******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrXIII:23682-25814 1.0000 100 chrVIII:372537-373375 1.0000 100 chrXVI:811790-812434 1.0000 100 chrVIII:161604-162727 1.0000 100 chrIV:1170111-1170361 1.0000 100 chrXV:167961-168450 1.0000 100 chrVII:779406-779832 1.0000 100 chrIX:25427-28589 1.0000 100 chrIV:181007-181928 1.0000 100 chrXV:308774-309167 1.0000 100 chrXIII:887249-889345 1.0000 100 chrXVI:692710-693364 1.0000 100 chrXII:201685-202508 1.0000 100 chrIV:341244-341655 1.0000 100 chrVII:825516-827115 1.0000 100 chrVI:221726-222113 1.0000 100 chrX:139131-139231 1.0000 100 chrIV:886163-886807 1.0000 100 chrIV:946068-946567 1.0000 100 chrXVI:188596-188961 1.0000 100 chrIV:116678-117610 1.0000 100 chrIV:381905-382369 1.0000 100 chrXIV:173927-174319 1.0000 100 chrXII:930637-931148 1.0000 100 chrXV:81372-82773 1.0000 100 chrXII:263435-264079 1.0000 100 chrXV:29181-33749 1.0000 100 chrIV:1236587-1238459 1.0000 100 chrXIV:61744-62388 1.0000 100 chrVIII:237630-238118 1.0000 100 chrXII:810638-815988 1.0000 100 chrXIII:5228-5897 1.0000 100 chrXII:636798-640300 1.0000 100 chrXVI:577231-579459 1.0000 100 chrIII:168173-168620 1.0000 100 chrXI:109664-110308 1.0000 100 chrXVI:404992-405673 1.0000 100 chrXV:778612-779256 1.0000 100 chrXV:305253-305675 1.0000 100 chrIX:23456-25478 1.0000 100 chrXV:723582-725126 1.0000 100 chrXVI:819306-819877 1.0000 100 chrIX:296117-296312 1.0000 100 chrVII:341171-341388 1.0000 100 chrIV:742137-742781 1.0000 100 chrV:78222-79727 1.0000 100 chrXII:951299-953627 1.0000 100 chrXIII:699882-700228 1.0000 100 chrXIII:698716-698956 1.0000 100 chrVII:1057237-1057584 1.0000 100 chrIV:835731-836240 1.0000 100 chrXIII:120113-120757 1.0000 100 chrVI:224172-224620 1.0000 100 chrXVI:514365-516898 1.0000 100 chrXVI:109061-114572 1.0000 100 chrXVI:252144-252788 1.0000 100 chrVII:805048-805369 1.0000 100 chrII:394199-397836 1.0000 100 chrX:541311-541411 1.0000 100 chrII:477003-477482 1.0000 100 chrIV:490408-491291 1.0000 100 chrXII:1017897-1018720 1.0000 100 chrIX:121543-122187 1.0000 100 chrXIII:671700-673832 1.0000 100 chrXI:109521-109924 1.0000 100 chrXII:837570-839367 1.0000 100 chrV:66986-68760 1.0000 100 chrVIII:471721-472007 1.0000 100 chrXIV:62059-62703 1.0000 100 chrXVI:122559-125676 1.0000 100 chrVII:788300-788757 1.0000 100 chrXV:1015286-1015745 1.0000 100 chrXIII:183760-184167 1.0000 100 chrXII:522818-523462 1.0000 100 chrXIII:702472-703593 1.0000 100 chrIV:915566-916319 1.0000 100 chrIV:720831-721437 1.0000 100 chrVII:364261-364424 1.0000 100 chrXI:519616-521063 1.0000 100 chrXV:963159-966345 1.0000 100 chrVII:970546-973052 1.0000 100 chrV:397005-397649 1.0000 100 chrXIV:654484-659771 1.0000 100 chrXII:899324-899715 1.0000 100 chrXII:499005-499753 1.0000 100 chrXIII:119992-120306 1.0000 100 chrXII:349004-350903 1.0000 100 chrX:519418-519518 1.0000 100 chrVII:1057594-1057841 1.0000 100 chrXI:217663-218664 1.0000 100 chrIII:259993-260637 1.0000 100 chrXII:713128-713595 1.0000 100 chrII:112385-113029 1.0000 100 chrIV:809090-810520 1.0000 100 chrX:378160-378260 1.0000 100 chrV:138457-139985 1.0000 100 chrX:120521-120621 1.0000 100 chrXVI:753602-754246 1.0000 100 chrVII:148120-148764 1.0000 100 chrVII:372877-373521 1.0000 100 chrVII:545473-545637 1.0000 100 chrXI:100828-107022 1.0000 100 chrIII:191716-192360 1.0000 100 chrXVI:280707-281530 1.0000 100 chrV:441799-442603 1.0000 100 chrXVI:303211-304321 1.0000 100 chrXVI:371973-373180 1.0000 100 chrVI:137333-137751 1.0000 100 chrXII:648532-650915 1.0000 100 chrVII:440484-442816 1.0000 100 chrVII:663945-664319 1.0000 100 chrVII:479133-482925 1.0000 100 chrIII:200945-201589 1.0000 100 chrIII:57253-58356 1.0000 100 chrXI:558586-559230 1.0000 100 chrXIII:362869-363325 1.0000 100 chrXII:1064779-1065396 1.0000 100 chrIII:191919-192563 1.0000 100 chrVII:1020010-1020594 1.0000 100 chrVIII:543476-543795 1.0000 100 chrIV:392537-392872 1.0000 100 chrXIV:402348-402836 1.0000 100 chrXV:1015286-1016037 1.0000 100 chrXII:241608-242028 1.0000 100 chrIV:130551-131001 1.0000 100 chrVI:64949-65362 1.0000 100 chrXII:95315-96046 1.0000 100 chrII:413777-414354 1.0000 100 chrVII:611739-612855 1.0000 100 chrV:299243-301909 1.0000 100 chrXV:619718-624690 1.0000 100 chrV:529372-529640 1.0000 100 chrVIII:119784-121314 1.0000 100 chrVII:183636-184280 1.0000 100 chrII:234751-235621 1.0000 100 chrXII:710690-710907 1.0000 100 chrVII:727673-728172 1.0000 100 chrVIII:382893-383353 1.0000 100 chrII:169184-169558 1.0000 100 chrIV:655928-656683 1.0000 100 chrXVI:532608-533469 1.0000 100 chrX:411122-411222 1.0000 100 chrVII:277757-278768 1.0000 100 chrII:556853-558541 1.0000 100 chrXVI:868551-868961 1.0000 100 chrXII:919254-919838 1.0000 100 chrXIII:507206-508699 1.0000 100 chrX:663803-663903 1.0000 100 chrVII:364963-365607 1.0000 100 chrVII:599765-601354 1.0000 100 chrXV:883604-883886 1.0000 100 chrIV:1466206-1467926 1.0000 100 chrXI:488438-488764 1.0000 100 chrVIII:100067-100711 1.0000 100 chrXVI:433026-434258 1.0000 100 chrVII:110464-110898 1.0000 100 chrIX:190809-191476 1.0000 100 chrIV:992609-993047 1.0000 100 chrXVI:107500-108144 1.0000 100 chrXIII:251696-252457 1.0000 100 chrVII:279210-279404 1.0000 100 chrXIII:725982-726681 1.0000 100 chrXVI:810448-810864 1.0000 100 chrXIV:285509-285699 1.0000 100 chrXII:818393-818826 1.0000 100 chrVII:401397-401826 1.0000 100 chrX:652085-652185 1.0000 100 chrVII:782432-783076 1.0000 100 chrVIII:80345-80717 1.0000 100 chrXIV:229657-230151 1.0000 100 chrXV:444732-446228 1.0000 100 chrIV:1204244-1206286 1.0000 100 chrIV:236099-236909 1.0000 100 chrXII:254201-255179 1.0000 100 chrXV:547932-548216 1.0000 100 chrVII:1050761-1051405 1.0000 100 chrIV:1119918-1120562 1.0000 100 chrVII:115293-115746 1.0000 100 chrXII:805953-807113 1.0000 100 chrXIII:296757-298863 1.0000 100 chrXII:656783-657197 1.0000 100 chrII:143929-144379 1.0000 100 chrXVI:701699-702382 1.0000 100 chrXVI:311163-311326 1.0000 100 chrXVI:803633-803875 1.0000 100 chrVII:823268-823713 1.0000 100 chrVII:475932-478310 1.0000 100 chrX:124099-124199 1.0000 100 chrIV:118393-118825 1.0000 100 chrVII:282699-283041 1.0000 100 chrV:266241-267814 1.0000 100 chrV:423066-423502 1.0000 100 chrIV:768287-768931 1.0000 100 chrXIV:216287-216622 1.0000 100 chrVII:609587-609856 1.0000 100 chrIV:467009-467820 1.0000 100 chrII:612037-612706 1.0000 100 chrXII:962786-963278 1.0000 100 chrV:99904-100350 1.0000 100 chrXVI:875930-876091 1.0000 100 chrVII:122077-122493 1.0000 100 chrX:285577-285677 1.0000 100 chrV:406812-408659 1.0000 100 chrXIII:368550-369191 1.0000 100 chrXII:734606-735007 1.0000 100 chrIV:161782-162426 1.0000 100 chrXIV:442790-443314 1.0000 100 chrXII:498489-498886 1.0000 100 chrII:118871-119135 1.0000 100 chrVII:541466-542124 1.0000 100 chrXVI:64775-65307 1.0000 100 chrX:209045-209145 1.0000 100 chrVII:254099-254575 1.0000 100 chrXVI:396081-396725 1.0000 100 chrXIII:372322-372721 1.0000 100 chrXV:30-344 1.0000 100 chrII:81859-82721 1.0000 100 chrXVI:165161-165468 1.0000 100 chrX:75322-75422 1.0000 100 chrVIII:290664-292197 1.0000 100 chrXII:569075-570927 1.0000 100 chrXI:591203-591803 1.0000 100 chrIV:1172485-1173129 1.0000 100 chrVIII:34421-35983 1.0000 100 chrXIII:731990-732429 1.0000 100 chrV:335795-336439 1.0000 100 chrIV:355170-356707 1.0000 100 chrVII:534781-535247 1.0000 100 chrIV:230085-230252 1.0000 100 