******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrXI:618817-619178 1.0000 100 chrIV:1156317-1156641 1.0000 100 chrIV:929137-929547 1.0000 100 chrXIII:290637-290972 1.0000 100 chrX:160066-160166 1.0000 100 chrXII:1064838-1065353 1.0000 100 chrXIII:540310-540771 1.0000 100 chrVIII:105541-105951 1.0000 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100 chrXV:761530-761940 1.0000 100 chrXV:968063-968414 1.0000 100 chrXIII:504721-505133 1.0000 100 chrIV:45793-46203 1.0000 100 chrXV:409677-410087 1.0000 100 chrXIV:628794-628976 1.0000 100 chrIV:992635-993025 1.0000 100 chrXIII:888636-888766 1.0000 100 chrVII:878586-878989 1.0000 100 chrIV:891993-892403 1.0000 100 chrVII:794256-794599 1.0000 100 chrXV:110188-110598 1.0000 100 chrXII:92369-92810 1.0000 100 chrIII:124779-125189 1.0000 100 chrIV:835763-836243 1.0000 100 chrXV:866575-866943 1.0000 100 chrIV:1461584-1462011 1.0000 100 chrXI:108754-109092 1.0000 100 chrIV:946125-946584 1.0000 100 chrVII:648962-649346 1.0000 100 chrXII:348149-348523 1.0000 100 chrIII:227784-228164 1.0000 100 chrXIII:761832-762241 1.0000 100 chrVIII:160384-160794 1.0000 100 chrXVI:210072-210436 1.0000 100 chrVII:845467-845840 1.0000 100 chrXIV:234215-234625 1.0000 100 chrXVI:520191-520525 1.0000 100 chrVII:700494-701228 1.0000 100 chrXII:820048-820458 1.0000 100 chrXI:334516-334695 1.0000 100 chrXII:628211-628639 1.0000 100 chrXI:538-750 1.0000 100 chrVII:648163-648338 1.0000 100 chrVIII:382925-383305 1.0000 100 chrXIII:163676-163863 1.0000 100 chrXV:1006905-1007077 1.0000 100 chrXV:854042-854440 1.0000 100 chrX:172686-172786 1.0000 100 chrXIII:499711-499952 1.0000 100 chrX:651269-651369 1.0000 100 chrXII:897720-898032 1.0000 100 chrVIII:556202-556316 1.0000 100 chrXVI:794511-794800 1.0000 100 chrX:451267-451367 1.0000 100 chrX:123523-123623 1.0000 100 chrXII:424062-424480 1.0000 100 chrVIII:103902-104241 1.0000 100 chrIX:386626-386914 1.0000 100 chrXI:518836-519252 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 568 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 56800 N= 568 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.298 C 0.202 G 0.202 T 0.298 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MIG2/background): A 0.306 C 0.194 G 0.194 T 0.306 ******************************************************************************** ******************************************************************************** MOTIF RNSSCTYWACCVACTNGGCCA MEME-1 width = 21 sites = 75 llr = 1242 E-value = 2.4e-222 ******************************************************************************** -------------------------------------------------------------------------------- Motif RNSSCTYWACCVACTNGGCCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 421::11573:49::211::a pos.-specific C 1265923:17a3:9:22:a8: probability G 3345:21:2::31::469::: matrix T 13::1555:::::1a2:::2: bits 2.4 * * 2.1 * * 1.9 * * * 1.7 * * ** ** * Relative 1.4 ** * *** **** Entropy 1.2 *** ** *** **** (23.9 bits) 0.9 *** ** *** ***** 0.7 *** **** *** ***** 0.5 *** ********* ***** 0.2 * ******************* 0.0 --------------------- Multilevel AGCGCTTTACCAACTGGGCCA consensus GTGC CCA A C CC T sequence C G G A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNSSCTYWACCVACTNGGCCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrV:443109-443459 + 14 3.83e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCAAA chrVII:738958-739340 - 30 3.83e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCTAT chrXII:734644-734979 - 48 3.83e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCAAA chrXVI:819342-819754 - 38 3.83e-11 TATTAGCACG GTGCCTTAACCAACTGGGCCA AGAGACCATT chrIV:434067-434515 + 68 6.09e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTTC chrXIV:104632-105051 - 21 6.09e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTCA chrXV:113644-113971 - 52 6.09e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTAA chrVIII:115949-116363 + 46 6.09e-11 TTACTAGTGT GGCGCCTTACCAACTTGGCCA TAGAAGCTCT chrXV:854042-854440 + 41 1.16e-10 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA TGTGCCCTGA chrVII:794256-794599 - 47 1.16e-10 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA TGTGCCCGCA chrV:311823-312268 + 73 1.16e-10 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA TGTGCCC chrI:166086-166495 - 34 1.16e-10 TTGCAAGGGA AGCGCGCTACCAACTGCGCCA TGTGCCCAAC chrIII:127546-127888 - 56 3.40e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCATT chrXVI:810486-810856 - 62 3.40e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCGCA chrVI:137333-137725 + 53 3.40e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCAGT chrXV:487262-487628 - 51 3.40e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTAA chrXIV:102537-102911 - 49 3.40e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTTA chrVII:730959-731345 - 42 3.40e-10 TAACAGTCGC ACGCCTTAACCAACTTGGCCA TGGAGTCTTT chrXVI:856719-857090 - 55 5.53e-10 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCGAA chrX:197208-197308 + 29 5.53e-10 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCTAA chrXI:219715-220083 - 53 5.53e-10 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCTAT chrIV:410216-410583 - 37 5.53e-10 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCAAT chrXII:656823-657180 + 28 5.53e-10 ATGCTAAGGG AGCGCGCTACCGACTACGCCA CACGCCCAAT chrXII:731932-732291 - 36 7.51e-10 CCTAAATCTG ACGCCTTAAACCACTCGGCCA AACTCCCATT chrXV:274488-274911 - 31 7.51e-10 ATAGCAGGGC ATCGCCTTAACCACTCGGCCA CTGGGACACG chrIII:227784-228164 - 25 2.30e-09 ATTCGAGTCT CTCGCCTTAACCACTCGGCCA TAGTGCCATT chrIV:980849-981222 + 43 2.97e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCTCA chrI:182420-182787 + 23 2.97e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCAAA chrXIII:259056-259410 + 29 2.97e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCATA chrX:523896-523996 + 34 2.97e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCTTT chrV:86388-86840 - 47 2.97e-09 TTTCTAATCT TTCGCCTTAACCACTCGGCCA AGTTGCCATA chrXII:962876-963229 + 26 7.61e-09 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCGTC chrIV:519577-519924 - 50 7.61e-09 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCGTA chrXIV:726019-726402 + 30 7.61e-09 CTTAAGTCTG CCGCCTTAGACCACTCGGCCA ACCCTCCAAA chrXV:438478-438909 - 7 1.05e-08 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGG chrIV:359396-359806 - 33 1.05e-08 TTAAAAGCCG AACGCTCTACCAACTGAGCTA ACAAGGATGA chrXII:628211-628639 - 15 1.44e-08 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrIV:1461584-1462011 + 55 1.44e-08 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrXIII:504721-505133 - 25 1.44e-08 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrVII:205353-205758 - 23 1.44e-08 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrVII:857276-857650 + 51 1.44e-08 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrVII:422908-423339 - 26 1.44e-08 CTTGAATCAG GCGCCTTAGACCGCTCGGCCA AACAACCACT chrXIV:374714-375068 - 35 2.13e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AGTCCGCTTA chrVII:440539-441001 + 60 2.13e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCATA chrXIII:352101-352485 - 44 2.13e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrII:36230-36579 - 51 2.13e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCTTA chrXVI:622414-622813 + 41 2.13e-08 