Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.033817 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.062238 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.07592 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.026989 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background Finished invoke: name: bg status: 0 time: 0.023379 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 528.738721 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 58.504576 Invoking: centrimo -seqlen 336 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.212202 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.388264 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background -primary BDTGGCBYAGTKGKTWRRGSSNNC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.417882 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background -primary RAGRTCMBSGGTTCGAYYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.318868 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background -primary RRATGTAYGGRTGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.323324 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background -primary CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.241222 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background -primary CCAACTK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.223834 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.240745 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background -primary CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.240095 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background -primary CGGTAGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.218344 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background -primary AKCGTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.214944 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background -primary CGTGGMG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.259475 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background -primary SAAGAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.217745 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background -primary CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.233008 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background -primary AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.210798 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background -primary CGTGYTAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.196004 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background -primary CTTGTTRG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.215423 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background -primary GCSACAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.203827 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background -primary TAAKCGCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 0.201417 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/spamo_out_18 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background -primary AATCTTYT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml Finished invoke: name: spamo18 status: 0 time: 0.225835 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background --motif BDTGGCBYAGTKGKTWRRGSSNNC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa Finished invoke: name: fimo1 status: 0 time: 0.21256 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background --motif RAGRTCMBSGGTTCGAYYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa Finished invoke: name: fimo2 status: 0 time: 0.200043 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background --motif RRATGTAYGGRTGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa Finished invoke: name: fimo3 status: 0 time: 0.202365 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background --motif CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa Finished invoke: name: fimo4 status: 0 time: 0.103407 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background --motif CCAACTK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa Finished invoke: name: fimo5 status: 0 time: 0.111596 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa Finished invoke: name: fimo6 status: 0 time: 0.115326 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background --motif CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa Finished invoke: name: fimo7 status: 0 time: 0.095399 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background --motif CGGTAGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa Finished invoke: name: fimo8 status: 0 time: 0.104765 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background --motif AKCGTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa Finished invoke: name: fimo9 status: 0 time: 0.090803 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background --motif CGTGGMG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa Finished invoke: name: fimo10 status: 0 time: 0.107953 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background --motif SAAGAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa Finished invoke: name: fimo11 status: 0 time: 0.085531 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background --motif CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa Finished invoke: name: fimo12 status: 0 time: 0.104138 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background --motif AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa Finished invoke: name: fimo13 status: 0 time: 0.100128 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background --motif CGTGYTAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa Finished invoke: name: fimo14 status: 0 time: 0.107769 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background --motif CTTGTTRG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa Finished invoke: name: fimo15 status: 0 time: 0.098334 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background --motif GCSACAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa Finished invoke: name: fimo16 status: 0 time: 0.104817 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background --motif TAAKCGCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa Finished invoke: name: fimo17 status: 0 time: 0.109287 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/fimo_out_18 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/background --motif AATCTTYT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/RM11-1A--CAD1.fa Finished invoke: name: fimo18 status: 0 time: 0.11322 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--CAD1/summary.tsv Finished invoke: name: summary status: 0 time: 0.241139 Done