Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.077383
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.067408
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.092141
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.035516
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.082198
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background
Finished invoke:
  name: bg  status: 0  time: 0.025988
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 928.850059
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 77.230954
Invoking:
  centrimo -seqlen 344 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.214254
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.398792
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background -primary WWWGSBYNBDTGGCBBAGTKGKTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.439045
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background -primary RKRAGRTCMBSGGTTCGAYYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.385033
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background -primary TTWACAYCCRTACATY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.320057
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background -primary BTAAGGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.227325
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background -primary CGCKCTAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.235254
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background -primary AAGAMAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.227566
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background -primary GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.24624
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background -primary GAASTCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.232524
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background -primary GTWGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.270225
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background -primary CCGTGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.236765
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background -primary AYCAGAAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.240531
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background -primary SCGCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.224995
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background -primary GARTCATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.226509
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background -primary ACACTATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.239415
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background -primary ACGCGRG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.431987
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background -primary AAAGCGTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo16  status: 0  time: 0.265652
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background --motif WWWGSBYNBDTGGCBBAGTKGKTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.226488
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background --motif RKRAGRTCMBSGGTTCGAYYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.25029
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background --motif TTWACAYCCRTACATY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.227461
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background --motif BTAAGGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.123639
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background --motif CGCKCTAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.138482
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background --motif AAGAMAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.116448
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background --motif GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.117826
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background --motif GAASTCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.117685
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background --motif GTWGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.119422
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background --motif CCGTGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.123398
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background --motif AYCAGAAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.133823
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background --motif SCGCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.112924
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background --motif GARTCATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.126578
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background --motif ACACTATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.121517
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background --motif ACGCGRG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.119656
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/background --motif AAAGCGTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/RM11-1A--CIN5.fa
Finished invoke:
  name: fimo16  status: 0  time: 0.135781
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CIN5/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.21516
Done