Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.299707 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.07043 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.10503 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.020188 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.0766019999999999 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background Finished invoke: name: bg status: 0 time: 0.035523 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 586.06503 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/seqs-shuffled Finished invoke: name: dreme status: 0 time: 220.059832 Invoking: centrimo -seqlen 764 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.207425 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.375586 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary AAGWWG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 1.69186 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary AVCDTC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 1.608678 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary GGTGVTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.977198 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary RDCCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 1.736876 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary CGSTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 1.568053 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary ATGGMAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.855096 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary TCVTYDWCNWYATCTTCDTCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 1.556682 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary ATTTCTTS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.690199 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary AGAAAGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.629756 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary AATTRGGT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.449074 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary CTGCTRC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.840145 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary GYTCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 1.302227 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary CCTTGDTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.493563 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary CGAYGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 1.236127 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary CAGCTGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.753707 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary CWTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 1.297922 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary CCAASAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 0.476004 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_18 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary CCAGAGGW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo18 status: 0 time: 0.354253 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_19 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary CAAKACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo19 status: 0 time: 0.818659 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_20 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary ACSGCTTC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo20 status: 0 time: 0.303152 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_21 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary AYATACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo21 status: 0 time: 0.724165 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/spamo_out_22 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -primary CCAAGTCK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml Finished invoke: name: spamo22 status: 0 time: 0.406685 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif AAGWWG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo1 status: 0 time: 0.982213 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif AVCDTC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo2 status: 0 time: 0.979506 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif GGTGVTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo3 status: 0 time: 1.049931 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif RDCCAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo4 status: 0 time: 0.977801 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif CGSTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo5 status: 0 time: 0.977205 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif ATGGMAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo6 status: 0 time: 0.975106 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif TCVTYDWCNWYATCTTCDTCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo7 status: 0 time: 1.2408 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif ATTTCTTS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo8 status: 0 time: 1.013651 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif AGAAAGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo9 status: 0 time: 0.977327 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif AATTRGGT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo10 status: 0 time: 1.015109 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif CTGCTRC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo11 status: 0 time: 0.96967 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif GYTCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo12 status: 0 time: 1.073532 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif CCTTGDTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo13 status: 0 time: 1.00369 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif CGAYGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo14 status: 0 time: 0.980067 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif CAGCTGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo15 status: 0 time: 1.013796 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif CWTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo16 status: 0 time: 0.98079 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif CCAASAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo17 status: 0 time: 1.011086 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_18 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif CCAGAGGW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo18 status: 0 time: 1.01904 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_19 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif CAAKACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo19 status: 0 time: 0.974911 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_20 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif ACSGCTTC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo20 status: 0 time: 1.002721 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_21 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif AYATACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo21 status: 0 time: 0.944062 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/fimo_out_22 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background --motif CCAAGTCK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/BY4742--RPB2.fa Finished invoke: name: fimo22 status: 0 time: 1.008435 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/summary.tsv Finished invoke: name: summary status: 0 time: 0.214903 Done