******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MOT3/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrXV:31-350 1.0000 100 chrVIII:411088-411670 1.0000 100 chrX:223919-224019 1.0000 100 chrX:115763-115863 1.0000 100 chrV:354736-355324 1.0000 100 chrVIII:556586-557259 1.0000 100 chrVII:561430-561960 1.0000 100 chrXII:498808-499667 1.0000 100 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1.0000 100 chrXII:515174-515638 1.0000 100 chrXII:214726-215151 1.0000 100 chrVII:278014-278344 1.0000 100 chrVII:364163-364408 1.0000 100 chrIV:580072-580606 1.0000 100 chrXIII:733080-733206 1.0000 100 chrIV:118371-118704 1.0000 100 chrXII:5386-5954 1.0000 100 chrXIV:495165-495598 1.0000 100 chrIV:332056-332520 1.0000 100 chrXVI:572075-572544 1.0000 100 chrXII:263659-263889 1.0000 100 chrIX:68204-68545 1.0000 100 chrVII:807147-807378 1.0000 100 chrX:531632-531732 1.0000 100 chrX:453463-453563 1.0000 100 chrIV:45838-46061 1.0000 100 chrII:197303-197917 1.0000 100 chrXVI:701289-701490 1.0000 100 chrXII:710585-710887 1.0000 100 chrIV:645010-645422 1.0000 100 chrXIII:923349-923813 1.0000 100 chrIII:107295-107720 1.0000 100 chrVII:1050219-1050519 1.0000 100 chrXV:1016807-1017271 1.0000 100 chrVII:475924-476388 1.0000 100 chrII:326645-327063 1.0000 100 chrVIII:134142-134525 1.0000 100 chrXIV:499337-499642 1.0000 100 chrV:23513-23891 1.0000 100 chrX:541300-541400 1.0000 100 chrXII:796971-797393 1.0000 100 chrXVI:378640-379005 1.0000 100 chrXIV:625947-626411 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MOT3/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MOT3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MOT3/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 552 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 55200 N= 552 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.298 C 0.202 G 0.202 T 0.298 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MOT3/background): A 0.308 C 0.192 G 0.192 T 0.308 ******************************************************************************** ******************************************************************************** MOTIF RGRTCMBSGGTTCGATYCCSV MEME-1 width = 21 sites = 99 llr = 1680 E-value = 1.9e-337 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGRTCMBSGGTTCGATYCCSV MEME-1 Description -------------------------------------------------------------------------------- Simplified A 6252:4:12::::2a2:::13 pos.-specific C 11:18544::::a::25a754 probability G 365::1358a:::8:2:::44 matrix T :1:72:31::aa:::45:2:: bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 **** * * Relative 1.4 * ****** * Entropy 1.2 * * ******* * (24.5 bits) 1.0 * * ******* **** 0.7 *** ** ******** ***** 0.5 *************** ***** 0.2 *************** ***** 0.0 --------------------- Multilevel AGGTCCCGGGTTCGATTCCCG consensus G AATAGC C TGC sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTCMBSGGTTCGATYCCSV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIII:123413-123828 - 16 1.43e-12 AGGGTGCGGG AGGTCCCGGGTTCGAGTCCCG GCTCGCCCCA chrXIV:631694-632107 - 5 1.43e-12 AGGGTGCGGG AGGTCCCGGGTTCGAGTCCCG GCTC chrXIV:569719-570109 - 12 3.22e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrV:551107-551532 - 25 3.22e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAA chrXII:734605-735027 + 80 3.22e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC chrVII:738934-739365 + 67 3.22e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrIX:183283-183707 - 4 3.22e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAG chrXVI:819302-819803 + 71 3.22e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCA chrIX:210451-210930 + 69 3.22e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXVI:880067-880567 - 38 3.22e-11 AATAACGCGG GGATCAGCGGTTCGATCCCGC TAGAGACCAT chrXII:214726-215151 - 4 5.51e-11 TGCAAGGAAG AGGTCATCGGTTCGATTCCGG TTG chrI:166052-166518 + 75 5.51e-11 TGCAAGGAAG AGGTCATCGGTTCGATTCCGG TTGCG chrVII:876198-876678 + 49 9.23e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrVII:185547-185975 - 12 9.23e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrIV:1201549-1202022 + 58 9.23e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrIV:1352298-1352735 - 9 9.23e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGC chrX:414776-414876 + 63 9.23e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTA chrV:135213-135695 - 30 9.23e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrVI:226513-226934 - 24 9.23e-11 CTTAATCATA AGGTTAGGGGTTCGAGCCCCC TACAGGGCTT chrII:197303-197917 - 78 1.09e-10 TT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAA chrX:531632-531732 + 16 1.09e-10 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAG chrXVI:572075-572544 + 51 1.09e-10 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAA chrIV:83372-83766 + 70 1.09e-10 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCGCAA chrXIII:183754-184149 - 6 1.09e-10 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTG chrXV:281972-282380 + 79 1.09e-10 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG G chrXVI:860179-860616 + 73 1.09e-10 TGCCATCGTT GGGCCCCCGGTTCGATTCCGG GCTTGCG chrXV:438443-438924 + 76 3.26e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATG chrXII:875193-875634 + 79 3.26e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC T chrVII:115296-115772 + 70 3.26e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrVIII:475515-475958 - 29 3.26e-10 CACACGGCAA AGGTCCCGAGTTCGATCCTCG GTTGGAACAT chrIV:359382-359848 + 78 3.26e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TA chrXI:578779-579264 + 60 3.26e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGGAGT chrXVI:769014-769502 - 8 3.26e-10 GGATACCGAA ATGTCAGGGGTTCGAGCCCCC TATGAGG chrIV:1075316-1075726 - 10 3.26e-10 CACACGGCAA AGGTCCCGAGTTCGATCCTCG GTTGGAACA chrVII:328384-328949 + 9 4.36e-10 TCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrXI:140843-141274 - 19 4.36e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrV:487172-487579 - 15 4.36e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrV:176899-177393 + 45 4.36e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrX:115763-115863 - 15 4.36e-10 TTTCACCGTG GAGACCGGGGTTCGACTCCCC GTATCGGAGT chrXIV:96054-96507 - 20 5.77e-10 TTCCAAGGTG GGGACACGGGTTCGATTCTCG TACCGCTCAA chrVII:779422-779846 + 74 5.77e-10 TTCCAAGGTG GGGACACGGGTTCGATTCTCG TACCGC chrII:405656-406172 + 56 1.84e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrX:374264-374364 - 46 1.84e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrVII:736109-736634 + 61 1.84e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGT chrVII:405258-405736 + 65 1.84e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrVII:828498-828991 - 38 1.84e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrX:355177-355277 + 26 1.84e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGC chrXI:162247-162749 - 48 1.84e-09 TCTAATCAGA AGATTATGGGTTCGACCCCCA TCGTGAGTGT chrIV:488512-489088 - 56 2.08e-09 TACACGGCGA AGATCCCGAGTTCGAACCTCG GTTGGATCAG chrVIII:134142-134525 + 80 2.63e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGG chrV:250093-250532 + 66 2.63e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTAGGACCTT chrIV:410196-410604 + 72 2.63e-09 AGCATGGGAG AGGTCTCCGGTTCGATTCCGG ACTCGTCC chrIV:520782-521195 + 76 2.63e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTAG chrIV:802566-803004 - 5 2.63e-09 TTTGATCCGG ACAACCCCGGTTCGAATCCGG GTAG chrV:130926-131350 - 3 2.63e-09 TTTGATCCGA ACAACCCCGGTTCGAATCCGG GT chrXV:663590-664058 - 47 5.18e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCGT chrVII:823284-823717 + 76 5.18e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGA chrXII:687635-688118 - 42 5.18e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXIII:420315-420852 - 64 5.18e-09 AACACGCAGA ACGTCCCCAGTTCGATCCTGG GCGAAATCAT chrXV:594202-594616 - 4 5.78e-09 TCCCAAGCAT GAGGCCCGGGTTCGATTCCCG GCT chrXIV:560498-560960 - 23 1.08e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrVIII:115922-116379 - 16 1.08e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrXIV:104605-105106 + 43 1.08e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrIV:434001-434554 - 46 1.08e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAT chrIX:174844-175338 + 33 1.08e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTGGAAGCAA chrX:58947-59047 - 4 1.08e-08 AGTAATGTGG AGATCATCGGTTCAAATCCGA TTG chrXIII:808087-808520 - 2 1.93e-08 TCTGATCCGA ACAACCCCAGTTCGAATCCGG G chrX:422743-422843 + 38 5.62e-08 CATAATCTGA AGGTCGAGAGTTCGAACCTCC CCTGGAGCAC chrXV:976209-976715 + 52 5.62e-08 CATAATCTGA AGGTCGAGAGTTCGAACCTCC CCTGGAGCAA chrX:541300-541400 + 75 6.64e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGC chrXIII:168591-169105 + 56 6.64e-08 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGGAGAT chrVII:544340-544848 - 42 6.64e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrIX:324150-324560 - 7 6.64e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCG chrX:542794-542894 - 1 6.64e-08 CGAAATCTTG AGATCGGGCGTTCGACTCGCC chrXII:426957-427351 + 70 6.64e-08 TGTCGCGTGC CAGATCGGGGTTCAATTCCCC GTCGCGGAGA chrVI:210448-210895 - 7 6.64e-08 CGAAATCTTG AGATCGGGCGTTCGACTCGCC CCCGGG chrVIII:237677-238132 - 3 1.16e-07 AGTTATCTGG AGGTCCTGTGTTCGATCCACA GA chrIV:1095135-1095646 - 39 1.16e-07 AGATATCTGG AGGTCCTGTGTTCGATCCACA GAGTTCGCAT chrXV:487250-487673 + 72 1.25e-07 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTC chrVI:137289-137737 - 32 1.25e-07 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrVII:730936-731405 + 61 1.25e-07 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGGTCGT chrXIV:632411-632828 + 74 1.25e-07 GTTAATCGCA AGATCGTGAGTTCAACCCTCA CTGGGG chrV:492188-492625 - 5 2.59e-07 ACGAACCAGA AGATTCCAGGTTCAAGTCCTG GCGG chrXI:490770-491199 + 77 2.59e-07 ACGAACCAGA AGATTCCAGGTTCAAGTCCTG GCG chrVII:706936-707385 - 7 2.59e-07 GCAAATCTGT TGGTCCTTAGTTCGATCCTGA GTGCGA chrXVI:775616-776025 - 4 2.59e-07 GCAAATCTGT TGGTCCTTAGTTCGATCCTGA GTG chrII:642858-643266 - 4 2.59e-07 GCAAATCTGT TGGTCCTTAGTTCGATCCTGA GTG chrIV:619775-620239 - 21 2.59e-07 ACGAACCAGA AGATTCCAGGTTCAAGTCCTG GCGGGGAAGA chrV:434366-434812 - 11 