Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.039561
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.06568
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.099568
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.032085
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.078353
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background
Finished invoke:
  name: bg  status: 0  time: 0.031318
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 636.32475
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 116.74902
Invoking:
  centrimo -seqlen 644 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.1841
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.642528
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -primary GKTARSGCGTCTGACTMNTAATCAGAAGRT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.299155
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -primary GDHGSCTTWAACCACTMRRCCAHNNRVSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.336156
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -primary ACAYCCRTACATH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.411301
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -primary TCTTCW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.712087
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -primary CCATBG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.606893
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -primary CGGTR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.661039
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -primary BTTGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.73245
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -primary TMAACAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.494765
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -primary GATTCYA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.35506
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -primary AAGGYTGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.251822
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -primary GGSTTCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.212631
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -primary ATTDGCTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.236104
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -primary GMAGTTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.256328
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -primary TGGTATGR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.264899
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -primary TAAKAGCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.222187
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -primary GAACCAS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo16  status: 0  time: 0.364014
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -primary CATCTRC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo17  status: 0  time: 0.306844
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/spamo_out_18 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -primary CGCTAGW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml
Finished invoke:
  name: spamo18  status: 0  time: 0.232497
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background --motif GKTARSGCGTCTGACTMNTAATCAGAAGRT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.664484
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background --motif GDHGSCTTWAACCACTMRRCCAHNNRVSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.648128
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background --motif ACAYCCRTACATH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.561155
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background --motif TCTTCW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.477594
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background --motif CCATBG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.477617
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background --motif CGGTR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.472272
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background --motif BTTGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.481147
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background --motif TMAACAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.501277
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background --motif GATTCYA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.496322
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background --motif AAGGYTGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.52462
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background --motif GGSTTCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.510944
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background --motif ATTDGCTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.515215
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background --motif GMAGTTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.529798
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background --motif TGGTATGR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.516765
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background --motif TAAKAGCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.50718
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background --motif GAACCAS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo16  status: 0  time: 0.506235
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background --motif CATCTRC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo17  status: 0  time: 0.502959
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/fimo_out_18 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background --motif CGCTAGW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/BY4742--THP2.fa
Finished invoke:
  name: fimo18  status: 0  time: 0.491153
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.177886
Done