chrXVI:406126-406587 1.0000 100 chrVIII:125883-126334 1.0000 100 chrII:376708-377869 1.0000 100 chrXIII:290609-290998 1.0000 100 chrXV:179996-180640 1.0000 100 chrXV:307233-307565 1.0000 100 chrX:451798-451898 1.0000 100 chrXII:281961-282220 1.0000 100 chrXVI:139614-140275 1.0000 100 chrXII:280954-281154 1.0000 100 chrXI:108391-108600 1.0000 100 chrX:520163-520263 1.0000 100 chrV:282174-283575 1.0000 100 chrVIII:145859-146531 1.0000 100 chrIV:479333-479582 1.0000 100 chrXI:326082-327471 1.0000 100 chrV:378660-379304 1.0000 100 chrVI:64116-64481 1.0000 100 chrVII:851437-852081 1.0000 100 chrIV:1352240-1352737 1.0000 100 chrIV:307987-308406 1.0000 100 chrXI:141484-142673 1.0000 100 chrXIV:96021-96523 1.0000 100 chrXV:75841-76124 1.0000 100 chrXIII:389219-390985 1.0000 100 chrX:483813-483913 1.0000 100 chrV:425005-425217 1.0000 100 chrX:442642-442742 1.0000 100 chrVIII:148915-149297 1.0000 100 chrX:348858-348958 1.0000 100 chrV:435622-436030 1.0000 100 chrIV:555504-556280 1.0000 100 chrXV:87810-88138 1.0000 100 chrX:415824-415924 1.0000 100 chrIV:1201521-1201989 1.0000 100 chrIV:568684-569160 1.0000 100 chrVII:93236-93880 1.0000 100 chrV:53508-53953 1.0000 100 chrXVI:642512-643512 1.0000 100 chrXIV:172448-173171 1.0000 100 chrXII:794239-795225 1.0000 100 chrXVI:745626-746053 1.0000 100 chrXIV:24393-27427 1.0000 100 chrXIII:552693-553097 1.0000 100 chrXII:919680-920134 1.0000 100 chrIV:382368-383375 1.0000 100 chrV:130973-131344 1.0000 100 chrXV:548367-548654 1.0000 100 chrIV:205467-206918 1.0000 100 chrV:93288-93932 1.0000 100 chrII:415473-415897 1.0000 100 chrXV:896537-897617 1.0000 100 chrXII:784148-784582 1.0000 100 chrVII:57732-59051 1.0000 100 chrVII:372615-373259 1.0000 100 chrXV:725082-725743 1.0000 100 chrXVI:749164-749442 1.0000 100 chrXII:368967-370231 1.0000 100 chrIV:884156-884616 1.0000 100 chrVII:846752-847468 1.0000 100 chrIV:218065-218709 1.0000 100 chrVI:133856-134117 1.0000 100 chrVII:612847-613862 1.0000 100 chrIV:434030-434557 1.0000 100 chrII:563026-563659 1.0000 100 chrII:59798-60442 1.0000 100 chrII:231630-231907 1.0000 100 chrVII:806116-807079 1.0000 100 chrXV:780038-780850 1.0000 100 chrXI:337256-337563 1.0000 100 chrXII:628164-628673 1.0000 100 chrIV:340587-340766 1.0000 100 chrXV:113615-113999 1.0000 100 chrIII:137822-139204 1.0000 100 chrXV:113765-114409 1.0000 100 chrIII:59655-59993 1.0000 100 chrIV:802580-803025 1.0000 100 chrXV:543229-543504 1.0000 100 chrV:304218-306233 1.0000 100 chrXIV:659645-660929 1.0000 100 chrXII:47675-48339 1.0000 100 chrVII:117271-117915 1.0000 100 chrXIV:102497-102910 1.0000 100 chrVIII:103856-104262 1.0000 100 chrXIV:413800-415144 1.0000 100 chrII:266183-266631 1.0000 100 chrXV:80593-80876 1.0000 100 chrXIII:889959-890286 1.0000 100 chrX:703230-703330 1.0000 100 chrXIII:251696-252394 1.0000 100 chrX:382925-383025 1.0000 100 chrIV:573156-573456 1.0000 100 chrXII:232087-234119 1.0000 100 chrXII:708077-710086 1.0000 100 chrXV:418442-419086 1.0000 100 chrII:680349-681886 1.0000 100 chrXII:128204-128848 1.0000 100 chrIII:142596-142972 1.0000 100 chrIX:27-358 1.0000 100 chrIII:163436-163918 1.0000 100 chrX:73356-73456 1.0000 100 chrXII:1028210-1028612 1.0000 100 chrI:76952-79603 1.0000 100 chrVII:344154-344927 1.0000 100 chrVII:876197-876721 1.0000 100 chrXV:828088-828526 1.0000 100 chrXVI:193607-194649 1.0000 100 chrXV:281946-282450 1.0000 100 chrXVI:353117-353539 1.0000 100 chrXII:545368-545864 1.0000 100 chrXV:976141-976817 1.0000 100 chrIV:1150701-1151141 1.0000 100 chrIII:169332-169722 1.0000 100 chrIII:178304-178688 1.0000 100 chrIV:229479-229811 1.0000 100 chrV:85095-85491 1.0000 100 chrII:44978-45380 1.0000 100 chrIV:1162621-1164409 1.0000 100 chrXV:1005755-1006010 1.0000 100 chrI:88529-89173 1.0000 100 chrXIV:19429-20073 1.0000 100 chrXIII:292957-293265 1.0000 100 chrXIV:184411-185055 1.0000 100 chrXVI:103524-104168 1.0000 100 chrIX:217928-218259 1.0000 100 chrII:60822-61287 1.0000 100 chrXI:308005-308423 1.0000 100 chrII:88062-88726 1.0000 100 chrIX:316085-316628 1.0000 100 chrV:469266-469672 1.0000 100 chrVII:399006-400537 1.0000 100 chrXII:507083-507765 1.0000 100 chrXVI:139614-140258 1.0000 100 chrIV:217165-217527 1.0000 100 chrXII:935649-935973 1.0000 100 chrXIII:759912-762333 1.0000 100 chrXI:309249-309893 1.0000 100 chrVII:674936-675331 1.0000 100 chrXVI:470650-471197 1.0000 100 chrXIII:524950-525679 1.0000 100 chrIV:45080-46109 1.0000 100 chrV:61142-62156 1.0000 100 chrX:292124-292224 1.0000 100 chrXVI:718540-719094 1.0000 100 chrXIII:626330-626706 1.0000 100 chrIV:519534-519951 1.0000 100 chrIV:1268897-1269548 1.0000 100 chrIV:937726-938370 1.0000 100 chrVIII:451346-453055 1.0000 100 chrV:339631-340977 1.0000 100 chrXV:789981-790625 1.0000 100 chrXIII:726822-727671 1.0000 100 chrXIII:633026-633884 1.0000 100 chrVII:311020-312184 1.0000 100 chrXIII:892985-894271 1.0000 100 chrXII:791431-792075 1.0000 100 chrVI:162029-162415 1.0000 100 chrVII:799575-800266 1.0000 100 chrVIII:230623-230825 1.0000 100 chrVIII:385581-386875 1.0000 100 chrI:166037-166590 1.0000 100 chrVII:979531-980621 1.0000 100 chrXII:448511-448924 1.0000 100 chrVI:95450-95881 1.0000 100 chrXII:896048-896692 1.0000 100 chrIX:316979-317623 1.0000 100 chrXV:1028676-1029255 1.0000 100 chrXV:494402-494604 1.0000 100 chrXV:812363-812628 1.0000 100 chrXIII:124299-124737 1.0000 100 chrXI:25639-26605 1.0000 100 chrVII:787302-787504 1.0000 100 chrX:233714-233814 1.0000 100 chrXVI:769014-769533 1.0000 100 chrIV:1324415-1325059 1.0000 100 chrIII:220354-220692 1.0000 100 chrXV:614011-614416 1.0000 100 chrVIII:148091-148436 1.0000 100 chrXVI:711407-711783 1.0000 100 chrXI:29-319 1.0000 100 chrXVI:350008-350744 1.0000 100 chrIII:65909-66997 1.0000 100 chrXIV:502075-502974 1.0000 100 chrXV:487239-487664 1.0000 100 chrXII:818790-819214 1.0000 100 chrXIV:216465-216653 1.0000 100 chrXI:112853-113996 1.0000 100 chrXII:329998-330642 1.0000 100 chrXII:65390-65666 1.0000 100 chrVII:405246-405698 1.0000 100 chrX:385890-385990 1.0000 100 chrXV:506079-506314 1.0000 100 chrXIII:504673-505178 1.0000 100 chrXVI:646121-646363 1.0000 100 chrXIII:163068-163995 1.0000 100 chrXVI:743120-743764 1.0000 100 chrXIII:753436-754080 1.0000 100 chrXIII:485053-486324 1.0000 100 chrXIV:495163-495621 1.0000 100 chrII:796363-797752 1.0000 100 chrIII:217771-218342 1.0000 100 chrXV:253774-254147 1.0000 100 chrXV:254423-254920 1.0000 100 chrXV:977034-977543 1.0000 100 chrXI:618792-619235 1.0000 100 chrXII:401723-402835 1.0000 100 chrXV:216215-216711 1.0000 100 chrXVI:693575-693956 1.0000 100 chrXIV:256539-256903 1.0000 100 chrXVI:192101-192745 1.0000 100 chrXV:594202-594627 1.0000 100 chrVII:556044-556688 1.0000 100 chrXIII:356823-357125 1.0000 100 chrXIV:181339-181983 1.0000 100 chrXV:779673-780127 1.0000 100 chrX:440294-440394 1.0000 100 chrVII:882113-883876 1.0000 100 chrXII:1038636-1040063 1.0000 100 chrVIII:160457-160656 1.0000 100 chrX:374277-374377 1.0000 100 chrII:373491-375537 1.0000 100 chrIV:1167268-1167585 1.0000 100 chrXI:334063-334846 1.0000 100 chrX:419939-420039 1.0000 100 chrVII:279255-279899 1.0000 100 chrXIII:379189-379620 1.0000 100 chrXII:522178-522418 1.0000 100 chrXVI:76317-76763 1.0000 100 chrVII:783675-784507 1.0000 100 chrX:651225-651325 1.0000 100 chrXII:922056-922630 1.0000 100 chrXVI:786734-787703 1.0000 100 chrV:420379-421023 1.0000 