSVKGAYCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------- chrXIV:631723-632077 + 7 3.25e-11 GAGCCG GGACTCGAACCCGGGACCT CCCGCACCCT chrVII:794266-794599 - 78 2.72e-10 AACC GGAATCGAACCGATGACCT CTTCCTTGCA chrXII:214756-215105 + 14 2.72e-10 GGACGCAACC GGAATCGAACCGATGACCT CTTCCTTGCA chrI:166136-166550 - 17 2.72e-10 GGACGCAACC GGAATCGAACCGATGACCT CTTCCTTGCA chrXV:854045-854310 + 71 2.72e-10 GGACGCAACC GGAATCGAACCGATGACCT CTTCCTTGCA chrIV:992683-993033 - 65 4.76e-10 GCGCAAGCCC GGAATCGAACCGGGGGCCC AACGATGGCA chrXV:282001-282347 - 81 4.76e-10 C GGAATCGAACCGGGGGCCC AACGATGGCA chrVI:180784-181207 + 40 4.76e-10 GCGCAAGCCC GGAATCGAACCGGGGGCCC AACGATGGCA chrVII:845482-845915 - 42 4.76e-10 GCGCAAGCCC GGAATCGAACCGGGGGCCC AACGATGGCA chrVII:845482-845913 - 43 4.76e-10 GCGCAAGCCC GGAATCGAACCGGGGGCCC AACGATGGCA chrXVI:572128-572530 - 31 4.76e-10 GCGCAAGCCC GGAATCGAACCGGGGGCCC AACGATGGCA chrX:115805-115905 + 3 1.18e-09 GG GGAGTCGAACCCCGGTCTC CACGGTGAAA chrVII:328425-328870 - 28 1.18e-09 TCCGATACGG GGAGTCGAACCCCGGTCTC CACGGTGAAA chrIX:370235-370624 - 80 1.18e-09 GG GGAGTCGAACCCCGGTCTC CACGGTGAAA chrXI:140858-141258 + 21 1.18e-09 TCCGATACGG GGAGTCGAACCCCGGTCTC CACGGTGAAA chrXIII:290627-290997 - 81 1.18e-09 G GGAGTCGAACCCCGGTCTC CACGGTGAAA chrV:176926-177402 - 27 1.18e-09 TCCGATACGG GGAGTCGAACCCCGGTCTC CACGGTGAAA chrVII:541670-542116 - 49 1.18e-09 TCCGATACGG GGAGTCGAACCCCGGTCTC CACGGTGAAA chrVII:401437-401635 + 52 1.18e-09 TCCGATACGG GGAGTCGAACCCCGGTCTC CACGGTGAAA chrXII:797010-797367 - 82 1.18e-09 . GGAGTCGAACCCCGGTCTC CACGGTGAAA chrIV:1017024-1017458 + 27 1.18e-09 TCCGAAGCGG GGAGTCGAACCCCGGTCTC CACGGTGAGA chrVII:738950-739323 - 80 1.39e-09 GC GGGATCGAACCGCTGATCC CCGCGTTATT chrXIV:569769-570028 + 30 1.39e-09 GGTCTCTAGC GGGATCGAACCGCTGATCC CCGCGTTATT chrXVI:880162-880542 + 5 1.39e-09 TAGC GGGATCGAACCGCTGATCC CCGCGTTATT chrIV:1075330-1075715 + 11 1.39e-09 GTTCCAACCG AGGATCGAACTCGGGACCT TTGCCGTGTG chrIX:183310-183681 + 6 1.39e-09 CTAGC GGGATCGAACCGCTGATCC CCGCGTTATT chrVIII:388779-389028 + 51 2.22e-09 GGGCGAGCTG GGAATTGAACCCAGGGCCT CTCGCATGCT chrXV:980556-980907 - 77 2.22e-09 AGCTG GGAATTGAACCCAGGGCCT CTCGCATGCT chrXII:656799-657166 + 13 2.59e-09 GGACGAGTCC GGAATCGAACCGGAGACCT CTCCCATGCT chrIV:410218-410584 - 71 2.59e-09 GGACGAGTCC GGAATCGAACCGGAGACCT CTCCCATGCT chrVIII:146053-146446 + 54 2.59e-09 GGACGAGTCC GGAATCGAACCGGAGACCT CTCCCATGCT chrVII:774180-774550 - 77 2.59e-09 AGTCC GGAATCGAACCGGAGACCT CTCCCATGCT chrXIV:96081-96485 + 19 2.99e-09 GAGCGGTACG AGAATCGAACCCGTGTCCC CACCTTGGAA chrXV:110824-111158 + 32 2.99e-09 GAGCGGTACG AGAATCGAACCCGTGTCCC CACCTTGGAA chrVII:122115-122492 - 59 3.42e-09 GCCCTGTAGG GGGCTCGAACCCCTAACCT TATGATTAAG chrIV:1352277-1352674 + 52 3.42e-09 GCCCTGTAGG GGGCTCGAACCCCTAACCT TATGATTAAG chrV:135279-135644 + 25 3.42e-09 GCCCTGTAGG GGGCTCGAACCCCTAACCT TATGATTAAG chrXIII:480481-480851 + 16 3.42e-09 GCCCTGTAGG GGGCTCGAACCCCTAACCT TATGATTAAG chrVII:185584-185926 + 20 3.42e-09 GCCCTGTAGG GGGCTCGAACCCCTAACCT TATGATTAAG chrV:138486-138877 - 77 8.86e-09 CGATG GGGGTCGAACCCATAATCT TCTGATTAGA chrXI:162283-162719 + 47 8.86e-09 ACTCACGATG GGGGTCGAACCCATAATCT TCTGATTAGA chrXIII:747761-748141 + 2 8.86e-09 G GGGGTCGAACCCATAATCT TCTGATTAGA chrVII:405407-405694 - 12 8.86e-09 ACTCACGATG GGGGTCGAACCCATAATCT TCTGATTAGA chrX:355200-355300 - 10 8.86e-09 ACTCACGATG GGGGTCGAACCCATAATCT TCTGATTAG chrII:405719-406157 - 32 8.86e-09 ACTCACGATG GGGGTCGAACCCATAATCT TCTGATTAGA chrVII:823312-823697 - 72 2.26e-08 GATTTCGCCC AGGATCGAACTGGGGACGT TCTGCGTGTT chrXI:308027-308380 + 2 2.26e-08 C AGGATCGAACTGGGGACGT TCTGCGTGTT chrXIII:420446-420827 + 13 2.26e-08 GATTTCGCCC AGGATCGAACTGGGGACGT TCTGCGTGTT chrVII:412152-412534 + 12 2.26e-08 GATTTCGCCC AGGATCGAACTGGGGACGT TCTGCGTGTT chrX:378204-378304 - 79 2.26e-08 CCC AGGATCGAACTGGGGACGT TCTGCGTGTT chrXIII:372340-372616 + 28 2.26e-08 GATTTCGCCC AGGATCGAACTGGGGACGT TCTGCGTGTT chrVIII:134187-134522 - 59 2.51e-08 GGTCCTACCC GGATTCGAACCGGGGTTGT CCGGATCAAA chrXII:448524-448885 + 7 2.51e-08 CTACCC GGATTCGAACCGGGGTTGT CCGGATCAAA chrIV:488508-489063 + 73 2.51e-08 GATCCAACCG AGGTTCGAACTCGGGATCT TCGCCGTGT chrIV:645045-645379 + 2 2.51e-08 C GGATTCGAACCGGGGTTGT CCGGATCAAA chrV:250236-250494 - 13 2.51e-08 GGTCCTACCC GGATTCGAACCGGGGTTGT CCGGATCAAA chrXV:353903-354293 + 4 3.44e-08 ATC GGATTTGAACCGATGATCT CCACATTACT chrII:266224-266634 - 42 3.44e-08 GCTTCCAATC GGATTTGAACCGATGATCT CCACATTACT chrIV:434077-434452 + 61 3.44e-08 GCTTCCAATC GGATTTGAACCGATGATCT CCACATTACT chrVIII:115972-116352 + 6 3.44e-08 CAATC GGATTTGAACCGATGATCT CCACATTACT chrXIV:104660-105040 - 48 3.44e-08 GCTTCCAATC GGATTTGAACCGATGATCT CCACATTACT chrX:538409-538509 - 79 5.12e-08 ACG GGACTCGAACCCGCAGTCT TCTCCTTAGG chrX:541389-541489 - 63 5.64e-08 TCCGCGACGG GGAATTGAACCCCGATCTG GCACGCGACA chrXII:793742-794216 - 31 5.64e-08 TCCGCGACGG GGAATTGAACCCCGATCTG GCACGCGACA chrVII:544445-544828 + 2 5.64e-08 G GGAATTGAACCCCGATCTG GCACGCGACA chrXV:571801-572143 - 78 5.64e-08 ACGG GGAATTGAACCCCGATCTG GCACGCGACA chrIX:324170-324399 + 80 5.64e-08 TCCGCGACGG GGAATTGAACCCCGATCTG GC chrXIV:518990-519173 + 79 5.64e-08 TCCGCGACGG GGAATTGAACCCCGATCTG GCA chrX:374177-374277 + 23 5.64e-08 TCCGCGACGG GGAATTGAACCCCGATCTG GCACGCGACA chrXII:426956-427338 - 77 5.64e-08 GACGG GGAATTGAACCCCGATCTG GCACGCGACA chrXIII:463385-463801 - 53 5.64e-08 TCCGCGACGG GGAATTGAACCCCGATCTG GCACGCGACA chrX:204547-204647 - 75 5.64e-08 GCGACGG GGAATTGAACCCCGATCTG GCACGCGACA chrXI:578800-579304 - 29 8.87e-08 TCCTCATAGG GGGCTCGAACCCCTGACAT TTCGGTATCC chrVII:319720-319985 - 21 1.25e-07 GCCATCTCCT AGAATCGAACCAGGGTTTC ATCGGCCACA chrV:434416-434776 + 6 1.25e-07 CTCCT AGAATCGAACCAGGGTTTC ATCGGCCACA chrXIII:362904-363264 - 72 1.25e-07 GCCATCTCCT AGAATCGAACCAGGGTTTC ATCGGCCACA chrXIV:102560-102971 - 45 1.35e-07 GACCCCAGTG AGGGTTGAACTCACGATCT TGCGATTAAC chrXVI:810544-810838 - 79 1.35e-07 GTG AGGGTTGAACTCACGATCT TGCGATTAAC chrVII:730968-731331 - 82 1.35e-07 . AGGGTTGAACTCACGATCT TGCGATTAAC chrXV:228160-228536 - 77 1.35e-07 CAGTG AGGGTTGAACTCACGATCT TGCGATTAAC chrXVI:55878-56436 + 73 1.35e-07 GAAACGGACA GGAATTGAACCTGCAACCC TTCGATTGC chrXIV:632452-632807 - 64 1.35e-07 GACCCCAGTG AGGGTTGAACTCACGATCT TGCGATTAAC chrVI:137327-137701 + 33 1.35e-07 GACCCCAGTG AGGGTTGAACTCACGATCT TGCGATTAAC chrXI:74444-74837 - 78 1.35e-07 AGTG AGGGTTGAACTCACGATCT TGCGATTAAC chrVII:440525-440995 + 17 1.72e-07 GCGAATTCTG TGGATCGAACACAGGACCT CCAGATAACT chrXVI:560042-560464 + 6 1.72e-07 TTCTG TGGATCGAACACAGGACCT CCAGATAACT chrIV:1095203-1095630 + 15 1.72e-07 GCGAACTCTG TGGATCGAACACAGGACCT CCAGATATCT chrXV:340142-340542 + 18 1.86e-07 TTCCCCGCCA GGACTTGAACCTGGAATCT TCTGGTTCGT chrXII:374188-374586 - 61 1.86e-07 TTCCCCGCCA GGACTTGAACCTGGAATCT TCTGGTTCGT chrIV:619826-620207 + 14 1.86e-07 TTCCCCGCCA GGACTTGAACCTGGAATCT TCTGGTTCGT chrVII:1004079-1004400 - 69 2.68e-07 GCCACCTGTC AGAATTGAACTAACGACCT TTGCATTACA chrXVI:744117-744499 - 68 2.68e-07 GCCACCTGTC AGAATTGAACTAACGACCT TTGCATTACA chrIV:1175708-1176042 - 47 3.78e-07 GCTCCAGGGG AGGTTCGAACTCTCGACCT TCAGATTATG chrX:422783-422883 - 82 3.78e-07 . AGGTTCGAACTCTCGACCT TCAGATTATG chrII:642883-643252 + 1 5.19e-07 . AGGATCGAACTAAGGACCA ACAGATTTGC chrXVI:435754-436139 + 8 5.19e-07 CGCACTC AGGATCGAACTAAGGACCA ACAGATTTGC chrVI:167308-167663 - 61 5.51e-07 CTCCCGGGGG CGAGTCGAACGCCCGATCT CAAGATTTCG chrXV:288033-288408 - 81 5.51e-07 G CGAGTCGAACGCCCGATCT CAAGATTTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRRTCGAACCSVKGAYCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIV:631723-632077 3.3e-11 6_[+1]_75 chrVII:794266-794599 2.7e-10 77_[-1]_4 chrXII:214756-215105 2.7e-10 13_[+1]_68 chrI:166136-166550 2.7e-10 16_[-1]_65 chrXV:854045-854310 2.7e-10 70_[+1]_11 chrIV:992683-993033 4.8e-10 64_[-1]_17 chrXV:282001-282347 4.8e-10 80_[-1]_1 chrVI:180784-181207 4.8e-10 39_[+1]_42 chrVII:845482-845915 4.8e-10 41_[-1]_40 chrVII:845482-845913 4.8e-10 42_[-1]_39 chrXVI:572128-572530 4.8e-10 30_[-1]_51 chrX:115805-115905 1.2e-09 2_[+1]_79 chrVII:328425-328870 1.2e-09 27_[-1]_54 chrIX:370235-370624 1.2e-09 79_[-1]_2 chrXI:140858-141258 1.2e-09 20_[+1]_61 chrXIII:290627-290997 1.2e-09 80_[-1]_1 chrV:176926-177402 1.2e-09 26_[-1]_55 chrVII:541670-542116 1.2e-09 48_[-1]_33 chrVII:401437-401635 1.2e-09 51_[+1]_30 chrXII:797010-797367 1.2e-09 81_[-1] chrIV:1017024-1017458 1.2e-09 26_[+1]_55 chrVII:738950-739323 1.4e-09 79_[-1]_2 chrXIV:569769-570028 1.4e-09 29_[+1]_52 chrXVI:880162-880542 1.4e-09 4_[+1]_77 chrIV:1075330-1075715 1.4e-09 10_[+1]_71 chrIX:183310-183681 1.4e-09 5_[+1]_76 chrVIII:388779-389028 2.2e-09 50_[+1]_31 chrXV:980556-980907 2.2e-09 76_[-1]_5 chrXII:656799-657166 2.6e-09 12_[+1]_69 chrIV:410218-410584 2.6e-09 70_[-1]_11 chrVIII:146053-146446 2.6e-09 53_[+1]_28 chrVII:774180-774550 2.6e-09 76_[-1]_5 chrXIV:96081-96485 3e-09 18_[+1]_63 chrXV:110824-111158 3e-09 31_[+1]_50 chrVII:122115-122492 3.4e-09 58_[-1]_23 