TCTTCAGTCT GGCGCTCTCCCAACTGAGCTA AATCCGCATA chrVII:122117-122517 - 9 2.35e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCT chrVI:226546-226927 + 47 2.35e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCATT chrV:135231-135668 + 71 2.35e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTT chrIV:1201575-1201986 - 27 2.35e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAT chrIV:1352340-1352713 + 35 2.35e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAT chrVII:876225-876599 - 39 2.35e-08 TTAAGAGTCA TACGCGCTACCGATTGCGCCA ACAAGGCTAT chrVII:73729-74101 + 10 2.83e-08 GTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCACT chrV:469286-469609 - 67 2.83e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCAAT chrXI:308039-308383 + 29 2.83e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCACT chrVIII:85221-85538 + 15 2.83e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCAAA chrX:378177-378277 - 49 2.83e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCTAT chrXI:379505-379848 - 61 2.83e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCTAT chrXV:663672-664044 + 50 2.83e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCACT chrXIII:372336-372691 + 28 2.83e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCAGG chrVII:823309-823691 - 39 2.83e-08 TGTTAAGCAG ATGCCATAACCGACTAGACCA CGAAACCACT chrXII:374183-374590 - 26 7.87e-08 TTCGTAGCCA GACGCCGTGACCATTGGGCCA CGAGGAACAA chrXI:490805-491134 - 56 7.87e-08 TTCGTAGCCA GACGCCGTGACCATTGGGCCA CGAGGAACAA chrV:492211-492602 + 41 7.87e-08 TTCGTAGCCA GACGCCGTGACCATTGGGCCA CGAGGAATAG chrIV:884199-884615 - 11 1.89e-07 CTATAAGCAC GAAGCTCTAACCACTGAGCTA CACGAGCATT chrXII:605187-605588 + 68 1.89e-07 CTATAAGCAC GAAGCTCTAACCACTGAGCTA CACGAGCATT chrIV:946125-946584 - 15 4.26e-07 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTCG chrX:354073-354173 - 33 4.26e-07 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTGA chrVI:210506-210873 + 41 4.26e-07 TACAGTCTTG CGCCTTAAACCAACTTGGCTA CCGAGAGTCG chrXIII:168622-169081 - 1 4.26e-07 TACAGTCTTG CGCCTTAAACCAACTTGGCTA chrXV:976235-976703 - 9 5.33e-07 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCG chrX:390918-391018 + 26 5.33e-07 TTATGAGACT GACGCTCTTCCTACTGAGCTA CTGAAGCACT chrXV:989081-989444 + 35 1.02e-06 AGCGACAGGC ACACGCGAACCGGCTAGGCCA CCCAAACGTC chrX:538384-538484 - 56 6.56e-06 CTTAGGAGGG AGACGCGTTACCATTACGCCA ACGGAACCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNSSCTYWACCVACTNGGCCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:443109-443459 3.8e-11 13_[+1]_66 chrVII:738958-739340 3.8e-11 29_[-1]_50 chrXII:734644-734979 3.8e-11 47_[-1]_32 chrXVI:819342-819754 3.8e-11 37_[-1]_42 chrIV:434067-434515 6.1e-11 67_[+1]_12 chrXIV:104632-105051 6.1e-11 20_[-1]_59 chrXV:113644-113971 6.1e-11 51_[-1]_28 chrVIII:115949-116363 6.1e-11 45_[+1]_34 chrXV:854042-854440 1.2e-10 40_[+1]_39 chrVII:794256-794599 1.2e-10 46_[-1]_33 chrV:311823-312268 1.2e-10 72_[+1]_7 chrI:166086-166495 1.2e-10 33_[-1]_46 chrIII:127546-127888 3.4e-10 55_[-1]_24 chrXVI:810486-810856 3.4e-10 61_[-1]_18 chrVI:137333-137725 3.4e-10 52_[+1]_27 chrXV:487262-487628 3.4e-10 50_[-1]_29 chrXIV:102537-102911 3.4e-10 48_[-1]_31 chrVII:730959-731345 3.4e-10 41_[-1]_38 chrXVI:856719-857090 5.5e-10 54_[-1]_25 chrX:197208-197308 5.5e-10 28_[+1]_51 chrXI:219715-220083 5.5e-10 52_[-1]_27 chrIV:410216-410583 5.5e-10 36_[-1]_43 chrXII:656823-657180 5.5e-10 27_[+1]_52 chrXII:731932-732291 7.5e-10 35_[-1]_44 chrXV:274488-274911 7.5e-10 30_[-1]_49 chrIII:227784-228164 2.3e-09 24_[-1]_55 chrIV:980849-981222 3e-09 42_[+1]_37 chrI:182420-182787 3e-09 22_[+1]_57 chrXIII:259056-259410 3e-09 28_[+1]_51 chrX:523896-523996 3e-09 33_[+1]_46 chrV:86388-86840 3e-09 46_[-1]_33 chrXII:962876-963229 7.6e-09 25_[+1]_54 chrIV:519577-519924 7.6e-09 49_[-1]_30 chrXIV:726019-726402 7.6e-09 29_[+1]_50 chrXV:438478-438909 1.1e-08 6_[-1]_73 chrIV:359396-359806 1.1e-08 32_[-1]_47 chrXII:628211-628639 1.4e-08 14_[-1]_65 chrIV:1461584-1462011 1.4e-08 54_[+1]_25 chrXIII:504721-505133 1.4e-08 24_[-1]_55 chrVII:205353-205758 1.4e-08 22_[-1]_57 chrVII:857276-857650 1.4e-08 50_[+1]_29 chrVII:422908-423339 1.4e-08 25_[-1]_54 chrXIV:374714-375068 2.1e-08 34_[-1]_45 chrVII:440539-441001 2.1e-08 59_[+1]_20 chrXIII:352101-352485 2.1e-08 43_[-1]_36 chrII:36230-36579 2.1e-08 50_[-1]_29 chrXVI:622414-622813 2.1e-08 40_[+1]_39 chrVII:122117-122517 2.3e-08 8_[-1]_71 chrVI:226546-226927 2.3e-08 46_[+1]_33 chrV:135231-135668 2.3e-08 70_[+1]_9 chrIV:1201575-1201986 2.3e-08 26_[-1]_53 chrIV:1352340-1352713 2.3e-08 34_[+1]_45 chrVII:876225-876599 2.3e-08 38_[-1]_41 chrVII:73729-74101 2.8e-08 9_[+1]_70 chrV:469286-469609 2.8e-08 66_[-1]_13 chrXI:308039-308383 2.8e-08 28_[+1]_51 chrVIII:85221-85538 2.8e-08 14_[+1]_65 chrX:378177-378277 2.8e-08 48_[-1]_31 chrXI:379505-379848 2.8e-08 60_[-1]_19 chrXV:663672-664044 2.8e-08 49_[+1]_30 chrXIII:372336-372691 2.8e-08 27_[+1]_52 chrVII:823309-823691 2.8e-08 38_[-1]_41 chrXII:374183-374590 7.9e-08 25_[-1]_54 chrXI:490805-491134 7.9e-08 55_[-1]_24 chrV:492211-492602 7.9e-08 40_[+1]_39 chrIV:884199-884615 1.9e-07 10_[-1]_69 chrXII:605187-605588 1.9e-07 67_[+1]_12 chrIV:946125-946584 4.3e-07 14_[-1]_65 chrX:354073-354173 4.3e-07 32_[-1]_47 chrVI:210506-210873 4.3e-07 40_[+1]_39 chrXIII:168622-169081 4.3e-07 [-1]_79 chrXV:976235-976703 5.3e-07 8_[-1]_71 chrX:390918-391018 5.3e-07 25_[+1]_54 chrXV:989081-989444 1e-06 34_[+1]_45 chrX:538384-538484 6.6e-06 55_[-1]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNSSCTYWACCVACTNGGCCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RNSSCTYWACCVACTNGGCCA width=21 seqs=75 chrV:443109-443459 ( 14) GTGCCTTAACCAACTGGGCCA 1 chrVII:738958-739340 ( 30) GTGCCTTAACCAACTGGGCCA 1 chrXII:734644-734979 ( 48) GTGCCTTAACCAACTGGGCCA 1 chrXVI:819342-819754 ( 38) GTGCCTTAACCAACTGGGCCA 1 chrIV:434067-434515 ( 68) GGCGCCTTACCAACTTGGCCA 1 chrXIV:104632-105051 ( 21) GGCGCCTTACCAACTTGGCCA 1 chrXV:113644-113971 ( 52) GGCGCCTTACCAACTTGGCCA 1 chrVIII:115949-116363 ( 46) GGCGCCTTACCAACTTGGCCA 1 chrXV:854042-854440 ( 41) AGCGCGCTACCAACTGCGCCA 1 chrVII:794256-794599 ( 47) AGCGCGCTACCAACTGCGCCA 1 chrV:311823-312268 ( 73) AGCGCGCTACCAACTGCGCCA 1 chrI:166086-166495 ( 34) AGCGCGCTACCAACTGCGCCA 1 chrIII:127546-127888 ( 56) ACGCCTTAACCAACTTGGCCA 1 chrXVI:810486-810856 ( 62) ACGCCTTAACCAACTTGGCCA 1 chrVI:137333-137725 ( 53) ACGCCTTAACCAACTTGGCCA 1 chrXV:487262-487628 ( 51) ACGCCTTAACCAACTTGGCCA 1 chrXIV:102537-102911 ( 49) ACGCCTTAACCAACTTGGCCA 1 chrVII:730959-731345 ( 42) ACGCCTTAACCAACTTGGCCA 1 chrXVI:856719-857090 ( 55) AGCGCGCTACCGACTACGCCA 1 chrX:197208-197308 ( 29) AGCGCGCTACCGACTACGCCA 1 chrXI:219715-220083 ( 53) AGCGCGCTACCGACTACGCCA 1 chrIV:410216-410583 ( 37) AGCGCGCTACCGACTACGCCA 1 chrXII:656823-657180 ( 28) AGCGCGCTACCGACTACGCCA 1 chrXII:731932-732291 ( 36) ACGCCTTAAACCACTCGGCCA 1 chrXV:274488-274911 ( 31) ATCGCCTTAACCACTCGGCCA 1 chrIII:227784-228164 ( 25) CTCGCCTTAACCACTCGGCCA 1 chrIV:980849-981222 ( 43) TTCGCCTTAACCACTCGGCCA 1 chrI:182420-182787 ( 23) TTCGCCTTAACCACTCGGCCA 1 chrXIII:259056-259410 ( 29) TTCGCCTTAACCACTCGGCCA 1 chrX:523896-523996 ( 34) TTCGCCTTAACCACTCGGCCA 1 chrV:86388-86840 ( 47) TTCGCCTTAACCACTCGGCCA 1 chrXII:962876-963229 ( 26) CCGCCTTAGACCACTCGGCCA 1 chrIV:519577-519924 ( 50) CCGCCTTAGACCACTCGGCCA 1 chrXIV:726019-726402 ( 30) CCGCCTTAGACCACTCGGCCA 1 chrXV:438478-438909 ( 7) AACGCTCTACCAACTGAGCTA 1 chrIV:359396-359806 ( 33) AACGCTCTACCAACTGAGCTA 1 chrXII:628211-628639 ( 15) GCGCCTTAGACCGCTCGGCCA 1 chrIV:1461584-1462011 ( 55) GCGCCTTAGACCGCTCGGCCA 1 chrXIII:504721-505133 ( 25) GCGCCTTAGACCGCTCGGCCA 1 chrVII:205353-205758 ( 23) GCGCCTTAGACCGCTCGGCCA 1 chrVII:857276-857650 ( 51) GCGCCTTAGACCGCTCGGCCA 1 chrVII:422908-423339 ( 26) GCGCCTTAGACCGCTCGGCCA 1 chrXIV:374714-375068 ( 35) GGCGCTCTCCCAACTGAGCTA 1 chrVII:440539-441001 ( 60) GGCGCTCTCCCAACTGAGCTA 1 chrXIII:352101-352485 ( 44) GGCGCTCTCCCAACTGAGCTA 1 chrII:36230-36579 ( 51) GGCGCTCTCCCAACTGAGCTA 1 chrXVI:622414-622813 ( 41) GGCGCTCTCCCAACTGAGCTA 1 chrVII:122117-122517 ( 9) TACGCGCTACCGATTGCGCCA 1 chrVI:226546-226927 ( 47) TACGCGCTACCGATTGCGCCA 1 chrV:135231-135668 ( 71) TACGCGCTACCGATTGCGCCA 1 chrIV:1201575-1201986 ( 27) TACGCGCTACCGATTGCGCCA 1 chrIV:1352340-1352713 ( 35) TACGCGCTACCGATTGCGCCA 1 chrVII:876225-876599 ( 39) TACGCGCTACCGATTGCGCCA 1 chrVII:73729-74101 ( 10) ATGCCATAACCGACTAGACCA 1 chrV:469286-469609 ( 67) ATGCCATAACCGACTAGACCA 1 chrXI:308039-308383 ( 29) ATGCCATAACCGACTAGACCA 1 chrVIII:85221-85538 ( 15) ATGCCATAACCGACTAGACCA 1 chrX:378177-378277 ( 49) ATGCCATAACCGACTAGACCA 1 chrXI:379505-379848 ( 61) ATGCCATAACCGACTAGACCA 1 chrXV:663672-664044 ( 50) ATGCCATAACCGACTAGACCA 1 chrXIII:372336-372691 ( 28) ATGCCATAACCGACTAGACCA 1 chrVII:823309-823691 ( 39) ATGCCATAACCGACTAGACCA 1 chrXII:374183-374590 ( 26) GACGCCGTGACCATTGGGCCA 1 chrXI:490805-491134 ( 56) GACGCCGTGACCATTGGGCCA 1 chrV:492211-492602 ( 41) GACGCCGTGACCATTGGGCCA 1 chrIV:884199-884615 ( 11) GAAGCTCTAACCACTGAGCTA 1 chrXII:605187-605588 ( 68) GAAGCTCTAACCACTGAGCTA 1 chrIV:946125-946584 ( 15) CGCCTTAAACCAACTTGGCTA 1 chrX:354073-354173 ( 33) CGCCTTAAACCAACTTGGCTA 1 chrVI:210506-210873 ( 41) CGCCTTAAACCAACTTGGCTA 1 chrXIII:168622-169081 ( 1) CGCCTTAAACCAACTTGGCTA 1 chrXV:976235-976703 ( 9) GACGCTCTTCCTACTGAGCTA 1 chrX:390918-391018 ( 26) GACGCTCTTCCTACTGAGCTA 1 chrXV:989081-989444 ( 35) ACACGCGAACCGGCTAGGCCA 1 chrX:538384-538484 ( 56) AGACGCGTTACCATTACGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNSSCTYWACCVACTNGGCCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 45440 bayes= 10.6738 E= 2.4e-222 39 -86 84 -106 -61 23 66 -20 -252 153 100 -1287 -1287 127 146 -1287 -1287 225 -286 -252 -135 14 5 61 -252 84 -154 80 57 -1287 -1287 84 126 -154 -28 -294 0 184 -1287 -1287 -1287 237 -1287 -1287 34 66 53 -352 157 -1287 -105 -1287 -1287 216 -1287 -120 -1287 -1287 -1287 171 -52 23 95 -71 -106 14 172 -1287 -135 -1287 218 -1287 -1287 237 -1287 -1287 -1287 205 -1287 -61 171 -1287 -1287 -1287 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNSSCTYWACCVACTNGGCCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 75 E= 2.4e-222 0.400000 0.106667 0.346667 0.146667 0.200000 0.226667 0.306667 0.266667 0.053333 0.560000 0.386667 0.000000 0.000000 0.466667 0.533333 0.000000 0.000000 0.920000 0.026667 0.053333 0.120000 0.213333 0.200000 0.466667 0.053333 0.346667 0.066667 0.533333 0.453333 0.000000 0.000000 0.546667 0.733333 0.066667 0.160000 0.040000 0.306667 0.693333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.386667 0.306667 0.280000 0.026667 0.906667 0.000000 0.093333 0.000000 0.000000 0.866667 0.000000 0.133333 0.000000 0.000000 0.000000 1.000000 0.213333 0.226667 0.373333 0.186667 0.146667 0.213333 0.640000 0.000000 0.120000 0.000000 0.880000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.200000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RNSSCTYWACCVACTNGGCCA MEME-1 regular expression -------------------------------------------------------------------------------- [AG][GTCA][CG][GC]C[TCG][TC][TA]A[CA]C[ACG]ACT[GCA][GC]GC[CT]A -------------------------------------------------------------------------------- Time 318.42 secs. ******************************************************************************** ******************************************************************************** MOTIF SMCTHNTAATCWGRAGRTCMBSGGTTCG MEME-2 width = 28 sites = 47 llr = 891 E-value = 1.1e-147 ******************************************************************************** -------------------------------------------------------------------------------- Motif SMCTHNTAATCWGRAGRTCMBSGGTTCG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 14:132199::4269:51:5:13::::2 pos.-specific C 336:323:11721::1::73341:::a: probability G 621:13:1:23164195::2356a:::8 matrix T 11393261:6:32::::93:4:::aa:: bits 2.4 * * 2.1 * * 1.9 * * 1.7 * **** Relative 1.4 * * * ***** Entropy 1.2 * * * ** ** ***** (27.4 bits) 0.9 * ** * ***** ***** 0.7 * ** **** ****** ******* 0.5 * ** **** ******* ******* 0.2 **** ***** **************** 0.0 ---------------------------- Multilevel GACTAGTAATCAGAAGGTCATGGGTTCG consensus CCT TTC GGT G A TCCCA sequence CA G C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SMCTHNTAATCWGRAGRTCMBSGGTTCG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------------- chrXIII:747772-748139 - 3 5.18e-13 CAACGCGTCT GACTTCTAATCAGAAGATTATGGGTTCG AC chrXI:162341-162726 - 20 5.18e-13 CAACGCGTCT GACTTCTAATCAGAAGATTATGGGTTCG ACCCCCATCG chrVII:405292-405717 + 44 5.18e-13 CAACGCGTCT GACTTCTAATCAGAAGATTATGGGTTCG ACCCCCATCG chrX:374292-374392 - 51 5.18e-13 CAACGCGTCT GACTTCTAATCAGAAGATTATGGGTTCG ACCCCCATCG chrIV:568714-569124 + 41 5.18e-13 CAACGCGTCT GACTTCTAATCAGAAGATTATGGGTTCG ACCCCCATCG chrVII:122117-122517 + 31 3.14e-12 TAGCGCGTAT GACTCTTAATCATAAGGTTAGGGGTTCG AGCCCCCTAC chrVI:226546-226927 - 18 3.14e-12 TAGCGCGTAT GACTCTTAATCATAAGGTTAGGGGTTCG AGCCCCCTAC chrV:135231-135668 - 42 3.14e-12 TAGCGCGTAT GACTCTTAATCATAAGGTTAGGGGTTCG AGCCCCCTAC chrIV:1201575-1201986 + 49 3.14e-12 TAGCGCGTAT GACTCTTAATCATAAGGTTAGGGGTTCG AGCCCCCTAC chrIV:1352340-1352713 - 6 3.14e-12 TAGCGCGTAT GACTCTTAATCATAAGGTTAGGGGTTCG AGCCC chrVII:876225-876599 + 61 3.14e-12 TAGCGCGTAT GACTCTTAATCATAAGGTTAGGGGTTCG AGCCCCCTAC chrXV:854042-854440 - 12 6.99e-12 TAGCGCGCTT CCCTTGCAAGGAAGAGGTCATCGGTTCG ATTCCGGTTG chrVII:794256-794599 + 69 6.99e-12 TAGCGCGCTT CCCTTGCAAGGAAGAGGTCATCGGTTCG ATTC chrV:311823-312268 - 44 6.99e-12 TAGCGCGCTT CCCTTGCAAGGAAGAGGTCATCGGTTCG ATTCCGGTTG chrI:166086-166495 + 56 6.99e-12 TAGCGCGCTT CCCTTGCAAGGAAGAGGTCATCGGTTCG ATTCCGGTTG chrIV:434067-434515 - 39 1.97e-11 TAAGGCGCCA CACTAGTAATGTGGAGATCATCGGTTCA AATCCGATTG chrXIV:104632-105051 + 43 1.97e-11 TAAGGCGCCA CACTAGTAATGTGGAGATCATCGGTTCA AATCCGATTG chrVIII:115949-116363 - 17 1.97e-11 TAAGGCGCCA CACTAGTAATGTGGAGATCATCGGTTCA AATCCGATTG chrXV:976235-976703 + 31 2.48e-10 AAGAGCGTCA GTCTCATAATCTGAAGGTCGAGAGTTCG AACCTCCCCT chrX:422763-422863 + 16 2.48e-10 AAGAGCGTCA GTCTCATAATCTGAAGGTCGAGAGTTCG AACCTCCCCT chrX:378177-378277 + 72 9.00e-10 TATGGCATCT GCTTAACACGCAGAACGTCCCCAGTTCG A chrXV:663672-664044 - 20 9.00e-10 TATGGCATCT GCTTAACACGCAGAACGTCCCCAGTTCG ATCCTGGGCG chrVII:823309-823691 + 62 9.00e-10 TATGGCATCT GCTTAACACGCAGAACGTCCCCAGTTCG ATCCTGGGCG chrVI:137333-137725 - 23 1.10e-09 TAAGGCGTGC GACTGTTAATCGCAAGATCGTGAGTTCA ACCCTCACTG chrXIV:102537-102911 + 72 1.10e-09 TAAGGCGTGC GACTGTTAATCGCAAGATCGTGAGTTCA A chrVII:730959-731345 + 65 1.10e-09 TAAGGCGTGC GACTGTTAATCGCAAGATCGTGAGTTCA ACCCTCAC chrIV:488534-489063 - 65 1.34e-09 AGACGTCG CCTTTACACGGCGAAGATCCCGAGTTCG AACCTCGGTT chrVII:738958-739340 + 53 1.97e-09 TAAGGCACCG TGCTAATAACGCGGGGATCAGCGGTTCG ATCCCGCTAG chrXII:734644-734979 + 71 1.97e-09 TAAGGCACCG