Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.016464
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.059793
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.086184
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.021678
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.075536
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background
Finished invoke:
  name: bg  status: 0  time: 0.014313
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 956.249621
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 111.03323
Invoking:
  centrimo -seqlen 376 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.197452
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.473612
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background -primary GYAAYCDKRRGRTCMBSGGTTCGATYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.448915
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background -primary AMCCACTRVRCCAHRNVVS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.551561
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background -primary HACAYCCRTACAYCHYW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.389854
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background -primary AGAAAH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.400516
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background -primary CABACGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.263833
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background -primary CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.263348
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background -primary GCTACCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.218732
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.241466
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background -primary GGAGACCK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.224693
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background -primary CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.240197
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background -primary AAAGCGWG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.231079
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background -primary ACTGAGCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.204372
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background -primary CAGAWCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.225357
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background -primary SATCGTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.225968
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background -primary ATCTKCTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.21771
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background -primary ACACTATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo16  status: 0  time: 0.229375
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background --motif GYAAYCDKRRGRTCMBSGGTTCGATYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.227561
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background --motif AMCCACTRVRCCAHRNVVS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.218041
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background --motif HACAYCCRTACAYCHYW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.222319
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background --motif AGAAAH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.114467
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background --motif CABACGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.128856
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background --motif CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.12926
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background --motif GCTACCGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.126697
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.128306
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background --motif GGAGACCK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.129016
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background --motif CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.154901
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background --motif AAAGCGWG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.129616
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background --motif ACTGAGCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.127845
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background --motif CAGAWCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.131636
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background --motif SATCGTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.131057
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background --motif ATCTKCTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.131089
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/background --motif ACACTATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/BY4742--SWI1.fa
Finished invoke:
  name: fimo16  status: 0  time: 0.129518
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--SWI1/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.196775
Done