100 chrXIV:575102-575815 1.0000 100 chrII:605704-606161 1.0000 100 chrIV:44236-44698 1.0000 100 chrVII:730948-731388 1.0000 100 chrXII:1018946-1019398 1.0000 100 chrXVI:42694-42916 1.0000 100 chrXII:545023-545439 1.0000 100 chrVII:845427-845870 1.0000 100 chrXV:76857-77118 1.0000 100 chrVIII:85185-85584 1.0000 100 chrIV:50-369 1.0000 100 chrXIV:499715-500783 1.0000 100 chrIV:1301933-1302465 1.0000 100 chrX:165638-165738 1.0000 100 chrXIII:222600-222856 1.0000 100 chrXII:934585-934919 1.0000 100 chrVII:1048347-1049810 1.0000 100 chrIV:201207-201684 1.0000 100 chrIV:488570-489093 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 481 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 48100 N= 481 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.302 C 0.198 G 0.198 T 0.302 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--THP2/background): A 0.304 C 0.196 G 0.196 T 0.304 ******************************************************************************** ******************************************************************************** MOTIF GKTARSGCGTCTGACTMNTAATCAGAAGRT MEME-1 width = 30 sites = 22 llr = 540 E-value = 2.0e-087 ******************************************************************************** -------------------------------------------------------------------------------- Motif GKTARSGCGTCTGACTMNTAATCAGAAGRT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a4:::2:22:6::42:a8::617a:5: pos.-specific C ::2::5:a:252238:323:2:8:1::2:: probability G a6::45a:8:1:8:::12:::32253:85: matrix T :48:2::::816::2a247::7:22::::a bits 2.4 * ** 2.1 * ** 1.9 * ** 1.6 * * *** * * * * ** * Relative 1.4 * * *** * ** * * ** * Entropy 1.2 ** * ***** * ** * * **** (35.4 bits) 0.9 **** ***** * ** ***** ***** 0.7 **** ***** * ** ***** ***** 0.5 **** *********** ************ 0.2 **************** ************ 0.0 ------------------------------ Multilevel GGTAAGGCGTCTGACTATTAATCAGAAGGT consensus T GC CA CCT CAC GG TG A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTARSGCGTCTGACTMNTAATCAGAAGRT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrVII:876197-876721 + 2 9.37e-15 C GGTAGCGCGTATGACTCTTAATCATAAGGT TAGGGGTTCG chrIV:1201521-1201989 + 62 9.37e-15 TGGCGCAATC GGTAGCGCGTATGACTCTTAATCATAAGGT TAGGGGTTC chrV:435622-436030 - 2 9.37e-15 TGGCGCAATC GGTAGCGCGTATGACTCTTAATCATAAGGT T chrIV:1352240-1352737 - 54 9.37e-15 TGGCGCAATC GGTAGCGCGTATGACTCTTAATCATAAGGT TAGGGGTTCG chrVII:122077-122493 + 51 9.37e-15 TGGCGCAATC GGTAGCGCGTATGACTCTTAATCATAAGGT TAGGGGTTCG chrX:374277-374377 - 53 1.12e-14 GTGGCGTAAT GGCAACGCGTCTGACTTCTAATCAGAAGAT TATGGGTTCG chrVII:405246-405698 + 64 1.12e-14 GTGGCGTAAT GGCAACGCGTCTGACTTCTAATCAGAAGAT TATGGGT chrIV:568684-569160 + 26 1.12e-14 GTGGCGTAAT GGCAACGCGTCTGACTTCTAATCAGAAGAT TATGGGTTCG chrVII:730948-731388 + 37 2.96e-12 GGCCAAGTTG GTTAAGGCGTGCGACTGTTAATCGCAAGAT CGTGAGTTCA chrXV:487239-487664 + 56 2.96e-12 GGCCAAGTTG GTTAAGGCGTGCGACTGTTAATCGCAAGAT CGTGAGTTCA chrVI:137333-137751 - 20 2.96e-12 GGCCAAGTTG GTTAAGGCGTGCGACTGTTAATCGCAAGAT CGTGAGTTCA chrII:266183-266631 + 38 3.60e-12 TGGCCAAGTT GGTAAGGCGCCACACTAGTAATGTGGAGAT CATCGGTTCA chrXV:113615-113999 + 62 3.60e-12 TGGCCAAGTT GGTAAGGCGCCACACTAGTAATGTGGAGAT CATCGGTTC chrIV:434030-434557 - 47 3.60e-12 TGGCCAAGTT GGTAAGGCGCCACACTAGTAATGTGGAGAT CATCGGTTCA chrV:469266-469672 + 56 4.49e-11 GGTCTAGTCG GTTATGGCATCTGCTTAACACGCAGAACGT CCCCAGTTCG chrXI:308005-308423 - 6 4.49e-11 GGTCTAGTCG GTTATGGCATCTGCTTAACACGCAGAACGT CCCCA chrVII:823268-823713 + 60 4.49e-11 GGTCTAGTCG GTTATGGCATCTGCTTAACACGCAGAACGT CCCCAGTTCG chrX:378160-378260 + 64 4.49e-11 GGTCTAGTCG GTTATGGCATCTGCTTAACACGCAGAACGT CCCCAGT chrI:166037-166590 + 21 6.22e-11 TGGCGCAGTT GGTAGCGCGCTTCCCTTGCAAGGAAGAGGT CATCGGTTCG chrXV:976141-976817 + 9 1.01e-10 GCTCAGTA GGAAGAGCGTCAGTCTCATAATCTGAAGGT CGAGAGTTCG chrX:233714-233814 + 54 1.64e-10 TGGCCCAATG GTCACGGCGTCTGGCTACGAACCAGGAGAT TCCAGGTTCG chrXII:656783-657197 - 20 8.37e-10 TGGCGTAGTC GGTAGCGCGCTCCCTTAGCATGGGAGAGGT CTCCGGTTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTARSGCGTCTGACTMNTAATCAGAAGRT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:876197-876721 9.4e-15 1_[+1]_69 chrIV:1201521-1201989 9.4e-15 61_[+1]_9 chrV:435622-436030 9.4e-15 1_[-1]_69 chrIV:1352240-1352737 9.4e-15 53_[-1]_17 chrVII:122077-122493 9.4e-15 50_[+1]_20 chrX:374277-374377 1.1e-14 52_[-1]_18 chrVII:405246-405698 1.1e-14 63_[+1]_7 chrIV:568684-569160 1.1e-14 25_[+1]_45 chrVII:730948-731388 3e-12 36_[+1]_34 chrXV:487239-487664 3e-12 55_[+1]_15 chrVI:137333-137751 3e-12 19_[-1]_51 chrII:266183-266631 3.6e-12 37_[+1]_33 chrXV:113615-113999 3.6e-12 61_[+1]_9 chrIV:434030-434557 3.6e-12 46_[-1]_24 chrV:469266-469672 4.5e-11 55_[+1]_15 chrXI:308005-308423 4.5e-11 5_[-1]_65 chrVII:823268-823713 4.5e-11 59_[+1]_11 chrX:378160-378260 4.5e-11 63_[+1]_7 chrI:166037-166590 6.2e-11 20_[+1]_50 chrXV:976141-976817 1e-10 8_[+1]_62 chrX:233714-233814 1.6e-10 53_[+1]_17 chrXII:656783-657197 8.4e-10 19_[-1]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTARSGCGTCTGACTMNTAATCAGAAGRT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GKTARSGCGTCTGACTMNTAATCAGAAGRT width=30 seqs=22 chrVII:876197-876721 ( 2) GGTAGCGCGTATGACTCTTAATCATAAGGT 1 chrIV:1201521-1201989 ( 62) GGTAGCGCGTATGACTCTTAATCATAAGGT 1 chrV:435622-436030 ( 2) GGTAGCGCGTATGACTCTTAATCATAAGGT 1 chrIV:1352240-1352737 ( 54) GGTAGCGCGTATGACTCTTAATCATAAGGT 1 chrVII:122077-122493 ( 51) GGTAGCGCGTATGACTCTTAATCATAAGGT 1 chrX:374277-374377 ( 53) GGCAACGCGTCTGACTTCTAATCAGAAGAT 1 chrVII:405246-405698 ( 64) GGCAACGCGTCTGACTTCTAATCAGAAGAT 1 chrIV:568684-569160 ( 26) GGCAACGCGTCTGACTTCTAATCAGAAGAT 1 chrVII:730948-731388 ( 37) GTTAAGGCGTGCGACTGTTAATCGCAAGAT 1 chrXV:487239-487664 ( 56) GTTAAGGCGTGCGACTGTTAATCGCAAGAT 1 chrVI:137333-137751 ( 20) GTTAAGGCGTGCGACTGTTAATCGCAAGAT 1 chrII:266183-266631 ( 38) GGTAAGGCGCCACACTAGTAATGTGGAGAT 1 chrXV:113615-113999 ( 62) GGTAAGGCGCCACACTAGTAATGTGGAGAT 1 chrIV:434030-434557 ( 47) GGTAAGGCGCCACACTAGTAATGTGGAGAT 1 chrV:469266-469672 ( 56) GTTATGGCATCTGCTTAACACGCAGAACGT 1 chrXI:308005-308423 ( 6) GTTATGGCATCTGCTTAACACGCAGAACGT 1 chrVII:823268-823713 ( 60) GTTATGGCATCTGCTTAACACGCAGAACGT 1 chrX:378160-378260 ( 64) GTTATGGCATCTGCTTAACACGCAGAACGT 1 chrI:166037-166590 ( 21) GGTAGCGCGCTTCCCTTGCAAGGAAGAGGT 1 chrXV:976141-976817 ( 9) GGAAGAGCGTCAGTCTCATAATCTGAAGGT 1 chrX:233714-233814 ( 54) GTCACGGCGTCTGGCTACGAACCAGGAGAT 1 chrXII:656783-657197 ( 20) GGTAGCGCGCTCCCTTAGCATGGGAGAGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTARSGCGTCTGACTMNTAATCAGAAGRT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 34151 bayes= 11.6262 E= 2.0e-087 -1110 -1110 235 -1110 -1110 -1110 170 26 -274 -11 -1110 134 172 -1110 -1110 -1110 43 -210 89 -74 -274 122 135 -1110 -1110 -1110 235 -1110 -1110 235 -1110 -1110 -74 -1110 206 -1110 -1110 22 -1110 134 -42 148 -52 -174 -74 -11 -1110 106 -1110 22 198 -1110 106 48 -210 -274 -1110 198 -1110 -42 -1110 -1110 -1110 172 43 48 -52 -74 -42 -11 22 26 -1110 48 -210 116 172 -1110 -1110 -1110 134 -11 -1110 -274 -1110 -210 48 116 -1110 198 22 -1110 106 -1110 -11 -74 -174 -52 148 -42 126 -1110 48 -1110 172 -1110 -1110 -1110 -1110 -11 206 -1110 58 -1110 148 -1110 -1110 -1110 -1110 172 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTARSGCGTCTGACTMNTAATCAGAAGRT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 