Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.01172 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.055379 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.069602 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.012301 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background Finished invoke: name: bg status: 0 time: 0.009403 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 544.659288 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 62.12278 Invoking: centrimo -seqlen 344 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.192435 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.331041 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background -primary YYWAMCCACTRVGCCAHVNR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.458995 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background -primary RRGRTCMBSGGTTCGATYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.379344 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background -primary DRATGTAYGGRTGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.33489 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background -primary TAAGGCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.255692 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.230614 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background -primary CDCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.254536 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background -primary GGTCTCY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.219159 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background -primary AAAAAAAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.216445 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background -primary CACATYAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.234416 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background -primary CAASGATG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.203157 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background -primary ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.24378 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background -primary AGMAGAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.219472 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background -primary AGATCGKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.20917 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background -primary CACGGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.22051 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background -primary AGARTCAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.222149 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background --motif YYWAMCCACTRVGCCAHVNR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa Finished invoke: name: fimo1 status: 0 time: 0.17956 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background --motif RRGRTCMBSGGTTCGATYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa Finished invoke: name: fimo2 status: 0 time: 0.180024 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background --motif DRATGTAYGGRTGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa Finished invoke: name: fimo3 status: 0 time: 0.175681 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background --motif TAAGGCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa Finished invoke: name: fimo4 status: 0 time: 0.084432 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa Finished invoke: name: fimo5 status: 0 time: 0.084927 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background --motif CDCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa Finished invoke: name: fimo6 status: 0 time: 0.068722 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background --motif GGTCTCY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa Finished invoke: name: fimo7 status: 0 time: 0.102903 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background --motif AAAAAAAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa Finished invoke: name: fimo8 status: 0 time: 0.088029 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background --motif CACATYAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa Finished invoke: name: fimo9 status: 0 time: 0.107319 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background --motif CAASGATG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa Finished invoke: name: fimo10 status: 0 time: 0.083773 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background --motif ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa Finished invoke: name: fimo11 status: 0 time: 0.085781 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background --motif AGMAGAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa Finished invoke: name: fimo12 status: 0 time: 0.08344 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background --motif AGATCGKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa Finished invoke: name: fimo13 status: 0 time: 0.086705 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background --motif CACGGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa Finished invoke: name: fimo14 status: 0 time: 0.070709 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/background --motif AGARTCAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/RM11-1A--ARR1.fa Finished invoke: name: fimo15 status: 0 time: 0.085586 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--ARR1/summary.tsv Finished invoke: name: summary status: 0 time: 0.159278 Done