TGCTAATAACGCGGGGATCAGCGGTTCG AT chrXVI:819342-819754 + 61 1.97e-09 TAAGGCACCG TGCTAATAACGCGGGGATCAGCGGTTCG ATCCCGCTAG chrIV:1075338-1075719 - 10 2.60e-09 TATCACGTTG CCTTCACACGGCAAAGGTCCCGAGTTCG ATCCTCGGT chrVII:440539-441001 - 12 4.85e-09 AAAAACTTCG GTCAAGTTATCTGGAGGTCCTGTGTTCG ATCCACAGAA chrXII:374183-374590 + 48 6.81e-09 CACGGCGTCT GGCTACGAACCAGAAGATTCCAGGTTCA AGTCCTGGCG chrV:492211-492602 - 12 6.81e-09 CACGGCGTCT GGCTACGAACCAGAAGATTCCAGGTTCA AGTCCTGGCG chrIV:1095167-1095621 - 42 1.40e-08 AAAAACTTTG GTCAAGATATCTGGAGGTCCTGTGTTCG ATCCACAGAG chrVII:774174-774640 + 21 1.63e-08 TAGCGCGCTC CCTTAGCATGGGAGAGGTCTCCGGTTCG ATTCCGGACT chrIV:410216-410583 + 59 1.63e-08 TAGCGCGCTC CCTTAGCATGGGAGAGGTCTCCGGTTCG ATTCCGGACT chrIV:946125-946584 + 53 2.04e-08 GTAATTTATC ACTACGAAATCTTGAGATCGGGCGTTCG ACTCGCCCCC chrX:354073-354173 + 71 2.04e-08 GTAATTTACC ACTACGAAATCTTGAGATCGGGCGTTCG AC chrXIII:168622-169081 + 39 2.04e-08 GTAATTTACC ACTACGAAATCTTGAGATCGGGCGTTCG ACTCGCCCCC chrII:350678-350993 + 70 2.73e-08 TTATCACTTT CGGTTTTGATCCGGACAACCCCGGTTCG AAT chrV:250112-250483 + 67 2.73e-08 TTATCACTTT CGGTTTTGATCCGGACAACCCCGGTTCG AATCCG chrXIII:808110-808495 - 10 5.08e-08 TTATCACTTT CGGTTCTGATCCGAACAACCCCAGTTCG AATCCGGGT chrXVI:435726-436144 - 24 1.02e-07 TAGCGCAGCA GATTGCAAATCTGTTGGTCCTTAGTTCG ATCCTGAGTG chrVII:706950-707353 - 23 1.02e-07 TAGCGCAGCA GATTGCAAATCTGTTGGTCCTTAGTTCG ATCCTGAGTG chrVII:287202-287626 - 2 3.80e-07 CCACGGAATA AGATTGCAATCGAAGGGTTGCAGGTTCA A chrXV:438478-438909 + 52 4.19e-07 ATTTGCTTAA GCAAGGATACCGAAATGTCAGGGGTTCG AGCCCCCTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SMCTHNTAATCWGRAGRTCMBSGGTTCG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:747772-748139 5.2e-13 2_[-2]_70 chrXI:162341-162726 5.2e-13 19_[-2]_53 chrVII:405292-405717 5.2e-13 43_[+2]_29 chrX:374292-374392 5.2e-13 50_[-2]_22 chrIV:568714-569124 5.2e-13 40_[+2]_32 chrVII:122117-122517 3.1e-12 30_[+2]_42 chrVI:226546-226927 3.1e-12 17_[-2]_55 chrV:135231-135668 3.1e-12 41_[-2]_31 chrIV:1201575-1201986 3.1e-12 48_[+2]_24 chrIV:1352340-1352713 3.1e-12 5_[-2]_67 chrVII:876225-876599 3.1e-12 60_[+2]_12 chrXV:854042-854440 7e-12 11_[-2]_61 chrVII:794256-794599 7e-12 68_[+2]_4 chrV:311823-312268 7e-12 43_[-2]_29 chrI:166086-166495 7e-12 55_[+2]_17 chrIV:434067-434515 2e-11 38_[-2]_34 chrXIV:104632-105051 2e-11 42_[+2]_30 chrVIII:115949-116363 2e-11 16_[-2]_56 chrXV:976235-976703 2.5e-10 30_[+2]_42 chrX:422763-422863 2.5e-10 15_[+2]_57 chrX:378177-378277 9e-10 71_[+2]_1 chrXV:663672-664044 9e-10 19_[-2]_53 chrVII:823309-823691 9e-10 61_[+2]_11 chrVI:137333-137725 1.1e-09 22_[-2]_50 chrXIV:102537-102911 1.1e-09 71_[+2]_1 chrVII:730959-731345 1.1e-09 64_[+2]_8 chrIV:488534-489063 1.3e-09 64_[-2]_8 chrVII:738958-739340 2e-09 52_[+2]_20 chrXII:734644-734979 2e-09 70_[+2]_2 chrXVI:819342-819754 2e-09 60_[+2]_12 chrIV:1075338-1075719 2.6e-09 9_[-2]_63 chrVII:440539-441001 4.9e-09 11_[-2]_61 chrXII:374183-374590 6.8e-09 47_[+2]_25 chrV:492211-492602 6.8e-09 11_[-2]_61 chrIV:1095167-1095621 1.4e-08 41_[-2]_31 chrVII:774174-774640 1.6e-08 20_[+2]_52 chrIV:410216-410583 1.6e-08 58_[+2]_14 chrIV:946125-946584 2e-08 52_[+2]_20 chrX:354073-354173 2e-08 70_[+2]_2 chrXIII:168622-169081 2e-08 38_[+2]_34 chrII:350678-350993 2.7e-08 69_[+2]_3 chrV:250112-250483 2.7e-08 66_[+2]_6 chrXIII:808110-808495 5.1e-08 9_[-2]_63 chrXVI:435726-436144 1e-07 23_[-2]_49 chrVII:706950-707353 1e-07 22_[-2]_50 chrVII:287202-287626 3.8e-07 1_[-2]_71 chrXV:438478-438909 4.2e-07 51_[+2]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SMCTHNTAATCWGRAGRTCMBSGGTTCG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SMCTHNTAATCWGRAGRTCMBSGGTTCG width=28 seqs=47 chrXIII:747772-748139 ( 3) GACTTCTAATCAGAAGATTATGGGTTCG 1 chrXI:162341-162726 ( 20) GACTTCTAATCAGAAGATTATGGGTTCG 1 chrVII:405292-405717 ( 44) GACTTCTAATCAGAAGATTATGGGTTCG 1 chrX:374292-374392 ( 51) GACTTCTAATCAGAAGATTATGGGTTCG 1 chrIV:568714-569124 ( 41) GACTTCTAATCAGAAGATTATGGGTTCG 1 chrVII:122117-122517 ( 31) GACTCTTAATCATAAGGTTAGGGGTTCG 1 chrVI:226546-226927 ( 18) GACTCTTAATCATAAGGTTAGGGGTTCG 1 chrV:135231-135668 ( 42) GACTCTTAATCATAAGGTTAGGGGTTCG 1 chrIV:1201575-1201986 ( 49) GACTCTTAATCATAAGGTTAGGGGTTCG 1 chrIV:1352340-1352713 ( 6) GACTCTTAATCATAAGGTTAGGGGTTCG 1 chrVII:876225-876599 ( 61) GACTCTTAATCATAAGGTTAGGGGTTCG 1 chrXV:854042-854440 ( 12) CCCTTGCAAGGAAGAGGTCATCGGTTCG 1 chrVII:794256-794599 ( 69) CCCTTGCAAGGAAGAGGTCATCGGTTCG 1 chrV:311823-312268 ( 44) CCCTTGCAAGGAAGAGGTCATCGGTTCG 1 chrI:166086-166495 ( 56) CCCTTGCAAGGAAGAGGTCATCGGTTCG 1 chrIV:434067-434515 ( 39) CACTAGTAATGTGGAGATCATCGGTTCA 1 chrXIV:104632-105051 ( 43) CACTAGTAATGTGGAGATCATCGGTTCA 1 chrVIII:115949-116363 ( 17) CACTAGTAATGTGGAGATCATCGGTTCA 1 chrXV:976235-976703 ( 31) GTCTCATAATCTGAAGGTCGAGAGTTCG 1 chrX:422763-422863 ( 16) GTCTCATAATCTGAAGGTCGAGAGTTCG 1 chrX:378177-378277 ( 72) GCTTAACACGCAGAACGTCCCCAGTTCG 1 chrXV:663672-664044 ( 20) GCTTAACACGCAGAACGTCCCCAGTTCG 1 chrVII:823309-823691 ( 62) GCTTAACACGCAGAACGTCCCCAGTTCG 1 chrVI:137333-137725 ( 23) GACTGTTAATCGCAAGATCGTGAGTTCA 1 chrXIV:102537-102911 ( 72) GACTGTTAATCGCAAGATCGTGAGTTCA 1 chrVII:730959-731345 ( 65) GACTGTTAATCGCAAGATCGTGAGTTCA 1 chrIV:488534-489063 ( 65) CCTTTACACGGCGAAGATCCCGAGTTCG 1 chrVII:738958-739340 ( 53) TGCTAATAACGCGGGGATCAGCGGTTCG 1 chrXII:734644-734979 ( 71) TGCTAATAACGCGGGGATCAGCGGTTCG 1 chrXVI:819342-819754 ( 61) TGCTAATAACGCGGGGATCAGCGGTTCG 1 chrIV:1075338-1075719 ( 10) CCTTCACACGGCAAAGGTCCCGAGTTCG 1 chrVII:440539-441001 ( 12) GTCAAGTTATCTGGAGGTCCTGTGTTCG 1 chrXII:374183-374590 ( 48) GGCTACGAACCAGAAGATTCCAGGTTCA 1 chrV:492211-492602 ( 12) GGCTACGAACCAGAAGATTCCAGGTTCA 1 chrIV:1095167-1095621 ( 42) GTCAAGATATCTGGAGGTCCTGTGTTCG 1 chrVII:774174-774640 ( 21) CCTTAGCATGGGAGAGGTCTCCGGTTCG 1 chrIV:410216-410583 ( 59) CCTTAGCATGGGAGAGGTCTCCGGTTCG 1 chrIV:946125-946584 ( 53) ACTACGAAATCTTGAGATCGGGCGTTCG 1 chrX:354073-354173 ( 71) ACTACGAAATCTTGAGATCGGGCGTTCG 1 chrXIII:168622-169081 ( 39) ACTACGAAATCTTGAGATCGGGCGTTCG 1 chrII:350678-350993 ( 70) CGGTTTTGATCCGGACAACCCCGGTTCG 1 chrV:250112-250483 ( 67) CGGTTTTGATCCGGACAACCCCGGTTCG 1 chrXIII:808110-808495 ( 10) CGGTTCTGATCCGAACAACCCCAGTTCG 1 chrXVI:435726-436144 ( 24) GATTGCAAATCTGTTGGTCCTTAGTTCG 1 chrVII:706950-707353 ( 23) GATTGCAAATCTGTTGGTCCTTAGTTCG 1 chrVII:287202-287626 ( 2) AGATTGCAATCGAAGGGTTGCAGGTTCA 1 chrXV:438478-438909 ( 52) GCAAGGATACCGAAATGTCAGGGGTTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SMCTHNTAATCWGRAGRTCMBSGGTTCG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 41464 bayes= 10.8663 E= 1.1e-147 -185 62 151 -226 40 72 -2 -185 -285 172 -160 -26 -126 -1220 -1220 151 6 40 -60 -4 -53 14 81 -39 -104 40 -219 85 151 -1220 -160 -226 147 -86 -1220 -285 -1220 -60 27 106 -1220 186 62 -1220 47 -19 -38 -26 -68 -160 151 -68 85 -1220 106 -285 151 -1220 -119 -285 -1220 -60 214 -384 68 -1220 140 -1220 -226 -1220 -1220 161 -1220 186 -1220 -4 61 62 -2 -285 -285 51 51 40 -226 98 140 -285 -15 -160 167 -285 -1220 -1220 237 -1220 -1220 -1220 -1220 171 -1220 -1220 -1220 171 -1220 237 -1220 -1220 -68 -1220 206 -1220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SMCTHNTAATCWGRAGRTCMBSGGTTCG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 47 E= 1.1e-147 0.085106 0.297872 0.553191 0.063830 0.404255 0.319149 0.191489 0.085106 0.042553 0.638298 0.063830 0.255319 0.127660 0.000000 0.000000 0.872340 0.319149 