22 E= 2.0e-087 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.636364 0.363636 0.045455 0.181818 0.000000 0.772727 1.000000 0.000000 0.000000 0.000000 0.409091 0.045455 0.363636 0.181818 0.045455 0.454545 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.181818 0.000000 0.818182 0.000000 0.000000 0.227273 0.000000 0.772727 0.227273 0.545455 0.136364 0.090909 0.181818 0.181818 0.000000 0.636364 0.000000 0.227273 0.772727 0.000000 0.636364 0.272727 0.045455 0.045455 0.000000 0.772727 0.000000 0.227273 0.000000 0.000000 0.000000 1.000000 0.409091 0.272727 0.136364 0.181818 0.227273 0.181818 0.227273 0.363636 0.000000 0.272727 0.045455 0.681818 1.000000 0.000000 0.000000 0.000000 0.772727 0.181818 0.000000 0.045455 0.000000 0.045455 0.272727 0.681818 0.000000 0.772727 0.227273 0.000000 0.636364 0.000000 0.181818 0.181818 0.090909 0.136364 0.545455 0.227273 0.727273 0.000000 0.272727 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.181818 0.818182 0.000000 0.454545 0.000000 0.545455 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTARSGCGTCTGACTMNTAATCAGAAGRT MEME-1 regular expression -------------------------------------------------------------------------------- G[GT]TA[AG][GC]GCG[TC][CA]T[GC][AC][CT]T[AC][TAG][TC]AA[TG][CG]A[GT][AG]AG[GA]T -------------------------------------------------------------------------------- Time 221.63 secs. ******************************************************************************** ******************************************************************************** MOTIF GDHGSCTTWAACCACTMRRCCAHNNRVSC MEME-2 width = 29 sites = 29 llr = 541 E-value = 1.8e-063 ******************************************************************************** -------------------------------------------------------------------------------- Motif GDHGSCTTWAACCACTMRRCCAHNNRVSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :4321212368:29::436::a4324411 pos.-specific C 21314611::2a7:a:22:a7:4231359 probability G 72175:2::2::11::244::::23623: matrix T 134::27762:::::a1:::3:232:11: bits 2.4 * * * 2.1 * * * 1.9 * * * * 1.6 * ** * * * Relative 1.4 * *** *** * Entropy 1.2 * ****** *** * (26.9 bits) 0.9 * * ****** **** * * 0.7 * *** * ****** ***** * ** 0.5 * ************* ****** * ** 0.2 * ******************** **** 0.0 ----------------------------- Multilevel GATGGCTTTAACCACTAGACCACTCGACC consensus TAACAG ATC A CAG T AAGACG sequence GC T GC TCT G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDHGSCTTWAACCACTMRRCCAHNNRVSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrVII:845427-845870 - 51 9.09e-12 CGATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGC TTGTTATTTA chrVI:162029-162415 - 56 9.09e-12 CGATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGC TTGTTTTCTT chrXV:281946-282450 - 16 9.09e-12 CGATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGC GCTTTCATGT chrIII:142596-142972 + 9 9.09e-12 ATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGC TAGTAATCTT chrIV:992609-993047 - 54 9.09e-12 CGATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGC TCACAATTGT chrXIII:183760-184167 + 27 9.09e-12 CGATGGCAAC GTTGGATTTTACCACTAAACCACTTGCGC GATCTTTATT chrXIII:504673-505178 - 20 2.20e-11 TCTTGAATCA GGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATCTGT chrXII:628164-628673 - 15 2.20e-11 TCTTGAATCA GGCGCCTTAGACCGCTCGGCCAAACAACC ACTTATTTGT chrXIV:442790-443314 - 4 2.20e-11 TCTTGAATCA GGCGCCTTAGACCGCTCGGCCAAACAACC ACT chrXII:734606-735007 - 46 2.92e-11 TTATTAGCAC GGTGCCTTAACCAACTGGGCCAAGAGACC AAACTTTGTT chrIV:488570-489093 + 61 3.12e-10 GTGTAAAGGC GACGTCTTGAACCACTGGACCATTGGACC GGAAACCCAT chrIV:1150701-1151141 + 42 3.49e-10 AAATAGCAGG CATCGCCTTAACCACTCGGCCACTGGGAC TGAAACACTT chrXII:784148-784582 - 39 3.49e-10 AAATAGCAGG CATCGCCTTAACCACTCGGCCACTGGGAC GGTTGAACAA chrIV:519534-519951 - 51 3.90e-10 TCTTAAGTCT GCCGCCTTAGACCACTCGGCCAACCCTCC GTAAAATCAC chrXII:962786-963278 + 45 3.90e-10 TCTTAAGTCT GCCGCCTTAGACCACTCGGCCAACCCTCC GTCGATAATA chrIV:884156-884616 - 25 6.65e-10 GCTATAAGCA CGAAGCTCTAACCACTGAGCTACACGAGC ATTTTCGAAA chrVIII:85185-85584 + 9 1.22e-09 GTTAAGCA GATGCCATAACCGACTAGACCACGAAACC AAATTCTTAT chrXIII:372322-372721 + 19 1.22e-09 GTGTTAAGCA GATGCCATAACCGACTAGACCACGAAACC AGGTTTTATT chrXII:448511-448924 + 26 3.39e-09 GATCAAAACC GAAAGTGATAACCACTACACTATAGGACC GGAACTTCTT chrIV:802580-803025 + 22 3.39e-09 GATCAAAACC GAAAGTGATAACCACTACACTATAGGACC GACAATTCAT chrXIV:102497-102910 - 63 9.87e-09 TAACAGTCG CACGCCTTAACCAACTTGGCCATGGAGTC TTATAATATA chrXVI:810448-810864 - 70 9.87e-09 CG CACGCCTTAACCAACTTGGCCATGGAGTC GCAAATAATG chrV:130973-131344 + 17 1.34e-08 GATCAAAACC GAAAGTGATAACCACTACACTATAAAACC TCTTAATTAT chrXV:594202-594627 + 33 3.51e-08 CTTGGGAAGC ATAAATTCTAACCACTGAACCACTTGCGC GTTTCAATCA chrXIV:96021-96523 + 62 3.51e-08 CTTGGAAGGG TGGGATGATAACCACTACACTAACCGCCC ATGTGTTGGA chrVII:779406-779832 - 47 3.51e-08 CTTGGAAGGG TGGGATGATAACCACTACACTAACCGCCC GGGGTTAACT chrXVI:769014-769533 + 51 6.84e-08 CTTAAAAGCC GAACGCTCTACCAACTGAGCTAACAAGGA TGAGTTCTTC chrVII:115293-115746 - 19 6.84e-08 CTTAAAAGCC GAACGCTCTACCAACTGAGCTAACAAGGA TGAGTTCTTC chrIV:768287-768931 + 40 2.21e-07 TAACGATGTC GTAACCGTCAACAACTTCACCAAAGACAA CATGCTTACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDHGSCTTWAACCACTMRRCCAHNNRVSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:845427-845870 9.1e-12 50_[-2]_21 chrVI:162029-162415 9.1e-12 55_[-2]_16 chrXV:281946-282450 9.1e-12 15_[-2]_56 chrIII:142596-142972 9.1e-12 8_[+2]_63 chrIV:992609-993047 9.1e-12 53_[-2]_18 chrXIII:183760-184167 9.1e-12 26_[+2]_45 chrXIII:504673-505178 2.2e-11 19_[-2]_52 chrXII:628164-628673 2.2e-11 14_[-2]_57 chrXIV:442790-443314 2.2e-11 3_[-2]_68 chrXII:734606-735007 2.9e-11 45_[-2]_26 chrIV:488570-489093 3.1e-10 60_[+2]_11 chrIV:1150701-1151141 3.5e-10 41_[+2]_30 chrXII:784148-784582 3.5e-10 38_[-2]_33 chrIV:519534-519951 3.9e-10 50_[-2]_21 chrXII:962786-963278 3.9e-10 44_[+2]_27 chrIV:884156-884616 6.7e-10 24_[-2]_47 chrVIII:85185-85584 1.2e-09 8_[+2]_63 chrXIII:372322-372721 1.2e-09 18_[+2]_53 chrXII:448511-448924 3.4e-09 25_[+2]_46 chrIV:802580-803025 3.4e-09 21_[+2]_50 chrXIV:102497-102910 9.9e-09 62_[-2]_9 chrXVI:810448-810864 9.9e-09 69_[-2]_2 chrV:130973-131344 1.3e-08 16_[+2]_55 chrXV:594202-594627 3.5e-08 32_[+2]_39 chrXIV:96021-96523 3.5e-08 61_[+2]_10 chrVII:779406-779832 3.5e-08 46_[-2]_25 chrXVI:769014-769533 6.8e-08 50_[+2]_21 chrVII:115293-115746 6.8e-08 18_[-2]_53 chrIV:768287-768931 2.2e-07 39_[+2]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDHGSCTTWAACCACTMRRCCAHNNRVSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GDHGSCTTWAACCACTMRRCCAHNNRVSC width=29 seqs=29 chrVII:845427-845870 ( 51) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrVI:162029-162415 ( 56) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrXV:281946-282450 ( 16) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrIII:142596-142972 ( 9) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrIV:992609-993047 ( 54) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrXIII:183760-184167 ( 27) GTTGGATTTTACCACTAAACCACTTGCGC 1 chrXIII:504673-505178 ( 20) GGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrXII:628164-628673 ( 15) GGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrXIV:442790-443314 ( 4) GGCGCCTTAGACCGCTCGGCCAAACAACC 1 chrXII:734606-735007 ( 