Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.06568
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.064284
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.095693
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.035384
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.077189
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background
Finished invoke:
  name: bg  status: 0  time: 0.024805
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 934.839663
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 110.800063
Invoking:
  centrimo -seqlen 410 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.278208
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.516859
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background -primary SSCBYWAMCMACTRSGCCAHRNRVSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.647843
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background -primary GGRRTCGAACCSVKGAYCTYM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.596542
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background -primary HACACCCRTACAYCHYWH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.580531
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background -primary BTAAGGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.313326
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.282021
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background -primary CCGTGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.289474
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background -primary ARARAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.510736
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background -primary ATAGTDTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.314902
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.327842
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background -primary CTCTCSCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.239311
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background -primary ATCTTGAS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.217577
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background -primary AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.295728
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background -primary AATCTTYT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.320215
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background -primary CCAGWTCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.316141
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background -primary ACTSACGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.296334
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background -primary GGYTATCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo16  status: 0  time: 0.275766
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background -primary ACCGARAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml
Finished invoke:
  name: spamo17  status: 0  time: 0.256072
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background --motif SSCBYWAMCMACTRSGCCAHRNRVSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.270692
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background --motif GGRRTCGAACCSVKGAYCTYM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.269867
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background --motif HACACCCRTACAYCHYWH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.271186
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background --motif BTAAGGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.168194
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.154536
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background --motif CCGTGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.16875
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background --motif ARARAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.162016
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background --motif ATAGTDTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.175064
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.163475
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background --motif CTCTCSCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.185761
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background --motif ATCTTGAS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.162678
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background --motif AGTCAKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.157638
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background --motif AATCTTYT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.158386
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background --motif CCAGWTCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.16041
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background --motif ACTSACGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.152728
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background --motif GGYTATCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa
Finished invoke:
  name: fimo16  status: 0  time: 0.150362
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/background --motif ACCGARAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/BY4742--PDR1.fa
Finished invoke:
  name: fimo17  status: 0  time: 0.164342
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--PDR1/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.233115
Done