0.255319 0.127660 0.297872 0.212766 0.212766 0.340426 0.234043 0.148936 0.255319 0.042553 0.553191 0.872340 0.000000 0.063830 0.063830 0.851064 0.106383 0.000000 0.042553 0.000000 0.127660 0.234043 0.638298 0.000000 0.702128 0.297872 0.000000 0.425532 0.170213 0.148936 0.255319 0.191489 0.063830 0.553191 0.191489 0.553191 0.000000 0.404255 0.042553 0.872340 0.000000 0.085106 0.042553 0.000000 0.127660 0.851064 0.021277 0.489362 0.000000 0.510638 0.000000 0.063830 0.000000 0.000000 0.936170 0.000000 0.702128 0.000000 0.297872 0.468085 0.297872 0.191489 0.042553 0.042553 0.276596 0.276596 0.404255 0.063830 0.382979 0.510638 0.042553 0.276596 0.063830 0.617021 0.042553 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.191489 0.000000 0.808511 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SMCTHNTAATCWGRAGRTCMBSGGTTCG MEME-2 regular expression -------------------------------------------------------------------------------- [GC][AC][CT]T[ATC][GTAC][TC]AA[TG][CG][AT]G[AG]AG[GA]T[CT][AC][TCG][GC][GA]GTTCG -------------------------------------------------------------------------------- Time 607.58 secs. ******************************************************************************** ******************************************************************************** MOTIF RDRRTGTAYGGRTGTD MEME-3 width = 16 sites = 120 llr = 1331 E-value = 3.2e-137 ******************************************************************************** -------------------------------------------------------------------------------- Motif RDRRTGTAYGGRTGTD MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3436:::7:1:4:::4 pos.-specific C 11::::214:::1:2: probability G 43642a:2:9a6:913 matrix T 231:8:8:5:::9163 bits 2.4 2.1 * * 1.9 * * 1.7 * ** * Relative 1.4 * ** ** Entropy 1.2 ** ***** (16.0 bits) 0.9 *** ***** 0.7 ************ 0.5 ************* 0.2 * ************** 0.0 ---------------- Multilevel GAGATGTATGGGTGTA consensus AGAG CGC A CT sequence T G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDRRTGTAYGGRTGTD MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------- chrIV:221968-222312 + 43 3.61e-09 AAATGAGATA AGGGTGTACGGGTGTG GTAACCGTCG chrVIII:562252-562622 + 77 2.75e-08 AAGTGTGGGT GTGGTGTGTGGGTGTG GGTGTGTG chrXII:11049-11552 - 18 2.75e-08 GGGTGTGGGT GTGGTGTGTGGGTGTG GTGTGTGTGG chrXII:5447-5925 - 29 2.75e-08 TGGTGTGGGT GTGGTGTGTGGGTGTG GTGTATATAT chrIII:34-581 - 27 2.75e-08 GTGTGTGGGT GTGGTGTGTGGGTGTG GTGTGGGTGT chrVI:4466-4984 - 67 2.75e-08 TGGTGTGGGT GTGGTGTGTGGGTGTG GTGTGGGTGT chrXII:1064838-1065353 + 46 2.75e-08 GTGTGTGTGT GTGGTGTGTGGGTGTG GTGGGTGTGG chrVIII:382925-383305 + 34 3.47e-08 ATTTATTTTC ATGATGTATGGGTGTA TCGGATGTTC chrX:157453-157553 + 35 6.44e-08 ATGGATGTAT AAAGTGTACGGGTGTA AACACATTGT chrII:89654-89932 + 56 7.87e-08 GGTGTTAAAG AGGGTGTATGGATGTA AAGTCACAAA chrV:6165-6526 - 53 9.55e-08 GAAGGTGAGC ATGGTGTGTGGGTGTG GGTGTGGGTG chrXII:710588-710900 - 38 9.55e-08 AACGCAAAAT GAGATGCGTGGGTGTG ATTCCTGCTT chrI:81953-82263 + 50 9.55e-08 TCATCTAGCG GAGGTGCACGGATGTA CCAACAGTTT chrV:69068-69358 + 15 1.37e-07 GCGAAGCTTT GTGGGGTACGGGTGCA TGCTCGGCTT chrXII:650977-651285 - 58 1.62e-07 GCTACCATGA GAAATGTGTGGGTGTT GAGATAATTG chrXIII:145913-146280 - 37 1.62e-07 TGTATGGTGT ATGGTGTATGGATGTA CAAAAATGCT chrXI:431339-431667 - 40 1.62e-07 AGATGTAAAA ATAGTGTATGGGTGTA TTTGCGCTGT chrXVI:279884-280294 - 74 1.91e-07 TCGGAATTGT GAGGTGCACGGATGCG GACTTCTCCT chrX:160066-160166 - 56 1.91e-07 GTGCAACATT ATGGGGTATGGGTGTG TCACACATTT chrXII:932092-932496 + 29 2.23e-07 TACGGATGTA CGGATGTACGGATGTA TACTATGTAA chrIX:68216-68518 - 32 2.23e-07 ATACATCTTA GTAATGTACGGATGTA ATAAACTCAA chrIV:1355732-1355976 + 33 2.60e-07 AAAAATACTA TAAATGTATGGGTGTA ATTTTAACCG chrIV:1525226-1525661 + 48 3.01e-07 GGTGTGGTGT GGTGTGTGTGGGTGTG GTGTGGTGTG chrV:85098-85527 - 37 3.01e-07 GGAATACATC GAGGGGTATGGGTGGA TGATATCACT chrV:396223-396563 - 35 3.01e-07 TGGGTTCACA AAAGTGTACGGATGTA TACAACAGGG chrXIII:732047-732394 - 35 3.01e-07 CCACACATGC GCGATGTGCGGATGTA TTATGTCTTG chrVIII:125939-126294 - 35 3.47e-07 TGTAAAGATG TAGGTGTACGGATGCA TTAACGTCTT chrVIII:505827-506186 + 43 3.98e-07 ATGTCTGGGT GAAATGTATGGATGCA TAATTGTCTC chrII:415517-415857 + 44 3.98e-07 TCTGGATGAC AAAATGCATGGGTGTA AAAAAGGAAA chrXVI:794511-794800 - 49 4.54e-07 CGATAATATA AATATGTATGGGTGTT TGGAGATGTT chrXIII:224077-224341 + 29 4.54e-07 AAATTTCAAA AAAATGTATGGATGTA AAATTCAGTA chrXII:234626-234833 + 22 4.54e-07 ACGTTTTTAA GGAAGGTATGGGTGCA GTGTGCTTAT chrVII:149131-149497 + 52 4.54e-07 TATGTATGGG TGGGTGTATGGATGCT GTAAGCACAG chrIX:254237-254542 + 17 5.17e-07 CGCGGCAATT AGAATGTGTGGGTGCG GAAGCTCGCC chrXV:94496-94833 - 20 6.62e-07 ACCGAAGACA ATAATGCATGGGTGTT AATTCTATTT chrXI:108754-109092 - 47 7.46e-07 TGGAGCCAAC TAAATGTACGGATGTT GTAATGTGTT chrVII:371219-371494 - 48 7.46e-07 GCGGCGGTGT GAGGTGCATGGGTGCC GGTATTTTTT chrX:391843-391943 - 55 8.38e-07 CCCGCTCGCA GGGAGGTCTGGGTGTG GGGCGTGTGC chrVI:223906-224198 + 53 8.38e-07 TGGGTCTAAG AGTATGTACGGATGTA AAAGAAAACA chrXII:262811-263084 - 67 8.38e-07 CAAATTAACA TAAATGTATGGATGTA TTATTAAATG chrVII:555343-555683 - 46 8.38e-07 CCAAACACCT TTAATGCACGGGTGTA AAAGGGATGT chrXV:678831-679168 + 59 9.40e-07 ATGGGTCCAC AATATGTACGGATGTA TGGTCCCAAA chrIV:130588-130951 + 28 9.40e-07 AGAAAGCTAT AAAATGTGCGGATGTT TGTATATGTC chrIV:358106-358410 + 39 9.40e-07 TCCTTGTCAG ATAATGTATGGGTGGT GTGTACACCA chrX:75352-75452 + 66 1.05e-06 TTTTAAGTAT GTGATGTATGGGCGCA CAGTACCAAT chrXVI:731932-732294 - 40 1.05e-06 CCAACCATCC TAAAGGTATGGGTGTA CTGACGATGC chrII:60849-61235 + 79 1.05e-06 AAAGCAGTTG GGGGTGTACAGATGTT AATGTA chrVII:483320-483725 + 74 1.05e-06 GCAAAACAGA GTGATGTATGGGTGAT CCCAGCAATG chrXII:818833-819174 - 45 1.05e-06 TACAATAATC AATATGTACGGATGTT GGAAAGGTAT chrXII:921687-921967 + 61 1.31e-06 GCTACTACAG CGGGGGCACGGGTGCA TACATCTTCA chrXIV:6563-6884 - 5 1.31e-06 TTAGGGTTGT GATGGGTGTGGGTGTG GGTG chrXV:968063-968414 + 79 1.63e-06 TCAAAAGCGT GGGGTGCGTGGGCGTG CGCTGC chrXVI:76356-76714 + 56 1.63e-06 AACACATCCG TGGATGTACGGGTGAA AATACAGTCA chrXII:241647-241993 - 36 1.63e-06 GTTTACATTT TATATGTACGGATGTA AAAAGGGAAA chrXI:382176-382465 - 34 1.63e-06 TGTGTTGGGT GTGATGTCCGGATGCA ACAGCAGCAA chrXII:796439-796831 + 47 1.81e-06 GTTATTATCC AGGAGGCACGGATGCA AAAGATAGAA chrVIII:74977-75374 - 27 2.01e-06 ACGGATGTAG AAAATGTACAGGTGTG AACTTGCAGG chrIV:1300947-1301321 - 24 2.01e-06 CCAAACATCC ACAGTGCACGGATGTT TGAAGGAAAA chrVII:788328-788709 + 59 2.22e-06 TTGGGTTTAG AGTATGCACGGATGTT GTAAGGAATA chrIV:411270-411633 - 33 2.22e-06 CTTTGGGTGC CCGGGGTGTGGGTGTT TGATTTGTTT chrXV:216265-216673 - 39 2.22e-06 CCTGGGTTGA GGAAGGCGCGGGTGCT CGGATGTTCC chrXV:882191-882352 - 76 2.22e-06 TGGAAATAT GCGGTGCACAGGTGTT TTTATAGGGG chrVII:856716-857024 + 42 2.47e-06 TTCCATTGGT GCGGTGTATGGGCGGG TACCCTCAAA chrXV:1025789-1025994 - 34 2.47e-06 CCAATTACAC GTGATGAATGGGTGTT CAGCATATGT chrII:332341-332724 - 42 2.73e-06 TTTGGGTTTA GAATTGTATGGGTGCA GCAAGGAAAT chrXV:901446-901595 + 68 2.73e-06 TCGGAAACGT AAAATGTACGGGTGAA CAGTCCCGAA chrVII:277054-277386 - 56 3.03e-06 TCCCATAGAG CGGGTGTATGGGTCTA GCTTAAATAC chrXII:1012125-1012387 - 31 3.35e-06 ACATTTGCGT GTGGTGCATGGGTTCT ATTCCTCATT chrVII:534814-535207 + 42 3.35e-06 ATGGGTTACA CAAATGCACGGATGCA TATATAAAAT chrXV:866575-866943 + 45 3.71e-06 AAGCATTCTG GGTTTGTATGGGTGTT ACACCGGTTT chrXIII:754422-754775 + 22 3.71e-06 AACGCTATTC TGGATGTATGGGGGTA TTTTATGTTT chrV:491039-491441 - 29 3.71e-06 CTCCCGCAGG TGGGTGTGCGGGCGCT