46) GGTGCCTTAACCAACTGGGCCAAGAGACC 1 chrIV:488570-489093 ( 61) GACGTCTTGAACCACTGGACCATTGGACC 1 chrIV:1150701-1151141 ( 42) CATCGCCTTAACCACTCGGCCACTGGGAC 1 chrXII:784148-784582 ( 39) CATCGCCTTAACCACTCGGCCACTGGGAC 1 chrIV:519534-519951 ( 51) GCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrXII:962786-963278 ( 45) GCCGCCTTAGACCACTCGGCCAACCCTCC 1 chrIV:884156-884616 ( 25) CGAAGCTCTAACCACTGAGCTACACGAGC 1 chrVIII:85185-85584 ( 9) GATGCCATAACCGACTAGACCACGAAACC 1 chrXIII:372322-372721 ( 19) GATGCCATAACCGACTAGACCACGAAACC 1 chrXII:448511-448924 ( 26) GAAAGTGATAACCACTACACTATAGGACC 1 chrIV:802580-803025 ( 22) GAAAGTGATAACCACTACACTATAGGACC 1 chrXIV:102497-102910 ( 63) CACGCCTTAACCAACTTGGCCATGGAGTC 1 chrXVI:810448-810864 ( 70) CACGCCTTAACCAACTTGGCCATGGAGTC 1 chrV:130973-131344 ( 17) GAAAGTGATAACCACTACACTATAAAACC 1 chrXV:594202-594627 ( 33) ATAAATTCTAACCACTGAACCACTTGCGC 1 chrXIV:96021-96523 ( 62) TGGGATGATAACCACTACACTAACCGCCC 1 chrVII:779406-779832 ( 47) TGGGATGATAACCACTACACTAACCGCCC 1 chrXVI:769014-769533 ( 51) GAACGCTCTACCAACTGAGCTAACAAGGA 1 chrVII:115293-115746 ( 19) GAACGCTCTACCAACTGAGCTAACAAGGA 1 chrIV:768287-768931 ( 40) GTAACCGTCAACAACTTCACCAAAGACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDHGSCTTWAACCACTMRRCCAHNNRVSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 34632 bayes= 10.1058 E= 1.8e-063 -314 -18 189 -214 44 -150 30 -14 -14 50 -150 32 -56 -50 174 -1150 -156 95 130 -314 -56 158 -1150 -56 -214 -150 8 111 -82 -50 -1150 118 18 -250 -250 95 103 -1150 -18 -56 132 30 -1150 -1150 -1150 235 -1150 -1150 -56 189 -150 -1150 156 -1150 -92 -1150 -1150 235 -1150 -1150 -1150 -1150 -1150 172 56 30 8 -156 18 8 120 -1150 86 -1150 120 -1150 -1150 235 -1150 -1150 -1150 189 -1150 -14 172 -1150 -1150 -1150 32 108 -1150 -56 -14 8 -18 18 -56 50 50 -33 32 -150 149 -1150 32 82 8 -214 -156 130 82 -214 -156 220 -1150 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDHGSCTTWAACCACTMRRCCAHNNRVSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 29 E= 1.8e-063 0.034483 0.172414 0.724138 0.068966 0.413793 0.068966 0.241379 0.275862 0.275862 0.275862 0.068966 0.379310 0.206897 0.137931 0.655172 0.000000 0.103448 0.379310 0.482759 0.034483 0.206897 0.586207 0.000000 0.206897 0.068966 0.068966 0.206897 0.655172 0.172414 0.137931 0.000000 0.689655 0.344828 0.034483 0.034483 0.586207 0.620690 0.000000 0.172414 0.206897 0.758621 0.241379 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.206897 0.724138 0.068966 0.000000 0.896552 0.000000 0.103448 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.448276 0.241379 0.206897 0.103448 0.344828 0.206897 0.448276 0.000000 0.551724 0.000000 0.448276 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.724138 0.000000 0.275862 1.000000 0.000000 0.000000 0.000000 0.379310 0.413793 0.000000 0.206897 0.275862 0.206897 0.172414 0.344828 0.206897 0.275862 0.275862 0.241379 0.379310 0.068966 0.551724 0.000000 0.379310 0.344828 0.206897 0.068966 0.103448 0.482759 0.344828 0.068966 0.103448 0.896552 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GDHGSCTTWAACCACTMRRCCAHNNRVSC MEME-2 regular expression -------------------------------------------------------------------------------- G[ATG][TAC][GA][GC][CAT][TG]T[TA][AT][AC]C[CA]ACT[ACG][GAC][AG]C[CT]A[CAT][TAC][CGTA][GA][ACG][CG]C -------------------------------------------------------------------------------- Time 429.79 secs. ******************************************************************************** ******************************************************************************** MOTIF ACAYCCRTACATH MEME-3 width = 13 sites = 57 llr = 644 E-value = 2.8e-044 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACAYCCRTACATH MEME-3 Description -------------------------------------------------------------------------------- Simplified A 619:::4:7:8:3 pos.-specific C 1915a9:2:a235 probability G 2:::::6:3:::: matrix T 1::5:1:8:::72 bits 2.4 2.1 ** * 1.9 ** * 1.6 * ** * Relative 1.4 * ** * Entropy 1.2 ** ** * ** (16.3 bits) 0.9 *********** 0.7 *********** 0.5 ************ 0.2 ************* 0.0 ------------- Multilevel ACATCCGTACATC consensus C A G CA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAYCCRTACATH MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------- chrIV:229479-229811 + 59 3.37e-08 CTTACACAAA ACATCCGTACATC AGAAGGATTA chrVIII:382893-383353 - 28 7.41e-08 AACATCCGAT ACACCCATACATC ATGAAAATAA chrXII:922056-922630 + 52 8.77e-08 TTTGAAATTG ACACCCGTACATA TTCCAATTCT chrVI:64949-65362 - 62 8.77e-08 CTCCATGTCA ACACCCGTACATA TTCAGAGATA chrXII:818790-819214 + 47 2.25e-07 TACCTTTCCA ACATCCGTACATA TTGATTATTG chrXII:241608-242028 + 39 2.25e-07 TTCCCTTTTT ACATCCGTACATA TAAAATGTAA chrXII:713128-713595 - 61 2.25e-07 GCAGACTATC ACATCCGTACATA TGTATAAAAA chrXIII:731990-732429 + 47 2.59e-07 AAGACATAAT ACATCCGCACATC GCGCATGTGT chrVIII:125883-126334 + 44 3.31e-07 AGACGTTAAT GCATCCGTACACC TACATCTTTA chrXVI:76317-76763 - 53 3.95e-07 GACTGTATTT TCACCCGTACATC CACGGATGTG chrXII:522178-522418 + 55 3.95e-07 TATTAACTAA ACATCCGTACACA AAAGGTTTTC chrVII:788300-788757 - 51 3.95e-07 ATTCCTTACA ACATCCGTGCATA CTCTAAACCC chrX:703230-703330 - 56 5.88e-07 ACGCGTGGAA GCACCCATGCATC CACTATTTAT chrVII:254099-254575 - 60 6.81e-07 ATTTGAGGTT GCACCCGTGCATA TTGAAAGATG chrIV:392537-392872 - 6 6.81e-07 AATAATAATG ACACCCATGCATA GTGAT chrXII:1064779-1065396 - 23 7.84e-07 ACACCACACC ACACCCACACACC CACACACCAC chrXIII:5228-5897 + 63 7.84e-07 CCCACACACC ACACCCACACACC CTAACACAAT chrII:415473-415897 - 48 8.91e-07 TTCCTTTTTT ACACCCATGCATT TTGTCATCCA chrII:44978-45380 + 41 1.03e-06 AGACAATCAT GCATCCGTACATT CTATGTATGT chrXV:167961-168450 - 33 1.18e-06 GCGGCTTTAA ACACCCGTGCCTA TATTTAAGTT chrIV:130551-131001 - 23 1.33e-06 ACATATACAA ACATCCGCACATT TTATAGCTTT chrVII:534781-535247 - 40 1.49e-06 TTTTATATAT GCATCCGTGCATT TGTGTAACCC chrV:53508-53953 + 39 1.65e-06 TCTTTGTTTG ACACCCACACATA TTTGGTGTTC chrXVI:406126-406587 + 65 1.65e-06 ATGAAGTTTA ACATCCGTACCTT TCCACCTCCA chrVI:221726-222113 - 51 1.65e-06 AAGACTTTTT TCACCCGTACATT TTTAACACCC chrXII:498489-498886 + 36 1.81e-06 TTTCCTGTTT ACCTCCGTGCATC CTGTAAGGAA chrV:423066-423502 + 38 1.81e-06 CTGCATATTT ACCTCCGTACACC TTCTACACCC chrIV:341244-341655 - 44 1.81e-06 GTCTACTTTT CCATCCGTACATT TTAACACCCA chrVI:95450-95881 - 21 2.01e-06 AATCAGTCAT GCACCCACACACC GGACTGCGTA chrXII:1028210-1028612 + 37 2.19e-06 AGACAAAATA TCACCCATGCACC AAAATGTATG chrVIII:148915-149297 - 26 2.19e-06 CCATACATTT TCACCCATGCACC ATTGGATTAT chrXI:618792-619235 - 48 2.64e-06 AATACTATTT CCATCCGTGCCTC TAATAGATTT chrXII:65390-65666 - 22 2.64e-06 GGAGCATCAC ACAGCCGTACATC CGGCCACACA chrIII:163436-163918 - 20 2.64e-06 TTAAATTACC GCACCCACGCACC CAACCGCGGC chrII:605704-606161 + 34 2.92e-06 TGACAGTTTT ACACCTGTACATC TTCACCATCA chrXVI:188596-188961 + 62 2.92e-06 GTGACTTTTA AAACCCATGCATC GGTTACTATG chrX:75322-75422 - 22 3.24e-06 ATTCCTCTAT ACATCCACACCTC ACTATTTGAA chrV:85095-85491 + 57 3.86e-06 GTGATATCAT CCACCCATACCCC TCGATGTATT chrII:477003-477482 + 23 3.86e-06 TCAGCAAACT ACCTCCGTACATT CATGTTGCAC chrIV:835731-836240 + 16 3.86e-06 AACGGCGCGC ACACCCACGCCCC GCAACCGCAC chrXIII:124299-124737 - 45 4.23e-06 GACTGCTATT AAATCCGTACATT ATTAAAATGT chrII:60822-61287 - 69 5.31e-06 GACTACATTA ACATCTGTACACC CCCAACTGCT chrIV:217165-217527 + 18 5.74e-06 GCCCTGCTTT GAACCCGTACATT TTATTCTATA chrX:73356-73456 + 33 6.19e-06 ACATCATTGT