******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrXII:282653-284065 1.0000 100 chrXIII:287939-290051 1.0000 100 chrI:74908-75672 1.0000 100 chrXIV:63184-64742 1.0000 100 chrXI:100381-107148 1.0000 100 chrVII:882244-884146 1.0000 100 chrXI:109069-110588 1.0000 100 chrIX:23290-28712 1.0000 100 chrI:107622-108386 1.0000 100 chrIV:217403-218249 1.0000 100 chrXIII:632091-634860 1.0000 100 chrII:376126-378681 1.0000 100 chrXIV:442982-444506 1.0000 100 chrXII:780526-781569 1.0000 100 chrV:141633-142965 1.0000 100 chrXVI:406422-407949 1.0000 100 chrII:611829-614299 1.0000 100 chrXIV:413437-415068 1.0000 100 chrXV:899856-901385 1.0000 100 chrXIV:61797-63116 1.0000 100 chrX:171578-171678 1.0000 100 chrXIII:759462-763277 1.0000 100 chrIV:555327-556796 1.0000 100 chrIV:525319-527338 1.0000 100 chrXIV:281923-283610 1.0000 100 chrV:504600-505337 1.0000 100 chrXVI:191995-192968 1.0000 100 chrXIV:505468-507499 1.0000 100 chrV:302579-303614 1.0000 100 chrXI:126461-127225 1.0000 100 chrIV:1204154-1206577 1.0000 100 chrXII:96950-97752 1.0000 100 chrX:453208-453308 1.0000 100 chrVII:95602-97344 1.0000 100 chrVIII:385029-387051 1.0000 100 chrXV:830218-830655 1.0000 100 chrXII:728719-730788 1.0000 100 chrIV:1167811-1168575 1.0000 100 chrIV:471693-472102 1.0000 100 chrXVI:247364-247785 1.0000 100 chrV:423369-425451 1.0000 100 chrXV:722682-725771 1.0000 100 chrXV:904674-905914 1.0000 100 chrIII:48545-50343 1.0000 100 chrII:115463-115781 1.0000 100 chrXVI:64802-66839 1.0000 100 chrVII:599235-601520 1.0000 100 chrXII:950892-953733 1.0000 100 chrIV:930977-931336 1.0000 100 chrVIII:381320-382966 1.0000 100 chrV:303793-306147 1.0000 100 chrV:449404-450388 1.0000 100 chrV:85363-86733 1.0000 100 chrIV:1359715-1361215 1.0000 100 chrVIII:499544-500305 1.0000 100 chrXI:112741-114789 1.0000 100 chrX:569751-569851 1.0000 100 chrV:100642-101461 1.0000 100 chrXV:815560-816086 1.0000 100 chrV:465464-465803 1.0000 100 chrII:168224-169801 1.0000 100 chrXVI:432342-434524 1.0000 100 chrVII:846828-848509 1.0000 100 chrV:328578-329342 1.0000 100 chrIV:1079011-1080354 1.0000 100 chrXVI:155291-156055 1.0000 100 chrVII:850901-851617 1.0000 100 chrXVI:297392-298566 1.0000 100 chrXIII:55058-55518 1.0000 100 chrXI:557238-558002 1.0000 100 chrV:401320-402084 1.0000 100 chrIV:205217-205827 1.0000 100 chrV:66724-69121 1.0000 100 chrXVI:350098-350669 1.0000 100 chrXV:619487-624786 1.0000 100 chrIV:1012799-1013811 1.0000 100 chrV:406672-409323 1.0000 100 chrXII:809635-815843 1.0000 100 chrVII:453005-453205 1.0000 100 chrXVI:96083-98786 1.0000 100 chrXIII:19450-19905 1.0000 100 chrXVI:700327-700902 1.0000 100 chrVIII:374162-375141 1.0000 100 chrIV:331936-333395 1.0000 100 chrXVI:108496-114594 1.0000 100 chrV:51706-53427 1.0000 100 chrX:464256-464356 1.0000 100 chrXII:903581-904608 1.0000 100 chrVII:1020554-1021462 1.0000 100 chrXVI:251931-252440 1.0000 100 chrII:141700-142353 1.0000 100 chrXII:198524-199863 1.0000 100 chrXV:444431-446326 1.0000 100 chrIV:1401544-1403508 1.0000 100 chrX:703993-704093 1.0000 100 chrXVI:797455-797753 1.0000 100 chrXII:876205-876575 1.0000 100 chrIV:218119-218834 1.0000 100 chrXV:795911-796675 1.0000 100 chrVIII:211740-211978 1.0000 100 chrXIII:754816-755580 1.0000 100 chrXII:855657-857681 1.0000 100 chrXII:712014-713367 1.0000 100 chrXIII:625900-627037 1.0000 100 chrXIII:892946-895654 1.0000 100 chrII:83428-84418 1.0000 100 chrXIV:499394-500909 1.0000 100 chrIII:120533-122493 1.0000 100 chrXVI:882699-883110 1.0000 100 chrVII:906088-906353 1.0000 100 chrII:371995-372874 1.0000 100 chrXII:707921-710585 1.0000 100 chrXIV:253053-254293 1.0000 100 chrV:404119-404350 1.0000 100 chrIV:600578-602461 1.0000 100 chrXIV:402243-402871 1.0000 100 chrXVI:794779-796202 1.0000 100 chrVII:187316-187699 1.0000 100 chrX:701587-701687 1.0000 100 chrXII:368518-370443 1.0000 100 chrXVI:875889-876299 1.0000 100 chrVII:438827-440115 1.0000 100 chrIX:68517-69927 1.0000 100 chrXVI:74068-74901 1.0000 100 chrXII:568331-571058 1.0000 100 chrIV:1323015-1323544 1.0000 100 chrXV:797217-798820 1.0000 100 chrXVI:40765-43106 1.0000 100 chrII:606071-607556 1.0000 100 chrXII:328696-329223 1.0000 100 chrXVI:868909-869666 1.0000 100 chrVIII:491796-492248 1.0000 100 chrIII:57259-58881 1.0000 100 chrX:450895-450995 1.0000 100 chrXV:83645-84133 1.0000 100 chrXI:208088-209162 1.0000 100 chrI:71474-73761 1.0000 100 chrXII:648923-651398 1.0000 100 chrXVI:136210-136841 1.0000 100 chrXIII:251517-253086 1.0000 100 chrVII:915599-916192 1.0000 100 chrXV:882588-883910 1.0000 100 chrVIII:160338-160934 1.0000 100 chrV:306131-307598 1.0000 100 chrX:648094-648194 1.0000 100 chrXIV:697477-697780 1.0000 100 chrV:27513-29866 1.0000 100 chrX:651698-651798 1.0000 100 chrVIII:119559-121958 1.0000 100 chrXII:658489-659226 1.0000 100 chrIV:1236266-1238562 1.0000 100 chrXIII:219069-221128 1.0000 100 chrXIV:662872-663613 1.0000 100 chrX:442738-442838 1.0000 100 chrI:107826-108590 1.0000 100 chrIV:507678-509884 1.0000 100 chrXI:617531-618960 1.0000 100 chrVII:147778-149161 1.0000 100 chrVII:277332-278846 1.0000 100 chrII:604305-605868 1.0000 100 chrIV:43863-44761 1.0000 100 chrVIII:451020-453188 1.0000 100 chrXI:522797-523349 1.0000 100 chrVII:475819-478841 1.0000 100 chrXIV:229446-230990 1.0000 100 chrXII:231826-234403 1.0000 100 chrXII:347976-348876 1.0000 100 chrI:139950-140395 1.0000 100 chrX:411097-411197 1.0000 100 chrXIV:720619-723320 1.0000 100 chrIX:128064-129859 1.0000 100 chrXII:658489-659187 1.0000 100 chrVII:667363-667869 1.0000 100 chrIV:744061-744286 1.0000 100 chrXV:547794-548558 1.0000 100 chrV:510369-512260 1.0000 100 chrIV:869784-870548 1.0000 100 chrXIII:551736-553306 1.0000 100 chrXI:158417-159720 1.0000 100 chrXV:758865-759722 1.0000 100 chrXV:580255-581019 1.0000 100 chrII:138946-140385 1.0000 100 chrXII:827026-827790 1.0000 100 chrXVI:133025-133552 1.0000 100 chrVII:398485-400260 1.0000 100 chrVIII:34333-36277 1.0000 100 chrIV:1419789-1420409 1.0000 100 chrXV:757733-758663 1.0000 100 chrXVI:404691-406494 1.0000 100 chrI:65823-68012 1.0000 100 chrXVI:692643-695171 1.0000 100 chrII:483609-484014 1.0000 100 chrXV:832060-832962 1.0000 100 chrVII:699830-700594 1.0000 100 chrXIII:878646-880341 1.0000 100 chrXIII:296891-298958 1.0000 100 chrXV:380861-381911 1.0000 100 chrXIV:669556-669984 1.0000 100 chrXVI:821488-822331 1.0000 100 chrXVI:76876-77640 1.0000 100 chrXVI:480966-482092 1.0000 100 chrXIV:657560-658606 1.0000 100 chrXIII:161804-164488 1.0000 100 chrVII:364719-366188 1.0000 100 chrIV:330860-332087 1.0000 100 chrXV:1015590-1016088 1.0000 100 chrVI:225423-226117 1.0000 100 chrXVI:464547-465311 1.0000 100 chrXI:551443-552727 1.0000 100 chrXIII:886810-889328 1.0000 100 chrIV:133919-134896 1.0000 100 chrIV:369831-370595 1.0000 100 chrII:392756-395610 1.0000 100 chrXII:672950-674633 1.0000 100 chrII:426116-426515 1.0000 100 chrXV:729537-729995 1.0000 100 chrIV:200448-200651 1.0000 100 chrX:73533-73633 1.0000 100 chrIV:355088-357129 1.0000 100 chrXII:663233-665126 1.0000 100 chrXV:677776-679001 1.0000 100 chrX:75729-75829 1.0000 100 chrV:298734-302127 1.0000 100 chrXV:738675-739005 1.0000 100 chrXVI:857478-858242 1.0000 100 chrVII:876595-878275 1.0000 100 chrI:140980-141570 1.0000 100 chrX:292998-293098 1.0000 100 chrII:256100-257995 1.0000 100 chrII:88753-89648 1.0000 100 chrXII:1015217-1015560 1.0000 100 chrXVI:107674-108044 1.0000 100 chrXIV:339943-340348 1.0000 100 chrXII:540733-541759 1.0000 100 chrVII:672621-672943 1.0000 100 chrVIII:126325-127909 1.0000 100 chrXI:38429-39378 1.0000 100 chrIX:214021-214404 1.0000 100 chrVIII:104097-105514 1.0000 100 chrII:413780-415451 1.0000 100 chrXII:721512-722492 1.0000 100 chrXV:80166-83148 1.0000 100 chrII:43582-44346 1.0000 100 chrXVI:352531-353190 1.0000 100 chrV:122016-123156 1.0000 100 chrXIII:732241-733584 1.0000 100 chrV:460146-461851 1.0000 100 chrIV:1267534-1267733 1.0000 100 chrXV:159089-160914 1.0000 100 chrXV:379596-380204 1.0000 100 chrX:156084-156184 1.0000 100 chrXVI:131612-132301 1.0000 100 chrIV:1162725-1164782 1.0000 100 chrIII:137456-139489 1.0000 100 chrXIII:122855-124383 1.0000 100 chrXIII:120436-121200 1.0000 100 chrXIII:507338-507685 1.0000 100 chrII:554020-554212 1.0000 100 chrV:70165-70412 1.0000 100 chrVII:806016-807899 1.0000 100 chrXII:371036-371893 1.0000 100 chrX:160669-160769 1.0000 100 chrII:167137-167328 1.0000 100 chrVII:1048221-1050199 1.0000 100 chrXVI:153926-154503 1.0000 100 chrXI:430484-431501 1.0000 100 chrX:461152-461252 1.0000 100 chrIV:624304-625068 1.0000 100 chrIX:96610-97670 1.0000 100 chrXV:29099-33848 1.0000 