CAGCCTGCTA chrXII:805419-805829 - 48 3.71e-06 ATCAAAATGT GAAATGTTCGGATGTT AAGCAGGCAA chrXII:48736-49074 + 46 4.10e-06 AAGGGTGTCT AAGATGTACGGATCTT CATTGGGATG chrVII:1000297-1000570 - 74 4.10e-06 TCCAAATATG CAGGTGTTTGGGTGCT ATCCTAGTGG chrIV:217187-217493 - 23 4.10e-06 ATTATAGAAT AAAATGTACGGGTTCA AAGCAGGGCC chrXII:897720-898032 - 34 4.53e-06 ATGGGTTTTT TGGAGGTACAGGTGTT GTAGAATTCT chrIV:835763-836243 - 10 4.53e-06 ACTTTGAGCT GAGGTGTGCGGTTGCG GGGCGTGGG chrXIV:499343-499606 + 7 4.53e-06 ACTCAT GTGGTGCACTGGTGTT GTTTCCAAGA chrXV:161127-161406 + 28 4.53e-06 TATAGGAATC CCGATGTATGGGTTTG GTTGCCAGAA chrXII:645869-646099 - 11 4.53e-06 TTTCGCCCGA CGGGTGAATGGGTGTG GGTGGAACGA chrII:604133-604481 - 43 5.00e-06 GCGAATATGA AAAATGTACAGATGTG TAAATGTACG chrIV:117166-117554 - 59 5.00e-06 TATGGGTGTA GATATGTATGGGTCTG AGATTAATAC chrIV:1162456-1162866 - 48 5.00e-06 TCAAATAATA AGAATGTATGTGTGTG CAATTTGTTA chrIV:1401276-1401594 - 47 5.00e-06 AAAAGGGTAA TATATGTGTGGGTGGA AAATGATTGG chrV:53540-53902 + 62 5.51e-06 CCACACATAT TTGGTGTTCGGATGTT AAACAGGGTA chrIII:178320-178673 + 24 6.07e-06 AAAGAGTAGT AAAATGTACAGATGTT TATTAAGTCC chrVIII:296874-297215 - 62 6.07e-06 AGAGCATGCT GTGATGTACTGGTGGA CGAAATTGTG chrXIV:63132-63543 + 29 6.07e-06 GTGGGTTGCT AAAATGTTCGGATGTA AAGTAGTATT chrXI:618817-619178 + 62 6.07e-06 ACAAATCTAT TAGAGGCACGGATGGA AATAGTATTT chrXII:1028238-1028575 - 41 6.68e-06 CCCATACATT TTGGTGCATGGGTGAT ATTTTGTCTT chrXV:1004078-1004473 + 20 7.35e-06 CCGTATGTTA TGGGTGCAAGGGTGTT TTTTTTTTTT chrIX:316146-316577 - 40 7.35e-06 GGTTTGTAAA ATAATGTATGGGTTCT AGTCTGAAAA chrVII:648962-649346 + 43 8.86e-06 GTATGGGTTC TCGTTGTACGGATGTT TAAAATGTCC chrXII:498530-498880 - 17 9.71e-06 AATTCCTTAC AGGATGCACGGAGGTA AACAGGAAAG chrIX:257354-257713 - 49 1.06e-05 TCACAACTTT GCGGTGTACAGATGTC GTCACATACC chrV:23482-23953 - 29 1.06e-05 TATTAAATGA GAAATGTGGGGGTGGG GTATGCGTTT chrIX:99641-99995 + 40 1.16e-05 GTTTCATGAA TAAATGTACTGGTGTT ACATGGTGTA chrXVI:188613-188951 - 57 1.16e-05 ACCATAGTAA CCGATGCATGGGTTTT AAAAGTCACG chrXV:505120-505487 - 65 1.16e-05 AATACCATAT CATATGTTTGGGTGTG ATAAGGTTCA chrVIII:175040-175445 - 49 1.27e-05 AAGACTGGGT GTGATGCGGGGGTGGG GGTGTGCATC chrX:651269-651369 - 38 1.39e-05 AGAATAATTA TGGGTATATGGGTGTT GTTGTATAAA chrXVI:520191-520525 - 55 1.39e-05 TTTTCCTCCG GCGAGGCCTGGGTGGA ACACTCAGGC chrXII:370457-371050 + 81 1.39e-05 GACTAACCGT GTGGTTCATGGGTGGG CGAA chrIV:579070-579381 - 30 1.39e-05 GGTCTACTTT ATGGTTTATGGGTGGT AAAAGGCTTA chrXIV:495216-495580 + 45 1.94e-05 TTGGGTGTGT ATAGTGTACGGATTGA ATATGTCAAG chrX:90085-90185 - 42 2.11e-05 TGTATGGGTG AGAATGTCCAGGTGCA AATTGAAAAG chrXI:666426-666720 + 79 2.47e-05 AGGGTAGTGT TAGGGTTGTGGGTGTG TGGGTG chrI:229271-229450 - 48 2.89e-05 TTTATAACGC AGTATGTACAGGTGCC ATACGTACAG chrII:167899-168203 - 33 3.91e-05 ACTGGTGAAA AATATGTCTGGGTTTT AAAACACTGT chrVII:310522-310973 - 3 3.91e-05 TTTGATTTTG GTAATGTGTGGGTCCC TG chrIV:525535-525945 - 18 4.21e-05 GTGAAACTTG TGTGGGTATGGATTTG GTTCGTGAGT chrXV:908785-909195 - 64 4.53e-05 CTCCTGATAT GCGATGGGTGGGTGCC CCTGTGTCAT chrV:354755-355298 + 47 4.87e-05 TTGACATCAT ACAGTGTATGTATGGG GTTAGGAGCC chrIX:131867-132054 - 51 6.49e-05 AGATTTGGGG GGGAGGTCAGGATGCT GAAAAATTAT chrVIII:291996-292406 - 48 6.49e-05 CAAGCTAGGT GATATGTATGGTCGTA GAATCGGTTT chrXIII:296782-298843 - 48 7.47e-05 TACAATGGAT CAGTTGCGCGGGTTTT CTAGGCCCGC chrXII:899346-899591 + 60 7.47e-05 TGTACTTAGT CCGAGGTATGTATGCT AAGATTAGAG chrXIII:915087-915497 - 34 8.00e-05 TGCATGTACG AAGGTGTACGTACGGT CATTCGCATT chrXIV:575285-575690 - 71 1.66e-04 AACGACATGA GGAGGGTATATATGCT GTAATTTATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDRRTGTAYGGRTGTD MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:221968-222312 3.6e-09 42_[+3]_42 chrVIII:562252-562622 2.8e-08 76_[+3]_8 chrXII:11049-11552 2.8e-08 17_[-3]_67 chrXII:5447-5925 2.8e-08 28_[-3]_56 chrIII:34-581 2.8e-08 26_[-3]_58 chrVI:4466-4984 2.8e-08 66_[-3]_18 chrXII:1064838-1065353 2.8e-08 45_[+3]_39 chrVIII:382925-383305 3.5e-08 33_[+3]_51 chrX:157453-157553 6.4e-08 34_[+3]_50 chrII:89654-89932 7.9e-08 55_[+3]_29 chrV:6165-6526 9.6e-08 52_[-3]_32 chrXII:710588-710900 9.6e-08 37_[-3]_47 chrI:81953-82263 9.6e-08 49_[+3]_35 chrV:69068-69358 1.4e-07 14_[+3]_70 chrXII:650977-651285 1.6e-07 57_[-3]_27 chrXIII:145913-146280 1.6e-07 36_[-3]_48 chrXI:431339-431667 1.6e-07 39_[-3]_45 chrXVI:279884-280294 1.9e-07 73_[-3]_11 chrX:160066-160166 1.9e-07 55_[-3]_29 chrXII:932092-932496 2.2e-07 28_[+3]_56 chrIX:68216-68518 2.2e-07 31_[-3]_53 chrIV:1355732-1355976 2.6e-07 32_[+3]_52 chrIV:1525226-1525661 3e-07 47_[+3]_37 chrV:85098-85527 3e-07 36_[-3]_48 chrV:396223-396563 3e-07 34_[-3]_50 chrXIII:732047-732394 3e-07 34_[-3]_50 chrVIII:125939-126294 3.5e-07 34_[-3]_50 chrVIII:505827-506186 4e-07 42_[+3]_42 chrII:415517-415857 4e-07 43_[+3]_41 chrXVI:794511-794800 4.5e-07 48_[-3]_36 chrXIII:224077-224341 4.5e-07 28_[+3]_56 chrXII:234626-234833 4.5e-07 21_[+3]_63 chrVII:149131-149497 4.5e-07 51_[+3]_33 chrIX:254237-254542 5.2e-07 16_[+3]_68 chrXV:94496-94833 6.6e-07 19_[-3]_65 chrXI:108754-109092 7.5e-07 46_[-3]_38 chrVII:371219-371494 7.5e-07 47_[-3]_37 chrX:391843-391943 8.4e-07 54_[-3]_30 chrVI:223906-224198 8.4e-07 52_[+3]_32 chrXII:262811-263084 8.4e-07 66_[-3]_18 chrVII:555343-555683 8.4e-07 45_[-3]_39 chrXV:678831-679168 9.4e-07 58_[+3]_26 chrIV:130588-130951 9.4e-07 27_[+3]_57 chrIV:358106-358410 9.4e-07 38_[+3]_46 chrX:75352-75452 1.1e-06 65_[+3]_19 chrXVI:731932-732294 1.1e-06 39_[-3]_45 chrII:60849-61235 1.1e-06 78_[+3]_6 chrVII:483320-483725 1.1e-06 73_[+3]_11 chrXII:818833-819174 1.1e-06 44_[-3]_40 chrXII:921687-921967 1.3e-06 60_[+3]_24 chrXIV:6563-6884 1.3e-06 4_[-3]_80 chrXV:968063-968414 1.6e-06 78_[+3]_6 chrXVI:76356-76714 1.6e-06 55_[+3]_29 chrXII:241647-241993 1.6e-06 35_[-3]_49 chrXI:382176-382465 1.6e-06 33_[-3]_51 chrXII:796439-796831 1.8e-06 46_[+3]_38 chrVIII:74977-75374 2e-06 26_[-3]_58 chrIV:1300947-1301321 2e-06 23_[-3]_61 chrVII:788328-788709 2.2e-06 58_[+3]_26 chrIV:411270-411633 2.2e-06 32_[-3]_52 chrXV:216265-216673 2.2e-06 38_[-3]_46 chrXV:882191-882352 2.2e-06 75_[-3]_9 chrVII:856716-857024 2.5e-06 41_[+3]_43 chrXV:1025789-1025994 2.5e-06 33_[-3]_51 chrII:332341-332724 2.7e-06 41_[-3]_43 chrXV:901446-901595 2.7e-06 67_[+3]_17 chrVII:277054-277386 3e-06 55_[-3]_29 chrXII:1012125-1012387 3.4e-06 30_[-3]_54 chrVII:534814-535207 3.4e-06 41_[+3]_43 chrXV:866575-866943 3.7e-06 44_[+3]_40 chrXIII:754422-754775 3.7e-06 21_[+3]_63 chrV:491039-491441 3.7e-06 28_[-3]_56 chrXII:805419-805829 3.7e-06 47_[-3]_37 chrXII:48736-49074 4.1e-06 45_[+3]_39 chrVII:1000297-1000570 4.1e-06 73_[-3]_11 chrIV:217187-217493 4.1e-06 22_[-3]_62 chrXII:897720-898032 4.5e-06 33_[-3]_51 chrIV:835763-836243 4.5e-06 9_[-3]_75 chrXIV:499343-499606 4.5e-06 6_[+3]_78 chrXV:161127-161406 4.5e-06 27_[+3]_57 chrXII:645869-646099 4.5e-06 10_[-3]_74 chrII:604133-604481 5e-06 42_[-3]_42 chrIV:117166-117554 5e-06 58_[-3]_26 chrIV:1162456-1162866 5e-06 47_[-3]_37 chrIV:1401276-1401594 5e-06 46_[-3]_38 chrV:53540-53902 5.5e-06 61_[+3]_23 chrIII:178320-178673 6.1e-06 23_[+3]_61 chrVIII:296874-297215 6.1e-06 61_[-3]_23 chrXIV:63132-63543 6.1e-06 28_[+3]_56 chrXI:618817-619178 6.1e-06 61_[+3]_23 chrXII:1028238-1028575 6.7e-06 40_[-3]_44 chrXV:1004078-1004473 7.4e-06 19_[+3]_65 chrIX:316146-316577 7.4e-06 39_[-3]_45 chrVII:648962-649346 8.9e-06 42_[+3]_42 chrXII:498530-498880 9.7e-06 16_[-3]_68 