chrIV:1352277-1352674 3.4e-09 51_[+1]_30 chrV:135279-135644 3.4e-09 24_[+1]_57 chrXIII:480481-480851 3.4e-09 15_[+1]_66 chrVII:185584-185926 3.4e-09 19_[+1]_62 chrV:138486-138877 8.9e-09 76_[-1]_5 chrXI:162283-162719 8.9e-09 46_[+1]_35 chrXIII:747761-748141 8.9e-09 1_[+1]_80 chrVII:405407-405694 8.9e-09 11_[-1]_70 chrX:355200-355300 8.9e-09 9_[-1]_72 chrII:405719-406157 8.9e-09 31_[-1]_50 chrVII:823312-823697 2.3e-08 71_[-1]_10 chrXI:308027-308380 2.3e-08 1_[+1]_80 chrXIII:420446-420827 2.3e-08 12_[+1]_69 chrVII:412152-412534 2.3e-08 11_[+1]_70 chrX:378204-378304 2.3e-08 78_[-1]_3 chrXIII:372340-372616 2.3e-08 27_[+1]_54 chrVIII:134187-134522 2.5e-08 58_[-1]_23 chrXII:448524-448885 2.5e-08 6_[+1]_75 chrIV:488508-489063 2.5e-08 72_[+1]_9 chrIV:645045-645379 2.5e-08 1_[+1]_80 chrV:250236-250494 2.5e-08 12_[-1]_69 chrXV:353903-354293 3.4e-08 3_[+1]_78 chrII:266224-266634 3.4e-08 41_[-1]_40 chrIV:434077-434452 3.4e-08 60_[+1]_21 chrVIII:115972-116352 3.4e-08 5_[+1]_76 chrXIV:104660-105040 3.4e-08 47_[-1]_34 chrX:538409-538509 5.1e-08 78_[-1]_3 chrX:541389-541489 5.6e-08 62_[-1]_19 chrXII:793742-794216 5.6e-08 30_[-1]_51 chrVII:544445-544828 5.6e-08 1_[+1]_80 chrXV:571801-572143 5.6e-08 77_[-1]_4 chrIX:324170-324399 5.6e-08 79_[+1]_2 chrXIV:518990-519173 5.6e-08 78_[+1]_3 chrX:374177-374277 5.6e-08 22_[+1]_59 chrXII:426956-427338 5.6e-08 76_[-1]_5 chrXIII:463385-463801 5.6e-08 52_[-1]_29 chrX:204547-204647 5.6e-08 74_[-1]_7 chrXI:578800-579304 8.9e-08 28_[-1]_53 chrVII:319720-319985 1.2e-07 20_[-1]_61 chrV:434416-434776 1.2e-07 5_[+1]_76 chrXIII:362904-363264 1.2e-07 71_[-1]_10 chrXIV:102560-102971 1.4e-07 44_[-1]_37 chrXVI:810544-810838 1.4e-07 78_[-1]_3 chrVII:730968-731331 1.4e-07 81_[-1] chrXV:228160-228536 1.4e-07 76_[-1]_5 chrXVI:55878-56436 1.4e-07 72_[+1]_9 chrXIV:632452-632807 1.4e-07 63_[-1]_18 chrVI:137327-137701 1.4e-07 32_[+1]_49 chrXI:74444-74837 1.4e-07 77_[-1]_4 chrVII:440525-440995 1.7e-07 16_[+1]_65 chrXVI:560042-560464 1.7e-07 5_[+1]_76 chrIV:1095203-1095630 1.7e-07 14_[+1]_67 chrXV:340142-340542 1.9e-07 17_[+1]_64 chrXII:374188-374586 1.9e-07 60_[-1]_21 chrIV:619826-620207 1.9e-07 13_[+1]_68 chrVII:1004079-1004400 2.7e-07 68_[-1]_13 chrXVI:744117-744499 2.7e-07 67_[-1]_14 chrIV:1175708-1176042 3.8e-07 46_[-1]_35 chrX:422783-422883 3.8e-07 81_[-1] chrII:642883-643252 5.2e-07 [+1]_81 chrXVI:435754-436139 5.2e-07 7_[+1]_74 chrVI:167308-167663 5.5e-07 60_[-1]_21 chrXV:288033-288408 5.5e-07 80_[-1]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRRTCGAACCSVKGAYCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGRRTCGAACCSVKGAYCT width=19 seqs=98 chrXIV:631723-632077 ( 7) GGACTCGAACCCGGGACCT 1 chrVII:794266-794599 ( 78) GGAATCGAACCGATGACCT 1 chrXII:214756-215105 ( 14) GGAATCGAACCGATGACCT 1 chrI:166136-166550 ( 17) GGAATCGAACCGATGACCT 1 chrXV:854045-854310 ( 71) GGAATCGAACCGATGACCT 1 chrIV:992683-993033 ( 65) GGAATCGAACCGGGGGCCC 1 chrXV:282001-282347 ( 81) GGAATCGAACCGGGGGCCC 1 chrVI:180784-181207 ( 40) GGAATCGAACCGGGGGCCC 1 chrVII:845482-845915 ( 42) GGAATCGAACCGGGGGCCC 1 chrVII:845482-845913 ( 43) GGAATCGAACCGGGGGCCC 1 chrXVI:572128-572530 ( 31) GGAATCGAACCGGGGGCCC 1 chrX:115805-115905 ( 3) GGAGTCGAACCCCGGTCTC 1 chrVII:328425-328870 ( 28) GGAGTCGAACCCCGGTCTC 1 chrIX:370235-370624 ( 80) GGAGTCGAACCCCGGTCTC 1 chrXI:140858-141258 ( 21) GGAGTCGAACCCCGGTCTC 1 chrXIII:290627-290997 ( 81) GGAGTCGAACCCCGGTCTC 1 chrV:176926-177402 ( 27) GGAGTCGAACCCCGGTCTC 1 chrVII:541670-542116 ( 49) GGAGTCGAACCCCGGTCTC 1 chrVII:401437-401635 ( 52) GGAGTCGAACCCCGGTCTC 1 chrXII:797010-797367 ( 82) GGAGTCGAACCCCGGTCTC 1 chrIV:1017024-1017458 ( 27) GGAGTCGAACCCCGGTCTC 1 chrVII:738950-739323 ( 80) GGGATCGAACCGCTGATCC 1 chrXIV:569769-570028 ( 30) GGGATCGAACCGCTGATCC 1 chrXVI:880162-880542 ( 5) GGGATCGAACCGCTGATCC 1 chrIV:1075330-1075715 ( 11) AGGATCGAACTCGGGACCT 1 chrIX:183310-183681 ( 6) GGGATCGAACCGCTGATCC 1 chrVIII:388779-389028 ( 51) GGAATTGAACCCAGGGCCT 1 chrXV:980556-980907 ( 77) GGAATTGAACCCAGGGCCT 1 chrXII:656799-657166 ( 13) GGAATCGAACCGGAGACCT 1 chrIV:410218-410584 ( 71) GGAATCGAACCGGAGACCT 1 chrVIII:146053-146446 ( 54) GGAATCGAACCGGAGACCT 1 chrVII:774180-774550 ( 77) GGAATCGAACCGGAGACCT 1 chrXIV:96081-96485 ( 19) AGAATCGAACCCGTGTCCC 1 chrXV:110824-111158 ( 32) AGAATCGAACCCGTGTCCC 1 chrVII:122115-122492 ( 59) GGGCTCGAACCCCTAACCT 1 chrIV:1352277-1352674 ( 52) GGGCTCGAACCCCTAACCT 1 chrV:135279-135644 ( 25) GGGCTCGAACCCCTAACCT 1 chrXIII:480481-480851 ( 16) GGGCTCGAACCCCTAACCT 1 chrVII:185584-185926 ( 20) GGGCTCGAACCCCTAACCT 1 chrV:138486-138877 ( 77) GGGGTCGAACCCATAATCT 1 chrXI:162283-162719 ( 47) GGGGTCGAACCCATAATCT 1 chrXIII:747761-748141 ( 2) GGGGTCGAACCCATAATCT 1 chrVII:405407-405694 ( 12) GGGGTCGAACCCATAATCT 1 chrX:355200-355300 ( 10) GGGGTCGAACCCATAATCT 1 chrII:405719-406157 ( 32) GGGGTCGAACCCATAATCT 1 chrVII:823312-823697 ( 72) AGGATCGAACTGGGGACGT 1 chrXI:308027-308380 ( 2) AGGATCGAACTGGGGACGT 1 chrXIII:420446-420827 ( 13) AGGATCGAACTGGGGACGT 1 chrVII:412152-412534 ( 12) AGGATCGAACTGGGGACGT 1 chrX:378204-378304 ( 79) AGGATCGAACTGGGGACGT 1 chrXIII:372340-372616 ( 28) AGGATCGAACTGGGGACGT 1 chrVIII:134187-134522 ( 59) GGATTCGAACCGGGGTTGT 1 chrXII:448524-448885 ( 7) GGATTCGAACCGGGGTTGT 1 chrIV:488508-489063 ( 73) AGGTTCGAACTCGGGATCT 1 chrIV:645045-645379 ( 2) GGATTCGAACCGGGGTTGT 1 chrV:250236-250494 ( 13) GGATTCGAACCGGGGTTGT 1 chrXV:353903-354293 ( 4) GGATTTGAACCGATGATCT 1 chrII:266224-266634 ( 42) GGATTTGAACCGATGATCT 1 chrIV:434077-434452 ( 61) GGATTTGAACCGATGATCT 1 chrVIII:115972-116352 ( 6) GGATTTGAACCGATGATCT 1 chrXIV:104660-105040 ( 48) GGATTTGAACCGATGATCT 1 chrX:538409-538509 ( 79) GGACTCGAACCCGCAGTCT 1 chrX:541389-541489 ( 63) GGAATTGAACCCCGATCTG 1 chrXII:793742-794216 ( 31) GGAATTGAACCCCGATCTG 1 chrVII:544445-544828 ( 2) GGAATTGAACCCCGATCTG 1 chrXV:571801-572143 ( 78) GGAATTGAACCCCGATCTG 1 chrIX:324170-324399 ( 80) GGAATTGAACCCCGATCTG 1 chrXIV:518990-519173 ( 79) GGAATTGAACCCCGATCTG 1 chrX:374177-374277 ( 23) GGAATTGAACCCCGATCTG 1 chrXII:426956-427338 ( 77) GGAATTGAACCCCGATCTG 1 chrXIII:463385-463801 ( 53) GGAATTGAACCCCGATCTG 1 chrX:204547-204647 ( 75) GGAATTGAACCCCGATCTG 1 chrXI:578800-579304 ( 29) GGGCTCGAACCCCTGACAT 1 chrVII:319720-319985 ( 21) AGAATCGAACCAGGGTTTC 1 chrV:434416-434776 ( 6) AGAATCGAACCAGGGTTTC 1 chrXIII:362904-363264 ( 72) AGAATCGAACCAGGGTTTC 1 chrXIV:102560-102971 ( 45) AGGGTTGAACTCACGATCT 1 chrXVI:810544-810838 ( 79) AGGGTTGAACTCACGATCT 1 chrVII:730968-731331 ( 82) AGGGTTGAACTCACGATCT 1 chrXV:228160-228536 ( 77) AGGGTTGAACTCACGATCT 1 chrXVI:55878-56436 ( 73) GGAATTGAACCTGCAACCC 1 chrXIV:632452-632807 ( 64) AGGGTTGAACTCACGATCT 1 chrVI:137327-137701 ( 33) AGGGTTGAACTCACGATCT 1 chrXI:74444-74837 ( 78) AGGGTTGAACTCACGATCT 1 chrVII:440525-440995 ( 17) TGGATCGAACACAGGACCT 1 chrXVI:560042-560464 ( 6) TGGATCGAACACAGGACCT 1 chrIV:1095203-1095630 ( 15) TGGATCGAACACAGGACCT 1 chrXV:340142-340542 ( 18) GGACTTGAACCTGGAATCT 1 chrXII:374188-374586 ( 61) GGACTTGAACCTGGAATCT 1 chrIV:619826-620207 ( 14) GGACTTGAACCTGGAATCT 1 chrVII:1004079-1004400 ( 69) AGAATTGAACTAACGACCT 1 chrXVI:744117-744499 ( 68) AGAATTGAACTAACGACCT 1 chrIV:1175708-1176042 ( 47) AGGTTCGAACTCTCGACCT 1 chrX:422783-422883 ( 82) AGGTTCGAACTCTCGACCT 1 chrII:642883-643252 ( 1) AGGATCGAACTAAGGACCA 1 chrXVI:435754-436139 ( 8) AGGATCGAACTAAGGACCA 1 chrVI:167308-167663 ( 61) CGAGTCGAACGCCCGATCT 1 chrXV:288033-288408 ( 81) CGAGTCGAACGCCCGATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRRTCGAACCSVKGAYCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 45100 bayes= 9.3129 E= 1.0e-296 -19 -327 179 -330 -1326 -1326 234 -1326 102 -1326 97 -1326 75 -82 37 -130 -1326 -1326 -1326 172 -1326 181 -1326 2 -1326 -1326 234 -1326 172 -1326 -1326 -1326 172 -1326 -1326 -1326 -1326 234 -1326 -1326 -330 190 -327 -50 -208 148 77 -289 6 73 77 -389 -289 -37 143 -13 -19 -1326 190 -1326 102 -1326 -110 -3 -1326 168 -1326 28 -489 173 -95 -37 -389 43 -95 102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRRTCGAACCSVKGAYCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 98 E= 1.0e-296 0.265306 0.020408 0.683673 0.030612 0.000000 0.000000 1.000000 0.000000 0.612245 0.000000 0.387755 0.000000 0.510204 0.112245 0.255102 0.122449 0.000000 0.000000 0.000000 1.000000 0.000000 0.693878 0.000000 0.306122 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.030612 0.734694 0.020408 0.214286 0.071429 0.551020 0.336735 0.040816 0.316327 0.326531 0.336735 0.020408 0.040816 0.153061 0.530612 0.275510 0.265306 0.000000 0.734694 0.000000 0.612245 0.000000 0.091837 0.295918 0.000000 0.632653 0.000000 0.367347 0.010204 0.653061 0.102041 0.234694 0.020408 0.265306 0.102041 0.612245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRRTCGAACCSVKGAYCT MEME-1 regular expression -------------------------------------------------------------------------------- [GA]G[AG][AG]T[CT]GAAC[CT][CG][GCA][GT][GA][AT][CT][CT][TC] -------------------------------------------------------------------------------- Time 296.00 secs. ******************************************************************************** ******************************************************************************** MOTIF DTGGYYBAGTKGKTARAGSS MEME-2 width = 20 sites = 122 llr = 1777 E-value = 3.1e-314 ******************************************************************************** -------------------------------------------------------------------------------- Motif DTGGYYBAGTKGKTARAGSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3:3:::1a2::::17562:: pos.