2.77e-07 TGTGGCCGAT GAAACCCTGGTTCGATTCTAG GAGATGGCAT chrVII:319582-320040 + 62 2.77e-07 TGTGGCCGAT GAAACCCTGGTTCGATTCTAG GAGATGGCAT chrXIII:362867-363307 + 69 2.77e-07 TGTGGCCGAT GAAACCCTGGTTCGATTCTAG GAGATGGCAT chrVII:110444-110891 - 17 2.77e-07 TGTGGCCGAT GAAACCCTGGTTCGATTCTAG GAGATGGCAA chrXI:313251-313654 - 8 2.77e-07 TGTGGCCGAT GAAACCCTGGTTCGATTCTAG GAGATGG chrXVI:55869-56478 - 55 4.43e-07 TGCAATCGAA GGGTTGCAGGTTCAATTCCTG TCCGTTTCAA chrV:99931-100387 + 66 8.75e-07 CATAACCCTG ATGTCCTCGGATCGAAACCGA GCGGCGCTAA chrX:517683-517783 - 5 8.75e-07 CATAACCCTG ATGTCCTCGGATCGAAACCGA GCGG chrII:9392-9837 - 78 1.63e-06 AA GGATGCGAGGTTCGAACTCGC GCGGACAACC chrXIII:408524-408685 - 74 1.63e-06 CAGTCG GAGTCAAGGATTCGAGTCGCG CCGCCGCGTA chrIV:45252-45447 + 80 2.13e-06 TGCTGACAAC CAAACCACCGTTCAATTCCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTCMBSGGTTCGATYCCSV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123413-123828 1.4e-12 15_[-1]_64 chrXIV:631694-632107 1.4e-12 4_[-1]_75 chrXIV:569719-570109 3.2e-11 11_[-1]_68 chrV:551107-551532 3.2e-11 24_[-1]_55 chrXII:734605-735027 3.2e-11 79_[+1] chrVII:738934-739365 3.2e-11 66_[+1]_13 chrIX:183283-183707 3.2e-11 3_[-1]_76 chrXVI:819302-819803 3.2e-11 70_[+1]_9 chrIX:210451-210930 3.2e-11 68_[+1]_11 chrXVI:880067-880567 3.2e-11 37_[-1]_42 chrXII:214726-215151 5.5e-11 3_[-1]_76 chrI:166052-166518 5.5e-11 74_[+1]_5 chrVII:876198-876678 9.2e-11 48_[+1]_31 chrVII:185547-185975 9.2e-11 11_[-1]_68 chrIV:1201549-1202022 9.2e-11 57_[+1]_22 chrIV:1352298-1352735 9.2e-11 8_[-1]_71 chrX:414776-414876 9.2e-11 62_[+1]_17 chrV:135213-135695 9.2e-11 29_[-1]_50 chrVI:226513-226934 9.2e-11 23_[-1]_56 chrII:197303-197917 1.1e-10 77_[-1]_2 chrX:531632-531732 1.1e-10 15_[+1]_64 chrXVI:572075-572544 1.1e-10 50_[+1]_29 chrIV:83372-83766 1.1e-10 69_[+1]_10 chrXIII:183754-184149 1.1e-10 5_[-1]_74 chrXV:281972-282380 1.1e-10 78_[+1]_1 chrXVI:860179-860616 1.1e-10 72_[+1]_7 chrXV:438443-438924 3.3e-10 75_[+1]_4 chrXII:875193-875634 3.3e-10 78_[+1]_1 chrVII:115296-115772 3.3e-10 69_[+1]_10 chrVIII:475515-475958 3.3e-10 28_[-1]_51 chrIV:359382-359848 3.3e-10 77_[+1]_2 chrXI:578779-579264 3.3e-10 59_[+1]_20 chrXVI:769014-769502 3.3e-10 7_[-1]_72 chrIV:1075316-1075726 3.3e-10 9_[-1]_70 chrVII:328384-328949 4.4e-10 8_[+1]_71 chrXI:140843-141274 4.4e-10 18_[-1]_61 chrV:487172-487579 4.4e-10 14_[-1]_65 chrV:176899-177393 4.4e-10 44_[+1]_35 chrX:115763-115863 4.4e-10 14_[-1]_65 chrXIV:96054-96507 5.8e-10 19_[-1]_60 chrVII:779422-779846 5.8e-10 73_[+1]_6 chrII:405656-406172 1.8e-09 55_[+1]_24 chrX:374264-374364 1.8e-09 45_[-1]_34 chrVII:736109-736634 1.8e-09 60_[+1]_19 chrVII:405258-405736 1.8e-09 64_[+1]_15 chrVII:828498-828991 1.8e-09 37_[-1]_42 chrX:355177-355277 1.8e-09 25_[+1]_54 chrXI:162247-162749 1.8e-09 47_[-1]_32 chrIV:488512-489088 2.1e-09 55_[-1]_24 chrVIII:134142-134525 2.6e-09 79_[+1] chrV:250093-250532 2.6e-09 65_[+1]_14 chrIV:410196-410604 2.6e-09 71_[+1]_8 chrIV:520782-521195 2.6e-09 75_[+1]_4 chrIV:802566-803004 2.6e-09 4_[-1]_75 chrV:130926-131350 2.6e-09 2_[-1]_77 chrXV:663590-664058 5.2e-09 46_[-1]_33 chrVII:823284-823717 5.2e-09 75_[+1]_4 chrXII:687635-688118 5.2e-09 41_[-1]_38 chrXIII:420315-420852 5.2e-09 63_[-1]_16 chrXV:594202-594616 5.8e-09 3_[-1]_76 chrXIV:560498-560960 1.1e-08 22_[-1]_57 chrVIII:115922-116379 1.1e-08 15_[-1]_64 chrXIV:104605-105106 1.1e-08 42_[+1]_37 chrIV:434001-434554 1.1e-08 45_[-1]_34 chrIX:174844-175338 1.1e-08 32_[+1]_47 chrX:58947-59047 1.1e-08 3_[-1]_76 chrXIII:808087-808520 1.9e-08 1_[-1]_78 chrX:422743-422843 5.6e-08 37_[+1]_42 chrXV:976209-976715 5.6e-08 51_[+1]_28 chrX:541300-541400 6.6e-08 74_[+1]_5 chrXIII:168591-169105 6.6e-08 55_[+1]_24 chrVII:544340-544848 6.6e-08 41_[-1]_38 chrIX:324150-324560 6.6e-08 6_[-1]_73 chrX:542794-542894 6.6e-08 [-1]_79 chrXII:426957-427351 6.6e-08 69_[+1]_10 chrVI:210448-210895 6.6e-08 6_[-1]_73 chrVIII:237677-238132 1.2e-07 2_[-1]_77 chrIV:1095135-1095646 1.2e-07 38_[-1]_41 chrXV:487250-487673 1.2e-07 71_[+1]_8 chrVI:137289-137737 1.2e-07 31_[-1]_48 chrVII:730936-731405 1.2e-07 60_[+1]_19 chrXIV:632411-632828 1.2e-07 73_[+1]_6 chrV:492188-492625 2.6e-07 4_[-1]_75 chrXI:490770-491199 2.6e-07 76_[+1]_3 chrVII:706936-707385 2.6e-07 6_[-1]_73 chrXVI:775616-776025 2.6e-07 3_[-1]_76 chrII:642858-643266 2.6e-07 3_[-1]_76 chrIV:619775-620239 2.6e-07 20_[-1]_59 chrV:434366-434812 2.8e-07 10_[-1]_69 chrVII:319582-320040 2.8e-07 61_[+1]_18 chrXIII:362867-363307 2.8e-07 68_[+1]_11 chrVII:110444-110891 2.8e-07 16_[-1]_63 chrXI:313251-313654 2.8e-07 7_[-1]_72 chrXVI:55869-56478 4.4e-07 54_[-1]_25 chrV:99931-100387 8.8e-07 65_[+1]_14 chrX:517683-517783 8.8e-07 4_[-1]_75 chrII:9392-9837 1.6e-06 77_[-1]_2 chrXIII:408524-408685 1.6e-06 73_[-1]_6 chrIV:45252-45447 2.1e-06 79_[+1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTCMBSGGTTCGATYCCSV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGRTCMBSGGTTCGATYCCSV width=21 seqs=99 chrIII:123413-123828 ( 16) AGGTCCCGGGTTCGAGTCCCG 1 chrXIV:631694-632107 ( 5) AGGTCCCGGGTTCGAGTCCCG 1 chrXIV:569719-570109 ( 12) GGATCAGCGGTTCGATCCCGC 1 chrV:551107-551532 ( 25) GGATCAGCGGTTCGATCCCGC 1 chrXII:734605-735027 ( 80) GGATCAGCGGTTCGATCCCGC 1 chrVII:738934-739365 ( 67) GGATCAGCGGTTCGATCCCGC 1 chrIX:183283-183707 ( 4) GGATCAGCGGTTCGATCCCGC 1 chrXVI:819302-819803 ( 71) GGATCAGCGGTTCGATCCCGC 1 chrIX:210451-210930 ( 69) GGATCAGCGGTTCGATCCCGC 1 chrXVI:880067-880567 ( 38) GGATCAGCGGTTCGATCCCGC 1 chrXII:214726-215151 ( 4) AGGTCATCGGTTCGATTCCGG 1 chrI:166052-166518 ( 75) AGGTCATCGGTTCGATTCCGG 1 chrVII:876198-876678 ( 49) AGGTTAGGGGTTCGAGCCCCC 1 chrVII:185547-185975 ( 12) AGGTTAGGGGTTCGAGCCCCC 1 chrIV:1201549-1202022 ( 58) AGGTTAGGGGTTCGAGCCCCC 1 chrIV:1352298-1352735 ( 9) AGGTTAGGGGTTCGAGCCCCC 1 chrX:414776-414876 ( 63) AGGTTAGGGGTTCGAGCCCCC 1 chrV:135213-135695 ( 30) AGGTTAGGGGTTCGAGCCCCC 1 chrVI:226513-226934 ( 24) AGGTTAGGGGTTCGAGCCCCC 1 chrII:197303-197917 ( 78) GGGCCCCCGGTTCGATTCCGG 1 chrX:531632-531732 ( 16) GGGCCCCCGGTTCGATTCCGG 1 chrXVI:572075-572544 ( 51) GGGCCCCCGGTTCGATTCCGG 1 chrIV:83372-83766 ( 70) GGGCCCCCGGTTCGATTCCGG 1 chrXIII:183754-184149 ( 6) GGGCCCCCGGTTCGATTCCGG 1 chrXV:281972-282380 ( 79) GGGCCCCCGGTTCGATTCCGG 1 chrXVI:860179-860616 ( 73) GGGCCCCCGGTTCGATTCCGG 1 chrXV:438443-438924 ( 76) ATGTCAGGGGTTCGAGCCCCC 1 chrXII:875193-875634 ( 79) ATGTCAGGGGTTCGAGCCCCC 1 chrVII:115296-115772 ( 70) ATGTCAGGGGTTCGAGCCCCC 1 chrVIII:475515-475958 ( 29) AGGTCCCGAGTTCGATCCTCG 1 chrIV:359382-359848 ( 78) ATGTCAGGGGTTCGAGCCCCC 1 chrXI:578779-579264 ( 60) ATGTCAGGGGTTCGAGCCCCC 1 chrXVI:769014-769502 ( 8) ATGTCAGGGGTTCGAGCCCCC 1 chrIV:1075316-1075726 ( 10) AGGTCCCGAGTTCGATCCTCG 1 chrVII:328384-328949 ( 9) GAGACCGGGGTTCGACTCCCC 1 chrXI:140843-141274 ( 19) GAGACCGGGGTTCGACTCCCC 1 chrV:487172-487579 ( 15) GAGACCGGGGTTCGACTCCCC 1 chrV:176899-177393 ( 45) GAGACCGGGGTTCGACTCCCC 1 chrX:115763-115863 ( 15) GAGACCGGGGTTCGACTCCCC 1 chrXIV:96054-96507 ( 20) GGGACACGGGTTCGATTCTCG 1 chrVII:779422-779846 ( 74) GGGACACGGGTTCGATTCTCG 1 chrII:405656-406172 ( 56) AGATTATGGGTTCGACCCCCA 1 chrX:374264-374364 ( 46) AGATTATGGGTTCGACCCCCA 1 chrVII:736109-736634 ( 61) AGATTATGGGTTCGACCCCCA 1 chrVII:405258-405736 ( 65) AGATTATGGGTTCGACCCCCA 1 chrVII:828498-828991 ( 38) AGATTATGGGTTCGACCCCCA 1 chrX:355177-355277 ( 26) AGATTATGGGTTCGACCCCCA 1 chrXI:162247-162749 ( 48) AGATTATGGGTTCGACCCCCA 1 chrIV:488512-489088 ( 56) AGATCCCGAGTTCGAACCTCG 1 chrVIII:134142-134525 ( 80) ACAACCCCGGTTCGAATCCGG 1 chrV:250093-250532 ( 66) ACAACCCCGGTTCGAATCCGG 1 chrIV:410196-410604 ( 72) AGGTCTCCGGTTCGATTCCGG 1 chrIV:520782-521195 ( 76) ACAACCCCGGTTCGAATCCGG 1 chrIV:802566-803004 ( 5) ACAACCCCGGTTCGAATCCGG 1 chrV:130926-131350 ( 3) ACAACCCCGGTTCGAATCCGG 1 chrXV:663590-664058 ( 47) ACGTCCCCAGTTCGATCCTGG 1 chrVII:823284-823717 ( 76) ACGTCCCCAGTTCGATCCTGG 1 chrXII:687635-688118 ( 42) ACGTCCCCAGTTCGATCCTGG 1 chrXIII:420315-420852 ( 64) ACGTCCCCAGTTCGATCCTGG 1 chrXV:594202-594616 ( 4) GAGGCCCGGGTTCGATTCCCG 1 chrXIV:560498-560960 ( 23) AGATCATCGGTTCAAATCCGA 1 chrVIII:115922-116379 ( 16) AGATCATCGGTTCAAATCCGA 1 chrXIV:104605-105106 ( 43) AGATCATCGGTTCAAATCCGA 1 chrIV:434001-434554 ( 46) AGATCATCGGTTCAAATCCGA 1 chrIX:174844-175338 ( 33) AGATCATCGGTTCAAATCCGA 1 chrX:58947-59047 ( 4) AGATCATCGGTTCAAATCCGA 1 chrXIII:808087-808520 ( 2) ACAACCCCAGTTCGAATCCGG 1 chrX:422743-422843 ( 38) AGGTCGAGAGTTCGAACCTCC 1 chrXV:976209-976715 ( 52) AGGTCGAGAGTTCGAACCTCC 1 chrX:541300-541400 ( 75) CAGATCGGGGTTCAATTCCCC 1 chrXIII:168591-169105 ( 56) AGATCGGGCGTTCGACTCGCC 1 chrVII:544340-544848 ( 42) CAGATCGGGGTTCAATTCCCC 1 chrIX:324150-324560 ( 7) CAGATCGGGGTTCAATTCCCC 1 chrX:542794-542894 ( 1) AGATCGGGCGTTCGACTCGCC 1 chrXII:426957-427351 ( 70) CAGATCGGGGTTCAATTCCCC 1 chrVI:210448-210895 ( 7) AGATCGGGCGTTCGACTCGCC 1 chrVIII:237677-238132 ( 3) AGGTCCTGTGTTCGATCCACA 1 chrIV:1095135-1095646 ( 39) AGGTCCTGTGTTCGATCCACA 1 chrXV:487250-487673 ( 72) AGATCGTGAGTTCAACCCTCA 1 chrVI:137289-137737 ( 32) AGATCGTGAGTTCAACCCTCA 1 chrVII:730936-731405 ( 61) AGATCGTGAGTTCAACCCTCA 1 chrXIV:632411-632828 ( 74) AGATCGTGAGTTCAACCCTCA 1 chrV:492188-492625 ( 5) AGATTCCAGGTTCAAGTCCTG 1 chrXI:490770-491199 ( 77) AGATTCCAGGTTCAAGTCCTG 1 chrVII:706936-707385 ( 7) TGGTCCTTAGTTCGATCCTGA 1 chrXVI:775616-776025 ( 4) TGGTCCTTAGTTCGATCCTGA 1 chrII:642858-643266 ( 4) TGGTCCTTAGTTCGATCCTGA 1 chrIV:619775-620239 ( 21) AGATTCCAGGTTCAAGTCCTG 1 chrV:434366-434812 ( 11) GAAACCCTGGTTCGATTCTAG 1 chrVII:319582-320040 ( 62) GAAACCCTGGTTCGATTCTAG 1 chrXIII:362867-363307 ( 69) GAAACCCTGGTTCGATTCTAG 1 chrVII:110444-110891 ( 17) GAAACCCTGGTTCGATTCTAG 1 chrXI:313251-313654 ( 8) GAAACCCTGGTTCGATTCTAG 1 chrXVI:55869-56478 ( 55) GGGTTGCAGGTTCAATTCCTG 1 chrV:99931-100387 ( 66) ATGTCCTCGGATCGAAACCGA 1 chrX:517683-517783 ( 5) ATGTCCTCGGATCGAAACCGA 1 chrII:9392-9837 ( 78) GGATGCGAGGTTCGAACTCGC 1 chrXIII:408524-408685 ( 74) GAGTCAAGGATTCGAGTCGCG 1 chrIV:45252-45447 ( 80) CAAACCACCGTTCAATTCCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTCMBSGGTTCGATYCCSV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 44160 bayes= 9.27838 E= 1.9e-337 98 -192 71 -334 -84 -92 175 -193 56 -1327 151 -1327 -41 -144 -424 116 -1327 200 -424 -47 35 137 -92 -493 -293 88 84 -23 -261 96 137 -193 -84 -225 200 -393 -493 -1327 237 -1327 -393 -1327 -1327 167 -1327 -1327 -1327 170 -1327 238 -1327 -1327 -68 -1327 207 -1327 170 -1327 -1327 -1327 -76 0 0 49 -393 131 -1327 71 -1327 237 -1327 -493 -393 188 -225 -41 -261 140 107 -293 -29 92 100 -1327 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTCMBSGGTTCGATYCCSV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 99 E= 1.9e-337 0.606061 0.050505 0.313131 0.030303 0.171717 0.101010 0.646465 0.080808 0.454545 0.000000 0.545455 0.000000 0.232323 0.070707 0.010101 0.686869 0.000000 0.767677 0.010101 0.222222 0.393939 0.494949 0.101010 0.010101 0.040404 0.353535 0.343434 0.262626 0.050505 0.373737 0.494949 0.080808 0.171717 0.040404 0.767677 0.020202 0.010101 0.000000 0.989899 0.000000 0.020202 0.000000 0.000000 0.979798 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.191919 0.000000 0.808081 0.000000 1.000000 0.000000 0.000000 0.000000 0.181818 0.191919 0.191919 0.434343 0.020202 0.474747 0.000000 0.505051 0.000000 0.989899 0.000000 0.010101 0.020202 0.707071 0.040404 0.232323 0.050505 0.505051 0.404040 0.040404 0.252525 0.363636 0.383838 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRTCMBSGGTTCGATYCCSV MEME-1 regular expression -------------------------------------------------------------------------------- [AG]G[GA][TA][CT][CA][CGT][GC]GGTTCGAT[TC]C[CT][CG][GCA] -------------------------------------------------------------------------------- Time 296.19 secs. ******************************************************************************** ******************************************************************************** MOTIF GCNNRDTKGKTARGGCGYMHGRYTNDWAA MEME-2 width = 29 sites = 138 llr = 1799 E-value = 5.5e-259 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCNNRDTKGKTARGGCGYMHGRYTNDWAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1123531:::1a522:2133:51:33387 pos.-specific C 26421::1:11::2:8:343216:211:1 probability G 62333426841:458:711174::3212: matrix T 12221363258:11:215231:3a244:2 bits 2.4 2.1 1.9 1.7 * * Relative 1.4 * * ** * Entropy 1.2 * * *** * * (18.8 bits) 1.0 * * * *** * * * 0.7 * ***** *** * ** * 0.5 ** ************ **** ** 0.2 *** *************** **** ** 0.0 ----------------------------- Multilevel GCCAAGTGGTTAAGGCGTCCGACTGTTAA consensus CTGGGTGT G GAA CAT GT AAAG sequence TC A C A T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCNNRDTKGKTARGGCGYMHGRYTNDWAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chrXVI:689365-689821 + 31 1.02e-11 GGGCACTATG GCCGAGTGGTTAAGGCGACAGACTTGAAA TCTGTTGGGC chrXIV:560498-560960 - 49 1.56e-11 GGCTTCTATG GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrVIII:115922-116379 - 42 1.56e-11 AGCTTCTATG GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrXV:113615-114000 + 54 1.56e-11 AGCTTCTATG GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrXIV:104605-105106 + 9 1.56e-11 CTTCTATG GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrIV:434001-434554 - 72 1.56e-11 . GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrX:58947-59047 - 30 1.56e-11 AGCTTCTATG GCCAAGTTGGTAAGGCGCCACACTAGTAA TGTGGAGATC chrXV:487250-487673 + 38 3.54e-11 GACTCCATGG CCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrVI:137289-137737 - 58 3.54e-11 GACTCCATGG CCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrXV:228130-228559 + 47 3.54e-11 GACTCCATGG CCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrIII:127529-127919 + 52 3.54e-11 GACTCCATGG CCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrVII:730936-731405 + 27 3.54e-11 GACTCCATGG CCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrXIV:632411-632828 + 40 3.54e-11 GACTCCATGG CCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrXIV:102521-102929 + 51 3.54e-11 GACTCCATGG CCAAGTTGGTTAAGGCGTGCGACTGTTAA TCGCAAGATC chrXV:438443-438924 + 19 7.72e-11 ATCCTTGTTA GCTCAGTTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrXII:875193-875634 + 22 7.72e-11 ATCCTTGTTA GCTCAGTTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrVII:115296-115772 + 13 7.72e-11 ATCCTTGTTA GCTCAGTTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrIV:359382-359848 + 21 7.72e-11 ATCCTTGTTA GCTCAGTTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrXI:578779-579264 + 3 7.72e-11 TA GCTCAGTTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrXVI:769014-769502 - 57 7.72e-11 ATCCTTGTTA GCTCAGTTGGTAGAGCGTTCGGCTTTTAA GCGCATTTGC chrVII:876198-876678 + 15 1.62e-10 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrVII:185547-185975 - 38 1.62e-10 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrIV:1201549-1202022 + 24 1.62e-10 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrIV:1352298-1352735 - 35 1.62e-10 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrX:414776-414876 + 29 1.62e-10 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrV:135213-135695 - 56 1.62e-10 AGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrVI:226513-226934 - 50 1.62e-10 TGCCTTGTTG GCGCAATCGGTAGCGCGTATGACTCTTAA TCATAAGGTT chrIV:437583-437991 + 44 2.31e-10 AGGCAACTTG GCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrXIII:259010-259441 - 27 2.31e-10 TGGCAACTTG GCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrII:226868-227378 + 11 2.31e-10 AGGCAACTTG GCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrIV:980798-981253 - 43 2.31e-10 AGGCAACTTG GCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrIV:1305441-1305855 + 41 2.31e-10 AGGCAACTTG GCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrVII:561430-561960 - 61 2.31e-10 TGGCAACTTG GCCGAGTGGTTAAGGCGAAAGATTAGAAA TCTTTTGGGC chrIII:227748-228197 + 29 7.60e-10 TGGCACTATG GCCGAGTGGTTAAGGCGAGAGACTCGAAT GGAATAAAAA chrVIII:358324-358761 - 40 1.05e-09 AGCGGATTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrII:36217-36620 + 39 1.05e-09 AGCGGATTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAACTTCGG chrVI:157762-158208 - 35 1.05e-09 AGCGGATTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrVIII:237677-238132 - 48 1.05e-09 AGCGGATTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrVII:440484-441082 - 37 1.05e-09 TGCGGATTTA GCTCAGTTGGGAGAGCGCCAGACTGAAGA AAAAACTTCG chrV:492188-492625 - 31 3.10e-09 ATTCCTCGTG GCCCAATGGTCACGGCGTCTGGCTACGAA CCAGAAGATT chrXI:490770-491199 + 43 3.10e-09 GTTCCTCGTG GCCCAATGGTCACGGCGTCTGGCTACGAA CCAGAAGATT chrIV:619775-620239 - 47 3.10e-09 GTTCCTCGTG GCCCAATGGTCACGGCGTCTGGCTACGAA CCAGAAGATT chrXII:214726-215151 - 30 4.17e-09 AGGGCACATG GCGCAGTTGGTAGCGCGCTTCCCTTGCAA GGAAGAGGTC chrI:166052-166518 + 41 4.17e-09 TGGGCACATG GCGCAGTTGGTAGCGCGCTTCCCTTGCAA GGAAGAGGTC chrXIV:569719-570109 - 38 7.42e-09 GGTCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrV:551107-551532 - 51 7.42e-09 GGTCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrXII:734605-735027 + 46 7.42e-09 GGTCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrVII:738934-739365 + 33 7.42e-09 GGTCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrXII:1051951-1052330 - 16 7.42e-09 GGTCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrIX:183283-183707 - 30 7.42e-09 GGTCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrXIV:602128-602520 + 48 7.42e-09 GGTCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrXVI:819302-819803 + 37 7.42e-09 GGTCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrIX:210451-210930 + 35 7.42e-09 GGTCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrXVI:880067-880567 - 64 7.42e-09 TCTCTTGG CCCAGTTGGTTAAGGCACCGTGCTAATAA CGCGGGGATC chrXI:46606-46995 - 20 1.13e-08 CAGCCCTTTT GGCCAAGTGGTAAGGCATCGCACTCGTAA TGCGGGGATC chrXII:592379-592816 - 34 7.77e-08 GGGAGTTTGG CCGAGTGGTTTAAGGCGTCAGATTTAGGT GGGTTTAACC chrX:617723-617823 + 43 7.77e-08 GGGAGTTTGG CCGAGTGGTTTAAGGCGTCAGATTTAGGT GGATTTAACC chrII:9392-9837 + 29 8.76e-08 GGAGGGTTGG CCGAGTGGTCTAAGGCGGCAGACTTAAGA TCTGTTGGAC chrX:424324-424424 - 3 8.76e-08 GGAGGGTTGG CCGAGTGGTCTAAGGCGGCAGACTTAAGA TC chrXIV:725997-726421 - 20 8.76e-08 GGAGGGTTGG CCGAGTGGTCTAAGGCGGCAGACTTAAGA TCTGTTGGAC chrIV:519546-519947 + 57 8.76e-08 GGAGGGTTGG CCGAGTGGTCTAAGGCGGCAGACTTAAGA TCTGTTGGAC chrII:405656-406172 + 22 9.87e-08 TAGCTCGCGT GGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrX:374264-374364 - 72 9.87e-08 . GGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrVII:736109-736634 + 27 9.87e-08 TAGCTCGCGT GGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrVII:405258-405736 + 31 9.87e-08 TAGCTCGCGT GGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrVII:828498-828991 - 64 9.87e-08 GCTCGCGT GGCGTAATGGCAACGCGTCTGACTTCTAA TCAGAAGATT chrV:99931-100387 + 32 1.11e-07 TAAGCGCCGT GGCGCAGTGGAAGCGCGCAGGGCTCATAA CCCTGATGTC chrX:517683-517783 - 31 1.11e-07 TAAGCGCCGT GGCGCAGTGGAAGCGCGCAGGGCTCATAA CCCTGATGTC chrXI:517788-518201 + 53 1.57e-07 TGGGCGTGTG GCGTAGTCGGTAGCGCGCTCCCTTAGCAT GGGAGAGGTC chrIV:410196-410604 + 38 1.57e-07 TGGGCGTGTG GCGTAGTCGGTAGCGCGCTCCCTTAGCAT GGGAGAGGTC chrX:538363-538463 + 50 1.57e-07 TGGTTCCGTT GGCGTAATGGTAACGCGTCTCCCTCCTAA GGAGAAGACT chrXVI:856681-857120 + 61 1.57e-07 CGGGCGTGTG GCGTAGTCGGTAGCGCGCTCCCTTAGCAT GGGAGAGGTC chrVII:706936-707385 - 33 2.21e-07 AAGCTCGTAT GGCGCAGTGGTAGCGCAGCAGATTGCAAA TCTGTTGGTC chrXVI:775616-776025 - 30 2.21e-07 AAGCTCGTAT GGCGCAGTGGTAGCGCAGCAGATTGCAAA TCTGTTGGTC chrII:642858-643266 - 30 2.21e-07 AAGCTCGTAT GGCGCAGTGGTAGCGCAGCAGATTGCAAA TCTGTTGGTC chrXII:628185-628671 + 15 5.28e-07 GGTTGTTTGG CCGAGCGGTCTAAGGCGCCTGATTCAAGA AAATATCTTG chrIV:1461541-1462043 - 49 5.28e-07 GGTTGTTTGG CCGAGCGGTCTAAGGCGCCTGATTCAAGA AAAAATCTTG chrXIII:168591-169105 + 8 5.86e-07 CGGTAGC CAAGTTGGTTTAAGGCGCAAGACTGTAAT TTACCACTAC chrXIII:837721-838126 + 66 5.86e-07 TCTCGGTAGC CAAGTTGGTTTAAGGCGCAAGACTGTAAT TTACCA chrX:354052-354152 + 37 5.86e-07 TCTCGGTAGC CAAGTTGGTTTAAGGCGCAAGACTGTAAT TTACCACTAC chrX:542794-542894 - 41 5.86e-07 TCTCGGTAGC CAAGTTGGTTTAAGGCGCAAGACTGTAAT TTATCACTAC chrVI:210448-210895 - 47 5.86e-07 TCTCGGTAGC CAAGTTGGTTTAAGGCGCAAGACTGTAAT TTACCACTAC chrIV:946093-946588 + 33 5.86e-07 TCTCGGTAGC CAAGTTGGTTTAAGGCGCAAGACTGTAAT TTATCACTAC chrX:422743-422843 + 4 6.50e-07 GTA GCTCAGTAGGAAGAGCGTCAGTCTCATAA TCTGAAGGTC chrX:390888-390988 - 24 6.50e-07 TGCTTCAGTA