ACATCCTTGCACC ACACTGAAAA chrXV:216215-216711 + 46 7.25e-06 GAACATCCGA GCACCCGCGCCTT CCTCAACCCA chrXV:253774-254147 - 68 7.89e-06 AAAACTTTTT TAATCCGTACACC GCGCGTATAA chrIV:307987-308406 + 78 7.89e-06 ATTTCCTGTT ACATCCTTACATA TATGCAGGCA chrIII:178304-178688 - 26 9.94e-06 GACTTAATAA ACATCTGTACATT TTACTACTCT chrIX:316085-316628 + 46 1.07e-05 TTTCAGACTA GAACCCATACATT ATTTTACAAA chrXI:25639-26605 + 46 1.23e-05 TAAGGGTTAT ACATCCATAGATC AGTTCCGTGG chrXIV:495163-495621 - 53 1.41e-05 TTGACATATT CAATCCGTACACT ATACACACCC chrX:651225-651325 + 65 1.62e-05 TAATTATTCT TAACCCATACATA TTTGTCTCAA chrXV:779673-780127 + 53 1.85e-05 ATTTTTTCAC CCCCCCATACCCC ACATACCTTT chrXII:919680-920134 - 59 2.38e-05 CATAATAAAA AAATCCATGCCCA ATATTTCTGA chrXV:494402-494604 + 67 2.52e-05 TATATATAAT ACACGCACACACA CCAACACAAA chrVII:782432-783076 + 72 3.17e-05 GAAAGTATTC CCATGCATACATA TTATATTCCA chrXV:506079-506314 + 81 4.79e-05 CTAAGCGGTG TCGTCCATGCATA TATCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAYCCRTACATH MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:229479-229811 3.4e-08 58_[+3]_29 chrVIII:382893-383353 7.4e-08 27_[-3]_60 chrXII:922056-922630 8.8e-08 51_[+3]_36 chrVI:64949-65362 8.8e-08 61_[-3]_26 chrXII:818790-819214 2.2e-07 46_[+3]_41 chrXII:241608-242028 2.2e-07 38_[+3]_49 chrXII:713128-713595 2.2e-07 60_[-3]_27 chrXIII:731990-732429 2.6e-07 46_[+3]_41 chrVIII:125883-126334 3.3e-07 43_[+3]_44 chrXVI:76317-76763 3.9e-07 52_[-3]_35 chrXII:522178-522418 3.9e-07 54_[+3]_33 chrVII:788300-788757 3.9e-07 50_[-3]_37 chrX:703230-703330 5.9e-07 55_[-3]_32 chrVII:254099-254575 6.8e-07 59_[-3]_28 chrIV:392537-392872 6.8e-07 5_[-3]_82 chrXII:1064779-1065396 7.8e-07 22_[-3]_65 chrXIII:5228-5897 7.8e-07 62_[+3]_25 chrII:415473-415897 8.9e-07 47_[-3]_40 chrII:44978-45380 1e-06 40_[+3]_47 chrXV:167961-168450 1.2e-06 32_[-3]_55 chrIV:130551-131001 1.3e-06 22_[-3]_65 chrVII:534781-535247 1.5e-06 39_[-3]_48 chrV:53508-53953 1.6e-06 38_[+3]_49 chrXVI:406126-406587 1.6e-06 64_[+3]_23 chrVI:221726-222113 1.6e-06 50_[-3]_37 chrXII:498489-498886 1.8e-06 35_[+3]_52 chrV:423066-423502 1.8e-06 37_[+3]_50 chrIV:341244-341655 1.8e-06 43_[-3]_44 chrVI:95450-95881 2e-06 20_[-3]_67 chrXII:1028210-1028612 2.2e-06 36_[+3]_51 chrVIII:148915-149297 2.2e-06 25_[-3]_62 chrXI:618792-619235 2.6e-06 47_[-3]_40 chrXII:65390-65666 2.6e-06 21_[-3]_66 chrIII:163436-163918 2.6e-06 19_[-3]_68 chrII:605704-606161 2.9e-06 33_[+3]_54 chrXVI:188596-188961 2.9e-06 61_[+3]_26 chrX:75322-75422 3.2e-06 21_[-3]_66 chrV:85095-85491 3.9e-06 56_[+3]_31 chrII:477003-477482 3.9e-06 22_[+3]_65 chrIV:835731-836240 3.9e-06 15_[+3]_72 chrXIII:124299-124737 4.2e-06 44_[-3]_43 chrII:60822-61287 5.3e-06 68_[-3]_19 chrIV:217165-217527 5.7e-06 17_[+3]_70 chrX:73356-73456 6.2e-06 32_[+3]_55 chrXV:216215-216711 7.3e-06 45_[+3]_42 chrXV:253774-254147 7.9e-06 67_[-3]_20 chrIV:307987-308406 7.9e-06 77_[+3]_10 chrIII:178304-178688 9.9e-06 25_[-3]_62 chrIX:316085-316628 1.1e-05 45_[+3]_42 chrXI:25639-26605 1.2e-05 45_[+3]_42 chrXIV:495163-495621 1.4e-05 52_[-3]_35 chrX:651225-651325 1.6e-05 64_[+3]_23 chrXV:779673-780127 1.9e-05 52_[+3]_35 chrXII:919680-920134 2.4e-05 58_[-3]_29 chrXV:494402-494604 2.5e-05 66_[+3]_21 chrVII:782432-783076 3.2e-05 71_[+3]_16 chrXV:506079-506314 4.8e-05 80_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAYCCRTACATH MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACAYCCRTACATH width=13 seqs=57 chrIV:229479-229811 ( 59) ACATCCGTACATC 1 chrVIII:382893-383353 ( 28) ACACCCATACATC 1 chrXII:922056-922630 ( 52) ACACCCGTACATA 1 chrVI:64949-65362 ( 62) ACACCCGTACATA 1 chrXII:818790-819214 ( 47) ACATCCGTACATA 1 chrXII:241608-242028 ( 39) ACATCCGTACATA 1 chrXII:713128-713595 ( 61) ACATCCGTACATA 1 chrXIII:731990-732429 ( 47) ACATCCGCACATC 1 chrVIII:125883-126334 ( 44) GCATCCGTACACC 1 chrXVI:76317-76763 ( 53) TCACCCGTACATC 1 chrXII:522178-522418 ( 55) ACATCCGTACACA 1 chrVII:788300-788757 ( 51) ACATCCGTGCATA 1 chrX:703230-703330 ( 56) GCACCCATGCATC 1 chrVII:254099-254575 ( 60) GCACCCGTGCATA 1 chrIV:392537-392872 ( 6) ACACCCATGCATA 1 chrXII:1064779-1065396 ( 23) ACACCCACACACC 1 chrXIII:5228-5897 ( 63) ACACCCACACACC 1 chrII:415473-415897 ( 48) ACACCCATGCATT 1 chrII:44978-45380 ( 41) GCATCCGTACATT 1 chrXV:167961-168450 ( 33) ACACCCGTGCCTA 1 chrIV:130551-131001 ( 23) ACATCCGCACATT 1 chrVII:534781-535247 ( 40) GCATCCGTGCATT 1 chrV:53508-53953 ( 39) ACACCCACACATA 1 chrXVI:406126-406587 ( 65) ACATCCGTACCTT 1 chrVI:221726-222113 ( 51) TCACCCGTACATT 1 chrXII:498489-498886 ( 36) ACCTCCGTGCATC 1 chrV:423066-423502 ( 38) ACCTCCGTACACC 1 chrIV:341244-341655 ( 44) CCATCCGTACATT 1 chrVI:95450-95881 ( 21) GCACCCACACACC 1 chrXII:1028210-1028612 ( 37) TCACCCATGCACC 1 chrVIII:148915-149297 ( 26) TCACCCATGCACC 1 chrXI:618792-619235 ( 48) CCATCCGTGCCTC 1 chrXII:65390-65666 ( 22) ACAGCCGTACATC 1 chrIII:163436-163918 ( 20) GCACCCACGCACC 1 chrII:605704-606161 ( 34) ACACCTGTACATC 1 chrXVI:188596-188961 ( 62) AAACCCATGCATC 1 chrX:75322-75422 ( 22) ACATCCACACCTC 1 chrV:85095-85491 ( 57) CCACCCATACCCC 1 chrII:477003-477482 ( 23) ACCTCCGTACATT 1 chrIV:835731-836240 ( 16) ACACCCACGCCCC 1 chrXIII:124299-124737 ( 45) AAATCCGTACATT 1 chrII:60822-61287 ( 69) ACATCTGTACACC 1 chrIV:217165-217527 ( 18) GAACCCGTACATT 1 chrX:73356-73456 ( 33) ACATCCTTGCACC 1 chrXV:216215-216711 ( 46) GCACCCGCGCCTT 1 chrXV:253774-254147 ( 68) TAATCCGTACACC 1 chrIV:307987-308406 ( 78) ACATCCTTACATA 1 chrIII:178304-178688 ( 26) ACATCTGTACATT 1 chrIX:316085-316628 ( 46) GAACCCATACATT 1 chrXI:25639-26605 ( 46) ACATCCATAGATC 1 chrXIV:495163-495621 ( 53) CAATCCGTACACT 1 chrX:651225-651325 ( 65) TAACCCATACATA 1 chrXV:779673-780127 ( 53) CCCCCCATACCCC 1 chrXII:919680-920134 ( 59) AAATCCATGCCCA 1 chrXV:494402-494604 ( 67) ACACGCACACACA 1 chrVII:782432-783076 ( 72) CCATGCATACATA 1 chrXV:506079-506314 ( 81) TCGTCCATGCATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAYCCRTACATH MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 13 n= 42328 bayes= 10.7716 E= 2.8e-044 97 -89 -16 -131 -112 213 -1248 -1248 158 -148 -348 -1248 -1248 128 -348 74 -1248 230 -248 -1248 -1248 228 -1248 -253 41 -1248 152 -311 -1248 -2 -1248 141 117 -1248 69 -1248 -1248 233 -348 -1248 147 -31 -1248 -1248 -1248 69 -1248 117 -3 122 -1248 -31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAYCCRTACATH MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 13 nsites= 57 E= 2.8e-044 0.596491 0.105263 0.175439 0.122807 0.140351 0.859649 0.000000 0.000000 0.912281 0.070175 0.017544 0.000000 0.000000 0.473684 0.017544 0.508772 0.000000 0.964912 0.035088 0.000000 0.000000 0.947368 0.000000 0.052632 0.403509 0.000000 0.561404 0.035088 0.000000 0.192982 0.000000 0.807018 0.684211 0.000000 0.315789 0.000000 0.000000 0.982456 0.017544 0.000000 0.842105 0.157895 0.000000 0.000000 0.000000 0.315789 0.000000 0.684211 0.298246 0.456140 0.000000 0.245614 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAYCCRTACATH MEME-3 regular expression -------------------------------------------------------------------------------- ACA[TC]CC[GA]T[AG]CA[TC][CAT] -------------------------------------------------------------------------------- Time 632.16 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:23682-25814 5.18e-01 100 chrVIII:372537-373375 8.60e-01 100 chrXVI:811790-812434 8.08e-01 100 chrVIII:161604-162727 