-specific C ::::753:::1::2::2:54 probability G 4:7a:22:8:5a51:42735 matrix T 4a::334::a3:56311121 bits 2.3 * * 2.1 * * 1.9 * * 1.6 * * ** * Relative 1.4 * * *** * Entropy 1.2 **** *** * (21.0 bits) 0.9 **** *** ** *** 0.7 ***** ****** * *** 0.5 ****** ****** ****** 0.2 ****** ************* 0.0 -------------------- Multilevel GTGGCCTAGTGGTTAAAGCG consensus T A TTC T G TG GC sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGGYYBAGTKGKTARAGSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrXII:784175-784567 + 39 7.11e-11 AACCGTCCCA GTGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrXV:274487-274900 + 36 7.11e-11 TCGTGTCCCA GTGGCCGAGTGGTTAAGGCG ATGCCCTGCT chrIV:1150707-1151095 - 65 7.11e-11 TTCAGTCCCA GTGGCCGAGTGGTTAAGGCG ATGCCTGCTA chrIV:437618-437962 + 38 2.03e-10 GTAAGGCAAC TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXIII:259034-259393 - 51 2.03e-10 GTATGGCAAC TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:167855-168194 - 26 2.03e-10 ATATGGCAAC TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:980821-981191 - 74 2.03e-10 AGGCAAC TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:1305473-1305820 + 40 2.03e-10 TTAAGGCAAC TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrV:86417-86791 + 56 2.03e-10 TTATGGCAAC TTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXVI:689395-689823 + 12 3.29e-10 TTTGGGCACT ATGGCCGAGTGGTTAAGGCG ACAGACTTGA chrIX:248671-249025 + 58 3.29e-10 TTTAGGCACT ATGGCCGAGTGGTTAAGGCG ACAGACTTGA chrIII:227778-228201 + 9 3.29e-10 ATGGCACT ATGGCCGAGTGGTTAAGGCG AGAGACTCGA chrX:617735-617835 + 57 1.23e-09 CAATGGGAGT TTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXII:592413-592770 - 53 1.23e-09 CAATGGGAGT TTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXII:731967-732273 + 26 1.23e-09 CAATGGGAGT TTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrVII:738950-739323 + 42 2.28e-09 AATAGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXIV:569769-570028 - 67 2.28e-09 CAATGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXVI:880162-880542 - 42 2.28e-09 TAATGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIX:183310-183681 - 43 2.28e-09 TCCTGGTCTC TTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXII:656799-657166 - 49 2.69e-09 AATTGGGCGT GTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrIV:410218-410584 + 34 2.69e-09 TATTGGGCGT GTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrVII:774180-774550 + 40 2.69e-09 AATTGGGCGT GTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXI:517811-518132 + 73 2.69e-09 CTATGGGCGT GTGGCGTAGTCGGTAGCGCG CTCCCTTA chrII:347430-347798 + 45 3.87e-09 ATACGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrVII:794266-794599 + 41 3.87e-09 TTGCGGGCAC ATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrXII:214756-215105 - 50 3.87e-09 TTTAGGGCAC ATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrIV:519615-519933 + 25 3.87e-09 TTACGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXII:962857-963236 - 34 3.87e-09 CGACGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrII:9432-9735 + 56 3.87e-09 TCGTGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrX:424298-424398 - 44 3.87e-09 AGATGGAGGG TTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXV:353903-354293 - 40 4.65e-09 TACTGCTTCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrX:59032-59132 - 23 4.65e-09 AGAAGCTTCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXII:875215-875601 + 24 4.65e-09 CTCATCCTTG TTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrIV:359404-359788 + 37 4.65e-09 CTCATCCTTG TTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrVII:115332-115683 + 37 4.65e-09 CTCATCCTTG TTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrII:266224-266634 + 5 4.65e-09 TTCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrVIII:115972-116352 - 42 4.65e-09 TAGAGCTTCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXVI:769074-769490 - 45 4.65e-09 CTCATCCTTG TTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXIV:104660-105040 + 11 4.65e-09 CTCAGCTTCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXV:113637-113967 + 56 4.65e-09 TTTAGCTTCT ATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXV:438476-438869 + 27 4.65e-09 CTCATCCTTG TTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXIV:102560-102971 + 7 1.66e-08 GACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXVI:810544-810838 + 41 1.66e-08 TTGCGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrVII:730968-731331 + 44 1.66e-08 AAAAGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXV:228160-228536 + 39 1.66e-08 ATTAGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXIV:632452-632807 + 26 1.66e-08 AAGTGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrVI:137327-137701 - 70 1.66e-08 GACTGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXI:74444-74837 + 40 1.66e-08 ATTAGACTCC ATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrIV:884214-884595 + 13 2.56e-08 AAATGCTCGT GTAGCTCAGTGGTTAGAGCT TCGTGCTTAT chrXIII:352105-352467 + 50 4.93e-08 ATAAGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrV:435652-435983 - 32 4.93e-08 AAGAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:122115-122492 + 22 4.93e-08 ATTAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:440525-440995 - 72 4.93e-08 TATGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrV:135279-135644 - 61 4.93e-08 AAAAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrXVI:622403-622816 - 47 4.93e-08 ATATGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXIII:480481-480851 - 52 4.93e-08 AGTAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrXIV:374711-375081 + 29 4.93e-08 ATAAGCGGAC TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVII:185584-185926 - 56 4.93e-08 AATAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrVI:157833-158170 - 31 4.93e-08 AGAAGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVI:226592-226912 - 33 4.93e-08 AAATGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrXVI:560042-560464 - 61 4.93e-08 TTGAGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:237734-238121 - 37 4.93e-08 GTAAGCGGAT TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrIV:1095203-1095630 - 70 4.93e-08 GTTAGCGGAC TTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrX:414818-414918 + 51 4.93e-08 ATTAGCCTTG TTGGCGCAATCGGTAGCGCG TATGACTCTT chrXV:340142-340542 - 54 6.33e-08 TCTGTTCCTC GTGGCCCAATGGTCACGGCG TCTGGCTACG chrXII:374188-374586 + 24 6.33e-08 CTTGTTCCTC GTGGCCCAATGGTCACGGCG TCTGGCTACG chrIV:619826-620207 - 50 6.33e-08 CTTGTTCCTC GTGGCCCAATGGTCACGGCG TCTGGCTACG chrV:492239-492599 - 30 6.33e-08 CCTATTCCTC GTGGCCCAATGGTCACGGCG TCTGGCTACG chrX:233762-233862 + 54 6.33e-08 CTTGTTCCTC GTGGCCCAATGGTCACGGCG TCTGGCTACG chrVII:857254-857649 - 65 1.56e-07 AAGTGGTTGT TTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:422915-423317 + 32 1.56e-07 AAGTGGTTGT TTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrIV:992683-993033 + 30 1.56e-07 GTGAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXV:282001-282347 + 46 1.56e-07 AAGCGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVI:180784-181207 - 74 1.56e-07 AGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:845482-845915 + 7 1.56e-07 GCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:845482-845913 + 8 1.56e-07 AGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVI:162066-162395 + 54 1.56e-07 ACAAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXIV:442838-443270 + 8 1.56e-07 TGGTTGT TTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrXII:628221-628622 + 18 1.56e-07 AAGTGGTTGT TTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:930852-931184 - 30 1.56e-07 GTAAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrXV:226495-226850 - 34 1.56e-07 TTCAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrIII:142608-142941 - 22 1.56e-07 ACTAGCGCAA GTGGTTTAGTGGTAAAATCC AACGTTGCCA chrVII:823312-823697 + 34 1.73e-07 GAGTGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXI:308027-308380 - 39 1.73e-07 AAGTGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:469282-469613 + 66 1.73e-07 AATTGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:420446-420827 - 50 1.73e-07 AACAGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:412152-412534 - 49 1.73e-07 AACTGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrX:378204-378304 + 41 1.73e-07 AATAGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrXIII:372340-372616 - 65 1.73e-07 ACCTGGTTTC GTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrIV:1175708-1176042 + 10 3.74e-07 AAAGCTTCA GTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrX:422783-422883 + 45 3.74e-07 GTATGCTTCA GTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrXV:300932-301336 + 19 4.09e-07 GATCGGGCGT GTGGTCTAGTGGTATGATTC TCGCTTTGGG chrI:138996-139359 + 31 4.09e-07 GTACGGGCGT GTGGTCTAGTGGTATGATTC TCGCTTTGGG chrVI:101201-101554 + 55 4.09e-07 ATTCGGGCGT GTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXII:92379-92769 + 30 4.09e-07 ATAAGGGCGT GTGGTCTAGTGGTATGATTC TCGCTTTGGG chrXIII:195941-196321 - 64 4.09e-07 ACAAGGGCGT GTGGTCTAGTGGTATGATTC TCGCTTTGGG chrX:354069-354169 + 52 5.75e-07 ATCACTCTCG GTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrIV:1256909-1257260 - 20 5.75e-07 CTTAGCGAAA GTGGTTCAGTGGTTAGAATT CATGCTTCCC chrXV:594251-594589 - 30 5.75e-07 AAACGCGCAA GTGGTTCAGTGGTTAGAATT TATGCTTCCC chrVI:167308-167663 + 8 5.75e-07 ACTCTCG GTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrXV:288033-288408 + 28 5.75e-07 GCTTCTCTCG GTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVI:210495-210873 - 48 5.75e-07 ACGACTCTCG GTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrX:541389-541489 + 27 2.30e-06 AAAATCCGTG ATAGTTTAATGGTCAGAATG GGCGCTTGTC chrVII:544445-544828 - 37 2.30e-06 TTCTTCCGTG ATAGTTTAATGGTCAGAATG GGCGCTTGTC chrXV:571801-572143 + 42 2.30e-06 AAAATCCGTG ATAGTTTAATGGTCAGAATG GGCGCTTGTC chrX:355200-355300 + 56 2.30e-06 TTCTTCCGTG ATAGTTTAATGGTCAGAATG GGCGCTTGTC chrXI:513244-513553 - 30 2.30e-06 ACGTTCCGTG ATAGTTTAATGGTCAGAATG GGCGCTTGTC chrX:374177-374277 - 58 2.30e-06 TTCTTCCGTG ATAGTTTAATGGTCAGAATG GGCGCTTGTC chrXII:426956-427338 + 41 2.30e-06 CTTATCCGTG ATAGTTTAATGGTCAGAATG GGCGCTTGTC chrII:405719-406157 + 78 2.30e-06 TTCTTCCGTG ATAGTTTAATGGTCAGAATG GGC chrXIII:463385-463801 + 17 2.30e-06 TTTGTCCGTG ATAGTTTAATGGTCAGAATG GGCGCTTGTC chrX:204547-204647 + 39 2.30e-06 AAAATCCGTG ATAGTTTAATGGTCAGAATG GGCGCTTGTC chrXIV:96081-96485 - 54 2.43e-06 ACATGGGCGG TTAGTGTAGTGGTTATCATC CCACCCTTCC chrXV:110824-111158 - 67 2.43e-06 ACCCGGGCGG TTAGTGTAGTGGTTATCATC CCACCCTTCC chrVIII:134187-134522 + 23 3.55e-06 TTCCGGTCCT ATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIII:168192-168547 - 28 3.55e-06 TCCTGGTCCT ATAGTGTAGTGGTTATCACT TTCGGTTTTG chrXII:448524-448885 - 42 3.55e-06 TTCCGGTCCT ATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIV:520799-521146 + 56 3.55e-06 TTAGGGTCCT ATAGTGTAGTGGTTATCACT TTCGGTTTTG chrIV:645045-645379 - 37 3.55e-06 TTACGGTCCT ATAGTGTAGTGGTTATCACT TTCGGTTTTG chrV:131005-131331 - 10 3.55e-06 AAGAGGTTTT ATAGTGTAGTGGTTATCACT TTCGGTTTT chrXVI:433827-433989 + 68 4.11e-06 AGGTTTGAAG GTGGCCAAGATGTTGAAGGC CGGTACCGTC chrXIV:631723-632077 - 42 4.52e-06 TACCGGGCGT GTGGTCTAGAGGTATGATTC TCGCTTAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGGYYBAGTKGKTARAGSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:784175-784567 7.1e-11 38_[+2]_42 chrXV:274487-274900 7.1e-11 35_[+2]_45 chrIV:1150707-1151095 7.1e-11 64_[-2]_16 chrIV:437618-437962 2e-10 37_[+2]_43 chrXIII:259034-259393 2e-10 50_[-2]_30 chrXII:167855-168194 2e-10 25_[-2]_55 chrIV:980821-981191 2e-10 73_[-2]_7 chrIV:1305473-1305820 2e-10 39_[+2]_41 chrV:86417-86791 2e-10 55_[+2]_25 chrXVI:689395-689823 3.3e-10 11_[+2]_69 chrIX:248671-249025 3.3e-10 57_[+2]_23 chrIII:227778-228201 3.3e-10 8_[+2]_72 chrX:617735-617835 1.2e-09 56_[+2]_24 chrXII:592413-592770 1.2e-09 52_[-2]_28 chrXII:731967-732273 1.2e-09 25_[+2]_55 chrVII:738950-739323 2.3e-09 41_[+2]_39 chrXIV:569769-570028 2.3e-09 66_[-2]_14 chrXVI:880162-880542 2.3e-09 41_[-2]_39 chrIX:183310-183681 2.3e-09 42_[-2]_38 chrXII:656799-657166 2.7e-09 48_[-2]_32 chrIV:410218-410584 2.7e-09 33_[+2]_47 chrVII:774180-774550 2.7e-09 39_[+2]_41 chrXI:517811-518132 2.7e-09 72_[+2]_8 chrII:347430-347798 3.9e-09 44_[+2]_36 chrVII:794266-794599 3.9e-09 40_[+2]_40 chrXII:214756-215105 3.9e-09 49_[-2]_31 chrIV:519615-519933 3.9e-09 24_[+2]_56 chrXII:962857-963236 3.9e-09 33_[-2]_47 chrII:9432-9735 3.9e-09 55_[+2]_25 chrX:424298-424398 3.9e-09 43_[-2]_37 chrXV:353903-354293 4.7e-09 39_[-2]_41 chrX:59032-59132 4.7e-09 22_[-2]_58 chrXII:875215-875601 4.7e-09 23_[+2]_57 chrIV:359404-359788 4.7e-09 36_[+2]_44 chrVII:115332-115683 4.7e-09 36_[+2]_44 chrII:266224-266634 4.7e-09 4_[+2]_76 chrVIII:115972-116352 4.7e-09 41_[-2]_39 chrXVI:769074-769490 4.7e-09 44_[-2]_36 chrXIV:104660-105040 4.7e-09 10_[+2]_70 chrXV:113637-113967 4.7e-09 55_[+2]_25 chrXV:438476-438869 4.7e-09 26_[+2]_54 chrXIV:102560-102971 1.7e-08 6_[+2]_74 chrXVI:810544-810838 1.7e-08 40_[+2]_40 chrVII:730968-731331 1.7e-08 43_[+2]_37 chrXV:228160-228536 1.7e-08 38_[+2]_42 chrXIV:632452-632807 1.7e-08 25_[+2]_55 chrVI:137327-137701 1.7e-08 69_[-2]_11 chrXI:74444-74837 1.7e-08 39_[+2]_41 chrIV:884214-884595 2.6e-08 12_[+2]_68 chrXIII:352105-352467 4.9e-08 49_[+2]_31 chrV:435652-435983 4.9e-08 31_[-2]_49 chrVII:122115-122492 4.9e-08 21_[+2]_59 chrVII:440525-440995 4.9e-08 71_[-2]_9 chrV:135279-135644 4.9e-08 60_[-2]_20 chrXVI:622403-622816 4.9e-08 46_[-2]_34 chrXIII:480481-480851 4.9e-08 51_[-2]_29 chrXIV:374711-375081 4.9e-08 28_[+2]_52 chrVII:185584-185926 4.9e-08 55_[-2]_25 chrVI:157833-158170 4.9e-08 30_[-2]_50 chrVI:226592-226912 4.9e-08 32_[-2]_48 chrXVI:560042-560464 4.9e-08 60_[-2]_20 chrVIII:237734-238121 4.9e-08 36_[-2]_44 chrIV:1095203-1095630 4.9e-08 69_[-2]_11 chrX:414818-414918 4.9e-08 50_[+2]_30 chrXV:340142-340542 6.3e-08 53_[-2]_27 chrXII:374188-374586 6.3e-08 23_[+2]_57 chrIV:619826-620207 6.3e-08 49_[-2]_31 chrV:492239-492599 6.3e-08 29_[-2]_51 chrX:233762-233862 6.3e-08 53_[+2]_27 chrVII:857254-857649 1.6e-07 64_[-2]_16 chrVII:422915-423317 1.6e-07 31_[+2]_49 chrIV:992683-993033 1.6e-07 29_[+2]_51 chrXV:282001-282347 1.6e-07 45_[+2]_35 chrVI:180784-181207 1.6e-07 73_[-2]_7 chrVII:845482-845915 1.6e-07 6_[+2]_74 chrVII:845482-845913 1.6e-07 7_[+2]_73 chrVI:162066-162395 1.6e-07 53_[+2]_27 chrXIV:442838-443270 1.6e-07 7_[+2]_73 chrXII:628221-628622 1.6e-07 17_[+2]_63 chrVII:930852-931184 1.6e-07 29_[-2]_51 chrXV:226495-226850 1.6e-07 33_[-2]_47 chrIII:142608-142941 1.6e-07 21_[-2]_59 chrVII:823312-823697 1.7e-07 33_[+2]_47 chrXI:308027-308380 1.7e-07 38_[-2]_42 chrV:469282-469613 1.7e-07 65_[+2]_15 chrXIII:420446-420827 1.7e-07 49_[-2]_31 chrVII:412152-412534 1.7e-07 48_[-2]_32 chrX:378204-378304 1.7e-07 40_[+2]_40 chrXIII:372340-372616 1.7e-07 64_[-2]_16 chrIV:1175708-1176042 3.7e-07 9_[+2]_71 chrX:422783-422883 3.7e-07 44_[+2]_36 chrXV:300932-301336 4.1e-07 18_[+2]_62 chrI:138996-139359 4.1e-07 30_[+2]_50 chrVI:101201-101554 4.1e-07 54_[+2]_26 chrXII:92379-92769 4.1e-07 29_[+2]_51 chrXIII:195941-196321 4.1e-07 63_[-2]_17 chrX:354069-354169 5.7e-07 51_[+2]_29 chrIV:1256909-1257260 5.7e-07 19_[-2]_61 chrXV:594251-594589 5.7e-07 29_[-2]_51 chrVI:167308-167663 5.7e-07 7_[+2]_73 chrXV:288033-288408 5.7e-07 27_[+2]_53 chrVI:210495-210873 5.7e-07 47_[-2]_33 chrX:541389-541489 2.3e-06 26_[+2]_54 chrVII:544445-544828 2.3e-06 36_[-2]_44 chrXV:571801-572143 2.3e-06 41_[+2]_39 chrX:355200-355300 2.3e-06 55_[+2]_25 chrXI:513244-513553 2.3e-06 29_[-2]_51 chrX:374177-374277 2.3e-06 57_[-2]_23 chrXII:426956-427338 2.3e-06 40_[+2]_40 chrII:405719-406157 2.3e-06 77_[+2]_3 chrXIII:463385-463801 2.3e-06 16_[+2]_64 chrX:204547-204647 2.3e-06 38_[+2]_42 chrXIV:96081-96485 2.4e-06 53_[-2]_27 chrXV:110824-111158 2.4e-06 66_[-2]_14 chrVIII:134187-134522 3.5e-06 22_[+2]_58 chrIII:168192-168547 3.5e-06 27_[-2]_53 chrXII:448524-448885 3.5e-06 41_[-2]_39 chrIV:520799-521146 3.5e-06 55_[+2]_25 chrIV:645045-645379 3.5e-06 36_[-2]_44 chrV:131005-131331 3.5e-06 9_[-2]_71 chrXVI:433827-433989 4.1e-06 67_[+2]_13 chrXIV:631723-632077 4.5e-06 41_[-2]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGGYYBAGTKGKTARAGSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DTGGYYBAGTKGKTARAGSS width=20 seqs=122 chrXII:784175-784567 ( 39) GTGGCCGAGTGGTTAAGGCG 1 chrXV:274487-274900 ( 36) GTGGCCGAGTGGTTAAGGCG 1 chrIV:1150707-1151095 ( 65) GTGGCCGAGTGGTTAAGGCG 1 chrIV:437618-437962 ( 38) TTGGCCGAGTGGTTAAGGCG 1 chrXIII:259034-259393 ( 51) TTGGCCGAGTGGTTAAGGCG 1 chrXII:167855-168194 ( 26) TTGGCCGAGTGGTTAAGGCG 1 chrIV:980821-981191 ( 74) TTGGCCGAGTGGTTAAGGCG 1 chrIV:1305473-1305820 ( 40) TTGGCCGAGTGGTTAAGGCG 1 chrV:86417-86791 ( 56) TTGGCCGAGTGGTTAAGGCG 1 chrXVI:689395-689823 ( 12) ATGGCCGAGTGGTTAAGGCG 1 chrIX:248671-249025 ( 58) ATGGCCGAGTGGTTAAGGCG 1 chrIII:227778-228201 ( 9) ATGGCCGAGTGGTTAAGGCG 1 chrX:617735-617835 ( 57) TTGGCCGAGTGGTTTAAGGC 1 chrXII:592413-592770 ( 