GCTCAGTAGGAAGAGCGTCAGTCTCATAA TCTGAAGGTC chrXV:976209-976715 + 18 6.50e-07 CGCTTCAGTA GCTCAGTAGGAAGAGCGTCAGTCTCATAA TCTGAAGGTC chrIV:884166-884642 + 16 8.84e-07 TGCTCGTGTA GCTCAGTGGTTAGAGCTTCGTGCTTATAG CAACATTCGG chrVII:205333-205767 + 31 1.45e-06 GGTTGTTTGG CCGAGCGGTCTAAGGCGCCTGATTCAAGC AATATCTTGA chrIV:341265-341628 + 34 1.60e-06 GCCTACTTAG GACTGGGTGTTAAAATGTACGGATGGAAA AGTAGACTCG chrXIII:808087-808520 - 27 2.34e-06 AGGTCCTATA GTGTAGTGGTTATCACTTTCGGTTCTGAT CCGAACAACC chrVIII:134142-134525 + 47 3.09e-06 CGGTCCTATA GTGTAGTGGTTATCACTTTCGGTTTTGAT CCGGACAACC chrV:250093-250532 + 33 3.09e-06 TGGTCCTATA GTGTAGTGGTTATCACTTTCGGTTTTGAT CCGGACAACC chrIV:520782-521195 + 43 3.09e-06 GGGTCCTATA GTGTAGTGGTTATCACTTTCGGTTTTGAT CCGGACAACC chrIV:802566-803004 - 30 3.09e-06 CGGTCCTATA GTGTAGTGGTTATCACTTTCGGTTTTGAT CCGGACAACC chrV:130926-131350 - 28 3.09e-06 AGGTTTTATA GTGTAGTGGTTATCACTTTCGGTTTTGAT CCGAACAACC chrVIII:466784-467196 + 58 4.06e-06 TAGCCTCCTT AGCTTAGTGGTAGAGCGTTGCACTTGTAA TGCAAAGGTC chrVII:661552-661963 + 50 4.06e-06 TTGCCTCCTT AGCTTAGTGGTAGAGCGTTGCACTTGTAA TGCAAAGGTC chrX:415817-415917 - 27 4.44e-06 TTGAAGCGGT GGCTCAATGGTAGAGCTTTCGACTCCAAT TAAATCTTGG chrVII:878567-878996 - 48 4.44e-06 ATGAAGCGGT GGCTCAATGGTAGAGCTTTCGACTCCAAT TAAATCTTGG chrVII:287195-287649 - 47 4.44e-06 ATGAAGCGGT GGCTCAATGGTAGAGCTTTCGACTCCAAT TAAATCTTGG chrXV:594202-594616 - 29 6.87e-06 CGCGCAAGTG GTTCAGTGGTTAGAATTTATGCTTCCCAA GCATGAGGCC chrVII:823284-823717 + 42 6.87e-06 GGTTTCGTGG TCTAGTCGGTTATGGCATCTGCTTAACAC GCAGAACGTC chrXI:308011-308408 - 20 6.87e-06 GGTTTCGTGG TCTAGTCGGTTATGGCATCTGCTTAACAC GCAGAACGTC chrXII:687635-688118 - 68 6.87e-06 GTGG TCTAGTCGGTTATGGCATCTGCTTAACAC GCAGAACGTC chrV:469262-469665 + 54 6.87e-06 GGTTTCGTGG TCTAGTCGGTTATGGCATCTGCTTAACAC GCAGAACGTC chrXIII:372307-372710 - 22 6.87e-06 GGTTTCGTGG TCTAGTCGGTTATGGCATCTGCTTAACAC GCAGAACGTC chrVIII:105483-105599 - 70 1.05e-05 TA GAAAATTGGTTAAGACATTATCTTAAAAA CGCGAAAAAT chrV:434366-434812 - 36 1.34e-05 CGCCATCTTA GTATAGTGGTTAGTACACATCGTTGTGGC CGATGAAACC chrVII:319582-320040 + 29 1.34e-05 AGCCATCTTA GTATAGTGGTTAGTACACATCGTTGTGGC CGATGAAACC chrXIII:362867-363307 + 36 1.34e-05 TGCCATCTTA GTATAGTGGTTAGTACACATCGTTGTGGC CGATGAAACC chrVII:110444-110891 - 42 1.34e-05 TGCCATCTTA GTATAGTGGTTAGTACACATCGTTGTGGC CGATGAAACC chrXI:313251-313654 - 33 1.34e-05 TGCCATCTTA GTATAGTGGTTAGTACACATCGTTGTGGC CGATGAAACC chrVII:483-754 - 66 1.34e-05 TATGGC GTAAAAGTGGTATAACGTATGCATTAAGA GCAGTTATAC chrXIII:145892-146310 - 30 1.70e-05 TGGTGCTATG GTGTATGGTGTATGGTGTATGGATGTACA AAAATGCTGT chrXI:108732-109103 - 33 2.32e-05 AACTAAATGT ACGGATGTTGTAATGTGTTTGGATGATAA TAGTCTTGAG chrXIV:495165-495598 + 51 3.64e-05 TTAAAGGAGG TTTGGGTGTGTATAGTGTACGGATTGAAT ATGTCAAGGA chrX:541300-541400 + 42 4.53e-05 ATCCGTGATA GTTTAATGGTCAGAATGGGCGCTTGTCGC GTGCCAGATC chrVII:544340-544848 - 67 4.53e-05 TGATA GTTTAATGGTCAGAATGGGCGCTTGTCGC GTGCCAGATC chrIX:324150-324560 - 32 4.53e-05 TTCCGTGATA GTTTAATGGTCAGAATGGGCGCTTGTCGC GTGCCAGATC chrXII:426957-427351 + 37 4.53e-05 ATCCGTGATA GTTTAATGGTCAGAATGGGCGCTTGTCGC GTGCCAGATC chrVIII:475515-475958 - 55 5.61e-05 TGTTCCAATA GTGTAGCGGCTATCACGTTGCCTTCACAC GGCAAAGGTC chrIII:123413-123828 - 49 6.91e-05 TTCAAAGGAG GGCGTGTGGTCTAGAGGTATGATTCTCGC TTAGGGTGCG chrXIV:631694-632107 - 38 6.91e-05 ACTTCTACCG GGCGTGTGGTCTAGAGGTATGATTCTCGC TTAGGGTGCG chrIV:579474-580186 - 35 6.91e-05 TTGGTTCTCC TCCGATAGGTTAACGTGTTATGTTATGAG CTTTGTGAAA chrVI:221716-222098 + 50 9.68e-05 CCGGAAAGGA ATTGGGTGTTAAAAATGTACGGGTGAAAA AAGTCTTATT chrX:157448-157548 + 23 1.10e-04 TATGGAGATG TATGGATGTATAAAGTGTACGGGTGTAAA CACATTGTCG chrXI:382173-382464 - 34 1.18e-04 GCGCGGGGTT TTGTGTTGGGTGTGATGTCCGGATGCAAC AGCAGCAAAG chrXVI:302679-303008 - 33 1.52e-04 TTTTTGCTTT ATGGGTGTTTTAGGATGTCTGGATGTACA AGTTAGCTGT chrXIV:444453-444777 + 43 1.62e-04 AAACAATAAT GTACGGATTTAAAGAGGTACGGATGGAGA CCGTAGAAAA chrVII:149096-149519 + 48 1.95e-04 AAAGAAATCA GTATGTATGGGTGGGTGTATGGATGCTGT AAGCACAGTC chrIV:579063-579407 - 18 2.20e-04 AAAAATGTTT GGGTCTACTTTATGGTTTATGGGTGGTAA AAGGCTTATA chrXIII:420315-420852 - 8 2.63e-04 TCAGCCGTTA CGGAAAGTTTTTTAACGCCCGTCTGGCGT CCCACCT chrX:90069-90169 - 29 2.79e-04 AAACAAGGCC ATGTATGGGTGAGAATGTCCAGGTGCAAA TTGAAAAGGA chrXIV:331670-331805 + 17 3.93e-04 GGAAGGAAAC GTAGAGGGGATAAGTTGGATAACTGTTAT TTCTTTTCAA chrXII:922100-922545 - 70 4.40e-04 AG ACGAGAATTGGAATATGTACGGGTGTCAA TTTCAAACGT chrII:604116-604523 - 13 4.64e-04 TATGAAAAAT GTACAGATGTGTAAATGTACGGATTAAAT CGTCGCAGCG chrIX:174844-175338 - 67 5.46e-04 ACTCA TTACAAGGTGTATGACGTGCCGAAGAAAA AAATTGCTTC chrXII:282492-282868 - 24 1.06e-03 AAAAAAAATG TACGGAGGGAAAAGATGTACAGGTGTAAA AAAGCACCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCNNRDTKGKTARGGCGYMHGRYTNDWAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:689365-689821 1e-11 30_[+2]_41 chrXIV:560498-560960 1.6e-11 48_[-2]_23 chrVIII:115922-116379 1.6e-11 41_[-2]_30 chrXV:113615-114000 1.6e-11 53_[+2]_18 chrXIV:104605-105106 1.6e-11 8_[+2]_63 chrIV:434001-434554 1.6e-11 71_[-2] chrX:58947-59047 1.6e-11 29_[-2]_42 chrXV:487250-487673 3.5e-11 37_[+2]_34 chrVI:137289-137737 3.5e-11 57_[-2]_14 chrXV:228130-228559 3.5e-11 46_[+2]_25 chrIII:127529-127919 3.5e-11 51_[+2]_20 chrVII:730936-731405 3.5e-11 26_[+2]_45 chrXIV:632411-632828 3.5e-11 39_[+2]_32 chrXIV:102521-102929 3.5e-11 50_[+2]_21 chrXV:438443-438924 7.7e-11 18_[+2]_53 chrXII:875193-875634 7.7e-11 21_[+2]_50 chrVII:115296-115772 7.7e-11 12_[+2]_59 chrIV:359382-359848 7.7e-11 20_[+2]_51 chrXI:578779-579264 7.7e-11 2_[+2]_69 chrXVI:769014-769502 7.7e-11 56_[-2]_15 chrVII:876198-876678 1.6e-10 14_[+2]_57 chrVII:185547-185975 1.6e-10 37_[-2]_34 chrIV:1201549-1202022 1.6e-10 23_[+2]_48 chrIV:1352298-1352735 1.6e-10 34_[-2]_37 chrX:414776-414876 1.6e-10 28_[+2]_43 chrV:135213-135695 1.6e-10 55_[-2]_16 chrVI:226513-226934 1.6e-10 49_[-2]_22 chrIV:437583-437991 2.3e-10 43_[+2]_28 chrXIII:259010-259441 2.3e-10 26_[-2]_45 chrII:226868-227378 2.3e-10 10_[+2]_61 chrIV:980798-981253 2.3e-10 42_[-2]_29 chrIV:1305441-1305855 2.3e-10 40_[+2]_31 chrVII:561430-561960 2.3e-10 60_[-2]_11 chrIII:227748-228197 7.6e-10 28_[+2]_43 chrVIII:358324-358761 1.1e-09 39_[-2]_32 chrII:36217-36620 1.1e-09 38_[+2]_33 chrVI:157762-158208 1.1e-09 34_[-2]_37 chrVIII:237677-238132 1.1e-09 47_[-2]_24 chrVII:440484-441082 1.1e-09 36_[-2]_35 chrV:492188-492625 3.1e-09 30_[-2]_41 chrXI:490770-491199 3.1e-09 42_[+2]_29 chrIV:619775-620239 3.1e-09 46_[-2]_25 chrXII:214726-215151 4.2e-09 29_[-2]_42 chrI:166052-166518 4.2e-09 40_[+2]_31 chrXIV:569719-570109 7.4e-09 37_[-2]_34 chrV:551107-551532 7.4e-09 50_[-2]_21 chrXII:734605-735027 7.4e-09 45_[+2]_26 chrVII:738934-739365 7.4e-09 32_[+2]_39 chrXII:1051951-1052330 7.4e-09 15_[-2]_56 chrIX:183283-183707 7.4e-09 29_[-2]_42 chrXIV:602128-602520 7.4e-09 47_[+2]_24 chrXVI:819302-819803 7.4e-09 36_[+2]_35 chrIX:210451-210930 7.4e-09 34_[+2]_37 chrXVI:880067-880567 7.4e-09 63_[-2]_8 chrXI:46606-46995 1.1e-08 19_[-2]_52 chrXII:592379-592816 7.8e-08 33_[-2]_38 chrX:617723-617823 7.8e-08 42_[+2]_29 chrII:9392-9837 8.8e-08 28_[+2]_43 chrX:424324-424424 8.8e-08 2_[-2]_69 chrXIV:725997-726421 8.8e-08 19_[-2]_52 chrIV:519546-519947 8.8e-08 56_[+2]_15 chrII:405656-406172 9.9e-08 21_[+2]_50 chrX:374264-374364 9.9e-08 71_[-2] chrVII:736109-736634 9.9e-08 26_[+2]_45 chrVII:405258-405736 9.9e-08 30_[+2]_41 chrVII:828498-828991 9.9e-08 63_[-2]_8 chrV:99931-100387 1.1e-07 31_[+2]_40 chrX:517683-517783 1.1e-07 30_[-2]_41 chrXI:517788-518201 1.6e-07 52_[+2]_19 chrIV:410196-410604 1.6e-07 37_[+2]_34 chrX:538363-538463 1.6e-07 49_[+2]_22 chrXVI:856681-857120 1.6e-07 60_[+2]_11 chrVII:706936-707385 2.2e-07 32_[-2]_39 chrXVI:775616-776025 2.2e-07 29_[-2]_42 chrII:642858-643266 2.2e-07 29_[-2]_42 chrXII:628185-628671 5.3e-07 14_[+2]_57 chrIV:1461541-1462043 5.3e-07 48_[-2]_23 chrXIII:168591-169105 5.9e-07 7_[+2]_64 chrXIII:837721-838126 5.9e-07 65_[+2]_6 chrX:354052-354152 5.9e-07 36_[+2]_35 chrX:542794-542894 5.9e-07 40_[-2]_31 chrVI:210448-210895 5.9e-07 46_[-2]_25 chrIV:946093-946588 5.9e-07 32_[+2]_39 chrX:422743-422843 6.5e-07 3_[+2]_68 chrX:390888-390988 6.5e-07 23_[-2]_48 chrXV:976209-976715 6.5e-07 17_[+2]_54 chrIV:884166-884642 8.8e-07 15_[+2]_56 chrVII:205333-205767 1.5e-06 30_[+2]_41 chrIV:341265-341628 1.6e-06 33_[+2]_38 chrXIII:808087-808520 2.3e-06 26_[-2]_45 chrVIII:134142-134525 3.1e-06 46_[+2]_25 chrV:250093-250532 3.1e-06 32_[+2]_39 chrIV:520782-521195 3.1e-06 42_[+2]_29 chrIV:802566-803004 3.1e-06 29_[-2]_42 chrV:130926-131350 3.1e-06 27_[-2]_44 chrVIII:466784-467196 4.1e-06 57_[+2]_14 chrVII:661552-661963 4.1e-06 49_[+2]_22 chrX:415817-415917 4.4e-06 26_[-2]_45 chrVII:878567-878996 4.4e-06 47_[-2]_24 chrVII:287195-287649 4.4e-06 46_[-2]_25 chrXV:594202-594616 6.9e-06 28_[-2]_43 chrVII:823284-823717 6.9e-06 41_[+2]_30 chrXI:308011-308408 6.9e-06 19_[-2]_52 chrXII:687635-688118 6.9e-06 67_[-2]_4 chrV:469262-469665 6.9e-06 53_[+2]_18 chrXIII:372307-372710 6.9e-06 21_[-2]_50 chrVIII:105483-105599 1e-05 69_[-2]_2 chrV:434366-434812 1.3e-05 35_[-2]_36 chrVII:319582-320040 1.3e-05 28_[+2]_43 chrXIII:362867-363307 1.3e-05 35_[+2]_36 chrVII:110444-110891 1.3e-05 41_[-2]_30 chrXI:313251-313654 1.3e-05 32_[-2]_39 chrVII:483-754 1.3e-05 65_[-2]_6 chrXIII:145892-146310 1.7e-05 29_[-2]_42 chrXI:108732-109103 2.3e-05 32_[-2]_39 chrXIV:495165-495598 3.6e-05 50_[+2]_21 chrX:541300-541400 4.5e-05 41_[+2]_30 chrVII:544340-544848 4.5e-05 66_[-2]_5 chrIX:324150-324560 4.5e-05 31_[-2]_40 chrXII:426957-427351 4.5e-05 36_[+2]_35 chrVIII:475515-475958 5.6e-05 54_[-2]_17 chrIII:123413-123828 6.9e-05 48_[-2]_23 chrXIV:631694-632107 6.9e-05 37_[-2]_34 chrIV:579474-580186 6.9e-05 34_[-2]_37 chrVI:221716-222098 9.7e-05 49_[+2]_22 chrX:157448-157548 0.00011 22_[+2]_49 chrXI:382173-382464 0.00012 33_[-2]_38 chrXVI:302679-303008 0.00015 32_[-2]_39 chrXIV:444453-444777 0.00016 42_[+2]_29 chrVII:149096-149519 0.0002 47_[+2]_24 chrIV:579063-579407 0.00022 17_[-2]_54 chrXIII:420315-420852 0.00026 7_[-2]_64 chrX:90069-90169 0.00028 28_[-2]_43 chrXIV:331670-331805 0.00039 16_[+2]_55 chrXII:922100-922545 0.00044 69_[-2]_2 chrII:604116-604523 0.00046 12_[-2]_59 chrIX:174844-175338 0.00055 66_[-2]_5 chrXII:282492-282868 0.0011 