Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.027697 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.064359 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.06809 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.026534 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.074464 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background Finished invoke: name: bg status: 0 time: 0.011463 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 928.428228 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 74.875865 Invoking: centrimo -seqlen 356 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.215249 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.36474 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background -primary RAGRTCMBSGGTTCGAYYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.474543 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background -primary SYKYTAMCCACTRVRCYAHVNV /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.559777 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background -primary WTWWACAYCCRTACAYY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.389408 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background -primary CAACTKGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.249325 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.266073 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background -primary SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.366234 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background -primary CGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.286403 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background -primary GGAGASC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.473309 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background -primary CGTTGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.255224 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background -primary CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.247263 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background -primary CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.537958 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background -primary MACTATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.244565 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background -primary CTGAGCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.22242 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background -primary AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.461054 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background -primary CGCGGGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.259596 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background -primary ARGAAATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.237712 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background --motif RAGRTCMBSGGTTCGAYYCCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa Finished invoke: name: fimo1 status: 0 time: 0.240637 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background --motif SYKYTAMCCACTRVRCYAHVNV /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa Finished invoke: name: fimo2 status: 0 time: 0.230849 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background --motif WTWWACAYCCRTACAYY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa Finished invoke: name: fimo3 status: 0 time: 0.237522 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background --motif CAACTKGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa Finished invoke: name: fimo4 status: 0 time: 0.109311 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa Finished invoke: name: fimo5 status: 0 time: 0.346783 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background --motif SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa Finished invoke: name: fimo6 status: 0 time: 0.126493 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background --motif CGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa Finished invoke: name: fimo7 status: 0 time: 0.14019 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background --motif GGAGASC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa Finished invoke: name: fimo8 status: 0 time: 0.132809 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background --motif CGTTGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa Finished invoke: name: fimo9 status: 0 time: 0.139043 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background --motif CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa Finished invoke: name: fimo10 status: 0 time: 0.100387 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background --motif CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa Finished invoke: name: fimo11 status: 0 time: 0.09426 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background --motif MACTATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa Finished invoke: name: fimo12 status: 0 time: 0.115746 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background --motif CTGAGCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa Finished invoke: name: fimo13 status: 0 time: 0.122131 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background --motif AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa Finished invoke: name: fimo14 status: 0 time: 0.148939 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background --motif CGCGGGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa Finished invoke: name: fimo15 status: 0 time: 0.137364 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/background --motif ARGAAATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/RM11-1A--AFT1.fa Finished invoke: name: fimo16 status: 0 time: 0.113544 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/RM11-1A--AFT1/summary.tsv Finished invoke: name: summary status: 0 time: 0.210597 Done