100 chrXII:257567-259621 1.0000 100 chrIV:335649-336413 1.0000 100 chrXV:1027738-1028947 1.0000 100 chrXII:342321-343085 1.0000 100 chrIV:1492062-1493219 1.0000 100 chrVII:970629-974071 1.0000 100 chrVII:747792-748163 1.0000 100 chrX:519170-519270 1.0000 100 chrVI:43217-44580 1.0000 100 chrXV:720066-720575 1.0000 100 chrXV:718266-718648 1.0000 100 chrII:306948-307420 1.0000 100 chrXV:304509-306370 1.0000 100 chrXVI:306064-306277 1.0000 100 chrV:163502-164266 1.0000 100 chrIX:210550-210947 1.0000 100 chrVII:440711-443278 1.0000 100 chrXII:919249-922486 1.0000 100 chrV:413378-413784 1.0000 100 chrXVI:89681-90445 1.0000 100 chrXIV:493556-495196 1.0000 100 chrX:381161-381261 1.0000 100 chrXII:342052-342816 1.0000 100 chrXII:329794-330558 1.0000 100 chrIV:1319361-1319690 1.0000 100 chrVII:130873-131342 1.0000 100 chrXV:827956-828392 1.0000 100 chrIV:308226-310334 1.0000 100 chrX:208964-209064 1.0000 100 chrXV:91683-93104 1.0000 100 chrV:269035-270374 1.0000 100 chrVIII:410810-411813 1.0000 100 chrXVI:351447-352472 1.0000 100 chrXIII:388609-391174 1.0000 100 chrVIII:231404-231818 1.0000 100 chrVII:913900-914664 1.0000 100 chrXII:1040034-1041581 1.0000 100 chrXVI:718252-719634 1.0000 100 chrXII:636535-640356 1.0000 100 chrIV:1325070-1325464 1.0000 100 chrIII:162070-163487 1.0000 100 chrXV:109956-111093 1.0000 100 chrI:130578-132041 1.0000 100 chrIX:98082-99630 1.0000 100 chrIV:1354387-1355738 1.0000 100 chrXVI:641892-643801 1.0000 100 chrX:63338-63438 1.0000 100 chrXIII:751662-752198 1.0000 100 chrVII:373773-374499 1.0000 100 chrVII:751388-751769 1.0000 100 chrIV:915222-916451 1.0000 100 chrVII:901541-902305 1.0000 100 chrII:410124-410639 1.0000 100 chrIV:1317444-1318208 1.0000 100 chrXI:610237-611001 1.0000 100 chrV:197452-198216 1.0000 100 chrXVI:376840-377551 1.0000 100 chrXIV:198686-199450 1.0000 100 chrIII:229370-230374 1.0000 100 chrXV:311084-311358 1.0000 100 chrII:305298-305509 1.0000 100 chrXV:503607-503956 1.0000 100 chrV:545447-546891 1.0000 100 chrII:162909-164027 1.0000 100 chrVII:726766-728461 1.0000 100 chrXVI:822409-824460 1.0000 100 chrXVI:644172-645152 1.0000 100 chrVII:801186-801942 1.0000 100 chrVII:310700-312416 1.0000 100 chrXIV:302453-303835 1.0000 100 chrIII:176918-178937 1.0000 100 chrXII:545919-547556 1.0000 100 chrXVI:85537-86015 1.0000 100 chrVIII:553173-553775 1.0000 100 chrXII:498683-499839 1.0000 100 chrIV:232816-233195 1.0000 100 chrVI:222802-223972 1.0000 100 chrII:556087-558652 1.0000 100 chrI:65147-65764 1.0000 100 chrVII:541466-541867 1.0000 100 chrVII:786868-788364 1.0000 100 chrII:478766-479504 1.0000 100 chrV:138573-140619 1.0000 100 chrXV:411030-411411 1.0000 100 chrIV:1488871-1490122 1.0000 100 chrIV:155386-156060 1.0000 100 chrX:120194-120294 1.0000 100 chrX:90528-90628 1.0000 100 chrVII:124346-124674 1.0000 100 chrIII:60592-60837 1.0000 100 chrVII:474066-474657 1.0000 100 chrXIV:284279-285043 1.0000 100 chrXIII:741235-741999 1.0000 100 chrXII:1017638-1019125 1.0000 100 chrXI:217119-218792 1.0000 100 chrIV:579202-580864 1.0000 100 chrIV:322032-323794 1.0000 100 chrV:58863-59293 1.0000 100 chrXII:819107-820592 1.0000 100 chrXVI:701686-702438 1.0000 100 chrXIV:251858-252750 1.0000 100 chrXII:626418-626990 1.0000 100 chrXIII:43710-44474 1.0000 100 chrXIII:229148-229912 1.0000 100 chrXIV:500801-503038 1.0000 100 chrXIV:715841-716782 1.0000 100 chrXVI:75213-76449 1.0000 100 chrIV:808611-809503 1.0000 100 chrVII:804286-805463 1.0000 100 chrXIII:650969-653032 1.0000 100 chrX:227602-227702 1.0000 100 chrIV:927688-928064 1.0000 100 chrII:563104-564739 1.0000 100 chrIV:1080977-1081741 1.0000 100 chrIV:1328707-1330169 1.0000 100 chrXIV:216119-217164 1.0000 100 chrXVI:370825-372954 1.0000 100 chrV:60902-62052 1.0000 100 chrXII:805630-807231 1.0000 100 chrXIV:256525-256806 1.0000 100 chrIV:592058-592822 1.0000 100 chrIV:768119-769223 1.0000 100 chrXVI:812193-812769 1.0000 100 chrII:429533-430804 1.0000 100 chrXIII:701577-703454 1.0000 100 chrVII:610394-611585 1.0000 100 chrIV:591978-592431 1.0000 100 chrXV:880284-880750 1.0000 100 chrII:219686-221104 1.0000 100 chrXIII:743111-743340 1.0000 100 chrII:427645-429154 1.0000 100 chrII:373330-375975 1.0000 100 chrXIII:557396-558607 1.0000 100 chrXII:941302-941737 1.0000 100 chrIV:732857-733621 1.0000 100 chrXVI:746293-746839 1.0000 100 chrIV:542593-543357 1.0000 100 chrVII:55694-56294 1.0000 100 chrXIII:483788-486150 1.0000 100 chrVIII:225687-225989 1.0000 100 chrIX:254856-257284 1.0000 100 chrVIII:233339-233725 1.0000 100 chrXV:551850-552728 1.0000 100 chrII:144917-145782 1.0000 100 chrXIII:23587-26094 1.0000 100 chrVI:55361-56035 1.0000 100 chrX:598852-598952 1.0000 100 chrVIII:504075-505768 1.0000 100 chrXII:242003-243811 1.0000 100 chrXII:930501-932002 1.0000 100 chrXIV:232824-233588 1.0000 100 chrXVI:785886-787917 1.0000 100 chrXII:875969-876364 1.0000 100 chrXV:648355-649196 1.0000 100 chrXV:87263-88511 1.0000 100 chrVII:703516-704280 1.0000 100 chrIV:1241129-1242059 1.0000 100 chrXI:384307-384836 1.0000 100 chrXV:255999-256361 1.0000 100 chrXI:519139-521204 1.0000 100 chrVII:1057582-1058839 1.0000 100 chrXIV:87631-89848 1.0000 100 chrXII:201529-202804 1.0000 100 chrXVI:811896-812273 1.0000 100 chrXV:680282-681018 1.0000 100 chrIX:266823-267449 1.0000 100 chrII:300764-301673 1.0000 100 chrVI:52933-54962 1.0000 100 chrXVI:491972-492573 1.0000 100 chrVII:904622-904992 1.0000 100 chrXII:837455-839582 1.0000 100 chrVII:920357-922138 1.0000 100 chrXVI:797662-798043 1.0000 100 chrVII:559219-560127 1.0000 100 chrXIV:440038-440336 1.0000 100 chrV:266125-268364 1.0000 100 chrI:139344-140003 1.0000 100 chrX:150894-150994 1.0000 100 chrIV:1442765-1443130 1.0000 100 chrIV:1421518-1421854 1.0000 100 chrXII:505992-507476 1.0000 100 chrXI:126178-126488 1.0000 100 chrIV:1267327-1267712 1.0000 100 chrX:123800-123900 1.0000 100 chrVII:555579-557661 1.0000 100 chrVII:344142-345406 1.0000 100 chrV:462609-462881 1.0000 100 chrXIV:167122-167970 1.0000 100 chrXIV:655233-656411 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 459 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 45900 N= 459 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.297 C 0.203 G 0.203 T 0.297 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--RPB2/background): A 0.305 C 0.195 G 0.195 T 0.305 ******************************************************************************** ******************************************************************************** MOTIF GBTGVTGSTRNTGCT MEME-1 width = 15 sites = 68 llr = 644 E-value = 2.5e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GBTGVTGSTRNTGCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::222:1:5311:: pos.-specific C :31:31152:21:91 probability G 74:85:94:32271: matrix T 239::6::81361:8 bits 2.4 2.1 1.9 * * 1.7 * * Relative 1.4 * * Entropy 1.2 * ** * * (13.7 bits) 0.9 * ** *** *** 0.7 * *** *** *** 0.5 ********** **** 0.2 ********** **** 0.0 --------------- Multilevel GGTGGTGCTATTGCT consensus C CA G GAG sequence T A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBTGVTGSTRNTGCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrX:651698-651798 + 33 2.99e-09 CAGAGTCGGT GGTGGTGGTGCTGCT AGACGTCAAG chrIII:137456-139489 + 26 2.17e-08 TATCATCATT GGTGGTGGTATGGCT TTCACCTTCA chrX:453208-453308 - 17 6.28e-08 ATCCTCTACC GGTGCTGCTAAGGCT GTCGGTAAGG chrVII:882244-884146 - 24 6.28e-08 ATCCTCCACC GGTGCTGCTAAGGCT GTCGGTAAGG chrII:563104-564739 - 73 5.40e-07 AACCACCTCT TCTGCTGCTGCTGCT TCATCATCTT chrV:460146-461851 - 52 9.48e-07 CAACCTTGCC AGTGGTGGTGATGCT TCCGAAGGCG chrXV:29099-33848 + 70 1.09e-06 ACGAAACGGC GGTGGAGCTGTTACT AGCGATTGAG chrIV:471693-472102 + 42 1.26e-06 CTCTTTGACT GGTGAAGCTACTGCC AATGCCTTGC chrIII:120533-122493 + 36 1.44e-06 GGACAGATAA GGTGATGATAGTGCT GAGCCCACAA chrV:100642-101461 + 74 1.44e-06 GAGTGGTCTA GCTGCTGGTTTCGCT ATTGGTATTG chrXIII:886810-889328 - 60 1.64e-06 TCCGTTTGGA GTTGGTGGTAATTCT GTTGCAGCGG chrXV:882588-883910 + 57 1.64e-06 GAGAGAAGGT GTTGCTGCTATTACT GGCGTAGACA chrVI:52933-54962 - 11 1.88e-06 TTTGGATTCC GGTGATGGTGTTACT CACGTCGTTC chrXVI:811896-812273 - 27 2.13e-06 GAGTATTATA GCTGGTGCCACTGCG GAAAGAGGTA chrII:162909-164027 - 19 2.13e-06 GACCTTAAAA TCTGATGGTGTTGCT GGTCTTTACA chrX:569751-569851 + 6 2.42e-06 CTAAT GGTAGAGGTGGGGCT GGGTCAATAC chrXIII:551736-553306 + 46 2.73e-06 GAAGAAATCA GCTACTGCTGTTGCC CATGTCAAGG chrXVI:480966-482092 + 22 4.41e-06 TTCAGCATCA GCTGGAGCCTTGGCT TCGTGCTTTT chrIV:330860-332087 + 84 4.96e-06 TCTGAAGCCG GTTGATCCTATTGCT TT chrVII:364719-366188 - 30 4.96e-06 TGCTGAAAGA GCTGCTCGTAAGGCT GTATGTTAAA