23_[-2]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCNNRDTKGKTARGGCGYMHGRYTNDWAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCNNRDTKGKTARGGCGYMHGRYTNDWAA width=29 seqs=138 chrXVI:689365-689821 ( 31) GCCGAGTGGTTAAGGCGACAGACTTGAAA 1 chrXIV:560498-560960 ( 49) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrVIII:115922-116379 ( 42) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrXV:113615-114000 ( 54) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrXIV:104605-105106 ( 9) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrIV:434001-434554 ( 72) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrX:58947-59047 ( 30) GCCAAGTTGGTAAGGCGCCACACTAGTAA 1 chrXV:487250-487673 ( 38) CCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrVI:137289-137737 ( 58) CCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrXV:228130-228559 ( 47) CCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrIII:127529-127919 ( 52) CCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrVII:730936-731405 ( 27) CCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrXIV:632411-632828 ( 40) CCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrXIV:102521-102929 ( 51) CCAAGTTGGTTAAGGCGTGCGACTGTTAA 1 chrXV:438443-438924 ( 19) GCTCAGTTGGTAGAGCGTTCGGCTTTTAA 1 chrXII:875193-875634 ( 22) GCTCAGTTGGTAGAGCGTTCGGCTTTTAA 1 chrVII:115296-115772 ( 13) GCTCAGTTGGTAGAGCGTTCGGCTTTTAA 1 chrIV:359382-359848 ( 21) GCTCAGTTGGTAGAGCGTTCGGCTTTTAA 1 chrXI:578779-579264 ( 3) GCTCAGTTGGTAGAGCGTTCGGCTTTTAA 1 chrXVI:769014-769502 ( 57) GCTCAGTTGGTAGAGCGTTCGGCTTTTAA 1 chrVII:876198-876678 ( 15) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrVII:185547-185975 ( 38) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrIV:1201549-1202022 ( 24) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrIV:1352298-1352735 ( 35) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrX:414776-414876 ( 29) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrV:135213-135695 ( 56) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrVI:226513-226934 ( 50) GCGCAATCGGTAGCGCGTATGACTCTTAA 1 chrIV:437583-437991 ( 44) GCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrXIII:259010-259441 ( 27) GCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrII:226868-227378 ( 11) GCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrIV:980798-981253 ( 43) GCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrIV:1305441-1305855 ( 41) GCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrVII:561430-561960 ( 61) GCCGAGTGGTTAAGGCGAAAGATTAGAAA 1 chrIII:227748-228197 ( 29) GCCGAGTGGTTAAGGCGAGAGACTCGAAT 1 chrVIII:358324-358761 ( 40) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrII:36217-36620 ( 39) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrVI:157762-158208 ( 35) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrVIII:237677-238132 ( 48) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrVII:440484-441082 ( 37) GCTCAGTTGGGAGAGCGCCAGACTGAAGA 1 chrV:492188-492625 ( 31) GCCCAATGGTCACGGCGTCTGGCTACGAA 1 chrXI:490770-491199 ( 43) GCCCAATGGTCACGGCGTCTGGCTACGAA 1 chrIV:619775-620239 ( 47) GCCCAATGGTCACGGCGTCTGGCTACGAA 1 chrXII:214726-215151 ( 30) GCGCAGTTGGTAGCGCGCTTCCCTTGCAA 1 chrI:166052-166518 ( 41) GCGCAGTTGGTAGCGCGCTTCCCTTGCAA 1 chrXIV:569719-570109 ( 38) CCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrV:551107-551532 ( 51) CCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrXII:734605-735027 ( 46) CCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrVII:738934-739365 ( 33) CCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrXII:1051951-1052330 ( 16) CCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrIX:183283-183707 ( 30) CCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrXIV:602128-602520 ( 48) CCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrXVI:819302-819803 ( 37) CCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrIX:210451-210930 ( 35) CCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrXVI:880067-880567 ( 64) CCCAGTTGGTTAAGGCACCGTGCTAATAA 1 chrXI:46606-46995 ( 20) GGCCAAGTGGTAAGGCATCGCACTCGTAA 1 chrXII:592379-592816 ( 34) CCGAGTGGTTTAAGGCGTCAGATTTAGGT 1 chrX:617723-617823 ( 43) CCGAGTGGTTTAAGGCGTCAGATTTAGGT 1 chrII:9392-9837 ( 29) CCGAGTGGTCTAAGGCGGCAGACTTAAGA 1 chrX:424324-424424 ( 3) CCGAGTGGTCTAAGGCGGCAGACTTAAGA 1 chrXIV:725997-726421 ( 20) CCGAGTGGTCTAAGGCGGCAGACTTAAGA 1 chrIV:519546-519947 ( 57) CCGAGTGGTCTAAGGCGGCAGACTTAAGA 1 chrII:405656-406172 ( 22) GGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrX:374264-374364 ( 72) GGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrVII:736109-736634 ( 27) GGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrVII:405258-405736 ( 31) GGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrVII:828498-828991 ( 64) GGCGTAATGGCAACGCGTCTGACTTCTAA 1 chrV:99931-100387 ( 32) GGCGCAGTGGAAGCGCGCAGGGCTCATAA 1 chrX:517683-517783 ( 31) GGCGCAGTGGAAGCGCGCAGGGCTCATAA 1 chrXI:517788-518201 ( 53) GCGTAGTCGGTAGCGCGCTCCCTTAGCAT 1 chrIV:410196-410604 ( 38) GCGTAGTCGGTAGCGCGCTCCCTTAGCAT 1 chrX:538363-538463 ( 50) GGCGTAATGGTAACGCGTCTCCCTCCTAA 1 chrXVI:856681-857120 ( 61) GCGTAGTCGGTAGCGCGCTCCCTTAGCAT 1 chrVII:706936-707385 ( 33) GGCGCAGTGGTAGCGCAGCAGATTGCAAA 1 chrXVI:775616-776025 ( 30) GGCGCAGTGGTAGCGCAGCAGATTGCAAA 1 chrII:642858-643266 ( 30) GGCGCAGTGGTAGCGCAGCAGATTGCAAA 1 chrXII:628185-628671 ( 15) CCGAGCGGTCTAAGGCGCCTGATTCAAGA 1 chrIV:1461541-1462043 ( 49) CCGAGCGGTCTAAGGCGCCTGATTCAAGA 1 chrXIII:168591-169105 ( 8) CAAGTTGGTTTAAGGCGCAAGACTGTAAT 1 chrXIII:837721-838126 ( 66) CAAGTTGGTTTAAGGCGCAAGACTGTAAT 1 chrX:354052-354152 ( 37) CAAGTTGGTTTAAGGCGCAAGACTGTAAT 1 chrX:542794-542894 ( 41) CAAGTTGGTTTAAGGCGCAAGACTGTAAT 1 chrVI:210448-210895 ( 47) CAAGTTGGTTTAAGGCGCAAGACTGTAAT 1 chrIV:946093-946588 ( 33) CAAGTTGGTTTAAGGCGCAAGACTGTAAT 1 chrX:422743-422843 ( 4) GCTCAGTAGGAAGAGCGTCAGTCTCATAA 1 chrX:390888-390988 ( 24) GCTCAGTAGGAAGAGCGTCAGTCTCATAA 1 chrXV:976209-976715 ( 18) GCTCAGTAGGAAGAGCGTCAGTCTCATAA 1 chrIV:884166-884642 ( 16) GCTCAGTGGTTAGAGCTTCGTGCTTATAG 1 chrVII:205333-205767 ( 31) CCGAGCGGTCTAAGGCGCCTGATTCAAGC 1 chrIV:341265-341628 ( 34) GACTGGGTGTTAAAATGTACGGATGGAAA 1 chrXIII:808087-808520 ( 27) GTGTAGTGGTTATCACTTTCGGTTCTGAT 1 chrVIII:134142-134525 ( 47) GTGTAGTGGTTATCACTTTCGGTTTTGAT 1 chrV:250093-250532 ( 33) GTGTAGTGGTTATCACTTTCGGTTTTGAT 1 chrIV:520782-521195 ( 43) GTGTAGTGGTTATCACTTTCGGTTTTGAT 1 chrIV:802566-803004 ( 30) GTGTAGTGGTTATCACTTTCGGTTTTGAT 1 chrV:130926-131350 ( 28) GTGTAGTGGTTATCACTTTCGGTTTTGAT 1 chrVIII:466784-467196 ( 58) AGCTTAGTGGTAGAGCGTTGCACTTGTAA 1 chrVII:661552-661963 ( 50) AGCTTAGTGGTAGAGCGTTGCACTTGTAA 1 chrX:415817-415917 ( 27) GGCTCAATGGTAGAGCTTTCGACTCCAAT 1 chrVII:878567-878996 ( 48) GGCTCAATGGTAGAGCTTTCGACTCCAAT 1 chrVII:287195-287649 ( 47) GGCTCAATGGTAGAGCTTTCGACTCCAAT 1 chrXV:594202-594616 ( 29) GTTCAGTGGTTAGAATTTATGCTTCCCAA 1 chrVII:823284-823717 ( 42) TCTAGTCGGTTATGGCATCTGCTTAACAC 1 chrXI:308011-308408 ( 20) TCTAGTCGGTTATGGCATCTGCTTAACAC 1 chrXII:687635-688118 ( 68) TCTAGTCGGTTATGGCATCTGCTTAACAC 1 chrV:469262-469665 ( 54) TCTAGTCGGTTATGGCATCTGCTTAACAC 1 chrXIII:372307-372710 ( 22) TCTAGTCGGTTATGGCATCTGCTTAACAC 1 chrVIII:105483-105599 ( 70) GAAAATTGGTTAAGACATTATCTTAAAAA 1 chrV:434366-434812 ( 36) GTATAGTGGTTAGTACACATCGTTGTGGC 1 chrVII:319582-320040 ( 29) GTATAGTGGTTAGTACACATCGTTGTGGC 1 chrXIII:362867-363307 ( 36) GTATAGTGGTTAGTACACATCGTTGTGGC 1 chrVII:110444-110891 ( 42) GTATAGTGGTTAGTACACATCGTTGTGGC 1 chrXI:313251-313654 ( 33) GTATAGTGGTTAGTACACATCGTTGTGGC 1 chrVII:483-754 ( 66) GTAAAAGTGGTATAACGTATGCATTAAGA 1 chrXIII:145892-146310 ( 30) GTGTATGGTGTATGGTGTATGGATGTACA 1 chrXI:108732-109103 ( 33) ACGGATGTTGTAATGTGTTTGGATGATAA 1 chrXIV:495165-495598 ( 51) TTTGGGTGTGTATAGTGTACGGATTGAAT 1 chrX:541300-541400 ( 42) GTTTAATGGTCAGAATGGGCGCTTGTCGC 1 chrVII:544340-544848 ( 67) GTTTAATGGTCAGAATGGGCGCTTGTCGC 1 chrIX:324150-324560 ( 32) GTTTAATGGTCAGAATGGGCGCTTGTCGC 1 chrXII:426957-427351 ( 37) GTTTAATGGTCAGAATGGGCGCTTGTCGC 1 chrVIII:475515-475958 ( 55) GTGTAGCGGCTATCACGTTGCCTTCACAC 1 chrIII:123413-123828 ( 49) GGCGTGTGGTCTAGAGGTATGATTCTCGC 1 chrXIV:631694-632107 ( 38) GGCGTGTGGTCTAGAGGTATGATTCTCGC 1 chrIV:579474-580186 ( 35) TCCGATAGGTTAACGTGTTATGTTATGAG 1 chrVI:221716-222098 ( 50) ATTGGGTGTTAAAAATGTACGGGTGAAAA 1 chrX:157448-157548 ( 23) TATGGATGTATAAAGTGTACGGGTGTAAA 1 chrXI:382173-382464 ( 34) TTGTGTTGGGTGTGATGTCCGGATGCAAC 1 chrXVI:302679-303008 ( 33) ATGGGTGTTTTAGGATGTCTGGATGTACA 1 chrXIV:444453-444777 ( 43) GTACGGATTTAAAGAGGTACGGATGGAGA 1 chrVII:149096-149519 ( 48) GTATGTATGGGTGGGTGTATGGATGCTGT 1 chrIV:579063-579407 ( 18) GGGTCTACTTTATGGTTTATGGGTGGTAA 1 chrXIII:420315-420852 ( 8) CGGAAAGTTTTTTAACGCCCGTCTGGCGT 1 chrX:90069-90169 ( 29) ATGTATGGGTGAGAATGTCCAGGTGCAAA 1 chrXIV:331670-331805 ( 17) GTAGAGGGGATAAGTTGGATAACTGTTAT 1 chrXII:922100-922545 ( 70) ACGAGAATTGGAATATGTACGGGTGTCAA 1 chrII:604116-604523 ( 13) GTACAGATGTGTAAATGTACGGATTAAAT 1 chrIX:174844-175338 ( 67) TTACAAGGTGTATGACGTGCCGAAGAAAA 1 chrXII:282492-282868 ( 24) TACGGAGGGAAAAGATGTACAGGTGTAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCNNRDTKGKTARGGCGYMHGRYTNDWAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 39744 bayes= 6.38726 E= 5.5e-259 -260 32 172 -195 -209 156 -33 -55 -77 89 44 -60 -5 27 40 -50 76 -156 63 -141 -20 -314 106 2 -150 -214 32 98 -382 -127 158 8 -1375 -1375 208 -71 -382 -173 111 72 -241 -92 -156 133 163 -1375 -472 -309 63 -314 92 -116 -37 23 134 -260 -41 -1375 199 -541 -1375 211 -314 -102 -77 -1375 193 -183 -241 70 -114 82 -2 111 -103 -71 -13 63 -64 -5 -382 -27 192 -171 61 -48 92 -341 -195 156 -214 2 -541 -1375 -1375 169 -28 -3 80 -46 -2 -48 3 23 11 -40 -64 37 133 -372 13 -1375 110 -48 -372 -71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCNNRDTKGKTARGGCGYMHGRYTNDWAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 138 E= 5.5e-259 0.050725 0.239130 0.630435 0.079710 0.072464 0.565217 0.152174 0.210145 0.181159 0.355072 0.260870 0.202899 0.297101 0.231884 0.253623 0.217391 0.521739 0.065217 0.297101 0.115942 0.268116 0.021739 0.398551 0.311594 0.108696 0.043478 0.239130 0.608696 0.021739 0.079710 0.572464 0.326087 0.000000 0.000000 0.811594 0.188406 0.021739 0.057971 0.413043 0.507246 0.057971 0.101449 0.065217 0.775362 0.956522 0.000000 0.007246 0.036232 0.478261 0.021739 0.362319 0.137681 0.239130 0.224638 0.485507 0.050725 0.231884 0.000000 0.760870 0.007246 0.000000 0.826087 0.021739 0.152174 0.181159 0.000000 0.731884 0.086957 0.057971 0.311594 0.086957 0.543478 0.304348 0.413043 0.094203 0.188406 0.282609 0.297101 0.123188 0.297101 0.021739 0.159420 0.724638 0.094203 0.471014 0.137681 0.362319 0.028986 0.079710 0.565217 0.043478 0.311594 0.007246 0.000000 0.000000 0.992754 0.253623 0.188406 0.333333 0.224638 0.304348 0.137681 0.195652 0.362319 0.333333 0.144928 0.123188 0.398551 0.775362 0.014493 0.210145 0.000000 0.659420 0.137681 0.014493 0.188406 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCNNRDTKGKTARGGCGYMHGRYTNDWAA MEME-2 regular expression -------------------------------------------------------------------------------- [GC][CT][CGT][AGCT][AG][GTA][TG][GT]G[TG]TA[AG][GAC][GA]CG[TC][CA][CTA]G[AG][CT]T[GAT][TA][TA][AG]A -------------------------------------------------------------------------------- Time 566.19 secs. ******************************************************************************** ******************************************************************************** MOTIF GSGCRWGTGGTYTAGTGGTAWRATYCWMSS MEME-3 width = 30 sites = 15 llr = 527 E-value = 4.2e-107 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSGCRWGTGGTYTAGTGGTAWRATYCWMSS MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::66:::::::a:::::a66a:::66:: pos.