53) TTGGCCGAGTGGTTTAAGGC 1 chrXII:731967-732273 ( 26) TTGGCCGAGTGGTTTAAGGC 1 chrVII:738950-739323 ( 42) TTGGCCCAGTTGGTTAAGGC 1 chrXIV:569769-570028 ( 67) TTGGCCCAGTTGGTTAAGGC 1 chrXVI:880162-880542 ( 42) TTGGCCCAGTTGGTTAAGGC 1 chrIX:183310-183681 ( 43) TTGGCCCAGTTGGTTAAGGC 1 chrXII:656799-657166 ( 49) GTGGCGTAGTCGGTAGCGCG 1 chrIV:410218-410584 ( 34) GTGGCGTAGTCGGTAGCGCG 1 chrVII:774180-774550 ( 40) GTGGCGTAGTCGGTAGCGCG 1 chrXI:517811-518132 ( 73) GTGGCGTAGTCGGTAGCGCG 1 chrII:347430-347798 ( 45) TTGGCCGAGTGGTCTAAGGC 1 chrVII:794266-794599 ( 41) ATGGCGCAGTTGGTAGCGCG 1 chrXII:214756-215105 ( 50) ATGGCGCAGTTGGTAGCGCG 1 chrIV:519615-519933 ( 25) TTGGCCGAGTGGTCTAAGGC 1 chrXII:962857-963236 ( 34) TTGGCCGAGTGGTCTAAGGC 1 chrII:9432-9735 ( 56) TTGGCCGAGTGGTCTAAGGC 1 chrX:424298-424398 ( 44) TTGGCCGAGTGGTCTAAGGC 1 chrXV:353903-354293 ( 40) ATGGCCAAGTTGGTAAGGCG 1 chrX:59032-59132 ( 23) ATGGCCAAGTTGGTAAGGCG 1 chrXII:875215-875601 ( 24) TTAGCTCAGTTGGTAGAGCG 1 chrIV:359404-359788 ( 37) TTAGCTCAGTTGGTAGAGCG 1 chrVII:115332-115683 ( 37) TTAGCTCAGTTGGTAGAGCG 1 chrII:266224-266634 ( 5) ATGGCCAAGTTGGTAAGGCG 1 chrVIII:115972-116352 ( 42) ATGGCCAAGTTGGTAAGGCG 1 chrXVI:769074-769490 ( 45) TTAGCTCAGTTGGTAGAGCG 1 chrXIV:104660-105040 ( 11) ATGGCCAAGTTGGTAAGGCG 1 chrXV:113637-113967 ( 56) ATGGCCAAGTTGGTAAGGCG 1 chrXV:438476-438869 ( 27) TTAGCTCAGTTGGTAGAGCG 1 chrXIV:102560-102971 ( 7) ATGGCCAAGTTGGTTAAGGC 1 chrXVI:810544-810838 ( 41) ATGGCCAAGTTGGTTAAGGC 1 chrVII:730968-731331 ( 44) ATGGCCAAGTTGGTTAAGGC 1 chrXV:228160-228536 ( 39) ATGGCCAAGTTGGTTAAGGC 1 chrXIV:632452-632807 ( 26) ATGGCCAAGTTGGTTAAGGC 1 chrVI:137327-137701 ( 70) ATGGCCAAGTTGGTTAAGGC 1 chrXI:74444-74837 ( 40) ATGGCCAAGTTGGTTAAGGC 1 chrIV:884214-884595 ( 13) GTAGCTCAGTGGTTAGAGCT 1 chrXIII:352105-352467 ( 50) TTAGCTCAGTTGGGAGAGCG 1 chrV:435652-435983 ( 32) TTGGCGCAATCGGTAGCGCG 1 chrVII:122115-122492 ( 22) TTGGCGCAATCGGTAGCGCG 1 chrVII:440525-440995 ( 72) TTAGCTCAGTTGGGAGAGCG 1 chrV:135279-135644 ( 61) TTGGCGCAATCGGTAGCGCG 1 chrXVI:622403-622816 ( 47) TTAGCTCAGTTGGGAGAGCG 1 chrXIII:480481-480851 ( 52) TTGGCGCAATCGGTAGCGCG 1 chrXIV:374711-375081 ( 29) TTAGCTCAGTTGGGAGAGCG 1 chrVII:185584-185926 ( 56) TTGGCGCAATCGGTAGCGCG 1 chrVI:157833-158170 ( 31) TTAGCTCAGTTGGGAGAGCG 1 chrVI:226592-226912 ( 33) TTGGCGCAATCGGTAGCGCG 1 chrXVI:560042-560464 ( 61) TTAGCTCAGTTGGGAGAGCG 1 chrVIII:237734-238121 ( 37) TTAGCTCAGTTGGGAGAGCG 1 chrIV:1095203-1095630 ( 70) TTAGCTCAGTTGGGAGAGCG 1 chrX:414818-414918 ( 51) TTGGCGCAATCGGTAGCGCG 1 chrXV:340142-340542 ( 54) GTGGCCCAATGGTCACGGCG 1 chrXII:374188-374586 ( 24) GTGGCCCAATGGTCACGGCG 1 chrIV:619826-620207 ( 50) GTGGCCCAATGGTCACGGCG 1 chrV:492239-492599 ( 30) GTGGCCCAATGGTCACGGCG 1 chrX:233762-233862 ( 54) GTGGCCCAATGGTCACGGCG 1 chrVII:857254-857649 ( 65) TTGGCCGAGCGGTCTAAGGC 1 chrVII:422915-423317 ( 32) TTGGCCGAGCGGTCTAAGGC 1 chrIV:992683-993033 ( 30) GTGGTTTAGTGGTAAAATCC 1 chrXV:282001-282347 ( 46) GTGGTTTAGTGGTAAAATCC 1 chrVI:180784-181207 ( 74) GTGGTTTAGTGGTAAAATCC 1 chrVII:845482-845915 ( 7) GTGGTTTAGTGGTAAAATCC 1 chrVII:845482-845913 ( 8) GTGGTTTAGTGGTAAAATCC 1 chrVI:162066-162395 ( 54) GTGGTTTAGTGGTAAAATCC 1 chrXIV:442838-443270 ( 8) TTGGCCGAGCGGTCTAAGGC 1 chrXII:628221-628622 ( 18) TTGGCCGAGCGGTCTAAGGC 1 chrVII:930852-931184 ( 30) GTGGTTTAGTGGTAAAATCC 1 chrXV:226495-226850 ( 34) GTGGTTTAGTGGTAAAATCC 1 chrIII:142608-142941 ( 22) GTGGTTTAGTGGTAAAATCC 1 chrVII:823312-823697 ( 34) GTGGTCTAGTCGGTTATGGC 1 chrXI:308027-308380 ( 39) GTGGTCTAGTCGGTTATGGC 1 chrV:469282-469613 ( 66) GTGGTCTAGTCGGTTATGGC 1 chrXIII:420446-420827 ( 50) GTGGTCTAGTCGGTTATGGC 1 chrVII:412152-412534 ( 49) GTGGTCTAGTCGGTTATGGC 1 chrX:378204-378304 ( 41) GTGGTCTAGTCGGTTATGGC 1 chrXIII:372340-372616 ( 65) GTGGTCTAGTCGGTTATGGC 1 chrIV:1175708-1176042 ( 10) GTAGCTCAGTAGGAAGAGCG 1 chrX:422783-422883 ( 45) GTAGCTCAGTAGGAAGAGCG 1 chrXV:300932-301336 ( 19) GTGGTCTAGTGGTATGATTC 1 chrI:138996-139359 ( 31) GTGGTCTAGTGGTATGATTC 1 chrVI:101201-101554 ( 55) GTGGTCTAGTGGTATGATTC 1 chrXII:92379-92769 ( 30) GTGGTCTAGTGGTATGATTC 1 chrXIII:195941-196321 ( 64) GTGGTCTAGTGGTATGATTC 1 chrX:354069-354169 ( 52) GTAGCCAAGTTGGTTTAAGG 1 chrIV:1256909-1257260 ( 20) GTGGTTCAGTGGTTAGAATT 1 chrXV:594251-594589 ( 30) GTGGTTCAGTGGTTAGAATT 1 chrVI:167308-167663 ( 8) GTAGCCAAGTTGGTTTAAGG 1 chrXV:288033-288408 ( 28) GTAGCCAAGTTGGTTTAAGG 1 chrVI:210495-210873 ( 48) GTAGCCAAGTTGGTTTAAGG 1 chrX:541389-541489 ( 27) ATAGTTTAATGGTCAGAATG 1 chrVII:544445-544828 ( 37) ATAGTTTAATGGTCAGAATG 1 chrXV:571801-572143 ( 42) ATAGTTTAATGGTCAGAATG 1 chrX:355200-355300 ( 56) ATAGTTTAATGGTCAGAATG 1 chrXI:513244-513553 ( 30) ATAGTTTAATGGTCAGAATG 1 chrX:374177-374277 ( 58) ATAGTTTAATGGTCAGAATG 1 chrXII:426956-427338 ( 41) ATAGTTTAATGGTCAGAATG 1 chrII:405719-406157 ( 78) ATAGTTTAATGGTCAGAATG 1 chrXIII:463385-463801 ( 17) ATAGTTTAATGGTCAGAATG 1 chrX:204547-204647 ( 39) ATAGTTTAATGGTCAGAATG 1 chrXIV:96081-96485 ( 54) TTAGTGTAGTGGTTATCATC 1 chrXV:110824-111158 ( 67) TTAGTGTAGTGGTTATCATC 1 chrVIII:134187-134522 ( 23) ATAGTGTAGTGGTTATCACT 1 chrIII:168192-168547 ( 28) ATAGTGTAGTGGTTATCACT 1 chrXII:448524-448885 ( 42) ATAGTGTAGTGGTTATCACT 1 chrIV:520799-521146 ( 56) ATAGTGTAGTGGTTATCACT 1 chrIV:645045-645379 ( 37) ATAGTGTAGTGGTTATCACT 1 chrV:131005-131331 ( 10) ATAGTGTAGTGGTTATCACT 1 chrXVI:433827-433989 ( 68) GTGGCCAAGATGTTGAAGGC 1 chrXIV:631723-632077 ( 42) GTGGTCTAGAGGTATGATTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGGYYBAGTKGKTARAGSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 44550 bayes= 10.2247 E= 3.1e-314 -12 -1357 87 25 -1357 -1357 -1357 172 4 -1357 180 -1357 -1357 -1357 234 -1357 -1357 173 -1357 19 -1357 141 -20 0 -104 58 -1 25 172 -1357 -1357 -1357 -75 -1357 205 -1357 -420 -259 -1357 165 -420 -42 143 0 -1357 -1357 234 -1357 -1357 -1357 122 84 -112 -1 -159 98 113 -1357 -459 12 65 -227 96 -162 94 -20 -7 -240 -62 -1357 178 -130 -1357 148 54 -88 -1357 99 143 -204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGGYYBAGTKGKTARAGSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 122 E= 3.1e-314 0.278689 0.000000 0.360656 0.360656 0.000000 0.000000 0.000000 1.000000 0.311475 0.000000 0.688525 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.655738 0.000000 0.344262 0.000000 0.524590 0.172131 0.303279 0.147541 0.295082 0.196721 0.360656 1.000000 0.000000 0.000000 0.000000 0.180328 0.000000 0.819672 0.000000 0.016393 0.032787 0.000000 0.950820 0.016393 0.147541 0.532787 0.303279 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.459016 0.540984 0.139344 0.196721 0.065574 0.598361 0.663934 0.000000 0.008197 0.327869 0.475410 0.040984 0.385246 0.098361 0.581967 0.172131 0.188525 0.057377 0.196721 0.000000 0.680328 0.122951 0.000000 0.549180 0.286885 0.163934 0.000000 0.393443 0.532787 0.073770 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGGYYBAGTKGKTARAGSS MEME-2 regular expression -------------------------------------------------------------------------------- [GTA]T[GA]G[CT][CT][TC]AGT[GT]G[TG]T[AT][AG]AG[CG][GC] -------------------------------------------------------------------------------- Time 567.15 secs. ******************************************************************************** ******************************************************************************** MOTIF AACGGCTATCACATCACGCTTTCACCGTG MEME-3 width = 29 sites = 11 llr = 410 E-value = 1.3e-078 ******************************************************************************** -------------------------------------------------------------------------------- Motif AACGGCTATCACATCACGCTTTCACCGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A a9:::::a::a:9::9:::::1:a::::1 pos.