chrI:139344-140003 + 63 5.56e-06 CTTCCTTGCT GGCAGTGGTGTTGCT GTCTAACCAA chrX:381161-381261 + 27 5.56e-06 TATCGTTTTG GTTGGTGGTTCTACT AGAATTCCAA chrVII:310700-312416 + 60 8.66e-06 GCACCCCGGT GGTAGAGGTATGGCC GGTGGTCAAC chrVII:850901-851617 - 12 8.66e-06 TTTTATGGCA GCTGGCCCTGGCGCT CCTATGGGTG chrXI:217119-218792 + 42 9.61e-06 TTTAAGGACA GGTGCTGGTTCCTCT GTTCAACTAC chrIV:1162725-1164782 - 46 1.07e-05 TGTTGAAGAA GCTAGAGCTGCTGGT TCAGCATCAT chrII:371995-372874 - 25 1.07e-05 TTCTGAAATC GCTGCTGCTCTTGCC TCCGTTTCCC chrIV:927688-928064 + 58 1.19e-05 CAAGTATGGT TGTGGTGCCGGTGGT ACAAGAAACA chrVII:147778-149161 - 23 1.19e-05 CAGAAACATT GTTGAAGCCGCTGCC GTCAGAGATT chrIV:308226-310334 + 18 1.31e-05 AGCTACCGAT GTTGAAGCTAGAGCT GTCCAAGACA chrI:140980-141570 - 48 1.31e-05 TGAAAGATTG ATTGGTGATGCTGCT AAGAATCAAG chrXII:707921-710585 - 85 1.46e-05 T TTTGGTGGTATTGCG TTATGGGATG chrXV:722682-725771 + 73 1.46e-05 CGCCTTCAGA TCTGGTGCCGCTACT TTATTGGTTG chrIX:23290-28712 + 63 1.46e-05 TGCTTGAAAT TGAGGTGCTATTGCT ATAGTACTGA chrXIV:253053-254293 + 26 1.61e-05 AGAGTTCAAG GCTGCTGATGAAGCT TTTGCTAAGA chrXV:899856-901385 - 66 1.61e-05 GCCAAGTCTC GTTACTGGTATTTCT TGCAAAAATT chrX:442738-442838 - 73 1.78e-05 TCGGAACCTC GGTACAGCTAGCGCC AAAAGCTCTT chrXII:941302-941737 + 56 1.97e-05 TTCTCTTCAT GGTAGCGCCTATGCT TCGGTTACTT chrXII:658489-659187 + 41 1.97e-05 AGTAAGAATG GTTGACGCTAGGGGT AGTACGCCAT chrXII:658489-659226 + 22 1.97e-05 AGTAAGAATG GTTGACGCTAGGGGT AGTACGCCAT chrIX:98082-99630 - 30 2.17e-05 TCACAAGACT GCTCGTGGTAAGGCC GCTTTGGAAC chrVIII:119559-121958 - 7 2.17e-05 TCAACATACT TCTGCTGCCACTTCT GCTTGG chrXII:663233-665126 - 37 2.39e-05 TGCTGAAGAT GTTGACGGTGAAGCT CTTGCGGCTT chrVII:901541-902305 - 26 2.62e-05 TATTTCAGTC GGTTGTGCTGATGGT ACTATCAGCA chrIV:1354387-1355738 - 18 2.62e-05 AAAGGGTCCA GTTAGAGGTATTTCT TTCAAATTGC chrXVI:868909-869666 - 62 2.62e-05 TCTTGATTGG GGTGCCGCTAGAGGT TCTAACTTCA chrXIII:701577-703454 + 18 3.16e-05 TGCTGTTTCC GGTGGTGTTGATTCT ACTGTTGCAT chrXIV:198686-199450 - 45 3.16e-05 GGGAGGCACT TGTGGTGGCTATGCC TACCAGTACG chrX:160669-160769 + 23 3.16e-05 GACAGCTATC AGTGGTGCCTGTGCC ACCACGGCAT chrXII:505992-507476 + 17 3.47e-05 CTGGGCTTCC TGTGAAGCTGGTACT TATATGCGTA chrIV:579202-580864 + 35 3.47e-05 CTTTAAACAG GGTAAAGGTATTTCT TCTTCTGCTA chrXIV:302453-303835 + 18 3.47e-05 ACTAAGAGCT GCCAGAGCTAAGGCT ATGAAATTTG chrVII:672621-672943 - 11 3.80e-05 ACCAGTGACG TTTGGTGGAGGTGCT GGAATGCAAA chrXIV:657560-658606 - 36 3.80e-05 CCCAGTTGTG ACTGCTGCAGCTGCT CAAGTCTATA chrXV:619487-624786 + 79 3.80e-05 GCGTGGTTTC GGTATTGGTATGGCT TATGTCG chrXII:96950-97752 - 26 3.80e-05 TGAAAGATTG ATTGGTGACGCTGCT AAGAACCAAG chrXIV:229446-230990 - 75 4.54e-05 TTAAGTTTAT GATGAAGGTATGGCT GTTGAGATTA chrVII:726766-728461 + 60 5.42e-05 CGGTAGAAAG GGTAAAGCTAAGGGT GATATTCCAG chrVII:1048221-1050199 - 31 5.90e-05 TGCCTTGAAG GCTGCCGGTTACACT GGTCCAGTTG chrXII:342321-343085 + 45 6.43e-05 CGTAAAATAC GGTTCTGCTACCTCT AGGGATGGTA chrII:483609-484014 - 20 6.99e-05 GAACGCTTGG TTTGGCGCTATCGCG ATAGATTAAG chrVII:667363-667869 - 31 6.99e-05 GGAACCTGAT GTAGCTCCTACTGCT TGTTGTAAAG chrX:648094-648194 + 68 6.99e-05 AACAGATCCT GCTCCTGCCACTACT TTTGCCCATT chrII:429533-430804 - 60 7.59e-05 CTTGACCTCA ACTGACGCTAGTACT TTATTCTCGT chrX:519170-519270 - 16 7.59e-05 AGTCTTATTG GTCGGTGGTATGTCC AGAATGCCTA chrXIII:161804-164488 - 13 8.24e-05 ATTGCTTATC GTTGATGATAACGGT AACCTCGTTT chrII:611829-614299 - 35 8.24e-05 AAGTTGGGTC GGTGGTCGTTACTCT GTCTGGTCGG chrXIII:759462-763277 + 81 1.54e-04 CTGGTTCCGT ACCGGTGATATCGCT GAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBTGVTGSTRNTGCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:651698-651798 3e-09 32_[+1]_53 chrIII:137456-139489 2.2e-08 25_[+1]_60 chrX:453208-453308 6.3e-08 16_[-1]_69 chrVII:882244-884146 6.3e-08 23_[-1]_62 chrII:563104-564739 5.4e-07 72_[-1]_13 chrV:460146-461851 9.5e-07 51_[-1]_34 chrXV:29099-33848 1.1e-06 69_[+1]_16 chrIV:471693-472102 1.3e-06 41_[+1]_44 chrIII:120533-122493 1.4e-06 35_[+1]_50 chrV:100642-101461 1.4e-06 73_[+1]_12 chrXIII:886810-889328 1.6e-06 59_[-1]_26 chrXV:882588-883910 1.6e-06 56_[+1]_29 chrVI:52933-54962 1.9e-06 10_[-1]_75 chrXVI:811896-812273 2.1e-06 26_[-1]_59 chrII:162909-164027 2.1e-06 18_[-1]_67 chrX:569751-569851 2.4e-06 5_[+1]_80 chrXIII:551736-553306 2.7e-06 45_[+1]_40 chrXVI:480966-482092 4.4e-06 21_[+1]_64 chrIV:330860-332087 5e-06 83_[+1]_2 chrVII:364719-366188 5e-06 29_[-1]_56 chrI:139344-140003 5.6e-06 62_[+1]_23 chrX:381161-381261 5.6e-06 26_[+1]_59 chrVII:310700-312416 8.7e-06 59_[+1]_26 chrVII:850901-851617 8.7e-06 11_[-1]_74 chrXI:217119-218792 9.6e-06 41_[+1]_44 chrIV:1162725-1164782 1.1e-05 45_[-1]_40 chrII:371995-372874 1.1e-05 24_[-1]_61 chrIV:927688-928064 1.2e-05 57_[+1]_28 chrVII:147778-149161 1.2e-05 22_[-1]_63 chrIV:308226-310334 1.3e-05 17_[+1]_68 chrI:140980-141570 1.3e-05 47_[-1]_38 chrXII:707921-710585 1.5e-05 84_[-1]_1 chrXV:722682-725771 1.5e-05 72_[+1]_13 chrIX:23290-28712 1.5e-05 62_[+1]_23 chrXIV:253053-254293 1.6e-05 25_[+1]_60 chrXV:899856-901385 1.6e-05 65_[-1]_20 chrX:442738-442838 1.8e-05 72_[-1]_13 chrXII:941302-941737 2e-05 55_[+1]_30 chrXII:658489-659187 2e-05 40_[+1]_45 chrXII:658489-659226 2e-05 21_[+1]_64 chrIX:98082-99630 2.2e-05 29_[-1]_56 chrVIII:119559-121958 2.2e-05 6_[-1]_79 chrXII:663233-665126 2.4e-05 36_[-1]_49 chrVII:901541-902305 2.6e-05 25_[-1]_60 chrIV:1354387-1355738 2.6e-05 17_[-1]_68 chrXVI:868909-869666 2.6e-05 61_[-1]_24 chrXIII:701577-703454 3.2e-05 17_[+1]_68 chrXIV:198686-199450 3.2e-05 44_[-1]_41 chrX:160669-160769 3.2e-05 22_[+1]_63 chrXII:505992-507476 3.5e-05 16_[+1]_69 chrIV:579202-580864 3.5e-05 34_[+1]_51 chrXIV:302453-303835 3.5e-05 17_[+1]_68 chrVII:672621-672943 3.8e-05 10_[-1]_75 chrXIV:657560-658606 3.8e-05 35_[-1]_50 chrXV:619487-624786 3.8e-05 78_[+1]_7 chrXII:96950-97752 3.8e-05 25_[-1]_60 chrXIV:229446-230990 4.5e-05 74_[-1]_11 chrVII:726766-728461 5.4e-05 59_[+1]_26 chrVII:1048221-1050199 5.9e-05 30_[-1]_55 chrXII:342321-343085 6.4e-05 44_[+1]_41 chrII:483609-484014 7e-05 19_[-1]_66 chrVII:667363-667869 7e-05 30_[-1]_55 chrX:648094-648194 7e-05 67_[+1]_18 chrII:429533-430804 7.6e-05 59_[-1]_26 chrX:519170-519270 7.6e-05 15_[-1]_70 chrXIII:161804-164488 8.2e-05 12_[-1]_73 chrII:611829-614299 8.2e-05 34_[-1]_51 chrXIII:759462-763277 0.00015 80_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBTGVTGSTRNTGCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GBTGVTGSTRNTGCT width=15 seqs=68 chrX:651698-651798 ( 33) GGTGGTGGTGCTGCT 1 chrIII:137456-139489 ( 26) GGTGGTGGTATGGCT 1 chrX:453208-453308 ( 17) GGTGCTGCTAAGGCT 1 chrVII:882244-884146 ( 24) GGTGCTGCTAAGGCT 1 chrII:563104-564739 ( 73) TCTGCTGCTGCTGCT 1 chrV:460146-461851 ( 52) AGTGGTGGTGATGCT 1 chrXV:29099-33848 ( 70) GGTGGAGCTGTTACT 1 chrIV:471693-472102 ( 42) GGTGAAGCTACTGCC 1 chrIII:120533-122493 ( 36) GGTGATGATAGTGCT 1 chrV:100642-101461 ( 74) GCTGCTGGTTTCGCT 1 chrXIII:886810-889328 ( 60) GTTGGTGGTAATTCT 1 chrXV:882588-883910 ( 57) GTTGCTGCTATTACT 1 chrVI:52933-54962 ( 11) GGTGATGGTGTTACT 1 chrXVI:811896-812273 ( 27) GCTGGTGCCACTGCG 1 chrII:162909-164027 ( 19) TCTGATGGTGTTGCT 1 chrX:569751-569851 ( 6) GGTAGAGGTGGGGCT 1 chrXIII:551736-553306 ( 46) GCTACTGCTGTTGCC 1 chrXVI:480966-482092 ( 22) GCTGGAGCCTTGGCT 1 chrIV:330860-332087 ( 84) GTTGATCCTATTGCT 1 chrVII:364719-366188 ( 30) GCTGCTCGTAAGGCT 1 chrI:139344-140003 ( 63) GGCAGTGGTGTTGCT 1 chrX:381161-381261 ( 27) GTTGGTGGTTCTACT 1 chrVII:310700-312416 ( 60) GGTAGAGGTATGGCC 1 chrVII:850901-851617 ( 12) GCTGGCCCTGGCGCT 1 chrXI:217119-218792 ( 42) GGTGCTGGTTCCTCT 1 chrIV:1162725-1164782 ( 46) GCTAGAGCTGCTGGT 1 chrII:371995-372874 ( 25) GCTGCTGCTCTTGCC 1 chrIV:927688-928064 ( 58) TGTGGTGCCGGTGGT 1 chrVII:147778-149161 ( 23) GTTGAAGCCGCTGCC 1 chrIV:308226-310334 ( 18) GTTGAAGCTAGAGCT 1 chrI:140980-141570 ( 48) ATTGGTGATGCTGCT 1 chrXII:707921-710585 ( 85) TTTGGTGGTATTGCG 1 chrXV:722682-725771 ( 73) TCTGGTGCCGCTACT 1 chrIX:23290-28712 ( 63) TGAGGTGCTATTGCT 1 chrXIV:253053-254293 ( 26) GCTGCTGATGAAGCT 1 chrXV:899856-901385 ( 66) GTTACTGGTATTTCT 1 chrX:442738-442838 ( 73) GGTACAGCTAGCGCC 1 chrXII:941302-941737 ( 56) GGTAGCGCCTATGCT 1 chrXII:658489-659187 ( 41) GTTGACGCTAGGGGT 1 chrXII:658489-659226 ( 22) GTTGACGCTAGGGGT 1 chrIX:98082-99630 ( 30) GCTCGTGGTAAGGCC 1 chrVIII:119559-121958 ( 7) TCTGCTGCCACTTCT 1 chrXII:663233-665126 ( 37) GTTGACGGTGAAGCT 1 chrVII:901541-902305 ( 26) GGTTGTGCTGATGGT 1 chrIV:1354387-1355738 ( 18) GTTAGAGGTATTTCT 1 chrXVI:868909-869666 ( 62) GGTGCCGCTAGAGGT 1 chrXIII:701577-703454 ( 18) GGTGGTGTTGATTCT 1 chrXIV:198686-199450 ( 45) TGTGGTGGCTATGCC 1 chrX:160669-160769 ( 23) AGTGGTGCCTGTGCC 1 chrXII:505992-507476 ( 17) TGTGAAGCTGGTACT 1 chrIV:579202-580864 ( 35) GGTAAAGGTATTTCT 1 chrXIV:302453-303835 ( 18) GCCAGAGCTAAGGCT 1 chrVII:672621-672943 ( 11) TTTGGTGGAGGTGCT 1 chrXIV:657560-658606 ( 36) ACTGCTGCAGCTGCT 1 chrXV:619487-624786 ( 79) GGTATTGGTATGGCT 1 chrXII:96950-97752 ( 26) ATTGGTGACGCTGCT 1 chrXIV:229446-230990 ( 75) GATGAAGGTATGGCT 1 chrVII:726766-728461 ( 60) GGTAAAGCTAAGGGT 1 chrVII:1048221-1050199 ( 31) GCTGCCGGTTACACT 1 chrXII:342321-343085 ( 45) GGTTCTGCTACCTCT 1 chrII:483609-484014 ( 20) TTTGGCGCTATCGCG 1 chrVII:667363-667869 ( 31) GTAGCTCCTACTGCT 1 chrX:648094-648194 ( 68) GCTCCTGCCACTACT 1 chrII:429533-430804 ( 60) ACTGACGCTAGTACT 1 chrX:519170-519270 ( 16) GTCGGTGGTATGTCC 1 chrXIII:161804-164488 ( 13) GTTGATGATAACGGT 1 chrII:611829-614299 ( 35) GGTGGTCGTTACTCT 1 chrXIII:759462-763277 ( 81) ACCGGTGATATCGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBTGVTGSTRNTGCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 39474 bayes= 9.9744 E= 2.5e-006 -157 -1273 192 -92 -437 60 108 -13 -337 -173 -1273 158 -68 -272 195 -337 -38 52 127 -437 -47 -56 -1273 108 -1273 -140 225 -1273 -179 140 97 -437 -337 -27 -1273 140 75 -372 80 -121 -29 27 -3 8 -238 -40 18 91 -121 -1273 189 -105 -1273 218 -73 -1273 -1273 -40 -214 140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBTGVTGSTRNTGCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 68 E= 2.5e-006 0.102941 0.000000 0.735294 0.161765 0.014706 0.294118 0.411765 0.279412 0.029412 0.058824 0.000000 0.911765 0.191176 0.029412 0.750000 0.029412 0.235294 0.279412 0.470588 0.014706 0.220588 0.132353 0.000000 0.647059 0.000000 0.073529 0.926471 0.000000 0.088235 0.514706 0.382353 0.014706 0.029412 0.161765 0.000000 0.808824 0.514706 0.014706 0.338235 0.132353 0.250000 0.235294 0.191176 0.323529 0.058824 0.147059 0.220588 0.573529 0.132353 0.000000 0.720588 0.147059 0.000000 0.882353 0.117647 0.000000 0.000000 0.147059 0.044118 0.808824 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GBTGVTGSTRNTGCT MEME-1 regular expression -------------------------------------------------------------------------------- G[GCT]TG[GCA][TA]G[CG]T[AG][TAC][TG]GCT -------------------------------------------------------------------------------- Time 207.05 secs. ******************************************************************************** ******************************************************************************** MOTIF TCVTYDWCNWYATCTTCDTCR MEME-2 width = 21 sites = 62 llr = 631 E-value = 2.4e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCVTYDWCNWYATCTTCDTCR MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:3::3513315:112:3214 pos.-specific C :72:6:182:6129::81:72 probability G ::42:4:121:32:2113113 matrix T 9317434:26316:6712711 bits 2.4 2.1 1.9 * 1.7 * Relative 1.4 * * Entropy 1.2 * * * * * (14.7 bits) 0.9 ** ** * * * * * 0.7 ** ** * * * * * 0.5 ** ***** * ***** ** 0.2 ******** ******** ** 0.0 --------------------- Multilevel TCGTCGACATCATCTTCATCA consensus TAGTAT GATGC G G G sequence C T T G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCVTYDWCNWYATCTTCDTCR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIII:741235-741999 + 48 1.24e-09 GAGTTTTTCA TCCTCGTCCTCGTCTTCCTCG TCCTCGCCTT chrXIII:120436-121200 + 12 6.92e-09 GTCATAGATG TCAGCGTCTTCATCTTCGTCT TCACCTTCGA chrIV:808611-809503 - 42 4.21e-08 GTTAACAACT TCGTCATCCACTTCTTCTTCC TGTTCCTTGA chrXIV:500801-503038 + 48 8.01e-08 CACATCTGGG TCAGCTTCCACATCTTCAGCA GCTTCCAGTG chrII:563104-564739 - 49 9.34e-08 TGCTGCTTCA TCATCTTCGTCATCATCTTCT AACACTAACG chrXV:87263-88511 - 15 1.70e-07 GCCGTAGATG TCGTTGAAATCTTCTTCGTCA GAGCTCATTG chrVIII:385029-387051 + 66 1.70e-07 ATCATCCTCA TCATTTTCAACATCATCATCA TCTGCCCCTC chrXVI:64802-66839 + 75 2.27e-07 TAGTTTTAAG TCTTCTTCTTCTTCTTCTTCG TTTTG chrIX:254856-257284 + 12 2.61e-07 ATGTAATGCA TCCTTTTCTTTGTCGTCTTCG GATGATCTGC chrIII:137456-139489 + 75 2.61e-07 AACACTGAAA TCGGTGACTCCATCTTCGACA AGGCT chrV:306131-307598 + 42 3.00e-07 AGAAAGCAAT TCGTCGTCGACGTCTTGCACC CAAACAGAGC chrIV:1080977-1081741 - 10 9.77e-07 CTAAAAATGA TCCTCTACGACCTCTGCGACA ATGTGACCA chrXII:721512-722492 + 60 9.77e-07 ATGACTTTCT TTGGTTTCCTCAGCATCATCC AAAACTAGCC chrXV:797217-798820 + 59 1.11e-06 CTCCACTACT TTGTCTCCATCATCTACTGCA GCAAGTGTCA chrII:606071-607556 + 1 1.25e-06 . TTGGTGACATTGTCGACATCA AAGCCAATGG chrXVI:406422-407949 + 28 1.25e-06 ATCTACAAGG TTGGTGACATTGTCGACATCA AAGCCAATGG chrXII:498683-499839 - 62 1.41e-06 TCTTCTCAAT TTGGTAACCTTACCTTCAGCA TCGACCTTGT chrXV:29099-33848 - 43 1.41e-06 CACCGCCGTT TCGTCAACTTCATCAGGTTCC GTTTCCATCA chrV:58863-59293 - 48 1.59e-06 ACCTTGAGGT TCCTCATCAGCAGCTACTTCT GAAGCATCTT chrI:130578-132041 + 69 1.59e-06 GTGATCTTGG TTGTCGACAACACCTTCTTGT CCCCATATAT chrII:371995-372874 - 4 1.59e-06 TGCTCTTGCC TCCGTTTCCCCAGCTTCTTCC GAG chrXII:903581-904608 + 70 1.59e-06 TAGCGCTTCC TCCTCTACTAAAGCTTCTTCC AGCAGCGCTG chrIV:322032-323794 - 20 1.79e-06 CAATGGGTTC TTGGCGTCTTCTTCTTCGTTT CTCTTTCTGG chrVIII:374162-375141 + 78 2.01e-06 GTCAGACGAA TCTTCGAATATGTCTTCGTCA AT chrII:427645-429154 + 79 2.25e-06 GTCCAAAATG TCATCGTTAGCATCTTCATCC C chrXI:551443-552727 - 45 2.83e-06 ACGTCCTTCT TCATCAACCTTAGCGACGTTG ATTTGAACAG chrVII:970629-974071 + 56 4.88e-06 GTTTAATTGA TCATCTAAAGCACCTTCAGCG ACAATAATTG chrII:138946-140385 - 3 4.88e-06 ATCTGGATTG TCATCAACCGTGTCGTCATGG CA chrVII:130873-131342 - 64 5.43e-06 TAACCAAACA TCGTTGACAATGCCTTCGCTG TTTACCACGA chrV:303793-306147 - 3 6.02e-06 CTTGACGGCT TTATCTAGATCAGCGTCAGCA AA chrIV:869784-870548 - 45 6.68e-06 CAATTGTAAG TCGTCTTCTTTAGCTTTATTG ATGTCATGAA chrIV:1323015-1323544 + 15 8.19e-06 GTAAATGAAC TCGTTACCATCTCCTGGGTCC AACCAAGAAT chrXV:311084-311358 - 64 1.00e-05 ACGTGTAAAT TCCTCGCCATCACCATGCGCT GTTTTTAGTA chrXVI:251931-252440 + 50 1.10e-05 CGGACTTAAT TCCGCTAATTCGTCTACCTCT TTTGCCAAAT chrXII:809635-815843 - 7 1.22e-05 CTTTTCAGCT TCATTTTCATTTCCTTCATAG GCAGCG chrXV:159089-160914 + 21 1.34e-05 GAATAATTCT TCCTTACCTTCACCACCGTCA ATACCCAAGA chrIV:205217-205827 - 23 1.34e-05 ACCATCCTAT TCCCCAACATCACCTTCTTAC TCTCCCACCT chrXIV:657560-658606 - 4 1.47e-05 AAGTCTATAT TCGTCGTGCTTATCGTGCTTA CAC chrXVI:491972-492573 - 35 1.62e-05 CAACTGAAAT TGATCTTCGACATCATGGGCA CTCCTAATGA chrVII:726766-728461 - 14 1.62e-05 TGCTAGCAAG ACTTCATCATTTTCGTCGACA AAGTTCAAAC chrXV:720066-720575 + 64 1.78e-05 GCGAATTACG TGTTCAACGTCGTCGAGATCA GTTATTTTTT chrXIII:251517-253086 + 36 1.78e-05 ATGTTCAGGA TTGTTTTCGTCATATTTATCA GTCATTACCC chrXII:201529-202804 - 69 1.95e-05 ACTTACAAGT ACTTCGAAGTTATCTTGGTCG ACCCTCAACA chrXVI:822409-824460 - 42 1.95e-05 TAGCTTACCG TCATCGTCGATACCTGCTAGA TGTCTTGCCT chrXI:100381-107148 - 73 1.95e-05 AACGTCT TGGTCGACGACGGCTTCCAAG TGCTCAGATT chrVIII:231404-231818 - 5 2.34e-05 TTGCATGATA ATATCGTCGTAGCCTTCAACA TAGC chrIV:43863-44761 - 45 2.34e-05 GGTCTTCATG TCCTTTTGAACAGATTCGTCG TCGAATCTTC chrX:450895-450995 - 76 2.56e-05 TTTA ATGGCATCGATACCTTCGTAA CTAAAACAAG chrXVI:700327-700902 + 49 2.56e-05 GAGAAGTCTC ACATTAACGTTGTCGTTATCG GTCATGTCGA chrII:167137-167328 - 18 3.06e-05 CTCCTCTCTC TTCTTAACCTACTCTGCATCA TGTAGTAGGT chrI:139344-140003 + 40 3.34e-05 CTCCTTCAAC TTGTCATCGAATTCTTCCTTG CTGGCAGTGG chrI:65823-68012 - 2 3.34e-05 TCGGCAACAT TCGACTCCTACATCGACATCT T chrIV:1162725-1164782 + 62 3.64e-05 AGCTCTAGCT TCTTCAACACTAGCTTCAATA ACTTCCAACT chrVII:920357-922138 - 39 3.96e-05 TCTGGAAGAG ATGGCAACAACGTCTTCTGGG TTTGGAATGG chrII:115463-115781 + 65 3.96e-05 CAGATCCACG TCCTTGACTTCCGATACGACA ATTGCTACTT chrXI:384307-384836 + 5 4.31e-05 TGTT TTAGTGACCTCCTCGTCGCTG TATGGCTTTT chrXVI:432342-434524 - 50 4.31e-05 TGGTAAAGTC TTCTTAATGTTAGCATCGTCA AAGACCAAAT chrXI:522797-523349 - 50 4.69e-05 CATTTTCCAT TTGGTGAACTCATCGGGTTCC CTGTCAAGGA chrXVI:247364-247785 + 19 4.69e-05 AGAGAAGAAA TCATTAAGTTCGCCGACGCCA AGTACTGGTT chrIV:507678-509884 + 29 5.53e-05 TTGACATTCC TTGTTTTCTTCAGCATTATTA TGTTCTTGTG chrII:483609-484014 + 54 1.12e-04 CGCAGAATCT TCGTTGTCAATATATACATAT GTAGACGTAT chrXIV:662872-663613 + 16 1.29e-04 GACCTATGTT ACGGTACCGGTGCCGTCTACC TGCTGGGACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCVTYDWCNWYATCTTCDTCR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:741235-741999 1.2e-09 47_[+2]_32 chrXIII:120436-121200 6.9e-09 11_[+2]_68 chrIV:808611-809503 4.2e-08 41_[-2]_38 chrXIV:500801-503038 8e-08 47_[+2]_32 chrII:563104-564739 9.3e-08 48_[-2]_31 chrXV:87263-88511 1.7e-07 14_[-2]_65 chrVIII:385029-387051 1.7e-07 65_[+2]_14 chrXVI:64802-66839 2.3e-07 74_[+2]_5 chrIX:254856-257284 2.6e-07 11_[+2]_68 chrIII:137456-139489 2.6e-07 74_[+2]_5 chrV:306131-307598 3e-07 41_[+2]_38 chrIV:1080977-1081741 9.8e-07 9_[-2]_70 