-specific C :6:a:::::::4::::::::::::6a:464 probability G a4a:4:a:aa::::a:aa:::4::::::46 matrix T :::::4:a::a6a::a::a:4::a4:4::: bits 2.4 * ** * ** * ** * 2.1 * ** * ** * ** * 1.9 * ** * ** * ** * 1.7 * ** ***** ******** ** * Relative 1.4 **** ***** ******** ** * ** Entropy 1.2 **** ***** ******** **** ** (50.7 bits) 1.0 ***** ************** ***** *** 0.7 ****************************** 0.5 ****************************** 0.2 ****************************** 0.0 ------------------------------ Multilevel GCGCAAGTGGTTTAGTGGTAAAATCCAACG consensus G GT C TG T TCGC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCRWGTGGTYTAGTGGTAWRATYCWMSS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrXVI:572075-572544 + 10 4.76e-18 CAATACTTC GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrIV:83372-83766 + 29 4.76e-18 AGTTCACTTA GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrXIII:183754-184149 - 38 4.76e-18 AATAAAGATC GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrVI:162036-162429 + 46 4.76e-18 AAGAAAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrXV:281972-282380 + 38 4.76e-18 ACATGAAAGC GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrXVI:860179-860616 + 32 4.76e-18 TAAATAACAA GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrVII:930806-931227 - 28 4.76e-18 TAATCAGTAA GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrIII:142590-142967 - 14 4.76e-18 AAGATTACTA GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrIV:992607-993056 + 51 4.76e-18 ACAATTGTGA GCGCAAGTGGTTTAGTGGTAAAATCCAACG TTGCCATCGT chrVIII:388729-389190 - 57 6.96e-16 ACAGATACAT GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrVI:101188-101616 + 24 6.96e-16 ACAATAATTC GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrXIII:195908-196394 - 40 6.96e-16 AAGTTCACAA GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrXII:92353-92815 + 14 6.96e-16 AAGTTAATAA GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrXV:464243-464684 + 37 6.96e-16 AAGTTAACAA GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC chrI:138957-139384 + 32 6.96e-16 CAATTAGTAC GGGCGTGTGGTCTAGTGGTATGATTCTCGC TTTGGGCGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCRWGTGGTYTAGTGGTAWRATYCWMSS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXVI:572075-572544 4.8e-18 9_[+3]_61 chrIV:83372-83766 4.8e-18 28_[+3]_42 chrXIII:183754-184149 4.8e-18 37_[-3]_33 chrVI:162036-162429 4.8e-18 45_[+3]_25 chrXV:281972-282380 4.8e-18 37_[+3]_33 chrXVI:860179-860616 4.8e-18 31_[+3]_39 chrVII:930806-931227 4.8e-18 27_[-3]_43 chrIII:142590-142967 4.8e-18 13_[-3]_57 chrIV:992607-993056 4.8e-18 50_[+3]_20 chrVIII:388729-389190 7e-16 56_[-3]_14 chrVI:101188-101616 7e-16 23_[+3]_47 chrXIII:195908-196394 7e-16 39_[-3]_31 chrXII:92353-92815 7e-16 13_[+3]_57 chrXV:464243-464684 7e-16 36_[+3]_34 chrI:138957-139384 7e-16 31_[+3]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCRWGTGGTYTAGTGGTAWRATYCWMSS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSGCRWGTGGTYTAGTGGTAWRATYCWMSS width=30 seqs=15 chrXVI:572075-572544 ( 10) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrIV:83372-83766 ( 29) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrXIII:183754-184149 ( 38) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrVI:162036-162429 ( 46) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrXV:281972-282380 ( 38) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrXVI:860179-860616 ( 32) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrVII:930806-931227 ( 28) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrIII:142590-142967 ( 14) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrIV:992607-993056 ( 51) GCGCAAGTGGTTTAGTGGTAAAATCCAACG 1 chrVIII:388729-389190 ( 57) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 chrVI:101188-101616 ( 24) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 chrXIII:195908-196394 ( 40) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 chrXII:92353-92815 ( 14) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 chrXV:464243-464684 ( 37) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 chrI:138957-139384 ( 32) GGGCGTGTGGTCTAGTGGTATGATTCTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCRWGTGGTYTAGTGGTAWRATYCWMSS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 39192 bayes= 11.2758 E= 4.2e-107 -1055 -1055 238 -1055 -1055 164 106 -1055 -1055 -1055 238 -1055 -1055 238 -1055 -1055 96 -1055 106 -1055 96 -1055 -1055 38 -1055 -1055 238 -1055 -1055 -1055 -1055 170 -1055 -1055 238 -1055 -1055 -1055 238 -1055 -1055 -1055 -1055 170 -1055 106 -1055 96 -1055 -1055 -1055 170 170 -1055 -1055 -1055 -1055 -1055 238 -1055 -1055 -1055 -1055 170 -1055 -1055 238 -1055 -1055 -1055 238 -1055 -1055 -1055 -1055 170 170 -1055 -1055 -1055 96 -1055 -1055 38 96 -1055 106 -1055 170 -1055 -1055 -1055 -1055 -1055 -1055 170 -1055 164 -1055 38 -1055 238 -1055 -1055 96 -1055 -1055 38 96 106 -1055 -1055 -1055 164 106 -1055 -1055 106 164 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCRWGTGGTYTAGTGGTAWRATYCWMSS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 15 E= 4.2e-107 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.000000 0.400000 0.600000 0.000000 0.400000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.600000 0.000000 0.400000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.000000 0.400000 0.600000 0.400000 0.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.400000 0.600000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCRWGTGGTYTAGTGGTAWRATYCWMSS MEME-3 regular expression -------------------------------------------------------------------------------- G[CG]GC[AG][AT]GTGGT[TC]TAGTGGTA[AT][AG]AT[CT]C[AT][AC][CG][GC] -------------------------------------------------------------------------------- Time 817.85 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:31-350 1.48e-01 100 chrVIII:411088-411670 8.40e-01 100 chrX:223919-224019 4.01e-01 100 chrX:115763-115863 7.21e-08 14_[-1(4.36e-10)]_4_[-2(3.64e-05)]_\ 32 chrV:354736-355324 1.63e-01 100 chrVIII:556586-557259 4.10e-01 100 chrVII:561430-561960 3.56e-10 60_[-2(2.31e-10)]_11 chrXII:498808-499667 6.07e-01 100 chrIX:388679-388884 8.03e-01 100 chrIV:619775-620239 3.08e-09 20_[-1(2.59e-07)]_5_[-2(3.10e-09)]_\ 25 chrXI:108732-109103 1.20e-02 32_[-2(2.32e-05)]_39 chrXII:837590-839482 4.10e-01 100 chrVII:287195-287649 2.96e-03 46_[-2(4.44e-06)]_25 chrVI:95459-95872 2.73e-01 100 chrV:61119-62146 5.20e-01 100 chrVIII:296862-297235 6.00e-01 100 chrXIII:552871-553163 8.02e-01 100 chrXVI:880067-880567 8.65e-13 37_[-1(3.22e-11)]_5_[-2(7.42e-09)]_\ 8 chrIX:210451-210930 8.41e-14 34_[+2(7.42e-09)]_5_[+1(3.22e-11)]_\ 11 chrII:236915-237168 7.12e-01 100 chrVII:440484-441082 2.67e-06 36_[-2(1.05e-09)]_35 chrXII:673775-674253 4.20e-01 100 chrXVI:280695-281902 2.13e-01 100 chrI:69787-70251 5.94e-01 100 chrXII:932051-932504 2.08e-01 100 chrXII:232079-234292 5.41e-02 58_[+1(9.78e-05)]_21 chrXIV:776822-777066 9.93e-02 100 chrXII:370403-371000 1.95e-01 100 chrXV:444722-446189 5.60e-01 100 chrXVI:377174-377430 5.22e-01 100 chrIV:1075316-1075726 3.49e-08 9_[-1(3.26e-10)]_5_[-2(5.61e-05)]_\ 36 chrV:322002-322905 9.34e-02 100 chrIV:411253-411654 2.27e-01 100 chrIV:992607-993056 2.94e-14 50_[+3(4.76e-18)]_20 chrXII:814478-814942 1.96e-01 100 chrX:58947-59047 3.42e-13 3_[-1(1.08e-08)]_5_[-2(1.56e-11)]_\ 42 chrII:555900-556039 8.71e-01 100 chrIV:1305441-1305855 8.50e-09 40_[+2(2.31e-10)]_31 chrIV:129940-130494 8.89e-01 100 chrV:18739-19108 2.95e-01 100 chrXV:161135-161403 9.56e-01 100 chrVII:700455-701242 9.58e-01 100 chrV:491048-491411 1.98e-01 100 chrXII:645860-646071 2.83e-03 21_[-2(9.06e-05)]_50 chrXI:159185-159479 5.36e-01 100 chrVII:998141-998605 3.61e-01 100 chrI:142158-143573 1.47e-01 100 chrXIV:102521-102929 1.08e-07 50_[+2(3.54e-11)]_21 chrIV:579474-580186 2.90e-02 34_[-2(6.91e-05)]_37 chrXVI:282287-282631 8.80e-01 100 chrXVI:819302-819803 8.41e-14 36_[+2(7.42e-09)]_5_[+1(3.22e-11)]_\ 9 chrXIII:163691-163973 6.94e-01 100 chrIII:11019-11483 9.62e-01 100 chrXI:46606-46995 1.02e-05 19_[-2(1.13e-08)]_52 chrXII:201765-202376 6.09e-02 100 chrIV:946093-946588 9.24e-04 32_[+2(5.86e-07)]_39 chrXIII:759499-759963 5.14e-01 100 chrIII:142590-142967 2.52e-14 13_[-3(4.76e-18)]_57 chrX:227746-227846 3.90e-01 100 chrII:169229-169625 9.97e-01 100 chrV:362935-363195 7.12e-01 100 chrXIII:23754-25767 7.14e-01 100 chrXIV:632411-632828 6.30e-12 39_[+2(3.54e-11)]_5_[+1(1.25e-07)]_\ 6 chrVII:878567-878996 2.96e-03 47_[-2(4.44e-06)]_24 chrIV:519546-519947 8.07e-06 56_[+2(8.76e-08)]_15 chrXI:326181-327415 1.96e-01 100 chrVII:479207-482995 6.42e-01 100 chrXII:639284-640230 4.02e-01 100 chrV:117696-118298 