chrIX:257354-257713 1.1e-05 48_[-3]_36 chrV:23482-23953 1.1e-05 28_[-3]_56 chrIX:99641-99995 1.2e-05 39_[+3]_45 chrXVI:188613-188951 1.2e-05 56_[-3]_28 chrXV:505120-505487 1.2e-05 64_[-3]_20 chrVIII:175040-175445 1.3e-05 48_[-3]_36 chrX:651269-651369 1.4e-05 37_[-3]_47 chrXVI:520191-520525 1.4e-05 54_[-3]_30 chrXII:370457-371050 1.4e-05 80_[+3]_4 chrIV:579070-579381 1.4e-05 29_[-3]_55 chrXIV:495216-495580 1.9e-05 44_[+3]_40 chrX:90085-90185 2.1e-05 41_[-3]_43 chrXI:666426-666720 2.5e-05 78_[+3]_6 chrI:229271-229450 2.9e-05 47_[-3]_37 chrII:167899-168203 3.9e-05 32_[-3]_52 chrVII:310522-310973 3.9e-05 2_[-3]_82 chrIV:525535-525945 4.2e-05 17_[-3]_67 chrXV:908785-909195 4.5e-05 63_[-3]_21 chrV:354755-355298 4.9e-05 46_[+3]_38 chrIX:131867-132054 6.5e-05 50_[-3]_34 chrVIII:291996-292406 6.5e-05 47_[-3]_37 chrXIII:296782-298843 7.5e-05 47_[-3]_37 chrXII:899346-899591 7.5e-05 59_[+3]_25 chrXIII:915087-915497 8e-05 33_[-3]_51 chrXIV:575285-575690 0.00017 70_[-3]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDRRTGTAYGGRTGTD MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RDRRTGTAYGGRTGTD width=16 seqs=120 chrIV:221968-222312 ( 43) AGGGTGTACGGGTGTG 1 chrVIII:562252-562622 ( 77) GTGGTGTGTGGGTGTG 1 chrXII:11049-11552 ( 18) GTGGTGTGTGGGTGTG 1 chrXII:5447-5925 ( 29) GTGGTGTGTGGGTGTG 1 chrIII:34-581 ( 27) GTGGTGTGTGGGTGTG 1 chrVI:4466-4984 ( 67) GTGGTGTGTGGGTGTG 1 chrXII:1064838-1065353 ( 46) GTGGTGTGTGGGTGTG 1 chrVIII:382925-383305 ( 34) ATGATGTATGGGTGTA 1 chrX:157453-157553 ( 35) AAAGTGTACGGGTGTA 1 chrII:89654-89932 ( 56) AGGGTGTATGGATGTA 1 chrV:6165-6526 ( 53) ATGGTGTGTGGGTGTG 1 chrXII:710588-710900 ( 38) GAGATGCGTGGGTGTG 1 chrI:81953-82263 ( 50) GAGGTGCACGGATGTA 1 chrV:69068-69358 ( 15) GTGGGGTACGGGTGCA 1 chrXII:650977-651285 ( 58) GAAATGTGTGGGTGTT 1 chrXIII:145913-146280 ( 37) ATGGTGTATGGATGTA 1 chrXI:431339-431667 ( 40) ATAGTGTATGGGTGTA 1 chrXVI:279884-280294 ( 74) GAGGTGCACGGATGCG 1 chrX:160066-160166 ( 56) ATGGGGTATGGGTGTG 1 chrXII:932092-932496 ( 29) CGGATGTACGGATGTA 1 chrIX:68216-68518 ( 32) GTAATGTACGGATGTA 1 chrIV:1355732-1355976 ( 33) TAAATGTATGGGTGTA 1 chrIV:1525226-1525661 ( 48) GGTGTGTGTGGGTGTG 1 chrV:85098-85527 ( 37) GAGGGGTATGGGTGGA 1 chrV:396223-396563 ( 35) AAAGTGTACGGATGTA 1 chrXIII:732047-732394 ( 35) GCGATGTGCGGATGTA 1 chrVIII:125939-126294 ( 35) TAGGTGTACGGATGCA 1 chrVIII:505827-506186 ( 43) GAAATGTATGGATGCA 1 chrII:415517-415857 ( 44) AAAATGCATGGGTGTA 1 chrXVI:794511-794800 ( 49) AATATGTATGGGTGTT 1 chrXIII:224077-224341 ( 29) AAAATGTATGGATGTA 1 chrXII:234626-234833 ( 22) GGAAGGTATGGGTGCA 1 chrVII:149131-149497 ( 52) TGGGTGTATGGATGCT 1 chrIX:254237-254542 ( 17) AGAATGTGTGGGTGCG 1 chrXV:94496-94833 ( 20) ATAATGCATGGGTGTT 1 chrXI:108754-109092 ( 47) TAAATGTACGGATGTT 1 chrVII:371219-371494 ( 48) GAGGTGCATGGGTGCC 1 chrX:391843-391943 ( 55) GGGAGGTCTGGGTGTG 1 chrVI:223906-224198 ( 53) AGTATGTACGGATGTA 1 chrXII:262811-263084 ( 67) TAAATGTATGGATGTA 1 chrVII:555343-555683 ( 46) TTAATGCACGGGTGTA 1 chrXV:678831-679168 ( 59) AATATGTACGGATGTA 1 chrIV:130588-130951 ( 28) AAAATGTGCGGATGTT 1 chrIV:358106-358410 ( 39) ATAATGTATGGGTGGT 1 chrX:75352-75452 ( 66) GTGATGTATGGGCGCA 1 chrXVI:731932-732294 ( 40) TAAAGGTATGGGTGTA 1 chrII:60849-61235 ( 79) GGGGTGTACAGATGTT 1 chrVII:483320-483725 ( 74) GTGATGTATGGGTGAT 1 chrXII:818833-819174 ( 45) AATATGTACGGATGTT 1 chrXII:921687-921967 ( 61) CGGGGGCACGGGTGCA 1 chrXIV:6563-6884 ( 5) GATGGGTGTGGGTGTG 1 chrXV:968063-968414 ( 79) GGGGTGCGTGGGCGTG 1 chrXVI:76356-76714 ( 56) TGGATGTACGGGTGAA 1 chrXII:241647-241993 ( 36) TATATGTACGGATGTA 1 chrXI:382176-382465 ( 34) GTGATGTCCGGATGCA 1 chrXII:796439-796831 ( 47) AGGAGGCACGGATGCA 1 chrVIII:74977-75374 ( 27) AAAATGTACAGGTGTG 1 chrIV:1300947-1301321 ( 24) ACAGTGCACGGATGTT 1 chrVII:788328-788709 ( 59) AGTATGCACGGATGTT 1 chrIV:411270-411633 ( 33) CCGGGGTGTGGGTGTT 1 chrXV:216265-216673 ( 39) GGAAGGCGCGGGTGCT 1 chrXV:882191-882352 ( 76) GCGGTGCACAGGTGTT 1 chrVII:856716-857024 ( 42) GCGGTGTATGGGCGGG 1 chrXV:1025789-1025994 ( 34) GTGATGAATGGGTGTT 1 chrII:332341-332724 ( 42) GAATTGTATGGGTGCA 1 chrXV:901446-901595 ( 68) AAAATGTACGGGTGAA 1 chrVII:277054-277386 ( 56) CGGGTGTATGGGTCTA 1 chrXII:1012125-1012387 ( 31) GTGGTGCATGGGTTCT 1 chrVII:534814-535207 ( 42) CAAATGCACGGATGCA 1 chrXV:866575-866943 ( 45) GGTTTGTATGGGTGTT 1 chrXIII:754422-754775 ( 22) TGGATGTATGGGGGTA 1 chrV:491039-491441 ( 29) TGGGTGTGCGGGCGCT 1 chrXII:805419-805829 ( 48) GAAATGTTCGGATGTT 1 chrXII:48736-49074 ( 46) AAGATGTACGGATCTT 1 chrVII:1000297-1000570 ( 74) CAGGTGTTTGGGTGCT 1 chrIV:217187-217493 ( 23) AAAATGTACGGGTTCA 1 chrXII:897720-898032 ( 34) TGGAGGTACAGGTGTT 1 chrIV:835763-836243 ( 10) GAGGTGTGCGGTTGCG 1 chrXIV:499343-499606 ( 7) GTGGTGCACTGGTGTT 1 chrXV:161127-161406 ( 28) CCGATGTATGGGTTTG 1 chrXII:645869-646099 ( 11) CGGGTGAATGGGTGTG 1 chrII:604133-604481 ( 43) AAAATGTACAGATGTG 1 chrIV:117166-117554 ( 59) GATATGTATGGGTCTG 1 chrIV:1162456-1162866 ( 48) AGAATGTATGTGTGTG 1 chrIV:1401276-1401594 ( 47) TATATGTGTGGGTGGA 1 chrV:53540-53902 ( 62) TTGGTGTTCGGATGTT 1 chrIII:178320-178673 ( 24) AAAATGTACAGATGTT 1 chrVIII:296874-297215 ( 62) GTGATGTACTGGTGGA 1 chrXIV:63132-63543 ( 29) AAAATGTTCGGATGTA 1 chrXI:618817-619178 ( 62) TAGAGGCACGGATGGA 1 chrXII:1028238-1028575 ( 41) TTGGTGCATGGGTGAT 1 chrXV:1004078-1004473 ( 20) TGGGTGCAAGGGTGTT 1 chrIX:316146-316577 ( 40) ATAATGTATGGGTTCT 1 chrVII:648962-649346 ( 43) TCGTTGTACGGATGTT 1 chrXII:498530-498880 ( 17) AGGATGCACGGAGGTA 1 chrIX:257354-257713 ( 49) GCGGTGTACAGATGTC 1 chrV:23482-23953 ( 29) GAAATGTGGGGGTGGG 1 chrIX:99641-99995 ( 40) TAAATGTACTGGTGTT 1 chrXVI:188613-188951 ( 57) CCGATGCATGGGTTTT 1 chrXV:505120-505487 ( 65) CATATGTTTGGGTGTG 1 chrVIII:175040-175445 ( 49) GTGATGCGGGGGTGGG 1 chrX:651269-651369 ( 38) TGGGTATATGGGTGTT 1 chrXVI:520191-520525 ( 55) GCGAGGCCTGGGTGGA 1 chrXII:370457-371050 ( 81) GTGGTTCATGGGTGGG 1 chrIV:579070-579381 ( 30) ATGGTTTATGGGTGGT 1 chrXIV:495216-495580 ( 45) ATAGTGTACGGATTGA 1 chrX:90085-90185 ( 42) AGAATGTCCAGGTGCA 1 chrXI:666426-666720 ( 79) TAGGGTTGTGGGTGTG 1 chrI:229271-229450 ( 48) AGTATGTACAGGTGCC 1 chrII:167899-168203 ( 33) AATATGTCTGGGTTTT 1 chrVII:310522-310973 ( 3) GTAATGTGTGGGTCCC 1 chrIV:525535-525945 ( 18) TGTGGGTATGGATTTG 1 chrXV:908785-909195 ( 64) GCGATGGGTGGGTGCC 1 chrV:354755-355298 ( 47) ACAGTGTATGTATGGG 1 chrIX:131867-132054 ( 51) GGGAGGTCAGGATGCT 1 chrVIII:291996-292406 ( 48) GATATGTATGGTCGTA 1 chrXIII:296782-298843 ( 48) CAGTTGCGCGGGTTTT 1 chrXII:899346-899591 ( 60) CCGAGGTATGTATGCT 1 chrXIII:915087-915497 ( 34) AAGGTGTACGTACGGT 1 chrXIV:575285-575690 ( 71) GGAGGGTATATATGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDRRTGTAYGGRTGTD MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 16 n= 48280 bayes= 9.32423 E= 3.2e-137 9 -95 102 -74 29 -84 42 -25 5 -1355 151 -120 84 -1355 111 -320 -1355 -1355 -29 146 -520 -1355 232 -361 -420 16 -454 131 118 -195 16 -288 -420 113 -354 82 -188 -1355 220 -361 -1355 -1355 231 -288 19 -1355 171 -420 -1355 -195 -354 161 -1355 -254 220 -203 -320 27 -73 101 26 -222 42 12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDRRTGTAYGGRTGTD MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 16 nsites= 120 E= 3.2e-137 0.325000 0.100000 0.391667 0.183333 0.375000 0.108333 0.258333 0.258333 0.316667 0.000000 0.550000 0.133333 0.550000 0.000000 0.416667 0.033333 0.000000 0.000000 0.158333 0.841667 