chrXII:721512-722492 9.8e-07 59_[+2]_20 chrXV:797217-798820 1.1e-06 58_[+2]_21 chrII:606071-607556 1.2e-06 [+2]_79 chrXVI:406422-407949 1.2e-06 27_[+2]_52 chrXII:498683-499839 1.4e-06 61_[-2]_18 chrXV:29099-33848 1.4e-06 42_[-2]_37 chrV:58863-59293 1.6e-06 47_[-2]_32 chrI:130578-132041 1.6e-06 68_[+2]_11 chrII:371995-372874 1.6e-06 3_[-2]_76 chrXII:903581-904608 1.6e-06 69_[+2]_10 chrIV:322032-323794 1.8e-06 19_[-2]_60 chrVIII:374162-375141 2e-06 77_[+2]_2 chrII:427645-429154 2.3e-06 78_[+2]_1 chrXI:551443-552727 2.8e-06 44_[-2]_35 chrVII:970629-974071 4.9e-06 55_[+2]_24 chrII:138946-140385 4.9e-06 2_[-2]_77 chrVII:130873-131342 5.4e-06 63_[-2]_16 chrV:303793-306147 6e-06 2_[-2]_77 chrIV:869784-870548 6.7e-06 44_[-2]_35 chrIV:1323015-1323544 8.2e-06 14_[+2]_65 chrXV:311084-311358 1e-05 63_[-2]_16 chrXVI:251931-252440 1.1e-05 49_[+2]_30 chrXII:809635-815843 1.2e-05 6_[-2]_73 chrXV:159089-160914 1.3e-05 20_[+2]_59 chrIV:205217-205827 1.3e-05 22_[-2]_57 chrXIV:657560-658606 1.5e-05 3_[-2]_76 chrXVI:491972-492573 1.6e-05 34_[-2]_45 chrVII:726766-728461 1.6e-05 13_[-2]_66 chrXV:720066-720575 1.8e-05 63_[+2]_16 chrXIII:251517-253086 1.8e-05 35_[+2]_44 chrXII:201529-202804 2e-05 68_[-2]_11 chrXVI:822409-824460 2e-05 41_[-2]_38 chrXI:100381-107148 2e-05 72_[-2]_7 chrVIII:231404-231818 2.3e-05 4_[-2]_75 chrIV:43863-44761 2.3e-05 44_[-2]_35 chrX:450895-450995 2.6e-05 75_[-2]_4 chrXVI:700327-700902 2.6e-05 48_[+2]_31 chrII:167137-167328 3.1e-05 17_[-2]_62 chrI:139344-140003 3.3e-05 39_[+2]_40 chrI:65823-68012 3.3e-05 1_[-2]_78 chrIV:1162725-1164782 3.6e-05 61_[+2]_18 chrVII:920357-922138 4e-05 38_[-2]_41 chrII:115463-115781 4e-05 64_[+2]_15 chrXI:384307-384836 4.3e-05 4_[+2]_75 chrXVI:432342-434524 4.3e-05 49_[-2]_30 chrXI:522797-523349 4.7e-05 49_[-2]_30 chrXVI:247364-247785 4.7e-05 18_[+2]_61 chrIV:507678-509884 5.5e-05 28_[+2]_51 chrII:483609-484014 0.00011 53_[+2]_26 chrXIV:662872-663613 0.00013 15_[+2]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCVTYDWCNWYATCTTCDTCR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCVTYDWCNWYATCTTCDTCR width=21 seqs=62 chrXIII:741235-741999 ( 48) TCCTCGTCCTCGTCTTCCTCG 1 chrXIII:120436-121200 ( 12) TCAGCGTCTTCATCTTCGTCT 1 chrIV:808611-809503 ( 42) TCGTCATCCACTTCTTCTTCC 1 chrXIV:500801-503038 ( 48) TCAGCTTCCACATCTTCAGCA 1 chrII:563104-564739 ( 49) TCATCTTCGTCATCATCTTCT 1 chrXV:87263-88511 ( 15) TCGTTGAAATCTTCTTCGTCA 1 chrVIII:385029-387051 ( 66) TCATTTTCAACATCATCATCA 1 chrXVI:64802-66839 ( 75) TCTTCTTCTTCTTCTTCTTCG 1 chrIX:254856-257284 ( 12) TCCTTTTCTTTGTCGTCTTCG 1 chrIII:137456-139489 ( 75) TCGGTGACTCCATCTTCGACA 1 chrV:306131-307598 ( 42) TCGTCGTCGACGTCTTGCACC 1 chrIV:1080977-1081741 ( 10) TCCTCTACGACCTCTGCGACA 1 chrXII:721512-722492 ( 60) TTGGTTTCCTCAGCATCATCC 1 chrXV:797217-798820 ( 59) TTGTCTCCATCATCTACTGCA 1 chrII:606071-607556 ( 1) TTGGTGACATTGTCGACATCA 1 chrXVI:406422-407949 ( 28) TTGGTGACATTGTCGACATCA 1 chrXII:498683-499839 ( 62) TTGGTAACCTTACCTTCAGCA 1 chrXV:29099-33848 ( 43) TCGTCAACTTCATCAGGTTCC 1 chrV:58863-59293 ( 48) TCCTCATCAGCAGCTACTTCT 1 chrI:130578-132041 ( 69) TTGTCGACAACACCTTCTTGT 1 chrII:371995-372874 ( 4) TCCGTTTCCCCAGCTTCTTCC 1 chrXII:903581-904608 ( 70) TCCTCTACTAAAGCTTCTTCC 1 chrIV:322032-323794 ( 20) TTGGCGTCTTCTTCTTCGTTT 1 chrVIII:374162-375141 ( 78) TCTTCGAATATGTCTTCGTCA 1 chrII:427645-429154 ( 79) TCATCGTTAGCATCTTCATCC 1 chrXI:551443-552727 ( 45) TCATCAACCTTAGCGACGTTG 1 chrVII:970629-974071 ( 56) TCATCTAAAGCACCTTCAGCG 1 chrII:138946-140385 ( 3) TCATCAACCGTGTCGTCATGG 1 chrVII:130873-131342 ( 64) TCGTTGACAATGCCTTCGCTG 1 chrV:303793-306147 ( 3) TTATCTAGATCAGCGTCAGCA 1 chrIV:869784-870548 ( 45) TCGTCTTCTTTAGCTTTATTG 1 chrIV:1323015-1323544 ( 15) TCGTTACCATCTCCTGGGTCC 1 chrXV:311084-311358 ( 64) TCCTCGCCATCACCATGCGCT 1 chrXVI:251931-252440 ( 50) TCCGCTAATTCGTCTACCTCT 1 chrXII:809635-815843 ( 7) TCATTTTCATTTCCTTCATAG 1 chrXV:159089-160914 ( 21) TCCTTACCTTCACCACCGTCA 1 chrIV:205217-205827 ( 23) TCCCCAACATCACCTTCTTAC 1 chrXIV:657560-658606 ( 4) TCGTCGTGCTTATCGTGCTTA 1 chrXVI:491972-492573 ( 35) TGATCTTCGACATCATGGGCA 1 chrVII:726766-728461 ( 14) ACTTCATCATTTTCGTCGACA 1 chrXV:720066-720575 ( 64) TGTTCAACGTCGTCGAGATCA 1 chrXIII:251517-253086 ( 36) TTGTTTTCGTCATATTTATCA 1 chrXII:201529-202804 ( 69) ACTTCGAAGTTATCTTGGTCG 1 chrXVI:822409-824460 ( 42) TCATCGTCGATACCTGCTAGA 1 chrXI:100381-107148 ( 73) TGGTCGACGACGGCTTCCAAG 1 chrVIII:231404-231818 ( 5) ATATCGTCGTAGCCTTCAACA 1 chrIV:43863-44761 ( 45) TCCTTTTGAACAGATTCGTCG 1 chrX:450895-450995 ( 76) ATGGCATCGATACCTTCGTAA 1 chrXVI:700327-700902 ( 49) ACATTAACGTTGTCGTTATCG 1 chrII:167137-167328 ( 18) TTCTTAACCTACTCTGCATCA 1 chrI:139344-140003 ( 40) TTGTCATCGAATTCTTCCTTG 1 chrI:65823-68012 ( 2) TCGACTCCTACATCGACATCT 1 chrIV:1162725-1164782 ( 62) TCTTCAACACTAGCTTCAATA 1 chrVII:920357-922138 ( 39) ATGGCAACAACGTCTTCTGGG 1 chrII:115463-115781 ( 65) TCCTTGACTTCCGATACGACA 1 chrXI:384307-384836 ( 5) TTAGTGACCTCCTCGTCGCTG 1 chrXVI:432342-434524 ( 50) TTCTTAATGTTAGCATCGTCA 1 chrXI:522797-523349 ( 50) TTGGTGAACTCATCGGGTTCC 1 chrXVI:247364-247785 ( 19) TCATTAAGTTCGCCGACGCCA 1 chrIV:507678-509884 ( 29) TTGTTTTCTTCAGCATTATTA 1 chrII:483609-484014 ( 54) TCGTTGTCAATATATACATAT 1 chrXIV:662872-663613 ( 16) ACGGTACCGGTGCCGTCTACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCVTYDWCNWYATCTTCDTCR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 36720 bayes= 9.91486 E= 2.4e-007 -144 -1260 -1260 154 -1260 176 -201 -7 -24 21 111 -166 -424 -359 31 125 -1260 162 -1260 40 8 -1260 87 8 61 -101 -1260 51 -166 205 -159 -324 8 -1 31 -34 -7 -201 -127 93 -224 165 -1260 8 84 -159 41 -124 -1260 21 11 89 -224 227 -1260 -1260 -107 -1260 31 100 -78 -359 -101 122 -1260 202 -42 -224 15 -79 66 -34 -92 -201 -59 111 -192 187 -159 -107 46 -13 41 -107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCVTYDWCNWYATCTTCDTCR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 62 E= 2.4e-007 0.112903 0.000000 0.000000 0.887097 0.000000 0.661290 0.048387 0.290323 0.258065 0.225806 0.419355 0.096774 0.016129 0.016129 0.241935 0.725806 0.000000 0.596774 0.000000 0.403226 0.322581 0.000000 0.354839 0.322581 0.467742 0.096774 0.000000 0.435484 0.096774 0.806452 0.064516 0.032258 0.322581 0.193548 0.241935 0.241935 0.290323 0.048387 0.080645 0.580645 0.064516 0.612903 0.000000 0.322581 0.548387 0.064516 0.258065 0.129032 0.000000 0.225806 0.209677 0.564516 0.064516 0.935484 0.000000 0.000000 0.145161 0.000000 0.241935 0.612903 0.177419 0.016129 0.096774 0.709677 0.000000 0.790323 0.145161 0.064516 0.338710 0.112903 0.306452 0.241935 0.161290 0.048387 0.129032 0.661290 0.080645 0.709677 0.064516 0.145161 0.419355 0.177419 0.258065 0.145161 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCVTYDWCNWYATCTTCDTCR MEME-2 regular expression -------------------------------------------------------------------------------- T[CT][GAC][TG][CT][GAT][AT]C[AGT][TA][CT][AG][TCG]C[TG]TC[AGT]TC[AG] -------------------------------------------------------------------------------- Time 397.85 secs. ******************************************************************************** ******************************************************************************** MOTIF HWYWHYTWCTYYTCTTTCTYY MEME-3 width = 21 sites = 33 llr = 403 E-value = 1.1e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif HWYWHYTWCTYYTCTTTCTYY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 44:42::3:22:1:::12:1: pos.