Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.064971
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.063378
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.293331
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.028703
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background
Finished invoke:
  name: bg  status: 0  time: 0.0172
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 763.805548
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 64.836758
Invoking:
  centrimo -seqlen 324 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.228304
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.444779
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background -primary NSSCYYTAMCMACTRVGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.630268
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background -primary HACAYCCRTACAYYHY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.357636
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background -primary TGTTGTATYTCARRATSRRRTAMKTCM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.304461
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background -primary BTAAGGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.215976
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.224959
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background -primary ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.239396
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background -primary TAKCTCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.220792
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background -primary CTKGCGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.231455
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background -primary AGAARA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.252177
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background -primary SGGTTCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.254139
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.252632
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background -primary GTGGTTAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.216558
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background -primary GTATKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.221756
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background -primary CCCATKC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.231776
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background --motif NSSCYYTAMCMACTRVGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.446003
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background --motif HACAYCCRTACAYYHY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.443797
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background --motif TGTTGTATYTCARRATSRRRTAMKTCM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.206775
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background --motif BTAAGGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.128178
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.115343
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background --motif ATAGTKTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.107505
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background --motif TAKCTCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.106281
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background --motif CTKGCGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.13084
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background --motif AGAARA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.08057
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background --motif SGGTTCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.336311
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.100299
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background --motif GTGGTTAK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.101885
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background --motif GTATKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.101483
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/background --motif CCCATKC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/BY4742--YKL222C.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.331639
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--YKL222C/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.196747
Done