8.92e-01 100 chrIV:1170111-1170361 4.17e-01 100 chrXV:167961-168450 2.92e-04 32_[-3(1.18e-06)]_6_[+3(2.99e-05)]_\ 36 chrVII:779406-779832 1.01e-05 46_[-2(3.51e-08)]_25 chrIX:25427-28589 6.89e-01 100 chrIV:181007-181928 6.86e-01 100 chrXV:308774-309167 1.51e-01 100 chrXIII:887249-889345 7.03e-01 100 chrXVI:692710-693364 1.77e-01 100 chrXII:201685-202508 1.36e-01 100 chrIV:341244-341655 4.23e-03 43_[-3(1.81e-06)]_44 chrVII:825516-827115 1.59e-01 100 chrVI:221726-222113 8.42e-03 50_[-3(1.65e-06)]_37 chrX:139131-139231 1.34e-01 64_[+1(8.52e-05)]_6 chrIV:886163-886807 3.30e-01 100 chrIV:946068-946567 7.32e-03 44_[-2(1.03e-05)]_27 chrXVI:188596-188961 1.09e-03 61_[+3(2.92e-06)]_26 chrIV:116678-117610 5.25e-01 100 chrIV:381905-382369 4.78e-01 100 chrXIV:173927-174319 7.36e-01 100 chrXII:930637-931148 4.76e-02 100 chrXV:81372-82773 4.79e-01 100 chrXII:263435-264079 2.01e-01 100 chrXV:29181-33749 2.71e-01 100 chrIV:1236587-1238459 4.79e-01 100 chrXIV:61744-62388 9.12e-01 100 chrVIII:237630-238118 2.33e-01 100 chrXII:810638-815988 5.09e-01 100 chrXIII:5228-5897 1.04e-03 30_[+3(7.84e-07)]_6_[+3(7.84e-07)]_\ [+3(7.84e-07)]_25 chrXII:636798-640300 9.10e-01 100 chrXVI:577231-579459 4.85e-01 100 chrIII:168173-168620 9.55e-01 100 chrXI:109664-110308 9.44e-01 100 chrXVI:404992-405673 9.91e-01 100 chrXV:778612-779256 6.47e-01 100 chrXV:305253-305675 2.90e-01 100 chrIX:23456-25478 7.31e-01 100 chrXV:723582-725126 1.48e-01 100 chrXVI:819306-819877 1.84e-03 5_[+1(1.85e-05)]_65 chrIX:296117-296312 1.40e-01 100 chrVII:341171-341388 9.04e-01 100 chrIV:742137-742781 8.31e-01 100 chrV:78222-79727 6.52e-01 100 chrXII:951299-953627 1.53e-01 100 chrXIII:699882-700228 8.06e-01 100 chrXIII:698716-698956 4.16e-01 100 chrVII:1057237-1057584 7.95e-01 100 chrIV:835731-836240 6.57e-03 15_[+3(3.86e-06)]_72 chrXIII:120113-120757 5.34e-01 100 chrVI:224172-224620 1.34e-01 100 chrXVI:514365-516898 9.31e-01 100 chrXVI:109061-114572 5.86e-01 100 chrXVI:252144-252788 6.47e-02 26_[-2(2.60e-05)]_45 chrVII:805048-805369 9.66e-01 100 chrII:394199-397836 2.44e-01 100 chrX:541311-541411 1.57e-02 30_[-2(1.75e-05)]_41 chrII:477003-477482 9.71e-03 22_[+3(3.86e-06)]_6_[+3(4.23e-06)]_\ 46 chrIV:490408-491291 9.83e-01 100 chrXII:1017897-1018720 4.79e-01 100 chrIX:121543-122187 2.07e-01 100 chrXIII:671700-673832 7.11e-01 100 chrXI:109521-109924 8.90e-01 100 chrXII:837570-839367 5.51e-01 100 chrV:66986-68760 3.70e-01 100 chrVIII:471721-472007 9.40e-01 100 chrXIV:62059-62703 9.07e-01 100 chrXVI:122559-125676 4.54e-01 100 chrVII:788300-788757 2.48e-03 50_[-3(3.95e-07)]_37 chrXV:1015286-1015745 8.29e-01 100 chrXIII:183760-184167 1.54e-07 26_[+2(9.09e-12)]_45 chrXII:522818-523462 1.39e-01 100 chrXIII:702472-703593 1.87e-01 100 chrIV:915566-916319 5.13e-01 100 chrIV:720831-721437 5.28e-01 100 chrVII:364261-364424 6.60e-01 100 chrXI:519616-521063 3.43e-01 100 chrXV:963159-966345 9.84e-01 100 chrVII:970546-973052 5.57e-01 100 chrV:397005-397649 5.37e-01 100 chrXIV:654484-659771 9.93e-01 100 chrXII:899324-899715 3.80e-01 100 chrXII:499005-499753 2.14e-01 100 chrXIII:119992-120306 1.18e-01 100 chrXII:349004-350903 8.78e-01 100 chrX:519418-519518 4.11e-01 100 chrVII:1057594-1057841 7.49e-01 100 chrXI:217663-218664 3.10e-01 100 chrIII:259993-260637 1.46e-01 100 chrXII:713128-713595 1.43e-03 60_[-3(2.25e-07)]_27 chrII:112385-113029 5.69e-01 100 chrIV:809090-810520 1.76e-02 100 chrX:378160-378260 6.32e-13 63_[+1(4.49e-11)]_7 chrV:138457-139985 2.92e-01 100 chrX:120521-120621 1.90e-01 100 chrXVI:753602-754246 6.72e-02 100 chrVII:148120-148764 1.19e-01 100 chrVII:372877-373521 5.84e-01 100 chrVII:545473-545637 9.08e-01 100 chrXI:100828-107022 6.03e-01 100 chrIII:191716-192360 6.72e-01 100 chrXVI:280707-281530 8.50e-02 100 chrV:441799-442603 3.29e-01 100 chrXVI:303211-304321 8.00e-01 100 chrXVI:371973-373180 4.23e-01 100 chrVI:137333-137751 2.84e-14 19_[-1(2.96e-12)]_51 chrXII:648532-650915 8.17e-01 100 chrVII:440484-442816 4.98e-01 100 chrVII:663945-664319 6.96e-01 100 chrVII:479133-482925 2.22e-02 100 chrIII:200945-201589 1.25e-02 16_[+2(3.31e-05)]_55 chrIII:57253-58356 5.72e-01 100 chrXI:558586-559230 8.31e-02 100 chrXIII:362869-363325 1.73e-01 100 chrXII:1064779-1065396 8.10e-05 1_[-3(2.19e-06)]_[-3(7.84e-07)]_28_\ [-3(7.84e-07)]_13_[-3(6.19e-06)]_6 chrIII:191919-192563 5.74e-01 100 chrVII:1020010-1020594 5.01e-02 100 chrVIII:543476-543795 7.37e-01 100 chrIV:392537-392872 1.69e-03 5_[-3(6.81e-07)]_82 chrXIV:402348-402836 9.26e-01 100 chrXV:1015286-1016037 4.86e-01 100 chrXII:241608-242028 1.40e-03 38_[+3(2.25e-07)]_8_[+3(7.25e-06)]_\ 28 chrIV:130551-131001 2.22e-03 22_[-3(1.33e-06)]_65 chrVI:64949-65362 6.50e-04 61_[-3(8.77e-08)]_26 chrXII:95315-96046 2.54e-02 100 chrII:413777-414354 9.89e-02 100 chrVII:611739-612855 6.86e-01 100 chrV:299243-301909 6.68e-02 [+1(8.20e-05)]_70 chrXV:619718-624690 4.80e-01 100 chrV:529372-529640 7.42e-01 100 chrVIII:119784-121314 1.86e-01 100 chrVII:183636-184280 3.70e-01 100 chrII:234751-235621 5.82e-01 100 chrXII:710690-710907 6.76e-01 100 chrVII:727673-728172 8.22e-01 100 chrVIII:382893-383353 3.79e-04 27_[-3(7.41e-08)]_60 chrII:169184-169558 2.64e-01 100 chrIV:655928-656683 9.66e-01 100 chrXVI:532608-533469 7.70e-01 100 chrX:411122-411222 8.24e-01 100 chrVII:277757-278768 9.40e-01 100 chrII:556853-558541 7.03e-01 100 chrXVI:868551-868961 7.28e-01 100 chrXII:919254-919838 5.44e-01 100 chrXIII:507206-508699 2.73e-01 100 chrX:663803-663903 6.78e-01 100 chrVII:364963-365607 6.90e-01 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chrXIII:368550-369191 6.55e-01 100 chrXII:734606-735007 1.84e-09 45_[-2(2.92e-11)]_26 chrIV:161782-162426 4.16e-01 100 chrXIV:442790-443314 8.43e-08 3_[-2(2.20e-11)]_68 chrXII:498489-498886 1.26e-02 35_[+3(1.81e-06)]_52 chrII:118871-119135 1.09e-01 100 chrVII:541466-542124 8.44e-01 100 chrXVI:64775-65307 1.80e-01 100 chrX:209045-209145 5.21e-01 100 chrVII:254099-254575 3.58e-03 40_[+3(4.56e-06)]_6_[-3(6.81e-07)]_\ 28 chrXVI:396081-396725 1.47e-02 100 chrXIII:372322-372721 2.16e-05 18_[+2(1.22e-09)]_53 chrXV:30-344 5.50e-02 100 chrII:81859-82721 7.95e-01 100 chrXVI:165161-165468 9.20e-01 100 chrX:75322-75422 1.14e-02 21_[-3(3.24e-06)]_29_[-3(1.14e-05)]_\ 24 chrVIII:290664-292197 1.62e-01 100 chrXII:569075-570927 7.62e-01 100 chrXI:591203-591803 5.84e-01 100 chrIV:1172485-1173129 1.52e-01 100 chrVIII:34421-35983 9.37e-01 100 chrXIII:731990-732429 1.87e-03 46_[+3(2.59e-07)]_41 chrV:335795-336439 8.32e-01 100 chrIV:355170-356707 2.52e-01 100 chrVII:534781-535247 2.60e-03 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chrXV:896537-897617 1.78e-01 100 chrXII:784148-784582 4.24e-06 38_[-2(3.49e-10)]_33 chrVII:57732-59051 8.80e-01 100 chrVII:372615-373259 6.54e-01 100 chrXV:725082-725743 6.26e-01 100 chrXVI:749164-749442 3.65e-01 100 chrXII:368967-370231 9.95e-01 100 chrIV:884156-884616 6.56e-06 24_[-2(6.65e-10)]_47 chrVII:846752-847468 1.56e-01 100 chrIV:218065-218709 6.75e-01 100 chrVI:133856-134117 5.63e-01 100 chrVII:612847-613862 7.48e-01 100 chrIV:434030-434557 2.25e-12 46_[-1(3.60e-12)]_24 chrII:563026-563659 9.38e-01 100 chrII:59798-60442 4.79e-01 100 chrII:231630-231907 8.93e-01 100 chrVII:806116-807079 2.28e-01 100 chrXV:780038-780850 4.21e-01 100 chrXI:337256-337563 5.01e-01 100 chrXII:628164-628673 1.69e-07 14_[-2(2.20e-11)]_57 