-specific C 3:4:34:2a235:73116143 probability G :::11::1:1:2::::::::1 matrix T 365646a5:654937982956 bits 2.4 2.1 * 1.9 * 1.7 * * Relative 1.4 * * Entropy 1.2 * * ** * * (17.6 bits) 0.9 * ** * ***** * 0.7 ** ** * ********** 0.5 *** ** ************* 0.2 **** ** ************* 0.0 --------------------- Multilevel ATTTTTTTCTTCTCTTTCTTT consensus TACACC A CT TC T CC sequence C A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HWYWHYTWCTYYTCTTTCTYY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXII:658489-659187 - 20 9.97e-10 TAGCGTCAAC CATTCTTACTTCTCTTTCTCT TGATATGTGG chrXII:658489-659226 - 1 9.97e-10 TAGCGTCAAC CATTCTTACTTCTCTTTCTCT chrXVI:868909-869666 + 20 1.31e-09 TCCAGTCAAT ATCAACTTCTTCTCTTTCTCT TCTTGGACCT chrXVI:251931-252440 + 79 3.44e-09 CTTTTGCCAA ATTTCTTCCTTCTCCTTCTTT T chrV:504600-505337 + 47 1.63e-08 TATAATTTTA CTTTTTTTCCTTTCCTTCTTT TCAATTTCGA chrVII:850901-851617 + 57 3.21e-08 CATGGGGCGA AATATTTCCTCCTCCTTCTTC AGCCCCATTG chrXIII:625900-627037 + 30 1.38e-07 TTCGGGATCT CTTTGTTTCTTCTTTTTTTCC CGGAGAATAA chrXV:680282-681018 + 38 1.57e-07 CATGCACAAG AATAACTTCTCTTCTTTTTCT TGAAATAAAG chrVIII:126325-127909 + 14 1.57e-07 CACATTTACT AACTATTTCTTTTCCTTCCTT TTTTTACACA chrXVI:797662-798043 - 23 3.68e-07 TTTTTTAAAA AATATTTACACGTCTTTCTCT AAACTATATA chrXIV:720619-723320 - 1 4.61e-07 GATCCTCACA ATTTTCTACTTTTTTTTTTTT chrXIII:229148-229912 + 80 6.38e-07 AGCAATTTAT TTTTCTTACTTCTCCTTACTC chrXV:83645-84133 - 71 7.84e-07 TGGTCATCC CACATCTTCGTTTCTTTTTTT CCATGAAATA chrXVI:875889-876299 + 66 8.68e-07 TAGCTCTAAC TATAGCTACTTGTTTTTCTCC CAGTATGTGT chrIV:1317444-1318208 - 58 9.59e-07 TAGTGTTTCT TTCATTTGCACTTCTTTTTTT GCGTGTGGAC chrXVI:352531-353190 + 58 9.59e-07 AGGCTTCAAA ATCTTTTTCCTTTCTTTTTAC CAACAACTTG chrIV:155386-156060 - 31 1.06e-06 TTATTTATTT TTGTCTTTCTACTCTCTCTTT TTTCTTAATC chrVII:904622-904992 - 23 1.40e-06 TTTCAAATTT CACTCTTGCTATTCTCTCTTG GTAGTACAAA chrII:219686-221104 - 62 1.54e-06 TATGGTTATG CTCTGCTTCCCTATTTTCTTT GCGTTTTCAT chrV:51706-53427 - 47 1.69e-06 TTTCTATCTG TTTTGTCTCTTCTCTTCCTCT CTGGATAACC chrIV:591978-592431 + 29 1.84e-06 ATAGCAAGCC TTCTTCTACCTGTTTTTTTTT GATGATTGTT chrVIII:385029-387051 + 5 1.84e-06 TTTC ATCTACTGCACCTTTCTCTTC CCAACTTTCT chrXV:87263-88511 - 79 2.01e-06 C CTTATTTTGTTCTTCTTCTTT TTTGACTTCT chrII:305298-305509 + 73 2.01e-06 TTGCCAGTAG TTCAACTTCTCGTCTTTATAC TGAGAGT chrI:65147-65764 - 51 2.39e-06 GTATAGCTTG AACATCTGCCCCTCTCTATCT AATGTTTTTT chrXI:126461-127225 - 40 2.39e-06 TATCGAACCT TTTTCCTTCAACTTCTTCCTC TACACCGACG chrX:150894-150994 - 55 3.89e-06 GTTCAAGGCA ATCAATTCCTCCTCTTCACCC TGATGATTTA chrXV:91683-93104 - 52 4.88e-06 AGATTTCATT AATGCTTACGCTTCTTTCTTG CAAAGACAAG chrXII:198524-199863 + 58 6.51e-06 TGATCTTGAG CTCTTTTCCTATACTTTGTCC TATGGCCAGC chrIII:48545-50343 + 10 6.98e-06 AGAGGCTTG TATTCTTCCAATTCTTCCTCG TCATTGTAGA chrV:545447-546891 + 20 9.73e-06 AGGTTTGGCT CTTAACTTCTCTGTCTTCTAT TATGAAATTC chrXIII:743111-743340 - 54 1.49e-05 TGGCAAGCCG TATGTCTTCTACTCCTAATCC ACTGCCGGCA chrVII:474066-474657 + 65 1.87e-05 AGATTCGATT TTCTATTACTTGATCTACTTT TTCCTATAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HWYWHYTWCTYYTCTTTCTYY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:658489-659187 1e-09 19_[-3]_60 chrXII:658489-659226 1e-09 [-3]_79 chrXVI:868909-869666 1.3e-09 19_[+3]_60 chrXVI:251931-252440 3.4e-09 78_[+3]_1 chrV:504600-505337 1.6e-08 46_[+3]_33 chrVII:850901-851617 3.2e-08 56_[+3]_23 chrXIII:625900-627037 1.4e-07 29_[+3]_50 chrXV:680282-681018 1.6e-07 37_[+3]_42 chrVIII:126325-127909 1.6e-07 13_[+3]_66 chrXVI:797662-798043 3.7e-07 22_[-3]_57 chrXIV:720619-723320 4.6e-07 [-3]_79 chrXIII:229148-229912 6.4e-07 79_[+3] chrXV:83645-84133 7.8e-07 70_[-3]_9 chrXVI:875889-876299 8.7e-07 65_[+3]_14 chrIV:1317444-1318208 9.6e-07 57_[-3]_22 chrXVI:352531-353190 9.6e-07 57_[+3]_22 chrIV:155386-156060 1.1e-06 30_[-3]_49 chrVII:904622-904992 1.4e-06 22_[-3]_57 chrII:219686-221104 1.5e-06 61_[-3]_18 chrV:51706-53427 1.7e-06 46_[-3]_33 chrIV:591978-592431 1.8e-06 28_[+3]_51 chrVIII:385029-387051 1.8e-06 4_[+3]_75 chrXV:87263-88511 2e-06 78_[-3]_1 chrII:305298-305509 2e-06 72_[+3]_7 chrI:65147-65764 2.4e-06 50_[-3]_29 chrXI:126461-127225 2.4e-06 39_[-3]_40 chrX:150894-150994 3.9e-06 54_[-3]_25 chrXV:91683-93104 4.9e-06 51_[-3]_28 chrXII:198524-199863 6.5e-06 57_[+3]_22 chrIII:48545-50343 7e-06 9_[+3]_70 chrV:545447-546891 9.7e-06 19_[+3]_60 chrXIII:743111-743340 1.5e-05 53_[-3]_26 chrVII:474066-474657 1.9e-05 64_[+3]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HWYWHYTWCTYYTCTTTCTYY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HWYWHYTWCTYYTCTTTCTYY width=21 seqs=33 chrXII:658489-659187 ( 20) CATTCTTACTTCTCTTTCTCT 1 chrXII:658489-659226 ( 1) CATTCTTACTTCTCTTTCTCT 1 chrXVI:868909-869666 ( 20) ATCAACTTCTTCTCTTTCTCT 1 chrXVI:251931-252440 ( 79) ATTTCTTCCTTCTCCTTCTTT 1 chrV:504600-505337 ( 47) CTTTTTTTCCTTTCCTTCTTT 1 chrVII:850901-851617 ( 57) AATATTTCCTCCTCCTTCTTC 1 chrXIII:625900-627037 ( 30) CTTTGTTTCTTCTTTTTTTCC 1 chrXV:680282-681018 ( 38) AATAACTTCTCTTCTTTTTCT 1 chrVIII:126325-127909 ( 14) AACTATTTCTTTTCCTTCCTT 1 chrXVI:797662-798043 ( 23) AATATTTACACGTCTTTCTCT 1 chrXIV:720619-723320 ( 1) ATTTTCTACTTTTTTTTTTTT 1 chrXIII:229148-229912 ( 80) TTTTCTTACTTCTCCTTACTC 1 chrXV:83645-84133 ( 71) CACATCTTCGTTTCTTTTTTT 1 chrXVI:875889-876299 ( 66) TATAGCTACTTGTTTTTCTCC 1 chrIV:1317444-1318208 ( 58) TTCATTTGCACTTCTTTTTTT 1 chrXVI:352531-353190 ( 58) ATCTTTTTCCTTTCTTTTTAC 1 chrIV:155386-156060 ( 31) TTGTCTTTCTACTCTCTCTTT 1 chrVII:904622-904992 ( 23) CACTCTTGCTATTCTCTCTTG 1 chrII:219686-221104 ( 62) CTCTGCTTCCCTATTTTCTTT 1 chrV:51706-53427 ( 47) TTTTGTCTCTTCTCTTCCTCT 1 chrIV:591978-592431 ( 29) TTCTTCTACCTGTTTTTTTTT 1 chrVIII:385029-387051 ( 5) ATCTACTGCACCTTTCTCTTC 1 chrXV:87263-88511 ( 79) CTTATTTTGTTCTTCTTCTTT 1 chrII:305298-305509 ( 73) TTCAACTTCTCGTCTTTATAC 1 chrI:65147-65764 ( 51) AACATCTGCCCCTCTCTATCT 1 chrXI:126461-127225 ( 40) TTTTCCTTCAACTTCTTCCTC 1 chrX:150894-150994 ( 55) ATCAATTCCTCCTCTTCACCC 1 chrXV:91683-93104 ( 52) AATGCTTACGCTTCTTTCTTG 1 chrXII:198524-199863 ( 58) CTCTTTTCCTATACTTTGTCC 1 chrIII:48545-50343 ( 10) TATTCTTCCAATTCTTCCTCG 1 chrV:545447-546891 ( 20) CTTAACTTCTCTGTCTTCTAT 1 chrXIII:743111-743340 ( 54) TATGTCTTCTACTCCTAATCC 1 chrVII:474066-474657 ( 65) TTCTATTACTTGATCTACTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HWYWHYTWCTYYTCTTTCTYY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 36720 bayes= 10.154 E= 1.1e-005 25 64 -1169 13 37 -1169 -1169 99 -1169 112 -268 84 25 -1169 -168 91 -33 49 -68 25 -1169 102 -1169 99 -1169 -268 -1169 167 -16 -36 -68 57 -1169 232 -268 -1169 -101 -36 -168 106 -75 78 -1169 67 -1169 122 -36 37 -175 -1169 -268 152 -1169 184 -1169 -1 -1169 64 -1169 119 -1169 -68 -1169 152 -233 -110 -1169 147 -101 164 -268 -53 -1169 -68 -1169 152 -175 102 -1169 75 -1169 78 -110 91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HWYWHYTWCTYYTCTTTCTYY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 33 E= 1.1e-005 0.363636 0.303030 0.000000 0.333333 0.393939 0.000000 0.000000 0.606061 0.000000 0.424242 0.030303 0.545455 0.363636 0.000000 0.060606 0.575758 0.242424 0.272727 0.121212 0.363636 0.000000 0.393939 0.000000 0.606061 0.000000 0.030303 0.000000 0.969697 0.272727 0.151515 0.121212 0.454545 0.000000 0.969697 0.030303 0.000000 0.151515 0.151515 0.060606 0.636364 0.181818 0.333333 0.000000 0.484848 0.000000 0.454545 0.151515 0.393939 0.090909 0.000000 0.030303 0.878788 0.000000 0.696970 0.000000 0.303030 0.000000 0.303030 0.000000 0.696970 0.000000 0.121212 0.000000 0.878788 0.060606 0.090909 0.000000 0.848485 0.151515 0.606061 0.030303 0.212121 0.000000 0.121212 0.000000 0.878788 0.090909 0.393939 0.000000 0.515152 0.000000 0.333333 0.090909 0.575758 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HWYWHYTWCTYYTCTTTCTYY MEME-3 regular expression -------------------------------------------------------------------------------- [ATC][TA][TC][TA][TCA][TC]T[TA]CT[TC][CT]T[CT][TC]TT[CT]T[TC][TC] -------------------------------------------------------------------------------- Time 582.05 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:282653-284065 1.93e-01 100 chrXIII:287939-290051 4.10e-01 100 chrI:74908-75672 4.09e-01 100 chrXIV:63184-64742 6.36e-01 100 chrXI:100381-107148 5.05e-02 72_[-2(1.95e-05)]_7 chrVII:882244-884146 6.92e-05 23_[-1(6.28e-08)]_62 chrXI:109069-110588 6.72e-01 100 chrIX:23290-28712 1.55e-02 62_[+1(1.46e-05)]_23 chrI:107622-108386 3.77e-01 100 chrIV:217403-218249 6.92e-01 100 chrXIII:632091-634860 3.20e-01 100 chrII:376126-378681 5.92e-02 100 chrXIV:442982-444506 1.50e-01 100 chrXII:780526-781569 6.93e-01 100 chrV:141633-142965 8.79e-01 100 chrXVI:406422-407949 1.83e-03 27_[+2(1.25e-06)]_52 chrII:611829-614299 6.90e-02 34_[-1(8.24e-05)]_51 chrXIV:413437-415068 1.27e-01 100 chrXV:899856-901385 4.92e-02 65_[-1(1.61e-05)]_20 chrXIV:61797-63116 8.94e-01 100 chrX:171578-171678 7.12e-01 100 chrXIII:759462-763277 1.02e-01 100 chrIV:555327-556796 2.61e-01 100 chrIV:525319-527338 9.80e-01 100 chrXIV:281923-283610 6.02e-01 100 chrV:504600-505337 8.31e-06 46_[+3(1.63e-08)]_33 chrXVI:191995-192968 6.22e-02 100 chrXIV:505468-507499 1.39e-01 100 chrV:302579-303614 4.12e-02 100 chrXI:126461-127225 3.83e-04 39_[-3(2.39e-06)]_40 chrIV:1204154-1206577 3.18e-01 100 chrXII:96950-97752 4.34e-02 25_[-1(3.80e-05)]_60 chrX:453208-453308 3.17e-04 16_[-1(6.28e-08)]_69 chrVII:95602-97344 5.48e-01 100 chrVIII:385029-387051 2.79e-07 4_[+3(1.84e-06)]_7_[+2(3.16e-06)]_\ 12_[+2(1.70e-07)]_14 chrXV:830218-830655 8.26e-01 100 chrXII:728719-730788 8.59e-01 100 chrIV:1167811-1168575 2.58e-01 100 chrIV:471693-472102 5.17e-04 41_[+1(1.26e-06)]_44 chrXVI:247364-247785 2.23e-03 18_[+2(4.69e-05)]_61 