3.16e-01 100 chrXV:779682-780996 2.57e-01 100 chrXV:232100-232330 9.93e-01 100 chrV:53527-53926 5.69e-01 100 chrVI:226513-226934 5.31e-14 23_[-1(9.23e-11)]_5_[-2(1.62e-10)]_\ 22 chrVI:210448-210895 1.46e-07 6_[-1(6.64e-08)]_19_[-2(5.86e-07)]_\ 25 chrVII:930806-931227 3.67e-14 27_[-3(4.76e-18)]_43 chrXV:908779-909243 6.75e-01 100 chrVI:221716-222098 4.96e-03 49_[+2(9.68e-05)]_22 chrXI:162247-162749 1.85e-06 47_[-1(1.84e-09)]_32 chrVII:648191-648504 9.78e-01 100 chrII:332301-332752 3.45e-02 100 chrX:73375-73475 2.85e-01 100 chrII:374329-374511 4.56e-01 100 chrIII:82333-82714 8.87e-02 22_[-2(3.64e-05)]_49 chrX:703250-703350 2.47e-01 100 chrVIII:34408-36008 9.46e-01 100 chrV:141050-141405 9.55e-01 100 chrV:130926-131350 5.85e-09 2_[-1(2.63e-09)]_4_[-2(3.09e-06)]_\ 44 chrXIII:511166-511630 5.29e-01 100 chrXII:426957-427351 3.39e-07 36_[+2(4.53e-05)]_4_[+1(6.64e-08)]_\ 10 chrXV:1005693-1006157 2.16e-01 100 chrV:6137-6560 4.39e-01 100 chrXV:92894-93436 4.44e-01 100 chrXIII:540336-540708 2.11e-01 100 chrXIV:602128-602520 3.46e-06 47_[+2(7.42e-09)]_24 chrXI:334423-334723 3.08e-01 100 chrXII:856023-856557 5.38e-01 100 chrXVI:192456-192581 9.37e-01 100 chrI:71814-73626 2.78e-01 100 chrXV:94458-94856 4.69e-01 100 chrXII:489212-489600 1.18e-01 100 chrIV:217423-217887 7.79e-01 100 chrV:78212-78633 3.68e-01 100 chrIV:355497-355826 6.39e-01 100 chrXII:712377-712643 6.88e-01 100 chrX:542794-542894 1.96e-07 [-1(6.64e-08)]_19_[-2(5.86e-07)]_31 chrXII:366069-366481 1.04e-01 100 chrI:138957-139384 1.11e-12 31_[+3(6.96e-16)]_39 chrIX:174844-175338 3.13e-06 32_[+1(1.08e-08)]_47 chrVII:783788-784252 8.99e-01 100 chrIV:340394-340657 9.52e-01 100 chrVII:730936-731405 6.30e-12 26_[+2(3.54e-11)]_5_[+1(1.25e-07)]_\ 19 chrXV:621421-622080 8.42e-01 100 chrXII:897708-898045 8.95e-01 100 chrXIII:887401-887836 1.67e-01 100 chrXII:424117-424471 7.73e-01 100 chrIII:227748-228197 3.41e-08 28_[+2(7.60e-10)]_43 chrIV:1095135-1095646 4.18e-04 38_[-1(1.16e-07)]_41 chrIX:183283-183707 8.41e-14 3_[-1(3.22e-11)]_5_[-2(7.42e-09)]_\ 42 chrXIV:415295-415543 5.80e-01 100 chrXV:901445-901605 5.68e-01 100 chrXI:520534-520931 2.52e-01 100 chrVII:371215-371489 5.58e-01 100 chrXI:666410-666733 1.56e-01 100 chrX:391825-391925 1.10e-01 100 chrXIII:408524-408685 1.75e-03 73_[-1(1.63e-06)]_6 chrXV:80591-80870 8.47e-01 100 chrXIV:64197-64661 6.29e-01 100 chrVIII:375453-375658 6.17e-01 100 chrXI:432604-432874 2.08e-01 100 chrXIII:267874-268305 9.72e-01 100 chrXV:464243-464684 1.11e-12 36_[+3(6.96e-16)]_34 chrXV:159256-160331 5.10e-02 100 chrX:652148-652248 7.58e-01 100 chrV:176899-177393 8.91e-08 11_[+2(3.64e-05)]_4_[+1(4.36e-10)]_\ 35 chrVII:439359-439891 2.49e-03 29_[-2(4.53e-05)]_42 chrIX:316115-316617 2.76e-01 100 chrVI:223909-224231 5.61e-01 100 chrXV:384830-384946 4.34e-02 17_[+2(5.61e-05)]_54 chrXVI:810419-810874 5.32e-01 100 chrXV:83159-83446 4.16e-01 100 chrIV:322808-323345 1.30e-01 100 chrVIII:148935-149273 6.72e-01 100 chrII:414012-414253 9.97e-01 100 chrXIV:88889-89732 7.84e-01 100 chrIV:555802-556096 8.21e-01 100 chrIV:449576-449947 1.00e+00 100 chrIII:127529-127919 1.08e-07 51_[+2(3.54e-11)]_20 chrX:354052-354152 9.03e-04 36_[+2(5.86e-07)]_35 chrIV:358110-358407 9.57e-01 100 chrXII:1064121-1064585 9.56e-01 100 chrXIII:296777-298869 7.75e-01 100 chrII:642858-643266 8.76e-08 3_[-1(2.59e-07)]_5_[-2(2.21e-07)]_\ 42 chrXVI:731904-732312 3.53e-01 100 chrXIII:808087-808520 7.32e-09 1_[-1(1.93e-08)]_4_[-2(2.34e-06)]_\ 45 chrXII:806066-806490 1.89e-01 100 chrVII:483-754 2.62e-02 65_[-2(1.34e-05)]_6 chrIV:465166-465511 4.24e-01 100 chrIV:130561-130975 3.52e-01 100 chrXII:95373-95837 8.67e-01 100 chrXIII:652010-652964 3.26e-01 100 chrXII:1017901-1018060 8.03e-01 100 chrXI:313251-313654 1.66e-06 7_[-1(2.77e-07)]_4_[-2(1.34e-05)]_\ 39 chrVIII:105483-105599 3.72e-02 69_[-2(1.05e-05)]_2 chrI:29-253 1.74e-01 100 chrIII:15571-15720 8.90e-02 100 chrXVI:821838-822229 2.53e-01 100 chrVII:806200-806507 1.00e+00 100 chrXV:903955-904491 4.03e-01 100 chrIV:980798-981253 3.56e-10 42_[-2(2.31e-10)]_29 chrXII:282822-283860 5.33e-01 100 chrXIII:225355-225761 8.51e-01 100 chrXV:228130-228559 1.08e-07 46_[+2(3.54e-11)]_25 chrX:617723-617823 1.80e-06 42_[+2(7.77e-08)]_29 chrXVI:303790-303907 4.76e-01 100 chrII:89648-89947 2.31e-02 20_[+2(1.05e-05)]_51 chrVIII:554079-554460 9.96e-01 100 chrXVI:193626-194582 5.02e-01 100 chrXVI:770838-771007 8.18e-01 100 chrIV:386933-387196 8.05e-01 100 chrX:517683-517783 1.64e-07 4_[-1(8.75e-07)]_5_[-2(1.11e-07)]_\ 41 chrXVI:377989-378181 4.32e-01 100 chrII:226868-227378 3.56e-10 10_[+2(2.31e-10)]_61 chrXII:953223-953435 1.02e-01 100 chrXII:1051951-1052330 3.38e-06 15_[-2(7.42e-09)]_56 chrX:156694-156794 6.87e-01 100 chrXVI:794506-794810 5.86e-01 100 chrVII:738934-739365 8.41e-14 32_[+2(7.42e-09)]_5_[+1(3.22e-11)]_\ 13 chrX:663645-663745 7.98e-01 100 chrII:299958-300422 2.77e-01 100 chrVII:787070-787309 6.63e-01 100 chrIV:434001-434554 3.42e-13 45_[-1(1.08e-08)]_5_[-2(1.56e-11)] chrV:307245-307410 6.27e-01 100 chrVIII:74956-75390 7.68e-01 100 chrXII:282855-283860 1.99e-01 100 chrII:605719-606135 2.77e-02 100 chrXIV:585465-586548 4.54e-01 100 chrVIII:237677-238132 1.27e-10 2_[-1(1.16e-07)]_24_[-2(1.05e-09)]_\ 24 chrIV:322426-322656 8.14e-01 100 chrXVI:55869-56478 1.93e-03 54_[-1(4.43e-07)]_25 chrXII:794105-795348 2.51e-01 100 chrVII:110444-110891 1.66e-06 16_[-1(2.77e-07)]_4_[-2(1.34e-05)]_\ 30 chrXVI:520169-520548 6.88e-02 100 chrXV:622521-622845 6.08e-01 100 chrVII:148013-148414 9.96e-01 100 chrXV:424229-424693 3.82e-01 100 chrXII:636808-639387 9.09e-01 100 chrIV:1355731-1355981 9.70e-01 100 chrIII:228703-229167 4.96e-01 100 chrXI:430785-431000 9.19e-01 100 chrVIII:125924-126317 5.66e-01 100 chrXVI:860179-860616 1.81e-21 31_[+3(4.76e-18)]_11_[+1(1.09e-10)]_\ 7 chrXVI:769014-769502 4.03e-14 7_[-1(3.26e-10)]_28_[-2(7.72e-11)]_\ 15 chrXVI:302679-303008 2.46e-01 100 chrXI:552043-552507 1.40e-01 100 chrXIII:420315-420852 4.89e-06 63_[-1(5.18e-09)]_16 chrXIII:306111-306427 9.70e-01 100 chrIV:802566-803004 1.50e-09 4_[-1(2.63e-09)]_4_[-2(3.09e-06)]_\ 42 chrIV:1525228-1525719 8.70e-02 100 chrXIII:372307-372710 2.70e-03 21_[-2(6.87e-06)]_50 chrXII:709343-709573 3.81e-01 100 chrXVI:856681-857120 3.76e-06 60_[+2(1.57e-07)]_11 chrIX:394671-395157 5.57e-01 100 chrVII:856712-856989 4.89e-01 100 chrIV:1461541-1462043 8.03e-05 48_[-2(5.28e-07)]_23 chrV:135213-135695 5.31e-14 29_[-1(9.23e-11)]_5_[-2(1.62e-10)]_\ 16 chrXIV:442810-443361 2.95e-01 100 chrXIV:415818-416095 9.45e-01 100 chrXIII:880394-880858 7.83e-01 100 chrXII:728252-728511 1.24e-01 100 chrXV:167967-168445 1.37e-01 100 chrXVI:214880-215166 5.70e-01 100 chrXVI:689365-689821 6.11e-10 30_[+2(1.02e-11)]_41 chrXIV:331670-331805 2.29e-01 100 chrIV:520782-521195 1.50e-09 42_[+2(3.09e-06)]_4_[+1(2.63e-09)]_\ 4 chrI:53-517 9.70e-02 100 chrXV:796951-797323 1.50e-01 100 chrII:428134-428598 1.69e-01 100 chrXI:578779-579264 4.03e-14 2_[+2(7.72e-11)]_28_[+1(3.26e-10)]_\ 20 chrXIV:575255-575674 7.23e-01 100 chrX:139174-139274 1.16e-01 100 chrXI:334123-334429 9.94e-01 100 chrXVI:193119-193427 5.95e-01 100 chrXIV:576961-577291 9.14e-01 100 chrIII:178314-178707 9.35e-01 100 chrXII:645939-646403 5.52e-01 100 chrXIII:124311-124703 3.34e-01 100 chrVII:310506-311047 1.16e-01 100 chrVII:661552-661963 1.18e-02 49_[+2(4.06e-06)]_22 chrVII:1057331-1057795 7.28e-01 100 chrV:86069-86856 3.78e-01 100 chrXV:976209-976715 8.55e-09 17_[+2(6.50e-07)]_5_[+1(5.62e-08)]_\ 28 chrIV:488512-489088 2.31e-05 55_[-1(2.08e-09)]_24 chrV:487172-487579 8.91e-08 14_[-1(4.36e-10)]_4_[-2(3.64e-05)]_\ 32 chrVIII:562205-562633 9.86e-01 100 chrVII:555302-555705 1.59e-01 100 chrXVI:654502-654740 2.90e-01 100 chrXIII:733141-733605 4.52e-01 100 chrVII:919956-920226 3.67e-01 100 chrIV:44118-44582 9.71e-01 100 chrVII:366085-366585 4.89e-01 100 chrXV:723528-723992 6.84e-02 100 chrXII:92353-92815 1.11e-12 13_[+3(6.96e-16)]_57 chrXIV:104605-105106 3.42e-13 8_[+2(1.56e-11)]_5_[+1(1.08e-08)]_\ 37 chrXV:281972-282380 1.81e-21 37_[+3(4.76e-18)]_11_[+1(1.09e-10)]_\ 1 chrXIV:229725-230101 8.68e-01 100 chrIX:99622-100025 9.97e-01 100 chrVII:365207-365398 5.25e-01 100 chrXI:432126-432449 9.77e-01 100 chrV:151964-152231 9.64e-01 100 chrXV:113615-114000 4.84e-08 53_[+2(1.56e-11)]_18 chrVII:323809-323998 8.52e-01 100 chrXI:140843-141274 8.60e-08 18_[-1(4.36e-10)]_4_[-2(3.64e-05)]_\ 28 chrXIII:732026-732409 6.37e-01 100 chrIV:1489081-1489950 8.38e-01 100 chrVII:328384-328949 8.06e-07 8_[+1(4.36e-10)]_71 chrXVI:76339-76730 5.06e-01 100 chrX:414776-414876 5.31e-14 28_[+2(1.62e-10)]_5_[+1(9.23e-11)]_\ 17 chrXVI:775616-776025 8.76e-08 3_[-1(2.59e-07)]_5_[-2(2.21e-07)]_\ 42 chrXV:505091-505518 1.20e-01 100 chrXIII:362867-363307 1.66e-06 35_[+2(1.34e-05)]_4_[+1(2.77e-07)]_\ 11 chrV:469262-469665 3.21e-03 53_[+2(6.87e-06)]_18 chrXII:592379-592816 1.91e-06 33_[-2(7.77e-08)]_38 chrXV:624079-624514 6.70e-01 100 chrVII:912511-912975 9.20e-01 100 chrII:613374-613838 3.07e-02 100 chrIV:385877-386341 3.90e-01 100 chrVII:779422-779846 2.07e-08 31_[+3(2.89e-05)]_12_[+1(5.77e-10)]_\ 6 chrX:157448-157548 8.53e-02 100 chrIX:324150-324560 3.39e-07 6_[-1(6.64e-08)]_4_[-2(4.53e-05)]_\ 40 chrVII:706936-707385 8.76e-08 6_[-1(2.59e-07)]_5_[-2(2.21e-07)]_\ 39 chrVII:1000329-1000549 4.60e-02 100 chrIV:538936-539235 2.78e-02 75_[+1(2.98e-05)]_4 chrVII:914948-915081 9.22e-01 100 chrXVI:404573-405726 2.30e-01 100 chrVI:162036-162429 3.57e-14 45_[+3(4.76e-18)]_25 chrIV:1352298-1352735 5.31e-14 8_[-1(9.23e-11)]_5_[-2(1.62e-10)]_\ 37 chrVII:73688-74144 4.46e-01 100 chrIV:915869-916160 9.91e-01 100 chrIX:248638-249397 1.69e-01 100 chrX:651256-651356 7.29e-01 100 chrXII:1012133-1012381 3.23e-02 100 chrX:538363-538463 7.61e-04 49_[+2(1.57e-07)]_22 chrV:77579-77868 9.69e-01 100 chrIV:359382-359848 4.03e-14 20_[+2(7.72e-11)]_28_[+1(3.26e-10)]_\ 2 chrXVI:75451-75810 4.22e-01 100 chrXV:866560-866991 1.65e-01 100 chrXII:796391-796866 2.10e-01 100 chrXII:687635-688118 9.02e-08 41_[-1(5.18e-09)]_5_[-2(6.87e-06)]_\ 4 chrXIV:715973-716601 5.92e-02 100 chrII:557229-557459 6.49e-01 100 chrX:606393-606493 5.77e-01 100 chrXV:409390-409854 9.73e-01 100 chrIII:14588-14721 5.22e-01 100 chrVII:319582-320040 1.66e-06 28_[+2(1.34e-05)]_4_[+1(2.77e-07)]_\ 