chrIV:340587-340766 7.24e-02 100 chrXV:113615-113999 2.06e-12 61_[+1(3.60e-12)]_9 chrIII:137822-139204 7.73e-01 100 chrXV:113765-114409 7.87e-01 100 chrIII:59655-59993 9.08e-01 100 chrIV:802580-803025 6.83e-06 21_[+2(3.39e-09)]_50 chrXV:543229-543504 2.18e-01 100 chrV:304218-306233 5.89e-01 100 chrXIV:659645-660929 2.37e-01 100 chrXII:47675-48339 2.07e-02 19_[+2(2.08e-05)]_52 chrVII:117271-117915 7.66e-01 100 chrXIV:102497-102910 7.62e-06 62_[-2(9.87e-09)]_9 chrVIII:103856-104262 2.21e-01 100 chrXIV:413800-415144 9.93e-02 100 chrII:266183-266631 2.25e-12 37_[+1(3.60e-12)]_33 chrXV:80593-80876 5.19e-01 100 chrXIII:889959-890286 7.15e-01 100 chrX:703230-703330 3.12e-03 26_[-3(6.70e-06)]_16_[-3(5.88e-07)]_\ 32 chrXIII:251696-252394 9.62e-01 100 chrX:382925-383025 8.78e-01 100 chrIV:573156-573456 6.70e-01 100 chrXII:232087-234119 1.91e-01 100 chrXII:708077-710086 2.03e-01 100 chrXV:418442-419086 8.74e-01 100 chrII:680349-681886 6.93e-02 100 chrXII:128204-128848 6.49e-01 100 chrIII:142596-142972 7.62e-08 8_[+2(9.09e-12)]_63 chrIX:27-358 1.52e-01 100 chrIII:163436-163918 2.02e-03 19_[-3(2.64e-06)]_68 chrX:73356-73456 1.64e-02 32_[+3(6.19e-06)]_55 chrXII:1028210-1028612 8.98e-03 36_[+3(2.19e-06)]_51 chrI:76952-79603 7.60e-01 100 chrVII:344154-344927 8.12e-01 100 chrVII:876197-876721 2.67e-11 1_[+1(9.37e-15)]_69 chrXV:828088-828526 7.64e-02 100 chrXVI:193607-194649 3.63e-01 100 chrXV:281946-282450 1.28e-08 15_[-2(9.09e-12)]_56 chrXVI:353117-353539 6.02e-01 100 chrXII:545368-545864 7.57e-03 57_[+1(3.80e-05)]_13 chrXV:976141-976817 1.68e-06 8_[+1(1.01e-10)]_62 chrIV:1150701-1151141 1.31e-06 41_[+2(3.49e-10)]_30 chrIII:169332-169722 4.71e-01 100 chrIII:178304-178688 1.36e-02 25_[-3(9.94e-06)]_5_[+3(2.67e-05)]_\ 44 chrIV:229479-229811 4.51e-05 34_[+3(4.93e-06)]_11_[+3(3.37e-08)]_\ 29 chrV:85095-85491 1.25e-02 56_[+3(3.86e-06)]_31 chrII:44978-45380 5.67e-03 40_[+3(1.03e-06)]_47 chrIV:1162621-1164409 1.45e-01 100 chrXV:1005755-1006010 6.62e-01 100 chrI:88529-89173 1.98e-02 4_[+2(6.64e-06)]_67 chrXIV:19429-20073 2.65e-01 100 chrXIII:292957-293265 3.06e-01 100 chrXIV:184411-185055 7.28e-01 100 chrXVI:103524-104168 1.91e-01 100 chrIX:217928-218259 1.16e-01 100 chrII:60822-61287 1.22e-02 68_[-3(5.31e-06)]_19 chrXI:308005-308423 6.68e-13 5_[-1(4.49e-11)]_65 chrII:88062-88726 9.77e-01 100 chrIX:316085-316628 1.64e-02 45_[+3(1.07e-05)]_42 chrV:469266-469672 5.42e-13 55_[+1(4.49e-11)]_15 chrVII:399006-400537 7.52e-01 100 chrXII:507083-507765 8.23e-01 100 chrXVI:139614-140258 7.86e-01 100 chrIV:217165-217527 3.47e-03 17_[+3(5.74e-06)]_70 chrXII:935649-935973 1.34e-01 100 chrXIII:759912-762333 6.97e-01 100 chrXI:309249-309893 7.16e-01 100 chrVII:674936-675331 4.78e-01 100 chrXVI:470650-471197 8.09e-02 100 chrXIII:524950-525679 1.42e-01 100 chrIV:45080-46109 4.82e-01 100 chrV:61142-62156 9.86e-01 100 chrX:292124-292224 9.39e-02 100 chrXVI:718540-719094 7.80e-01 100 chrXIII:626330-626706 9.74e-01 100 chrIV:519534-519951 4.66e-07 50_[-2(3.90e-10)]_21 chrIV:1268897-1269548 6.07e-01 100 chrIV:937726-938370 2.34e-02 100 chrVIII:451346-453055 4.94e-01 100 chrV:339631-340977 1.46e-01 [-2(9.97e-05)]_71 chrXV:789981-790625 1.20e-01 100 chrXIII:726822-727671 6.94e-01 100 chrXIII:633026-633884 4.00e-01 100 chrVII:311020-312184 8.12e-02 100 chrXIII:892985-894271 1.04e-01 100 chrXII:791431-792075 2.43e-01 100 chrVI:162029-162415 1.04e-07 55_[-2(9.09e-12)]_16 chrVII:799575-800266 7.55e-01 100 chrVIII:230623-230825 6.61e-01 100 chrVIII:385581-386875 5.48e-01 100 chrI:166037-166590 2.64e-11 20_[+1(6.22e-11)]_50 chrVII:979531-980621 8.20e-01 100 chrXII:448511-448924 6.83e-06 25_[+2(3.39e-09)]_46 chrVI:95450-95881 3.04e-04 20_[-3(2.01e-06)]_67 chrXII:896048-896692 7.38e-01 100 chrIX:316979-317623 1.48e-01 100 chrXV:1028676-1029255 5.28e-01 100 chrXV:494402-494604 6.74e-02 66_[+3(2.52e-05)]_21 chrXV:812363-812628 8.40e-01 100 chrXIII:124299-124737 9.92e-03 26_[+3(7.89e-06)]_5_[-3(4.23e-06)]_\ 43 chrXI:25639-26605 4.35e-02 45_[+3(1.23e-05)]_42 chrVII:787302-787504 1.74e-01 100 chrX:233714-233814 3.51e-08 53_[+1(1.64e-10)]_17 chrXVI:769014-769533 1.75e-06 50_[+2(6.84e-08)]_21 chrIV:1324415-1325059 7.12e-01 100 chrIII:220354-220692 3.57e-01 100 chrXV:614011-614416 2.29e-01 100 chrVIII:148091-148436 4.02e-01 100 chrXVI:711407-711783 2.17e-01 100 chrXI:29-319 2.74e-02 21_[+2(3.88e-05)]_50 chrXVI:350008-350744 9.21e-01 100 chrIII:65909-66997 8.31e-01 100 chrXIV:502075-502974 4.45e-01 100 chrXV:487239-487664 2.84e-14 55_[+1(2.96e-12)]_15 chrXII:818790-819214 1.66e-04 46_[+3(2.25e-07)]_28_[-3(1.85e-05)] chrXIV:216465-216653 9.34e-01 100 chrXI:112853-113996 1.96e-01 100 chrXII:329998-330642 3.73e-01 100 chrXII:65390-65666 1.32e-03 21_[-3(2.64e-06)]_66 chrVII:405246-405698 1.25e-10 63_[+1(1.12e-14)]_7 chrX:385890-385990 3.83e-01 100 chrXV:506079-506314 5.68e-02 80_[+3(4.79e-05)]_7 chrXIII:504673-505178 4.85e-08 19_[-2(2.20e-11)]_52 chrXVI:646121-646363 4.35e-01 100 chrXIII:163068-163995 8.08e-01 100 chrXVI:743120-743764 1.64e-01 100 chrXIII:753436-754080 9.40e-01 100 chrXIII:485053-486324 4.81e-01 100 chrXIV:495163-495621 8.73e-03 52_[-3(1.41e-05)]_35 chrII:796363-797752 4.03e-01 100 chrIII:217771-218342 5.30e-01 100 chrXV:253774-254147 1.99e-02 67_[-3(7.89e-06)]_20 chrXV:254423-254920 4.29e-01 100 chrXV:977034-977543 4.10e-01 100 chrXI:618792-619235 5.50e-03 47_[-3(2.64e-06)]_40 chrXII:401723-402835 9.71e-01 100 chrXV:216215-216711 6.38e-03 45_[+3(7.25e-06)]_42 chrXVI:693575-693956 4.85e-01 100 chrXIV:256539-256903 2.76e-01 100 chrXVI:192101-192745 4.85e-01 100 chrXV:594202-594627 3.38e-07 32_[+2(3.51e-08)]_39 chrVII:556044-556688 4.40e-01 100 chrXIII:356823-357125 9.83e-01 100 chrXIV:181339-181983 9.29e-01 100 chrXV:779673-780127 2.14e-02 1_[-3(8.32e-05)]_38_[+3(1.85e-05)]_\ 35 chrX:440294-440394 7.95e-01 100 chrVII:882113-883876 6.33e-01 100 chrXII:1038636-1040063 6.21e-02 100 chrVIII:160457-160656 8.03e-01 100 chrX:374277-374377 1.13e-10 52_[-1(1.12e-14)]_18 chrII:373491-375537 5.62e-01 100 chrIV:1167268-1167585 8.72e-01 100 chrXI:334063-334846 7.68e-01 100 chrX:419939-420039 2.89e-01 100 chrVII:279255-279899 9.25e-01 100 chrXIII:379189-379620 1.23e-01 100 chrXII:522178-522418 1.41e-03 29_[+3(9.94e-06)]_12_[+3(3.95e-07)]_\ 33 chrXVI:76317-76763 1.69e-03 52_[-3(3.95e-07)]_35 chrVII:783675-784507 5.82e-02 62_[-3(6.98e-05)]_25 chrX:651225-651325 3.01e-03 64_[+3(1.62e-05)]_23 chrXII:922056-922630 1.22e-04 25_[+3(1.14e-05)]_13_[+3(8.77e-08)]_\ 36 chrXVI:786734-787703 2.43e-01 100 chrV:420379-421023 7.31e-01 100 chrXIV:575102-575815 5.62e-01 100 chrII:605704-606161 3.34e-06 33_[+3(2.92e-06)]_28_[-3(3.35e-05)]_\ 13 chrIV:44236-44698 8.48e-01 100 chrVII:730948-731388 2.84e-14 36_[+1(2.96e-12)]_34 chrXII:1018946-1019398 1.54e-01 100 chrXVI:42694-42916 3.00e-01 100 chrXII:545023-545439 8.82e-01 100 chrVII:845427-845870 4.79e-08 50_[-2(9.09e-12)]_21 chrXV:76857-77118 9.78e-02 100 chrVIII:85185-85584 2.64e-06 8_[+2(1.22e-09)]_63 chrIV:50-369 2.26e-01 100 chrXIV:499715-500783 7.29e-01 100 chrIV:1301933-1302465 9.99e-01 100 chrX:165638-165738 9.99e-01 100 chrXIII:222600-222856 3.94e-01 100 chrXII:934585-934919 2.88e-01 100 chrVII:1048347-1049810 2.83e-01 100 chrIV:201207-201684 5.01e-01 100 chrIV:488570-489093 1.77e-08 60_[+2(3.12e-10)]_11 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************