chrV:423369-425451 8.51e-01 100 chrXV:722682-725771 1.50e-02 72_[+1(1.46e-05)]_13 chrXV:904674-905914 9.33e-01 100 chrIII:48545-50343 2.48e-03 9_[+3(6.98e-06)]_70 chrII:115463-115781 4.84e-02 64_[+2(3.96e-05)]_15 chrXVI:64802-66839 3.33e-06 74_[+2(2.27e-07)]_5 chrVII:599235-601520 5.49e-01 100 chrXII:950892-953733 9.34e-01 100 chrIV:930977-931336 2.08e-01 100 chrVIII:381320-382966 3.02e-01 100 chrV:303793-306147 4.52e-04 2_[-2(6.02e-06)]_77 chrV:449404-450388 2.19e-01 100 chrV:85363-86733 2.14e-01 100 chrIV:1359715-1361215 1.49e-01 100 chrVIII:499544-500305 8.76e-01 100 chrXI:112741-114789 1.61e-01 77_[-3(7.73e-05)]_2 chrX:569751-569851 4.45e-04 5_[+1(2.42e-06)]_80 chrV:100642-101461 4.30e-03 73_[+1(1.44e-06)]_12 chrXV:815560-816086 8.40e-01 100 chrV:465464-465803 5.44e-01 100 chrII:168224-169801 1.18e-01 100 chrXVI:432342-434524 6.88e-02 49_[-2(4.31e-05)]_30 chrVII:846828-848509 9.46e-01 100 chrV:328578-329342 5.36e-01 100 chrIV:1079011-1080354 2.84e-01 100 chrXVI:155291-156055 8.30e-01 100 chrVII:850901-851617 6.01e-08 11_[-1(8.66e-06)]_30_[+3(3.21e-08)]_\ 23 chrXVI:297392-298566 9.02e-01 100 chrXIII:55058-55518 2.45e-02 53_[+3(8.59e-05)]_26 chrXI:557238-558002 2.94e-01 100 chrV:401320-402084 6.63e-01 100 chrIV:205217-205827 9.39e-03 22_[-2(1.34e-05)]_57 chrV:66724-69121 8.68e-02 100 chrXVI:350098-350669 3.38e-01 100 chrXV:619487-624786 3.98e-02 78_[+1(3.80e-05)]_7 chrIV:1012799-1013811 4.05e-01 100 chrV:406672-409323 2.80e-01 100 chrXII:809635-815843 3.61e-03 6_[-2(1.22e-05)]_73 chrVII:453005-453205 7.14e-01 100 chrXVI:96083-98786 1.32e-01 100 chrXIII:19450-19905 1.84e-02 100 chrXVI:700327-700902 1.14e-02 48_[+2(2.56e-05)]_31 chrVIII:374162-375141 9.88e-05 36_[-3(4.67e-05)]_20_[+2(2.01e-06)]_\ 2 chrIV:331936-333395 2.60e-02 100 chrXVI:108496-114594 6.07e-02 100 chrV:51706-53427 4.53e-03 46_[-3(1.69e-06)]_33 chrX:464256-464356 4.85e-01 100 chrXII:903581-904608 9.98e-04 3_[+2(6.02e-06)]_12_[+2(1.59e-06)]_\ 12_[+2(1.59e-06)]_10 chrVII:1020554-1021462 6.27e-01 100 chrXVI:251931-252440 9.57e-08 49_[+2(1.10e-05)]_8_[+3(3.44e-09)]_\ 1 chrII:141700-142353 1.52e-01 100 chrXII:198524-199863 1.46e-02 57_[+3(6.51e-06)]_22 chrXV:444431-446326 2.31e-01 100 chrIV:1401544-1403508 5.83e-02 100 chrX:703993-704093 7.92e-01 100 chrXVI:797455-797753 6.07e-01 100 chrXII:876205-876575 7.31e-03 61_[-3(6.68e-05)]_18 chrIV:218119-218834 3.20e-01 100 chrXV:795911-796675 2.15e-01 100 chrVIII:211740-211978 4.09e-01 100 chrXIII:754816-755580 5.85e-01 100 chrXII:855657-857681 3.96e-01 100 chrXII:712014-713367 3.88e-01 100 chrXIII:625900-627037 8.22e-04 29_[+3(1.38e-07)]_50 chrXIII:892946-895654 8.69e-02 100 chrII:83428-84418 1.94e-01 100 chrXIV:499394-500909 7.55e-02 100 chrIII:120533-122493 1.42e-03 35_[+1(1.44e-06)]_50 chrXVI:882699-883110 7.51e-01 100 chrVII:906088-906353 2.37e-01 100 chrII:371995-372874 8.97e-06 3_[-2(1.59e-06)]_[-1(1.07e-05)]_61 chrXII:707921-710585 4.63e-02 84_[-1(1.46e-05)]_1 chrXIV:253053-254293 3.23e-03 25_[+1(1.61e-05)]_60 chrV:404119-404350 8.07e-01 100 chrIV:600578-602461 2.61e-01 100 chrXIV:402243-402871 2.93e-01 100 chrXVI:794779-796202 1.17e-01 100 chrVII:187316-187699 9.61e-02 100 chrX:701587-701687 1.35e-01 100 chrXII:368518-370443 2.84e-01 100 chrXVI:875889-876299 2.24e-03 65_[+3(8.68e-07)]_14 chrVII:438827-440115 7.63e-02 100 chrIX:68517-69927 4.60e-01 100 chrXVI:74068-74901 2.95e-01 100 chrXII:568331-571058 4.57e-01 100 chrIV:1323015-1323544 5.23e-03 14_[+2(8.19e-06)]_65 chrXV:797217-798820 2.08e-05 58_[+2(1.11e-06)]_21 chrXVI:40765-43106 2.60e-01 100 chrII:606071-607556 1.83e-03 [+2(1.25e-06)]_79 chrXII:328696-329223 2.70e-01 100 chrXVI:868909-869666 5.19e-09 19_[+3(1.31e-09)]_21_[-1(2.62e-05)]_\ 24 chrVIII:491796-492248 1.73e-01 100 chrIII:57259-58881 3.41e-01 100 chrX:450895-450995 8.56e-03 75_[-2(2.56e-05)]_4 chrXV:83645-84133 1.38e-03 70_[-3(7.84e-07)]_9 chrXI:208088-209162 1.30e-01 100 chrI:71474-73761 5.80e-01 100 chrXII:648923-651398 2.19e-01 100 chrXVI:136210-136841 5.01e-01 100 chrXIII:251517-253086 1.76e-02 35_[+2(1.78e-05)]_44 chrVII:915599-916192 4.41e-01 100 chrXV:882588-883910 2.91e-04 56_[+1(1.64e-06)]_29 chrVIII:160338-160934 2.83e-01 100 chrV:306131-307598 1.44e-03 41_[+2(3.00e-07)]_38 chrX:648094-648194 1.24e-02 67_[+1(6.99e-05)]_18 chrXIV:697477-697780 6.76e-01 100 chrV:27513-29866 9.02e-02 100 chrX:651698-651798 1.63e-05 32_[+1(2.99e-09)]_53 chrVIII:119559-121958 4.94e-03 6_[-1(2.17e-05)]_79 chrXII:658489-659226 6.73e-08 [-3(9.97e-10)]_[+1(1.97e-05)]_64 chrIV:1236266-1238562 2.95e-01 100 chrXIII:219069-221128 9.96e-01 100 chrXIV:662872-663613 2.01e-02 100 chrX:442738-442838 2.10e-02 72_[-1(1.78e-05)]_13 chrI:107826-108590 3.11e-01 100 chrIV:507678-509884 1.46e-02 28_[+2(5.53e-05)]_51 chrXI:617531-618960 7.46e-01 100 chrVII:147778-149161 8.64e-04 22_[-1(1.19e-05)]_63 chrVII:277332-278846 7.77e-01 100 chrII:604305-605868 1.68e-01 100 chrIV:43863-44761 3.57e-02 44_[-2(2.34e-05)]_35 chrVIII:451020-453188 7.18e-01 100 chrXI:522797-523349 2.89e-02 49_[-2(4.69e-05)]_30 chrVII:475819-478841 1.31e-01 100 chrXIV:229446-230990 3.66e-02 74_[-1(4.54e-05)]_11 chrXII:231826-234403 6.60e-01 100 chrXII:347976-348876 5.96e-01 100 chrI:139950-140395 8.84e-02 100 chrX:411097-411197 6.83e-01 100 chrXIV:720619-723320 2.85e-04 [-3(4.61e-07)]_79 chrIX:128064-129859 4.02e-01 100 chrXII:658489-659187 6.73e-08 19_[-3(9.97e-10)]_[+1(1.97e-05)]_45 chrVII:667363-667869 1.97e-02 30_[-1(6.99e-05)]_55 chrIV:744061-744286 3.51e-01 100 chrXV:547794-548558 6.03e-01 100 chrV:510369-512260 8.35e-01 100 chrIV:869784-870548 1.25e-02 44_[-2(6.68e-06)]_35 chrXIII:551736-553306 8.80e-03 45_[+1(2.73e-06)]_40 chrXI:158417-159720 9.05e-01 100 chrXV:758865-759722 4.03e-01 100 chrXV:580255-581019 7.95e-01 100 chrII:138946-140385 5.05e-04 2_[-2(4.88e-06)]_6_[-2(7.03e-05)]_\ 22_[-3(7.46e-05)]_7 chrXII:827026-827790 1.00e-01 100 chrXVI:133025-133552 3.69e-01 100 chrVII:398485-400260 1.21e-01 100 chrVIII:34333-36277 5.99e-02 72_[+3(6.68e-05)]_7 chrIV:1419789-1420409 7.23e-02 55_[-1(6.99e-05)]_30 chrXV:757733-758663 7.93e-01 100 chrXVI:404691-406494 7.19e-01 100 chrI:65823-68012 5.31e-02 1_[-2(3.34e-05)]_78 chrXVI:692643-695171 2.41e-02 55_[+2(8.23e-05)]_24 chrII:483609-484014 9.46e-03 19_[-1(6.99e-05)]_66 chrXV:832060-832962 6.32e-01 100 chrVII:699830-700594 6.50e-01 100 chrXIII:878646-880341 1.70e-01 100 chrXIII:296891-298958 1.89e-01 100 chrXV:380861-381911 3.02e-01 100 chrXIV:669556-669984 6.74e-01 100 chrXVI:821488-822331 2.13e-01 100 chrXVI:76876-77640 2.60e-01 100 chrXVI:480966-482092 2.85e-04 21_[+1(4.41e-06)]_64 chrXIV:657560-658606 1.26e-05 3_[-2(1.47e-05)]_11_[-1(3.80e-05)]_\ 17_[-3(3.43e-05)]_12 chrXIII:161804-164488 1.66e-04 12_[-1(8.24e-05)]_30_[+3(3.76e-05)]_\ 22 chrVII:364719-366188 9.64e-03 29_[-1(4.96e-06)]_56 chrIV:330860-332087 1.46e-02 83_[+1(4.96e-06)]_2 chrXV:1015590-1016088 3.57e-01 100 chrVI:225423-226117 3.16e-02 100 chrXVI:464547-465311 9.06e-01 100 chrXI:551443-552727 8.52e-03 44_[-2(2.83e-06)]_35 chrXIII:886810-889328 1.05e-02 59_[-1(1.64e-06)]_26 chrIV:133919-134896 1.93e-01 100 chrIV:369831-370595 4.48e-01 100 chrII:392756-395610 6.59e-01 100 chrXII:672950-674633 2.27e-01 100 chrII:426116-426515 2.91e-01 100 chrXV:729537-729995 5.49e-01 100 chrIV:200448-200651 2.04e-01 100 chrX:73533-73633 3.16e-01 100 chrIV:355088-357129 9.36e-01 100 chrXII:663233-665126 8.26e-05 40_[+2(1.25e-06)]_39 chrXV:677776-679001 2.78e-01 100 chrX:75729-75829 8.35e-01 100 chrV:298734-302127 9.34e-01 100 chrXV:738675-739005 9.54e-01 100 chrXVI:857478-858242 7.57e-01 100 chrVII:876595-878275 3.05e-01 100 chrI:140980-141570 3.26e-02 47_[-1(1.31e-05)]_38 chrX:292998-293098 6.24e-01 100 chrII:256100-257995 5.27e-01 100 chrII:88753-89648 8.50e-02 100 chrXII:1015217-1015560 7.77e-01 100 chrXVI:107674-108044 8.58e-01 100 chrXIV:339943-340348 4.65e-01 100 chrXII:540733-541759 3.06e-01 100 chrVII:672621-672943 6.17e-02 10_[-1(3.80e-05)]_75 chrVIII:126325-127909 5.30e-04 13_[+3(1.57e-07)]_66 chrXI:38429-39378 2.18e-01 100 chrIX:214021-214404 3.02e-01 100 chrVIII:104097-105514 2.92e-01 100 chrII:413780-415451 1.89e-01 100 chrXII:721512-722492 7.94e-04 59_[+2(9.77e-07)]_20 chrXV:80166-83148 9.70e-01 100 chrII:43582-44346 1.20e-01 100 chrXVI:352531-353190 2.52e-03 57_[+3(9.59e-07)]_22 chrV:122016-123156 5.61e-01 100 chrXIII:732241-733584 9.13e-03 53_[-2(3.06e-05)]_26 chrV:460146-461851 6.35e-04 27_[-1(2.88e-05)]_9_[-1(9.48e-07)]_\ 34 chrIV:1267534-1267733 2.84e-01 100 chrXV:159089-160914 4.66e-03 20_[+2(1.34e-05)]_59 chrXV:379596-380204 7.21e-01 100 chrX:156084-156184 3.47e-01 