-specific C ::a::a:::a:a::9:a17:3:a:a9:1: probability G :1:aa:::::::1::1:9:::::::1a:9 matrix T ::::::a:a::::a1:::3a79:::::9: bits 2.3 **** * * * * * * 2.1 **** * * * * * * 1.9 **** * * * ** * *** * 1.6 * ********** ** ** * ***** * Relative 1.4 ******************** ******* Entropy 1.2 ******************** ******** (53.7 bits) 0.9 ***************************** 0.7 ***************************** 0.5 ***************************** 0.2 ***************************** 0.0 ----------------------------- Multilevel AACGGCTATCACATCACGCTTTCACCGTG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACGGCTATCACATCACGCTTTCACCGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrX:115805-115905 - 22 1.48e-18 GATATAGTGT AACGGCTATCACATCACGCTTTCACCGTG GAGACCGGGG chrIX:370235-370624 + 51 1.48e-18 GATATAGTGT AACGGCTATCACATCACGCTTTCACCGTG GAGACCGGGG chrXI:140858-141258 - 40 1.48e-18 GATATAGTGT AACGGCTATCACATCACGCTTTCACCGTG GAGACCGGGG chrXIII:290627-290997 + 52 1.48e-18 GATATAGTGT AACGGCTATCACATCACGCTTTCACCGTG GAGACCGGGG chrVII:541670-542116 + 20 1.48e-18 GATATAGTGT AACGGCTATCACATCACGCTTTCACCGTG GAGACCGGGG chrVII:401437-401635 - 71 1.48e-18 T AACGGCTATCACATCACGCTTTCACCGTG GAGACCGGGG chrXII:797010-797367 + 53 1.48e-18 GATATAGTGT AACGGCTATCACATCACGCTTTCACCGTG GAGACCGGGG chrXVI:210092-210438 - 7 1.48e-18 GATATAGTGT AACGGCTATCACATCACGCTTTCACCGTG GAGACC chrIX:197420-197746 + 72 1.01e-17 GATGTAGTGT AACGGCTATCACATCACGTTCTCACCGTG chrIV:1017024-1017458 - 46 1.01e-17 GATGTAGTGT AACGGCTATCACATCACGTTCTCACCGTG GAGACCGGGG chrIV:1075330-1075715 - 31 4.93e-13 CCAATAGTGT AGCGGCTATCACGTTGCCTTCACACGGCA AAGGTCCCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACGGCTATCACATCACGCTTTCACCGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:115805-115905 1.5e-18 21_[-3]_50 chrIX:370235-370624 1.5e-18 50_[+3]_21 chrXI:140858-141258 1.5e-18 39_[-3]_32 chrXIII:290627-290997 1.5e-18 51_[+3]_20 chrVII:541670-542116 1.5e-18 19_[+3]_52 chrVII:401437-401635 1.5e-18 70_[-3]_1 chrXII:797010-797367 1.5e-18 52_[+3]_19 chrXVI:210092-210438 1.5e-18 6_[-3]_65 chrIX:197420-197746 1e-17 71_[+3] chrIV:1017024-1017458 1e-17 45_[-3]_26 chrIV:1075330-1075715 4.9e-13 30_[-3]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACGGCTATCACATCACGCTTTCACCGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AACGGCTATCACATCACGCTTTCACCGTG width=29 seqs=11 chrX:115805-115905 ( 22) AACGGCTATCACATCACGCTTTCACCGTG 1 chrIX:370235-370624 ( 51) AACGGCTATCACATCACGCTTTCACCGTG 1 chrXI:140858-141258 ( 40) AACGGCTATCACATCACGCTTTCACCGTG 1 chrXIII:290627-290997 ( 52) AACGGCTATCACATCACGCTTTCACCGTG 1 chrVII:541670-542116 ( 20) AACGGCTATCACATCACGCTTTCACCGTG 1 chrVII:401437-401635 ( 71) AACGGCTATCACATCACGCTTTCACCGTG 1 chrXII:797010-797367 ( 53) AACGGCTATCACATCACGCTTTCACCGTG 1 chrXVI:210092-210438 ( 7) AACGGCTATCACATCACGCTTTCACCGTG 1 chrIX:197420-197746 ( 72) AACGGCTATCACATCACGTTCTCACCGTG 1 chrIV:1017024-1017458 ( 46) AACGGCTATCACATCACGTTCTCACCGTG 1 chrIV:1075330-1075715 ( 31) AGCGGCTATCACGTTGCCTTCACACGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACGGCTATCACATCACGCTTTCACCGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 39600 bayes= 12.1686 E= 1.3e-078 172 -1010 -1010 -1010 159 -1010 -112 -1010 -1010 234 -1010 -1010 -1010 -1010 234 -1010 -1010 -1010 234 -1010 -1010 234 -1010 -1010 -1010 -1010 -1010 172 172 -1010 -1010 -1010 -1010 -1010 -1010 172 -1010 234 -1010 -1010 172 -1010 -1010 -1010 -1010 234 -1010 -1010 159 -1010 -112 -1010 -1010 -1010 -1010 172 -1010 220 -1010 -173 159 -1010 -112 -1010 -1010 234 -1010 -1010 -1010 -112 220 -1010 -1010 188 -1010 -15 -1010 -1010 -1010 172 -1010 47 -1010 126 -173 -1010 -1010 159 -1010 234 -1010 -1010 172 -1010 -1010 -1010 -1010 234 -1010 -1010 -1010 220 -112 -1010 -1010 -1010 234 -1010 -1010 -112 -1010 159 -173 -1010 220 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACGGCTATCACATCACGCTTTCACCGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 11 E= 1.3e-078 1.000000 0.000000 0.000000 0.000000 0.909091 0.000000 0.090909 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.909091 0.000000 0.090909 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.909091 0.000000 0.090909 0.909091 0.000000 0.090909 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 0.727273 0.000000 0.272727 0.000000 0.000000 0.000000 1.000000 0.000000 0.272727 0.000000 0.727273 0.090909 0.000000 0.000000 0.909091 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.090909 0.000000 0.909091 0.090909 0.000000 0.909091 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACGGCTATCACATCACGCTTTCACCGTG MEME-3 regular expression -------------------------------------------------------------------------------- AACGGCTATCACATCACG[CT]T[TC]TCACCGTG -------------------------------------------------------------------------------- Time 820.24 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:424298-424398 8.42e-06 43_[-2(3.87e-09)]_37 chrIV:1403004-1403204 9.54e-01 100 chrXII:729145-729549 8.32e-01 100 chrXIII:225405-225686 2.30e-01 100 chrIV:1355023-1355427 6.59e-01 100 chrV:305823-306161 6.92e-01 100 chrXI:74444-74837 1.53e-08 39_[+2(1.66e-08)]_18_[-1(1.35e-07)]_\ 4 chrX:663861-663961 2.23e-01 100 chrXIII:550723-551127 4.68e-01 100 chrXV:854045-854310 4.92e-06 70_[+1(2.72e-10)]_11 chrVII:609548-609802 1.48e-01 100 chrIX:254315-254496 6.50e-02 100 chrXVI:210092-210438 7.56e-15 6_[-3(1.48e-18)]_65 chrX:233762-233862 3.32e-04 53_[+2(6.33e-08)]_27 chrII:680813-681142 8.75e-01 100 chrV:86417-86791 2.32e-06 55_[+2(2.03e-10)]_25 chrVIII:148202-148305 8.77e-01 100 chrX:204547-204647 2.58e-07 38_[+2(2.30e-06)]_16_[-1(5.64e-08)]_\ 7 chrV:139355-139466 7.98e-01 100 chrIII:142608-142941 3.02e-04 21_[-2(1.56e-07)]_59 chrXI:108827-109016 5.32e-01 100 chrX:414818-414918 9.51e-05 50_[+2(4.93e-08)]_30 chrXIII:362904-363264 7.44e-06 71_[-1(1.25e-07)]_10 chrV:269199-269603 7.91e-01 100 chrVII:400279-400683 9.81e-01 100 chrXII:232109-234094 5.63e-01 100 chrXI:326346-327478 5.55e-02 100 chrVII:611207-611351 9.90e-01 100 chrII:413971-414375 9.99e-01 100 chrXIV:61905-62309 3.03e-01 100 chrXV:438476-438869 3.23e-05 26_[+2(4.65e-09)]_54 chrXV:897546-897950 3.60e-01 100 chrXV:226495-226850 3.02e-04 33_[-2(1.56e-07)]_47 chrXVI:700002-700308 4.65e-01 100 chrIV:217652-218056 9.59e-01 100 chrIV:1095203-1095630 5.96e-08 14_[+1(1.72e-07)]_36_[-2(4.93e-08)]_\ 11 chrII:680310-680575 3.30e-01 100 chrXIV:63157-63427 7.46e-01 100 chrVII:148239-148416 7.20e-01 100 chrXIII:297015-298802 9.87e-01 100 chrXII:636898-638627 2.98e-02 100 chrXVI:406224-406501 1.70e-01 100 chrXIII:557531-557744 2.04e-01 100 chrXII:720704-721108 1.54e-01 100 chrVIII:148231-148635 1.38e-01 100 chrXIII:761806-762210 8.24e-01 100 chrXIII:504872-505124 3.33e-01 100 chrXII:837851-839187 4.19e-01 100 chrI:151482-151886 4.21e-01 100 chrVIII:75005-75316 4.79e-01 100 chrII:332942-333346 1.22e-01 100 chrI:142532-143149 1.84e-01 100 chrXIII:732097-732337 7.17e-01 100 chrXIV:88969-89674 7.77e-01 100 chrXV:80670-80820 5.68e-01 100 chrXIII:372340-372616 7.79e-10 27_[+1(2.26e-08)]_18_[-2(1.73e-07)]_\ 16 chrXV:29234-29819 1.12e-01 100 chrXV:113637-113967 4.22e-05 55_[+2(4.65e-09)]_25 chrXV:315831-316235 8.59e-01 100 chrIX:99002-99406 9.61e-01 100 chrXII:951257-951420 1.10e-01 100 chrIV:1305473-1305820 1.85e-06 39_[+2(2.03e-10)]_41 chrIV:1150707-1151095 3.71e-08 64_[-2(7.11e-11)]_16 chrX:75413-75513 3.03e-01 100 chrIX:24973-25377 4.23e-02 71_[-3(6.19e-05)] chrX:139335-139435 7.69e-01 100 chrVII:123699-124103 1.31e-01 100 chrXVI:644708-645112 1.56e-01 100 chrXII:806047-806861 2.40e-01 100 chrXI:382742-383146 2.15e-01 100 chrXV:620711-620940 3.71e-01 100 chrI:166136-166550 2.48e-06 16_[-1(2.72e-10)]_65 chrVII:930852-931184 3.02e-04 29_[-2(1.56e-07)]_51 chrXI:69820-70224 5.53e-01 100 chrVI:137327-137701 1.37e-08 32_[+1(1.35e-07)]_18_[-2(1.66e-08)]_\ 11 chrV:52704-52903 9.12e-01 100 chrII:9432-9735 8.27e-06 55_[+2(3.87e-09)]_25 chrII:236966-237370 9.01e-01 100 chrXI:46675-46967 1.71e-01 21_[+2(7.53e-05)]_59 chrVIII:555122-555526 1.60e-01 100 chrIII:107349-107624 9.71e-01 100 chrXII:721887-722291 8.17e-01 100 chrXII:713210-713515 9.71e-01 100 chrVI:64297-64478 6.85e-01 100 chrV:79083-79487 2.34e-01 100 chrXI:430870-431056 7.18e-01 100 chrXII:241687-241962 7.66e-01 100 chrIV:1017024-1017458 8.58e-20 26_[+1(1.18e-09)]_[-3(1.01e-17)]_26 chrX:704275-704375 4.00e-01 100 chrV:492239-492599 1.17e-04 29_[-2(6.33e-08)]_51 chrII:414633-415037 4.06e-01 100 chrXI:283572-283836 8.38e-01 100 chrII:614480-614884 8.65e-01 100 chrXVI:112974-113378 6.57e-01 100 chrIV:130126-130310 9.85e-01 100 chrXV:980556-980907 2.12e-08 7_[+2(2.70e-05)]_49_[-1(2.22e-09)]_\ 5 chrXVI:572128-572530 2.33e-06 30_[-1(4.76e-10)]_51 chrII:393179-393583 9.68e-01 100 chrV:307057-307161 6.75e-01 100 chrXII:341161-341565 7.36e-01 100 chrXI:578800-579304 8.59e-04 28_[-1(8.87e-08)]_25_[-1(1.31e-05)]_\ 9 chrIV:222022-222249 2.32e-02 46_[-3(6.94e-05)]_25 chrXII:952062-952466 7.97e-01 100 chrXII:242310-242714 9.92e-01 100 chrXI:335457-335861 3.36e-01 100 chrXIII:272293-272697 2.34e-02 1_[-1(9.88e-05)]_80 chrXII:797010-797367 1.54e-20 52_[+3(1.48e-18)]_[-1(1.18e-09)] chrXIII:463385-463801 5.63e-07 16_[+2(2.30e-06)]_16_[-1(5.64e-08)]_\ 29 chrIV:1300988-1301259 6.78e-01 100 chrXIV:104660-105040 7.70e-10 10_[+2(4.65e-09)]_17_[-1(3.44e-08)]_\ 34 chrIII:227778-228201 1.57e-07 8_[+2(3.29e-10)]_72 chrVII:479508-482724 1.81e-01 100 chrVIII:120262-120418 3.07e-01 100 chrXII:781505-781812 7.65e-01 100 chrXVI:104991-105395 4.78e-01 100 chrVII:561500-561752 9.65e-01 100 chrXV:505723-506127 9.87e-02 100 chrXIV:585660-586425 6.85e-01 100 chrVII:788377-788685 9.55e-01 100 chrXII:369563-370277 7.49e-01 100 chrXII:932134-932449 9.54e-01 100 chrXII:720910-721314 6.05e-01 100 chrIV:1359446-1359754 8.56e-01 100 chrII:82297-82701 8.45e-01 100 chrVII:438631-438862 4.70e-01 100 chrXII:282921-283617 6.14e-02 59_[-3(9.24e-05)]_12 chrII:592264-592668 5.95e-01 100 chrXII:263683-263918 4.70e-01 100 chrVI:210495-210873 1.87e-03 47_[-2(5.75e-07)]_33 chrVII:254172-254509 5.14e-01 100 chrX:123828-123928 2.97e-01 100 chrXVI:338751-339096 