18 chrXIV:771896-772393 7.66e-02 100 chrXIII:226311-226775 7.35e-01 100 chrXV:253777-254127 4.21e-01 100 chrIX:255401-255789 1.48e-01 100 chrXV:722955-723419 1.60e-01 100 chrII:477034-477515 1.68e-01 100 chrXII:628185-628671 1.86e-04 14_[+2(5.28e-07)]_57 chrIV:309373-309842 5.06e-01 100 chrXII:1018965-1019355 9.28e-01 100 chrXII:498509-498895 8.86e-01 100 chrVIII:475515-475958 6.98e-08 28_[-1(3.26e-10)]_5_[-2(5.61e-05)]_\ 17 chrIV:1441290-1441754 6.03e-01 100 chrV:145551-146015 4.96e-01 100 chrVII:609448-610089 9.77e-01 100 chrVII:544340-544848 3.39e-07 41_[-1(6.64e-08)]_4_[-2(4.53e-05)]_\ 5 chrXI:163696-164073 1.84e-01 100 chrV:443088-443497 2.38e-02 100 chrX:204527-204627 5.40e-02 52_[+2(4.53e-05)]_19 chrVI:4407-5010 2.61e-02 43_[-2(6.91e-05)]_28 chrV:99931-100387 1.64e-07 31_[+2(1.11e-07)]_5_[+1(8.75e-07)]_\ 14 chrXII:243046-243510 9.14e-01 100 chrVII:545397-545620 9.56e-01 100 chrXV:505862-506326 7.67e-01 100 chrIII:163442-163913 2.98e-02 100 chrXII:806751-806997 9.77e-01 100 chrV:101055-101519 9.52e-01 100 chrIV:1239643-1239960 6.39e-01 100 chrX:90069-90169 2.73e-01 100 chrVIII:451397-452950 1.93e-01 100 chrIX:257343-257732 7.03e-02 100 chrIV:884166-884642 6.69e-07 15_[+2(8.84e-07)]_56 chrI:151592-152056 7.37e-01 100 chrX:451321-451421 4.33e-01 100 chrXIII:220507-220971 5.73e-01 100 chrXII:1028220-1028597 9.55e-01 100 chrXIII:226081-226545 1.24e-01 100 chrXI:308011-308408 1.44e-03 19_[-2(6.87e-06)]_52 chrX:390888-390988 7.02e-05 23_[-2(6.50e-07)]_48 chrIV:490925-491279 5.54e-01 100 chrXIV:444453-444777 2.36e-01 100 chrXII:922100-922545 8.46e-02 100 chrXI:382173-382464 1.45e-02 100 chrXIV:415589-415869 2.98e-01 100 chrXIII:259010-259441 1.08e-08 26_[-2(2.31e-10)]_45 chrIV:1080522-1080832 6.21e-01 100 chrXIV:725997-726421 8.07e-06 19_[-2(8.76e-08)]_52 chrXVI:718405-719069 7.47e-01 100 chrX:355177-355277 2.36e-06 25_[+1(1.84e-09)]_54 chrVI:157762-158208 2.67e-06 34_[-2(1.05e-09)]_37 chrXVI:113253-113717 1.15e-01 100 chrX:608839-608939 9.31e-01 100 chrXIV:96054-96507 2.07e-08 19_[-1(5.77e-10)]_12_[-3(2.89e-05)]_\ 18 chrXIII:837721-838126 7.89e-04 65_[+2(5.86e-07)]_6 chrIX:138474-138946 5.83e-01 100 chrXII:734605-735027 8.41e-14 45_[+2(7.42e-09)]_5_[+1(3.22e-11)] chrXIV:783822-784188 4.81e-01 100 chrVII:115296-115772 4.03e-14 12_[+2(7.72e-11)]_28_[+1(3.26e-10)]_\ 10 chrX:422743-422843 4.58e-08 3_[+2(6.50e-07)]_5_[+1(5.62e-08)]_\ 42 chrV:551107-551532 8.41e-14 24_[-1(3.22e-11)]_5_[-2(7.42e-09)]_\ 21 chrXIII:195908-196394 1.11e-12 39_[-3(6.96e-16)]_31 chrXIII:145892-146310 3.37e-03 29_[-2(1.70e-05)]_42 chrIV:1302165-1302281 9.95e-01 100 chrXVI:645348-645721 7.12e-01 100 chrVIII:115922-116379 3.42e-13 15_[-1(1.08e-08)]_5_[-2(1.56e-11)]_\ 30 chrVIII:504364-504542 8.26e-01 100 chrXIV:229725-230171 7.03e-01 100 chrVII:828498-828991 1.26e-10 37_[-1(1.84e-09)]_5_[-2(9.87e-08)]_\ 8 chrVII:405258-405736 1.26e-10 30_[+2(9.87e-08)]_5_[+1(1.84e-09)]_\ 15 chrXII:713135-713570 9.87e-01 100 chrIV:976124-976497 5.64e-01 100 chrI:166052-166518 1.89e-12 40_[+2(4.17e-09)]_5_[+1(5.51e-11)]_\ 5 chrVI:101188-101616 1.11e-12 23_[+3(6.96e-16)]_47 chrVII:205333-205767 1.11e-04 30_[+2(1.45e-06)]_41 chrXI:490770-491199 3.08e-09 42_[+2(3.10e-09)]_5_[+1(2.59e-07)]_\ 3 chrV:303114-303275 5.75e-01 100 chrIV:579063-579407 2.45e-01 100 chrXVI:303417-303832 1.46e-01 100 chrXIV:631694-632107 2.30e-20 4_[-1(1.43e-12)]_12_[-3(4.99e-14)]_\ 33 chrVIII:388729-389190 1.11e-12 56_[-3(6.96e-16)]_14 chrXIV:234178-234642 1.75e-01 100 chrVIII:80206-80670 6.47e-02 100 chrXI:283078-283575 9.89e-01 100 chrXI:158216-158611 4.31e-01 100 chrIV:1201549-1202022 5.31e-14 23_[+2(1.62e-10)]_5_[+1(9.23e-11)]_\ 22 chrVII:185547-185975 4.74e-14 11_[-1(9.23e-11)]_5_[-2(1.62e-10)]_\ 34 chrXII:84144-84441 6.02e-02 100 chrX:608548-608648 1.82e-01 100 chrIV:410196-410604 2.01e-11 37_[+2(1.57e-07)]_5_[+1(2.63e-09)]_\ 8 chrIX:131856-132045 3.56e-01 100 chrXIV:569719-570109 8.41e-14 11_[-1(3.22e-11)]_5_[-2(7.42e-09)]_\ 34 chrXII:952535-952932 9.84e-01 100 chrIV:929312-929492 9.85e-01 100 chrII:36217-36620 1.70e-06 38_[+2(1.05e-09)]_33 chrIII:138341-138862 7.09e-01 100 chrVI:137289-137737 6.30e-12 31_[-1(1.25e-07)]_5_[-2(3.54e-11)]_\ 14 chrIX:370208-370620 5.11e-02 61_[+2(3.64e-05)]_10 chrIII:56-648 2.85e-01 100 chrIX:98432-98632 8.90e-01 100 chrIV:45252-45447 3.68e-03 79_[+1(2.13e-06)] chrVII:876198-876678 5.31e-14 14_[+2(1.62e-10)]_5_[+1(9.23e-11)]_\ 31 chrXV:93628-94240 7.09e-01 100 chrXI:618808-619201 1.09e-01 100 chrIV:1401266-1401608 1.45e-01 100 chrII:592889-593280 9.03e-02 100 chrXIV:560498-560960 3.42e-13 22_[-1(1.08e-08)]_5_[-2(1.56e-11)]_\ 23 chrVII:882400-883991 4.76e-01 100 chrX:415817-415917 6.24e-04 26_[-2(4.44e-06)]_45 chrXIII:626483-626916 9.01e-01 100 chrXIII:253339-253623 2.05e-01 100 chrX:424324-424424 8.07e-06 2_[-2(8.76e-08)]_69 chrV:492188-492625 3.08e-09 4_[-1(2.59e-07)]_5_[-2(3.10e-09)]_\ 41 chrV:152674-153138 9.97e-01 100 chrVII:366085-366598 7.30e-01 100 chrXII:818808-819189 6.48e-01 100 chrVII:255216-255515 2.47e-01 100 chrXII:1064815-1065378 1.31e-01 100 chrV:140246-140895 6.21e-01 100 chrX:348911-349011 6.33e-01 100 chrVII:149096-149519 1.47e-01 100 chrIII:177134-177637 5.33e-01 100 chrXII:930829-931123 7.48e-02 100 chrVII:987385-987623 2.98e-01 100 chrXVI:699945-700406 2.25e-02 4_[-3(5.34e-05)]_66 chrVII:278280-278627 7.02e-01 100 chrII:60818-61267 7.60e-01 100 chrX:121068-121168 2.59e-01 100 chrV:434366-434812 1.66e-06 10_[-1(2.77e-07)]_4_[-2(1.34e-05)]_\ 36 chrVII:736109-736634 1.26e-10 26_[+2(9.87e-08)]_5_[+1(1.84e-09)]_\ 19 chrXIII:302810-303103 2.29e-01 100 chrXV:832275-832763 8.81e-01 100 chrVIII:358324-358761 2.36e-06 39_[-2(1.05e-09)]_32 chrIV:1013719-1013955 3.94e-01 100 chrVIII:175050-175377 8.43e-03 100 chrIX:386633-386921 5.33e-01 100 chrXVI:406171-406570 2.21e-01 100 chrV:122465-122625 3.97e-02 100 chrII:9392-9837 2.89e-08 28_[+2(8.76e-08)]_20_[-1(1.63e-06)]_\ 2 chrXII:781432-781851 7.38e-01 100 chrI:182397-182843 1.57e-01 100 chrXII:198835-199706 6.61e-01 100 chrV:85738-86135 1.68e-01 100 chrXIII:183754-184149 1.81e-21 5_[-1(1.09e-10)]_11_[-3(4.76e-18)]_\ 33 chrII:478896-479319 9.99e-01 100 chrII:375426-375890 4.86e-01 100 chrX:702549-702649 1.13e-01 100 chrXIV:63083-63587 1.83e-02 19_[+2(2.51e-05)]_52 chrXIII:761765-762293 9.68e-01 100 chrX:374264-374364 1.26e-10 45_[-1(1.84e-09)]_5_[-2(9.87e-08)] chrXIII:633112-633576 9.35e-01 100 chrXII:234557-235021 8.56e-01 100 chrIII:123413-123828 2.30e-20 15_[-1(1.43e-12)]_12_[-3(4.99e-14)]_\ 22 chrXV:216220-216693 1.67e-01 100 chrXV:487250-487673 6.30e-12 37_[+2(3.54e-11)]_5_[+1(1.25e-07)]_\ 8 chrVII:311012-312254 9.01e-01 100 chrXV:619256-619501 3.71e-01 100 chrXIII:5254-5866 1.96e-02 61_[-2(6.45e-05)]_10 chrVI:64934-65338 1.79e-01 100 chrXIV:414535-414761 6.17e-01 100 chrV:305766-306246 4.51e-01 100 chrXIII:163160-163730 9.48e-01 100 chrXI:517788-518201 1.04e-05 52_[+2(1.57e-07)]_19 chrXI:29-281 5.16e-02 100 chrII:604116-604523 1.84e-01 100 chrVIII:466784-467196 1.18e-02 57_[+2(4.06e-06)]_14 chrVIII:505797-506197 4.11e-01 100 chrXV:1028624-1029100 2.74e-01 100 chrXI:518806-519275 4.82e-01 100 chrX:74560-74660 9.53e-01 100 chrVIII:148253-148499 3.24e-01 100 chrXV:908548-909012 1.31e-01 100 chrII:165057-165509 1.33e-01 100 chrXVI:173207-173890 9.24e-01 100 chrXIII:168591-169105 1.46e-07 7_[+2(5.86e-07)]_19_[+1(6.64e-08)]_\ 24 chrII:405656-406172 1.26e-10 21_[+2(9.87e-08)]_5_[+1(1.84e-09)]_\ 24 chrIV:437583-437991 7.13e-09 43_[+2(2.31e-10)]_28 chrXV:426595-427059 5.93e-01 100 chrXI:99719-100014 7.37e-01 100 chrV:250093-250532 1.50e-09 32_[+2(3.09e-06)]_4_[+1(2.63e-09)]_\ 14 chrXIII:551347-551812 4.21e-01 100 chrXII:720573-721037 4.77e-01 100 chrXII:282492-282868 2.22e-01 100 chrXII:875193-875634 4.03e-14 21_[+2(7.72e-11)]_28_[+1(3.26e-10)]_\ 1 chrII:415498-415874 1.22e-01 33_[+2(9.68e-05)]_38 chrXIII:388334-388628 1.70e-01 100 chrII:301224-301442 7.22e-01 100 chrVII:344399-344877 7.63e-01 100 chrVII:401385-401813 9.05e-02 11_[-2(3.64e-05)]_60 chrII:606715-607179 1.99e-01 100 chrV:138474-139122 5.65e-01 100 chrVII:823284-823717 1.96e-08 41_[+2(6.87e-06)]_5_[+1(5.18e-09)]_\ 4 chrXV:663590-664058 1.40e-06 46_[-1(5.18e-09)]_33 chrXV:305108-305572 1.00e+00 100 chrII:235196-235383 8.53e-01 100 chrIV:341265-341628 4.42e-04 33_[+2(1.60e-06)]_38 chrVII:788296-788731 6.66e-01 100 chrXV:438443-438924 4.03e-14 18_[+2(7.72e-11)]_28_[+1(3.26e-10)]_\ 4 chrXIII:161993-162392 9.60e-01 100 chrXV:725203-725667 9.41e-01 100 chrXV:594202-594616 2.15e-13 3_[-1(5.78e-09)]_12_[-3(2.46e-09)]_\ 34 chrVII:345809-346652 4.66e-01 100 chrXIII:306459-307049 5.60e-01 100 chrIV:83372-83766 1.81e-21 28_[+3(4.76e-18)]_11_[+1(1.09e-10)]_\ 10 chrVII:254115-254571 3.11e-02 100 chrIII:107295-107747 9.11e-01 100 chrXII:515174-515638 4.65e-01 100 chrXII:214726-215151 1.89e-12 3_[-1(5.51e-11)]_5_[-2(4.17e-09)]_\ 42 chrVII:278014-278344 5.76e-01 100 chrVII:364163-364408 6.75e-01 100 chrIV:580072-580606 4.80e-01 100 chrXIII:733080-733206 4.13e-01 100 chrIV:118371-118704 8.97e-01 100 chrXII:5386-5954 4.86e-02 42_[-2(6.91e-05)]_29 chrXIV:495165-495598 3.20e-02 50_[+2(3.64e-05)]_21 chrIV:332056-332520 7.10e-01 100 chrXVI:572075-572544 1.81e-21 9_[+3(4.76e-18)]_11_[+1(1.09e-10)]_\ 29 chrXII:263659-263889 7.83e-01 100 chrIX:68204-68545 9.14e-01 100 chrVII:807147-807378 9.61e-01 100 chrX:531632-531732 1.37e-06 15_[+1(1.09e-10)]_64 chrX:453463-453563 9.10e-01 100 chrIV:45838-46061 9.92e-01 100 chrII:197303-197917 3.93e-07 77_[-1(1.09e-10)]_2 chrXVI:701289-701490 1.63e-01 100 chrXII:710585-710887 1.26e-01 100 chrIV:645010-645422 8.34e-05 20_[-2(3.09e-06)]_51 chrXIII:923349-923813 3.68e-01 100 chrIII:107295-107720 9.10e-01 100 chrVII:1050219-1050519 8.41e-01 100 chrXV:1016807-1017271 6.96e-01 100 chrVII:475924-476388 6.01e-01 100 chrII:326645-327063 3.59e-05 22_[-2(1.70e-05)]_49 chrVIII:134142-134525 1.50e-09 46_[+2(3.09e-06)]_4_[+1(2.63e-09)] chrXIV:499337-499642 4.06e-01 100 chrV:23513-23891 3.66e-01 100 chrX:541300-541400 3.39e-07 41_[+2(4.53e-05)]_4_[+1(6.64e-08)]_\ 5 chrXII:796971-797393 5.32e-02 54_[+2(3.64e-05)]_17 chrXVI:378640-379005 4.68e-01 100 chrXIV:625947-626411 8.21e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************