100 chrXVI:131612-132301 1.89e-01 100 chrIV:1162725-1164782 5.69e-04 45_[-1(1.07e-05)]_1_[+2(3.64e-05)]_\ 18 chrIII:137456-139489 2.42e-08 25_[+1(2.17e-08)]_34_[+2(2.61e-07)]_\ 5 chrXIII:122855-124383 7.32e-01 100 chrXIII:120436-121200 3.25e-06 11_[+2(6.92e-09)]_68 chrXIII:507338-507685 9.11e-01 100 chrII:554020-554212 2.93e-01 100 chrV:70165-70412 6.49e-01 100 chrVII:806016-807899 2.28e-02 44_[+3(6.19e-05)]_35 chrXII:371036-371893 6.08e-02 100 chrX:160669-160769 2.50e-02 22_[+1(3.16e-05)]_63 chrII:167137-167328 7.25e-04 33_[-3(2.09e-05)]_46 chrVII:1048221-1050199 3.93e-02 30_[-1(5.90e-05)]_55 chrXVI:153926-154503 7.87e-01 100 chrXI:430484-431501 4.21e-01 100 chrX:461152-461252 3.62e-01 100 chrIV:624304-625068 7.45e-01 100 chrIX:96610-97670 5.13e-01 100 chrXV:29099-33848 9.21e-07 42_[-2(1.41e-06)]_6_[+1(1.09e-06)]_\ 16 chrXII:257567-259621 7.56e-01 100 chrIV:335649-336413 5.44e-01 100 chrXV:1027738-1028947 7.09e-01 100 chrXII:342321-343085 9.39e-02 44_[+1(6.43e-05)]_41 chrIV:1492062-1493219 9.79e-01 100 chrVII:970629-974071 7.01e-04 55_[+2(4.88e-06)]_24 chrVII:747792-748163 6.66e-01 100 chrX:519170-519270 1.63e-01 15_[-1(7.59e-05)]_70 chrVI:43217-44580 6.40e-02 100 chrXV:720066-720575 3.88e-02 63_[+2(1.78e-05)]_16 chrXV:718266-718648 6.54e-01 100 chrII:306948-307420 9.17e-01 100 chrXV:304509-306370 7.07e-01 100 chrXVI:306064-306277 3.80e-01 100 chrV:163502-164266 8.58e-01 100 chrIX:210550-210947 5.61e-01 100 chrVII:440711-443278 3.20e-01 100 chrXII:919249-922486 3.18e-01 100 chrV:413378-413784 5.05e-01 100 chrXVI:89681-90445 6.55e-01 100 chrXIV:493556-495196 5.61e-01 100 chrX:381161-381261 4.82e-03 26_[+1(5.56e-06)]_59 chrXII:342052-342816 2.63e-01 100 chrXII:329794-330558 9.19e-01 100 chrIV:1319361-1319690 2.37e-01 100 chrVII:130873-131342 6.52e-04 63_[-2(5.43e-06)]_16 chrXV:827956-828392 9.41e-02 60_[-3(5.73e-05)]_19 chrIV:308226-310334 8.31e-03 17_[+1(1.31e-05)]_68 chrX:208964-209064 2.05e-01 100 chrXV:91683-93104 1.60e-04 27_[+3(6.93e-05)]_3_[-3(4.88e-06)]_\ 28 chrV:269035-270374 9.75e-01 100 chrVIII:410810-411813 7.36e-01 100 chrXVI:351447-352472 5.16e-01 100 chrXIII:388609-391174 6.42e-01 100 chrVIII:231404-231818 3.77e-02 4_[-2(2.34e-05)]_75 chrVII:913900-914664 6.01e-01 100 chrXII:1040034-1041581 5.21e-01 100 chrXVI:718252-719634 3.41e-01 100 chrXII:636535-640356 5.80e-01 100 chrIV:1325070-1325464 4.10e-01 100 chrIII:162070-163487 4.95e-01 100 chrXV:109956-111093 1.11e-01 100 chrI:130578-132041 4.70e-05 68_[+2(1.59e-06)]_11 chrIX:98082-99630 5.82e-02 29_[-1(2.17e-05)]_56 chrIV:1354387-1355738 5.35e-02 17_[-1(2.62e-05)]_68 chrXVI:641892-643801 2.03e-01 100 chrX:63338-63438 3.01e-01 100 chrXIII:751662-752198 4.86e-02 100 chrVII:373773-374499 2.18e-02 44_[+3(3.59e-05)]_35 chrVII:751388-751769 5.75e-01 100 chrIV:915222-916451 2.49e-01 100 chrVII:901541-902305 1.02e-02 25_[-1(2.62e-05)]_60 chrII:410124-410639 8.97e-02 100 chrIV:1317444-1318208 3.65e-03 57_[-3(9.59e-07)]_22 chrXI:610237-611001 8.76e-01 100 chrV:197452-198216 4.67e-01 100 chrXVI:376840-377551 5.04e-01 100 chrXIV:198686-199450 1.02e-01 44_[-1(3.16e-05)]_41 chrIII:229370-230374 3.18e-02 100 chrXV:311084-311358 3.93e-03 63_[-2(1.00e-05)]_16 chrII:305298-305509 2.72e-03 72_[+3(2.01e-06)]_7 chrXV:503607-503956 2.17e-01 100 chrV:545447-546891 7.32e-03 19_[+3(9.73e-06)]_60 chrII:162909-164027 3.34e-03 18_[-1(2.13e-06)]_67 chrVII:726766-728461 7.50e-04 13_[-2(1.62e-05)]_25_[+1(5.42e-05)]_\ 26 chrXVI:822409-824460 2.30e-02 41_[-2(1.95e-05)]_38 chrXVI:644172-645152 3.86e-02 100 chrVII:801186-801942 8.21e-01 100 chrVII:310700-312416 1.55e-02 59_[+1(8.66e-06)]_26 chrXIV:302453-303835 4.03e-03 17_[+1(3.47e-05)]_68 chrIII:176918-178937 4.05e-01 100 chrXII:545919-547556 2.91e-01 100 chrXVI:85537-86015 9.08e-01 100 chrVIII:553173-553775 8.89e-01 100 chrXII:498683-499839 5.34e-05 9_[-1(8.24e-05)]_37_[-2(1.41e-06)]_\ 18 chrIV:232816-233195 3.32e-02 38_[-3(2.44e-05)]_41 chrVI:222802-223972 4.09e-01 100 chrII:556087-558652 2.26e-01 100 chrI:65147-65764 1.82e-03 50_[-3(2.39e-06)]_29 chrVII:541466-541867 1.74e-01 100 chrVII:786868-788364 2.24e-02 100 chrII:478766-479504 5.77e-01 100 chrV:138573-140619 4.05e-01 100 chrXV:411030-411411 6.74e-01 100 chrIV:1488871-1490122 5.22e-01 100 chrIV:155386-156060 2.20e-03 30_[-3(1.06e-06)]_49 chrX:120194-120294 7.16e-02 60_[+3(7.19e-05)]_19 chrX:90528-90628 9.09e-03 20_[-3(1.04e-05)]_59 chrVII:124346-124674 5.26e-02 100 chrIII:60592-60837 3.78e-01 100 chrVII:474066-474657 4.90e-02 64_[+3(1.87e-05)]_15 chrXIV:284279-285043 6.94e-01 100 chrXIII:741235-741999 7.12e-07 47_[+2(1.24e-09)]_[+2(5.16e-07)]_11 chrXII:1017638-1019125 3.86e-01 100 chrXI:217119-218792 2.70e-02 41_[+1(9.61e-06)]_44 chrIV:579202-580864 2.23e-03 34_[+1(3.47e-05)]_51 chrIV:322032-323794 5.01e-07 11_[-3(1.54e-06)]_68 chrV:58863-59293 2.97e-05 47_[-2(1.59e-06)]_32 chrXII:819107-820592 4.68e-01 100 chrXVI:701686-702438 7.99e-01 100 chrXIV:251858-252750 2.88e-01 100 chrXII:626418-626990 4.42e-01 100 chrXIII:43710-44474 9.78e-02 100 chrXIII:229148-229912 4.28e-03 79_[+3(6.38e-07)] chrXIV:500801-503038 1.51e-04 47_[+2(8.01e-08)]_32 chrXIV:715841-716782 2.64e-01 100 chrXVI:75213-76449 1.32e-01 100 chrIV:808611-809503 5.08e-07 41_[-2(4.21e-08)]_38 chrVII:804286-805463 6.31e-01 100 chrXIII:650969-653032 5.36e-01 100 chrX:227602-227702 9.76e-01 100 chrIV:927688-928064 3.18e-02 57_[+1(1.19e-05)]_28 chrII:563104-564739 1.75e-08 48_[-2(9.34e-08)]_3_[-1(5.40e-07)]_\ 13 chrIV:1080977-1081741 5.33e-03 9_[-2(9.77e-07)]_70 chrIV:1328707-1330169 5.86e-01 100 chrXIV:216119-217164 6.20e-02 100 chrXVI:370825-372954 4.35e-01 100 chrV:60902-62052 7.05e-01 100 chrXII:805630-807231 3.06e-01 100 chrXIV:256525-256806 9.82e-01 100 chrIV:592058-592822 2.24e-01 100 chrIV:768119-769223 1.12e-01 100 chrXVI:812193-812769 4.01e-01 100 chrII:429533-430804 6.61e-02 59_[-1(7.59e-05)]_26 chrXIII:701577-703454 4.65e-02 2_[+1(4.16e-05)]_[+1(3.16e-05)]_68 chrVII:610394-611585 8.38e-01 100 chrIV:591978-592431 8.52e-03 28_[+3(1.84e-06)]_51 chrXV:880284-880750 3.22e-01 100 chrII:219686-221104 1.04e-03 61_[-3(1.54e-06)]_18 chrXIII:743111-743340 7.17e-03 53_[-3(1.49e-05)]_26 chrII:427645-429154 2.66e-04 11_[+3(5.29e-05)]_46_[+2(2.25e-06)]_\ 1 chrII:373330-375975 5.61e-02 100 chrXIII:557396-558607 1.64e-01 100 chrXII:941302-941737 6.30e-03 55_[+1(1.97e-05)]_30 chrIV:732857-733621 2.21e-01 100 chrXVI:746293-746839 6.18e-01 100 chrIV:542593-543357 3.76e-01 100 chrVII:55694-56294 7.66e-01 100 chrXIII:483788-486150 3.98e-01 100 chrVIII:225687-225989 9.95e-01 100 chrIX:254856-257284 1.89e-04 11_[+2(2.61e-07)]_68 chrVIII:233339-233725 8.07e-01 100 chrXV:551850-552728 5.46e-01 100 chrII:144917-145782 1.80e-01 100 chrXIII:23587-26094 2.28e-01 100 chrVI:55361-56035 9.13e-01 100 chrX:598852-598952 7.21e-01 100 chrVIII:504075-505768 6.19e-02 100 chrXII:242003-243811 1.34e-01 100 chrXII:930501-932002 3.48e-01 100 chrXIV:232824-233588 1.05e-01 100 chrXVI:785886-787917 6.21e-01 100 chrXII:875969-876364 7.80e-01 100 chrXV:648355-649196 2.30e-01 100 chrXV:87263-88511 1.01e-06 14_[-2(1.70e-07)]_43_[-3(2.01e-06)]_\ 1 chrVII:703516-704280 4.40e-03 57_[-3(6.68e-05)]_22 chrIV:1241129-1242059 9.80e-02 100 chrXI:384307-384836 8.36e-02 4_[+2(4.31e-05)]_75 chrXV:255999-256361 1.80e-01 100 chrXI:519139-521204 2.02e-02 100 chrVII:1057582-1058839 3.53e-01 100 chrXIV:87631-89848 8.84e-01 100 chrXII:201529-202804 4.16e-02 68_[-2(1.95e-05)]_11 chrXVI:811896-812273 5.66e-03 26_[-1(2.13e-06)]_59 chrXV:680282-681018 6.95e-05 37_[+3(1.57e-07)]_42 chrIX:266823-267449 4.03e-01 100 chrII:300764-301673 8.84e-02 100 chrVI:52933-54962 2.70e-03 10_[-1(1.88e-06)]_75 chrXVI:491972-492573 2.23e-02 34_[-2(1.62e-05)]_45 chrVII:904622-904992 1.78e-03 22_[-3(1.40e-06)]_57 chrXII:837455-839582 1.74e-01 100 chrVII:920357-922138 7.68e-03 38_[-2(3.96e-05)]_41 chrXVI:797662-798043 1.10e-03 22_[-3(3.68e-07)]_57 chrVII:559219-560127 3.76e-01 100 chrXIV:440038-440336 2.57e-01 100 chrV:266125-268364 3.38e-02 100 chrI:139344-140003 4.27e-05 39_[+2(3.34e-05)]_2_[+1(5.56e-06)]_\ 23 chrX:150894-150994 1.77e-02 54_[-3(3.89e-06)]_25 chrIV:1442765-1443130 4.18e-01 100 chrIV:1421518-1421854 3.32e-01 100 chrXII:505992-507476 6.73e-02 16_[+1(3.47e-05)]_69 chrXI:126178-126488 6.28e-01 100 chrIV:1267327-1267712 3.88e-01 100 chrX:123800-123900 6.71e-01 100 chrVII:555579-557661 9.50e-01 100 chrVII:344142-345406 2.45e-01 100 chrV:462609-462881 1.01e-01 100 chrXIV:167122-167970 5.30e-03 60_[+1(6.99e-05)]_25 chrXIV:655233-656411 7.35e-02 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************