1.23e-01 100 chrIV:1489347-1489866 9.29e-01 100 chrVIII:62595-62923 4.95e-02 100 chrXII:522676-523080 8.63e-01 100 chrX:378204-378304 7.79e-10 40_[+2(1.73e-07)]_18_[-1(2.26e-08)]_\ 3 chrVII:148504-148678 3.48e-01 100 chrVIII:451301-452817 2.58e-02 100 chrII:332366-332695 5.82e-01 100 chrXII:1019043-1019318 6.64e-01 100 chrXV:274487-274900 8.04e-07 35_[+2(7.11e-11)]_45 chrIII:138439-138955 1.78e-01 100 chrV:250236-250494 5.71e-05 12_[-1(2.51e-08)]_69 chrVII:310885-312094 2.09e-02 100 chrXV:254400-254659 3.70e-01 100 chrI:71831-73269 2.86e-01 100 chrVII:412152-412534 7.79e-10 11_[+1(2.26e-08)]_18_[-2(1.73e-07)]_\ 32 chrV:131005-131331 9.33e-03 9_[-2(3.55e-06)]_71 chrX:652094-652194 6.03e-01 100 chrX:73717-73817 4.05e-01 100 chrXII:731967-732273 5.74e-06 25_[+2(1.23e-09)]_55 chrXV:867575-867979 9.57e-01 100 chrXIV:499812-500747 7.23e-01 100 chrXVI:435754-436139 6.23e-04 7_[+1(5.19e-07)]_74 chrV:117634-118256 8.36e-01 100 chrV:396262-396527 5.06e-01 100 chrXII:784175-784567 2.33e-08 38_[+2(7.11e-11)]_42 chrXIV:575307-575463 9.25e-01 100 chrII:405719-406157 6.40e-08 31_[-1(8.86e-09)]_27_[+2(2.30e-06)]_\ 3 chrXVI:303296-304036 2.36e-01 100 chrXV:842538-842942 3.08e-01 100 chrIV:117220-117540 5.04e-01 100 chrXIV:241474-241653 7.85e-02 100 chrII:613525-613929 2.91e-01 100 chrXII:1018300-1018511 7.79e-01 100 chrII:406631-407035 6.08e-01 100 chrXII:426956-427338 6.75e-07 40_[+2(2.30e-06)]_16_[-1(5.64e-08)]_\ 5 chrVII:677098-677502 5.74e-01 100 chrXIII:268013-268212 9.54e-01 100 chrXIII:420446-420827 7.79e-10 12_[+1(2.26e-08)]_18_[-2(1.73e-07)]_\ 31 chrII:256404-256556 7.66e-01 100 chrXV:505174-505447 5.44e-01 100 chrXV:678088-678199 9.81e-01 100 chrIV:980821-981191 1.73e-07 73_[-2(2.03e-10)]_7 chrI:182408-182634 6.25e-02 100 chrVIII:237734-238121 2.20e-04 36_[-2(4.93e-08)]_44 chrXIII:551397-551751 3.45e-01 100 chrXII:260032-260436 1.27e-01 100 chrXVI:403720-404124 5.34e-02 100 chrXI:517811-518132 2.32e-05 72_[+2(2.69e-09)]_8 chrIV:1410521-1410925 3.58e-01 100 chrXVI:795046-795450 8.60e-01 100 chrXIV:525029-525233 3.33e-01 100 chrXVI:378717-378912 3.09e-02 42_[+2(3.38e-05)]_38 chrXII:962857-963236 8.42e-06 33_[-2(3.87e-09)]_47 chrIV:1466236-1466640 6.31e-01 100 chrIX:248671-249025 3.06e-06 57_[+2(3.29e-10)]_23 chrXIII:251800-252204 6.15e-01 100 chrXIII:499389-499980 7.78e-01 100 chrXII:348327-348528 9.09e-01 100 chrVII:648085-648489 1.17e-01 100 chrXVI:173075-173774 7.69e-01 100 chrIX:316899-317056 7.04e-01 100 chrX:569935-570035 5.45e-01 100 chrXIII:195941-196321 1.24e-03 63_[-2(4.09e-07)]_17 chrXVI:560042-560464 2.62e-08 5_[+1(1.72e-07)]_36_[-2(4.93e-08)]_\ 20 chrXI:458436-458809 1.92e-01 100 chrXIII:379201-379574 2.38e-02 100 chrXII:449870-450274 9.06e-01 100 chrXVI:689395-689823 2.16e-07 11_[+2(3.29e-10)]_69 chrXII:628221-628622 2.76e-04 17_[+2(1.56e-07)]_63 chrXII:546965-547369 6.03e-01 100 chrXIV:331381-331785 9.89e-01 100 chrXIII:861103-861507 1.64e-01 100 chrVII:851085-851489 5.17e-01 100 chrII:410208-410612 9.72e-01 100 chrXII:92379-92769 1.24e-03 29_[+2(4.09e-07)]_51 chrVII:599446-599850 3.20e-01 100 chrXIV:722483-722887 7.27e-01 100 chrVI:82746-82925 9.16e-01 100 chrVI:226592-226912 5.99e-05 32_[-2(4.93e-08)]_48 chrXVI:404960-405732 7.36e-01 100 chrIV:519615-519933 2.37e-07 24_[+2(3.87e-09)]_56 chrVII:277749-278454 3.53e-01 100 chrVI:101201-101554 1.24e-03 54_[+2(4.09e-07)]_26 chrIX:84367-84771 8.95e-01 100 chrXVI:520233-520491 8.33e-01 100 chrVII:706947-707225 8.31e-02 100 chrXI:284219-284412 2.10e-02 52_[-2(6.73e-05)]_28 chrV:396825-397229 1.19e-01 100 chrVII:700483-701227 1.00e+00 100 chrXV:977812-978216 7.27e-01 100 chrXV:779757-780888 6.92e-01 100 chrVI:53292-53696 9.75e-01 100 chrXV:80841-81086 3.38e-01 100 chrXVI:377992-378396 4.71e-01 100 chrXII:515485-515649 3.39e-01 100 chrIV:619826-620207 6.28e-08 13_[+1(1.86e-07)]_17_[-2(6.33e-08)]_\ 31 chrXV:110824-111158 7.61e-12 31_[+1(2.99e-09)]_[-3(5.05e-07)]_21 chrXIV:652434-652838 8.78e-01 100 chrIV:1461570-1461872 2.77e-01 100 chrX:120546-120646 3.37e-01 100 chrV:194119-194523 8.19e-01 100 chrII:255270-255387 5.48e-01 100 chrV:302859-303263 7.36e-01 100 chrV:424759-424940 5.17e-02 100 chrII:299980-300384 7.26e-01 100 chrV:61173-62123 2.06e-01 100 chrXIII:19914-20083 6.94e-03 80_[+1(9.61e-05)]_1 chrV:469282-469613 5.31e-04 65_[+2(1.73e-07)]_15 chrIV:1355230-1355634 1.11e-01 100 chrVII:363315-363719 7.13e-01 100 chrIV:45638-46042 5.07e-01 100 chrXVI:75711-75981 6.91e-02 100 chrXV:882896-883300 3.44e-01 100 chrIV:645045-645379 2.59e-09 1_[+1(2.51e-08)]_16_[-2(3.55e-06)]_\ 44 chrIX:197420-197746 8.21e-14 71_[+3(1.01e-17)] chrXI:613208-613612 7.17e-02 100 chrXV:623979-624383 9.73e-01 100 chrII:88093-88496 7.43e-01 100 chrXIV:442838-443270 7.75e-04 7_[+2(1.56e-07)]_73 chrX:90753-90853 6.74e-01 100 chrVII:960864-961268 1.25e-01 100 chrVII:401437-401635 5.17e-20 51_[+1(1.18e-09)]_[-3(1.48e-18)]_1 chrXV:409524-409928 9.22e-01 100 chrVI:162066-162395 3.02e-04 53_[+2(1.56e-07)]_27 chrVII:316985-317167 4.97e-01 100 chrX:520946-521046 1.84e-01 100 chrXVI:769074-769490 3.23e-05 44_[-2(4.65e-09)]_36 chrVI:221831-221985 5.43e-01 100 chrIV:218365-218769 1.89e-01 100 chrV:431020-431523 1.33e-01 100 chrIV:926469-926873 1.63e-01 100 chrVII:611819-612223 8.75e-02 100 chrV:434416-434776 7.44e-06 5_[+1(1.25e-07)]_76 chrX:374177-374277 5.63e-07 22_[+1(5.64e-08)]_16_[-2(2.30e-06)]_\ 23 chrVI:157833-158170 5.86e-04 30_[-2(4.93e-08)]_50 chrVII:319720-319985 1.26e-04 20_[-1(1.25e-07)]_61 chrV:78155-78342 9.02e-01 100 chrXI:513244-513553 2.36e-03 29_[-2(2.30e-06)]_51 chrVII:661575-661921 7.00e-03 100 chrXIII:288306-288644 2.43e-01 100 chrXIV:568286-568532 4.15e-01 100 chrXV:710081-710357 2.60e-02 100 chrIV:915784-915990 4.28e-01 100 chrX:703313-703413 8.57e-01 100 chrII:642883-643252 6.23e-04 [+1(5.19e-07)]_81 chrXV:29234-29672 5.99e-02 100 chrXII:819989-820393 8.87e-01 100 chrX:577208-577308 3.41e-02 33_[-2(2.19e-05)]_47 chrVII:974835-975239 9.54e-01 100 chrIII:58177-58581 6.16e-01 100 chrXV:904817-905221 7.98e-01 100 chrVII:541670-542116 1.54e-20 19_[+3(1.48e-18)]_[-1(1.18e-09)]_33 chrXII:167855-168194 2.66e-06 25_[-2(2.03e-10)]_55 chrVIII:34617-35164 1.41e-01 100 chrIV:488508-489063 2.94e-05 72_[+1(2.51e-08)]_9 chrIV:768556-768960 8.98e-01 100 chrX:422783-422883 2.31e-07 44_[+2(3.74e-07)]_17_[-1(3.78e-07)] chrXII:794566-795232 8.06e-01 100 chrVII:786955-787359 1.64e-01 100 chrX:622573-622673 1.39e-01 100 chrXII:930952-931356 8.54e-01 100 chrIV:601310-601574 5.35e-01 100 chrVII:365652-365761 5.48e-01 100 chrXVI:112831-112954 1.43e-01 100 chrV:78947-79144 1.80e-01 100 chrIV:116410-116814 1.33e-02 100 chrX:517669-517769 2.60e-02 100 chrIX:183310-183681 9.64e-12 5_[+1(1.39e-09)]_18_[-2(2.28e-09)]_\ 38 chrXIV:518990-519173 3.32e-04 78_[+1(5.64e-08)]_3 chrVII:845482-845913 8.35e-11 7_[+2(1.56e-07)]_15_[-1(4.76e-10)]_\ 39 chrXV:288033-288408 3.19e-07 27_[+2(5.75e-07)]_33_[-1(5.51e-07)]_\ 1 chrXVI:731969-732257 2.94e-01 100 chrXV:232682-233086 8.29e-01 100 chrIV:1239565-1239772 2.40e-01 100 chrXIII:67571-67975 2.91e-01 100 chrIV:1075330-1075715 2.51e-16 10_[+1(1.39e-09)]_1_[-3(4.93e-13)]_\ 41 chrXII:374188-374586 3.48e-08 23_[+2(6.33e-08)]_17_[-1(1.86e-07)]_\ 21 chrVII:774180-774550 2.02e-11 39_[+2(2.69e-09)]_17_[-1(2.59e-09)]_\ 5 chrI:131491-131895 1.45e-01 100 chrXV:841619-842023 8.65e-01 100 chrV:176926-177402 1.18e-05 26_[-1(1.18e-09)]_55 chrIV:914338-914551 4.86e-01 100 chrII:301266-301381 7.32e-01 100 chrVIII:146053-146446 3.43e-05 53_[+1(2.59e-09)]_28 chrXIII:484282-484686 5.24e-01 100 chrXIV:663051-663455 9.09e-01 100 chrVII:185584-185926 6.75e-10 19_[+1(3.42e-09)]_17_[-2(4.93e-08)]_\ 25 chrVII:960323-960467 1.43e-01 100 chrIV:410218-410584 2.02e-11 33_[+2(2.69e-09)]_17_[-1(2.59e-09)]_\ 11 chrXVI:821651-822075 1.51e-01 100 chrVII:557008-557412 3.59e-01 100 chrXIV:495248-495544 9.68e-01 100 chrXV:30071-30253 6.02e-01 100 chrVII:845482-845915 8.35e-11 6_[+2(1.56e-07)]_15_[-1(4.76e-10)]_\ 40 chrIX:324170-324399 9.10e-05 79_[+1(5.64e-08)]_2 chrX:355200-355300 6.40e-08 9_[-1(8.86e-09)]_27_[+2(2.30e-06)]_\ 25 chrIV:331087-331491 9.79e-01 100 chrIV:520799-521146 2.38e-05 55_[+2(3.55e-06)]_25 chrIV:44248-44367 2.54e-01 100 chrXII:499012-499654 7.54e-02 100 chrVII:405407-405694 1.63e-05 11_[-1(8.86e-09)]_70 chrXV:411175-411579 6.69e-02 75_[-1(3.50e-05)]_6 chrXIV:374711-375081 6.02e-05 28_[+2(4.93e-08)]_52 chrXIII:480481-480851 6.75e-10 15_[+1(3.42e-09)]_17_[-2(4.93e-08)]_\ 29 chrXVI:280545-281496 4.85e-02 32_[+1(9.09e-05)]_49 chrXII:951397-951563 7.16e-02 25_[-2(3.38e-05)]_55 chrXII:214756-215105 9.13e-13 13_[+1(2.72e-10)]_17_[-2(3.87e-09)]_\ 31 chrVII:787695-788099 4.27e-01 100 chrVI:224175-224579 1.99e-01 100 chrII:60927-61197 1.50e-01 100 chrVI:180784-181207 3.49e-10 39_[+1(4.76e-10)]_15_[-2(1.56e-07)]_\ 7 chrXIII:499919-500733 4.40e-01 100 chrVIII:115972-116352 7.70e-10 5_[+1(3.44e-08)]_17_[-2(4.65e-09)]_\ 