Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.015793
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.056929
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.07392
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.014616
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.068915
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background
Finished invoke:
  name: bg  status: 0  time: 0.012245
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 897.857299
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 86.924674
Invoking:
  centrimo -seqlen 410 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.168123
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.404992
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background -primary RNSSCTYWACCVACTNGGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.378171
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background -primary SMCTHNTAATCWGRAGRTCMBSGGTTCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.326626
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background -primary RDRRTGTAYGGRTGTD /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.336276
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background -primary AARAAAWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.255559
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background -primary CCWTAACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.202938
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background -primary ACCACTAH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.19231
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.194532
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background -primary CATYACGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.184112
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background -primary AGAAATCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.187704
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background -primary TCCACGGW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.180692
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background -primary CTWGACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.185198
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background -primary CWGACGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.200128
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background -primary CTCCMTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.18115
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background --motif RNSSCTYWACCVACTNGGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.252016
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background --motif SMCTHNTAATCWGRAGRTCMBSGGTTCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.255132
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background --motif RDRRTGTAYGGRTGTD /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.241327
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background --motif AARAAAWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.177439
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background --motif CCWTAACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.16161
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background --motif ACCACTAH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.163417
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.162042
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background --motif CATYACGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.161649
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background --motif AGAAATCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.159801
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background --motif TCCACGGW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.161819
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background --motif CTWGACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.159327
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background --motif CWGACGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.18874
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background --motif CTCCMTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/BY4742--MIG2.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.162928
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.154774
Done