Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.105862
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.070043
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.087284
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.033408
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.087749
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background
Finished invoke:
  name: bg  status: 0  time: 0.027922
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 864.611143
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 108.926576
Invoking:
  centrimo -seqlen 424 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.262882
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.56443
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background -primary YYWAMCCACTVGRCCAMRNDVSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.528459
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background -primary ACAYCCRTACAYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.376577
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background -primary CCHTAACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.280431
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background -primary GGTTCGAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.262522
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.253225
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background -primary GTATGACW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.254202
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background -primary TGTTGWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.744594
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background -primary AMCGATG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.264601
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background -primary ATGWGATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.237645
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background -primary KTAGCTCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.214451
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background -primary AWGAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.399476
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background -primary TCKCCCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.237935
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background -primary CCGYGGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.221824
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background -primary CGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.248021
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background --motif YYWAMCCACTVGRCCAMRNDVSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.297818
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background --motif ACAYCCRTACAYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.286097
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background --motif CCHTAACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.195517
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background --motif GGTTCGAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.185596
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.187172
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background --motif GTATGACW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.216192
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background --motif TGTTGWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.204904
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background --motif AMCGATG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.181282
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background --motif ATGWGATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.414769
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background --motif KTAGCTCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.192375
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background --motif AWGAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.182462
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background --motif TCKCCCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.198494
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background --motif CCGYGGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.190793
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/background --motif CGCCTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/BY4742--STE12.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.201195
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--STE12/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.248566
Done