39 chrXV:841978-842084 1.31e-01 100 chrI:78647-79051 8.49e-01 100 chrXIII:259034-259393 1.73e-07 50_[-2(2.03e-10)]_30 chrVIII:381473-381908 9.38e-01 100 chrIV:437618-437962 2.97e-06 37_[+2(2.03e-10)]_43 chrXV:282001-282347 3.49e-10 45_[+2(1.56e-07)]_15_[-1(4.76e-10)]_\ 1 chrXVI:76399-76691 7.17e-01 100 chrXII:592413-592770 5.74e-06 52_[-2(1.23e-09)]_28 chrX:76309-76409 3.38e-01 100 chrVIII:362191-362595 3.12e-01 100 chrIII:162718-163122 2.61e-01 100 chrXII:796467-796798 4.79e-01 100 chrXIV:302689-303427 5.12e-03 6_[+3(2.24e-05)]_65 chrVII:364138-364542 5.77e-01 100 chrXIII:290627-290997 1.54e-20 51_[+3(1.48e-18)]_[-1(1.18e-09)]_1 chrX:466635-466735 9.84e-01 100 chrXI:615870-616274 2.12e-01 100 chrXII:198773-199597 2.26e-01 100 chrIV:434077-434452 2.24e-04 60_[+1(3.44e-08)]_21 chrXVI:622403-622816 7.72e-05 46_[-2(4.93e-08)]_34 chrXI:140858-141258 1.54e-20 20_[+1(1.18e-09)]_[-3(1.48e-18)]_32 chrVII:366129-366449 4.10e-01 100 chrVII:277114-277328 5.17e-01 100 chrVI:167308-167663 1.49e-06 7_[+2(5.75e-07)]_33_[-1(5.51e-07)]_\ 21 chrX:608541-608641 2.25e-01 100 chrXIV:632452-632807 1.37e-08 25_[+2(1.66e-08)]_18_[-1(1.35e-07)]_\ 18 chrVII:366439-366626 8.34e-01 100 chrII:168551-168955 7.79e-01 100 chrXI:334317-334854 6.42e-01 100 chrVII:806950-807266 4.30e-01 100 chrXVI:55878-56436 3.37e-04 72_[+1(1.35e-07)]_9 chrVII:794266-794599 9.13e-13 40_[+2(3.87e-09)]_17_[-1(2.72e-10)]_\ 4 chrVIII:126592-126996 9.23e-01 100 chrII:266224-266634 7.70e-10 4_[+2(4.65e-09)]_17_[-1(3.44e-08)]_\ 40 chrV:135279-135644 6.75e-10 24_[+1(3.42e-09)]_17_[-2(4.93e-08)]_\ 20 chrIII:214228-214632 5.36e-01 100 chrVII:115332-115683 3.23e-05 36_[+2(4.65e-09)]_44 chrII:477072-477406 9.40e-01 100 chrXII:656799-657166 2.02e-11 12_[+1(2.59e-09)]_17_[-2(2.69e-09)]_\ 32 chrVII:534040-534153 8.67e-01 100 chrXII:951960-952161 2.55e-01 100 chrXIII:163843-164046 7.29e-01 100 chrXV:968352-968756 1.75e-02 3_[+3(5.53e-05)]_68 chrVII:440525-440995 2.62e-08 16_[+1(1.72e-07)]_36_[-2(4.93e-08)]_\ 9 chrIV:555777-556211 1.55e-02 52_[+2(6.01e-05)]_28 chrI:82026-82151 1.78e-01 100 chrVII:907013-907417 2.71e-01 100 chrI:138996-139359 1.24e-03 30_[+2(4.09e-07)]_50 chrVII:801342-801746 1.28e-01 100 chrXIV:577272-577375 7.21e-01 100 chrXV:571801-572143 3.15e-07 41_[+2(2.30e-06)]_16_[-1(5.64e-08)]_\ 4 chrXV:866619-866893 4.44e-01 100 chrV:301680-302084 5.90e-01 100 chrXV:594251-594589 1.26e-03 29_[-2(5.75e-07)]_51 chrXV:444677-445951 9.74e-01 100 chrXI:38650-39054 3.58e-01 100 chrXV:619785-620189 1.68e-01 100 chrIX:370235-370624 1.54e-20 50_[+3(1.48e-18)]_[-1(1.18e-09)]_2 chrIV:1352277-1352674 3.22e-06 51_[+1(3.42e-09)]_30 chrX:227805-227905 7.90e-01 100 chrXVI:880162-880542 9.64e-12 4_[+1(1.39e-09)]_18_[-2(2.28e-09)]_\ 39 chrXII:459511-460092 6.20e-01 100 chrXVI:700506-700731 6.69e-01 100 chrIV:992683-993033 3.49e-10 29_[+2(1.56e-07)]_15_[-1(4.76e-10)]_\ 17 chrII:237783-238187 3.65e-01 100 chrXIV:96081-96485 7.61e-12 18_[+1(2.99e-09)]_[-3(5.05e-07)]_34 chrXIV:253172-253576 1.91e-03 48_[-1(2.63e-06)]_33 chrXIV:186975-187379 1.51e-02 32_[+1(7.41e-05)]_49 chrXIII:353013-353417 2.01e-02 58_[+1(9.88e-05)]_23 chrXII:448524-448885 2.59e-09 6_[+1(2.51e-08)]_16_[-2(3.55e-06)]_\ 39 chrXIII:289277-289681 6.31e-01 100 chrII:592933-593238 4.95e-01 100 chrXI:308027-308380 7.79e-10 1_[+1(2.26e-08)]_18_[-2(1.73e-07)]_\ 42 chrXVI:454490-454894 3.37e-01 100 chrXI:159056-159180 8.48e-01 100 chrXVI:744117-744499 8.08e-06 67_[-1(2.68e-07)]_14 chrVIII:505048-505452 7.80e-01 100 chrIII:223613-224017 2.05e-01 100 chrIX:257421-257825 2.81e-01 100 chrIII:241744-242148 1.60e-01 100 chrXII:952776-952980 5.79e-01 100 chrVII:544445-544828 4.01e-07 1_[+1(5.64e-08)]_16_[-2(2.30e-06)]_\ 44 chrXV:228160-228536 1.78e-08 38_[+2(1.66e-08)]_18_[-1(1.35e-07)]_\ 5 chrVII:328425-328870 5.51e-06 27_[-1(1.18e-09)]_54 chrIV:239048-239452 9.94e-01 100 chrXV:216311-216642 6.81e-01 100 chrIX:317296-317510 8.25e-01 100 chrXV:93002-93276 1.63e-02 2_[+1(1.36e-05)]_79 chrVII:729177-729581 5.41e-01 100 chrXI:558966-559077 4.46e-01 100 chrIV:1163476-1163880 3.00e-01 100 chrIV:884214-884595 3.67e-05 12_[+2(2.56e-08)]_68 chrIV:359404-359788 3.23e-05 36_[+2(4.65e-09)]_44 chrVII:883458-883827 5.18e-01 100 chrIV:1270062-1270360 1.61e-01 100 chrXII:793742-794216 2.73e-04 30_[-1(5.64e-08)]_51 chrXII:875215-875601 3.23e-05 23_[+2(4.65e-09)]_57 chrVII:149167-149483 5.75e-01 100 chrXV:797950-798354 2.36e-02 100 chrVII:878579-878986 4.61e-02 100 chrX:59032-59132 2.46e-05 22_[-2(4.65e-09)]_58 chrXIII:511255-511659 2.10e-01 100 chrVII:422915-423317 7.75e-04 31_[+2(1.56e-07)]_49 chrII:88997-89401 9.46e-01 100 chrVII:122115-122492 6.75e-10 21_[+2(4.93e-08)]_17_[-1(3.42e-09)]_\ 23 chrVII:439331-439613 4.97e-01 100 chrXVI:433827-433989 1.66e-03 67_[+2(4.11e-06)]_13 chrXIV:631723-632077 1.04e-09 6_[+1(3.25e-11)]_16_[-2(4.52e-06)]_\ 39 chrXV:87477-87881 6.84e-01 100 chrVIII:388779-389028 2.99e-05 50_[+1(2.22e-09)]_31 chrV:85614-86441 7.82e-01 100 chrVI:225546-225950 7.85e-01 100 chrX:526303-526403 5.57e-01 100 chrXV:897295-897699 2.33e-01 100 chrXVI:134998-135402 7.22e-01 100 chrXVI:718517-719167 9.77e-01 100 chrVII:287210-287617 4.61e-02 100 chrXV:300932-301336 1.24e-03 18_[+2(4.09e-07)]_62 chrXI:261319-261772 1.87e-01 100 chrIII:149754-150107 2.60e-02 100 chrVI:224415-224819 9.97e-01 100 chrIV:1256909-1257260 1.30e-03 19_[-2(5.75e-07)]_61 chrXVI:109329-109733 8.85e-01 100 chrXV:159439-160181 4.33e-01 100 chrXV:622407-622811 4.60e-01 100 chrXIV:252178-252582 3.75e-01 100 chrX:538409-538509 1.91e-06 78_[-1(5.12e-08)]_3 chrVII:437332-437736 7.87e-02 100 chrII:347430-347798 3.84e-06 44_[+2(3.87e-09)]_36 chrXIII:651383-651787 7.98e-01 100 chrIII:168192-168547 1.05e-04 27_[-2(3.55e-06)]_53 chrXII:1028309-1028514 4.09e-01 100 chrX:354069-354169 2.76e-03 51_[+2(5.75e-07)]_29 chrVII:1004079-1004400 8.08e-06 68_[-1(2.68e-07)]_13 chrXIII:246182-246586 1.69e-01 100 chrII:45823-45970 9.85e-01 100 chrXI:432005-432147 5.49e-02 100 chrXII:639401-639864 3.61e-01 100 chrIV:117794-118198 6.72e-01 100 chrXII:1029203-1029607 3.46e-01 100 chrXIII:552598-553002 1.62e-01 100 chrXIII:123313-123717 8.56e-01 100 chrXII:899296-899516 7.22e-01 100 chrXVI:282155-282559 8.20e-01 100 chrXV:353903-354293 7.70e-10 3_[+1(3.44e-08)]_17_[-2(4.65e-09)]_\ 41 chrV:435652-435983 1.13e-04 31_[-2(4.93e-08)]_49 chrVII:730968-731331 8.84e-09 43_[+2(1.66e-08)]_18_[-1(1.35e-07)] chrVII:110381-110824 5.96e-01 100 chrXIV:174208-174384 7.85e-01 100 chrXIV:413920-414128 6.23e-01 100 chrVIII:134187-134522 2.59e-09 22_[+2(3.55e-06)]_16_[-1(2.51e-08)]_\ 23 chrXIII:747761-748141 1.83e-06 1_[+1(8.86e-09)]_80 chrXIV:108629-109033 1.29e-01 100 chrXI:162283-162719 5.85e-05 46_[+1(8.86e-09)]_35 chrVII:857254-857649 7.75e-04 64_[-2(1.56e-07)]_16 chrIV:835817-836115 8.51e-01 100 chrIV:323052-323338 9.22e-01 100 chrXIII:91860-92084 2.59e-01 100 chrVI:95520-95775 1.80e-01 100 chrXIV:230279-230534 3.94e-01 100 chrVIII:75625-75937 3.41e-02 100 chrIV:230256-230467 5.61e-01 100 chrII:392945-393349 3.66e-01 100 chrXVI:810544-810838 5.00e-09 40_[+2(1.66e-08)]_18_[-1(1.35e-07)]_\ 3 chrIV:1175708-1176042 2.31e-07 9_[+2(3.74e-07)]_17_[-1(3.78e-07)]_\ 35 chrVII:556193-556597 4.59e-01 100 chrII:605772-606100 1.64e-01 100 chrXIII:123112-123516 7.89e-01 100 chrVI:221133-221537 1.46e-01 100 chrXV:340142-340542 3.48e-08 17_[+1(1.86e-07)]_17_[-2(6.33e-08)]_\ 27 chrXII:281909-282313 1.80e-01 100 chrXI:109400-109804 5.36e-01 100 chrV:441833-442613 5.29e-01 100 chrX:541389-541489 5.63e-07 26_[+2(2.30e-06)]_16_[-1(5.64e-08)]_\ 19 chrVII:823312-823697 7.79e-10 33_[+2(1.73e-07)]_18_[-1(2.26e-08)]_\ 10 chrV:138486-138877 1.83e-06 76_[-1(8.86e-09)]_5 chrVIII:382959-383289 8.99e-01 100 chrXIII:626390-626757 6.66e-01 100 chrXII:47979-48151 5.56e-01 100 chrIX:214193-214597 4.75e-01 100 chrX:172733-172833 6.72e-01 100 chrX:115805-115905 1.54e-20 2_[+1(1.18e-09)]_[-3(1.48e-18)]_50 chrXIII:754515-754639 5.25e-01 100 chrVIII:149025-149170 1.09e-01 100 chrXIII:352105-352467 1.87e-04 49_[+2(4.93e-08)]_31 chrIII:163515-163824 5.47e-01 100 chrVIII:125967-126250 8.62e-01 100 chrXIV:569769-570028 9.64e-12 29_[+1(1.39e-09)]_18_[-2(2.28e-09)]_\ 14 chrX:531660-531760 8.74e-01 100 chrVIII:487729-488133 7.44e-01 100 chrXIV:102560-102971 1.75e-08 6_[+2(1.66e-08)]_18_[-1(1.35e-07)]_\ 37 chrX:617735-617835 1.49e-05 56_[+2(1.23e-09)]_24 chrXIV:24018-24422 6.89e-01 100 chrVIII:132905-133108 3.45e-01 100 chrXIII:352776-353180 4.93e-01 100 chrVII:545455-545859 9.76e-01 100 chrXII:712414-712818 9.52e-01 100 chrV:400320-400724 9.10e-01 100 chrXIII:288560-288769 9.45e-01 100 chrIV:355737-356044 1.57e-01 100 chrII:165137-165375 3.13e-01 100 chrXII:825875-826279 2.37e-01 100 chrXIV:546606-546766 5.65e-01 100 chrVII:738950-739323 9.64e-12 41_[+2(2.28e-09)]_18_[-1(1.39e-09)]_\ 2 chrXVI:694490-694894 1.60e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************