Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.07221
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.06428
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.084924
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.027153
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.082998
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background
Finished invoke:
  name: bg  status: 0  time: 0.0219
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 926.651229
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 62.850357
Invoking:
  centrimo -seqlen 350 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.244519
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.246279
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background -primary DKRAGRTCMBSGGTTCGAYYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.471995
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background -primary DTRGYBYAGTGGKT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.653226
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background -primary RATGTAYGGRTGTWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.385845
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background -primary TAAGGCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.348596
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.263409
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.292072
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background -primary TTGGGCB /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.283365
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background -primary AARAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.344174
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background -primary GAMTTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.263922
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background -primary AAGAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.370249
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background -primary GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.289073
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background -primary CGTGGMG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.290005
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background -primary ACTGAGCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.218898
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background --motif DKRAGRTCMBSGGTTCGAYYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.23384
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background --motif DTRGYBYAGTGGKT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.238013
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background --motif RATGTAYGGRTGTWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.22949
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background --motif TAAGGCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.132576
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.130428
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.116506
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background --motif TTGGGCB /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.134956
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background --motif AARAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.104731
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background --motif GAMTTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.127577
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background --motif AAGAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.10247
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background --motif GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.136917
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background --motif CGTGGMG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.124294
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/background --motif ACTGAGCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/RM11-1A--CUP2.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.115947
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CUP2/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.18754
Done