0.008333 0.000000 0.966667 0.025000 0.016667 0.216667 0.008333 0.758333 0.691667 0.050000 0.216667 0.041667 0.016667 0.425000 0.016667 0.541667 0.083333 0.000000 0.891667 0.025000 0.000000 0.000000 0.958333 0.041667 0.350000 0.000000 0.633333 0.016667 0.000000 0.050000 0.016667 0.933333 0.000000 0.033333 0.891667 0.075000 0.033333 0.233333 0.116667 0.616667 0.366667 0.041667 0.258333 0.333333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RDRRTGTAYGGRTGTD MEME-3 regular expression -------------------------------------------------------------------------------- [GA][AGT][GA][AG]TG[TC][AG][TC]GG[GA]TG[TC][ATG] -------------------------------------------------------------------------------- Time 893.59 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXI:618817-619178 1.85e-03 34_[-3(2.11e-05)]_11_[+3(6.07e-06)]_\ 23 chrIV:1156317-1156641 7.48e-01 100 chrIV:929137-929547 6.19e-01 100 chrXIII:290637-290972 3.07e-01 100 chrX:160066-160166 5.14e-04 55_[-3(1.91e-07)]_29 chrXII:1064838-1065353 6.05e-05 4_[+3(2.75e-08)]_25_[+3(2.75e-08)]_\ 10_[+3(3.71e-06)]_13 chrXIII:540310-540771 2.78e-01 100 chrVIII:105541-105951 2.72e-01 100 chrVII:344291-344843 5.66e-01 100 chrIV:358106-358410 4.69e-04 38_[+3(9.40e-07)]_46 chrXVI:819342-819754 7.54e-13 37_[-1(3.83e-11)]_2_[+2(1.97e-09)]_\ 12 chrXI:302744-303167 4.68e-01 100 chrVII:277054-277386 8.16e-03 55_[-3(3.03e-06)]_29 chrVIII:381640-382105 2.34e-01 100 chrIV:1401276-1401594 1.62e-02 46_[-3(5.00e-06)]_38 chrIII:228893-229066 9.93e-01 100 chrVII:706950-707353 5.26e-05 22_[-2(1.02e-07)]_50 chrXII:805419-805829 3.67e-04 47_[-3(3.71e-06)]_37 chrI:166086-166495 5.61e-15 33_[-1(1.16e-10)]_1_[+2(6.99e-12)]_\ 17 chrXII:499027-499665 1.43e-01 100 chrVII:823309-823691 1.19e-10 38_[-1(2.83e-08)]_2_[+2(9.00e-10)]_\ 11 chrVII:149131-149497 9.55e-04 51_[+3(4.54e-07)]_33 chrVII:480643-482875 5.77e-01 100 chrXVI:745786-746196 3.42e-01 100 chrXII:796439-796831 3.65e-03 46_[+3(1.81e-06)]_38 chrV:167194-167604 9.99e-01 100 chrVII:787082-787257 9.98e-01 100 chrVII:366097-366495 2.65e-01 100 chrIV:1162456-1162866 5.98e-03 47_[-3(5.00e-06)]_37 chrXII:930916-931043 6.36e-01 100 chrI:138988-139370 1.69e-01 100 chrXII:261228-261638 3.63e-01 100 chrXV:505120-505487 1.34e-02 39_[-3(7.35e-06)]_9_[-3(1.16e-05)]_\ 20 chrVIII:115949-116363 6.50e-15 16_[-2(1.97e-11)]_1_[+1(6.09e-11)]_\ 34 chrXV:621491-622043 1.27e-01 100 chrXVI:622414-622813 1.57e-05 40_[+1(2.13e-08)]_39 chrIV:1239877-1239994 9.96e-01 100 chrIX:68216-68518 7.89e-04 31_[-3(2.23e-07)]_1_[+3(3.91e-05)]_\ 36 chrIV:118452-118646 6.67e-01 100 chrIII:82395-82707 6.01e-01 100 chrVIII:521941-522197 6.91e-02 100 chrV:61138-62129 8.59e-01 100 chrXVI:114416-114765 8.78e-01 100 chrXIII:162180-162311 5.29e-01 100 chrIV:591690-592100 3.25e-01 100 chrII:680899-681929 1.95e-01 100 chrX:451067-451167 6.54e-01 100 chrIV:76822-77155 1.81e-01 100 chrV:306647-307057 7.17e-01 100 chrVII:365156-365361 7.48e-02 [-1(7.87e-05)]_79 chrIV:520792-521149 6.14e-04 58_[-1(7.25e-06)]_21 chrXIV:716013-716550 7.66e-01 100 chrXIV:24714-24864 6.02e-01 100 chrXI:431339-431667 6.70e-04 39_[-3(1.62e-07)]_45 chrVII:479220-480742 7.06e-01 100 chrV:152741-153016 9.97e-01 100 chrXIII:372336-372691 2.72e-05 27_[+1(2.83e-08)]_52 chrXVI:718450-719207 7.65e-01 100 chrVII:876225-876599 1.92e-13 38_[-1(2.35e-08)]_1_[+2(3.14e-12)]_\ 12 chrV:51960-52173 9.70e-01 100 chrX:139191-139291 6.21e-01 100 chrIX:129978-130161 5.38e-01 100 chrXV:161750-161979 5.79e-02 100 chrV:250112-250483 9.22e-08 45_[-1(7.25e-06)]_[+2(2.73e-08)]_6 chrXII:366078-366450 5.87e-01 100 chrVII:779458-779819 2.39e-03 34_[-1(5.58e-05)]_45 chrXVI:282414-282824 5.27e-02 100 chrVII:799776-800186 7.16e-01 100 chrXII:899346-899591 2.17e-02 59_[+3(7.47e-05)]_25 chrXI:140880-141253 1.93e-01 100 chrXV:1025789-1025994 4.18e-04 33_[-3(2.47e-06)]_51 chrXI:326256-327328 3.42e-01 100 chrVIII:35338-35731 7.34e-01 100 chrV:53540-53902 5.53e-03 46_[-3(5.00e-06)]_38 chrV:99951-100311 1.46e-01 100 chrXVI:587377-587495 7.64e-01 100 chrXII:498530-498880 2.19e-02 16_[-3(9.71e-06)]_68 chrVIII:125939-126294 2.06e-03 34_[-3(3.47e-07)]_50 chrXII:728209-728580 4.09e-02 27_[-3(6.05e-05)]_57 chrXV:93633-94086 7.50e-01 100 chrVII:422908-423339 5.46e-05 25_[-1(1.44e-08)]_54 chrV:467811-468221 2.03e-02 100 chrVII:857276-857650 7.05e-05 50_[+1(1.44e-08)]_29 chrX:227772-227872 4.07e-01 100 chrIV:1265496-1265906 9.42e-01 100 chrX:90085-90185 3.23e-02 41_[-3(2.11e-05)]_43 chrIV:339032-339442 7.84e-01 100 chrXVI:678849-679330 3.48e-01 100 chrXV:663672-664044 1.19e-10 19_[-2(9.00e-10)]_2_[+1(2.83e-08)]_\ 30 chrXII:645869-646099 5.27e-03 10_[-3(4.53e-06)]_74 chrI:142283-142439 4.02e-01 100 chrXV:779706-780966 3.04e-01 100 chrXIII:289568-289978 6.27e-01 100 chrIV:1352340-1352713 1.92e-13 5_[-2(3.14e-12)]_1_[+1(2.35e-08)]_\ 45 chrXV:444848-446134 1.04e-01 100 chrXV:93633-94078 7.50e-01 100 chrV:424111-424521 9.50e-01 100 chrIV:217187-217493 8.45e-03 22_[-3(4.10e-06)]_62 chrIV:1095167-1095621 4.19e-06 41_[-2(1.40e-08)]_31 chrXVI:280749-281643 8.30e-02 100 chrXIII:220560-220970 6.43e-01 100 chrXI:558828-558961 7.92e-02 100 chrVII:609472-610142 6.50e-01 100 chrXIII:287480-287798 4.79e-01 100 chrVII:799984-800394 7.44e-01 100 chrVIII:375456-375627 4.30e-01 100 chrXIV:443622-444032 7.89e-01 100 chrVII:883348-883783 4.40e-01 100 chrXII:818833-819174 1.04e-03 44_[-3(1.05e-06)]_24_[+3(2.67e-05)] chrXIII:195940-196356 4.03e-02 100 chrI:29-228 1.23e-02 68_[+1(7.05e-05)]_11 chrV:492211-492602 2.50e-09 11_[-2(6.81e-09)]_1_[+1(7.87e-08)]_\ 39 chrIV:525752-526162 1.07e-01 100 chrII:168539-168949 1.91e-01 100 chrII:415517-415857 2.87e-03 43_[+3(3.98e-07)]_41 chrV:86388-86840 4.01e-05 46_[-1(2.97e-09)]_33 chrIV:356286-356456 5.86e-01 100 chrI:81953-82263 5.32e-04 25_[-3(2.67e-05)]_8_[+3(9.55e-08)]_\ 35 chrVII:148527-148681 3.30e-01 100 chrXV:161127-161406 5.07e-03 27_[+3(4.53e-06)]_28_[-3(5.24e-05)]_\ 13 chrVII:555343-555683 2.47e-04 45_[-3(8.38e-07)]_39 chrV:176921-177377 1.93e-01 100 chrVII:483320-483725 9.41e-04 73_[+3(1.05e-06)]_11 chrVII:24502-24912 5.39e-01 100 chrIV:44169-44579 6.31e-01 100 chrXIII:145913-146280 3.33e-05 36_[-3(1.62e-07)]_14_[-3(1.39e-05)]_\ 18 chrVIII:411063-411614 3.67e-01 100 chrII:350678-350993 9.22e-08 48_[-1(7.25e-06)]_[+2(2.73e-08)]_3 chrXII:262811-263084 3.32e-03 46_[-3(2.47e-05)]_4_[-3(8.38e-07)]_\ 18 chrIV:221968-222312 1.79e-07 42_[+3(3.61e-09)]_42 chrXII:232092-233977 2.99e-01 100 chrXV:671022-671450 3.11e-01 100 chrXVI:192250-192660 4.29e-01 100 chrIII:138646-138751 7.54e-01 100 chrIV:52-344 4.03e-01 100 chrII:36230-36579 4.49e-05 50_[-1(2.13e-08)]_29 chrXII:794159-795330 8.72e-01 100 chrXIV:575285-575690 1.12e-01 100 chrXI:379505-379848 2.95e-05 60_[-1(2.83e-08)]_19 chrXV:882191-882352 1.15e-02 75_[-3(2.22e-06)]_9 chrIV:570922-571332 6.74e-01 100 chrV:241991-242269 7.64e-01 100 chrXIII:23783-25689 7.02e-01 100 chrXIII:306467-307064 5.25e-01 100 chrXIV:585813-586468 7.48e-01 100 chrXV:113644-113971 4.96e-07 51_[-1(6.09e-11)]_28 chrXIV:331387-331797 5.30e-02 100 chrXII:734644-734979 7.54e-13 47_[-1(3.83e-11)]_2_[+2(1.97e-09)]_\ 2 chrXIV:577002-577180 8.72e-01 100 chrII:88989-89399 6.78e-01 100 chrIV:1345333-1345688 4.97e-01 100 chrVII:738958-739340 7.54e-13 29_[-1(3.83e-11)]_2_[+2(1.97e-09)]_\ 20 chrVII:287202-287626 8.61e-05 1_[-2(3.80e-07)]_71 chrIV:579070-579381 4.29e-02 29_[-3(1.39e-05)]_4_[-3(4.21e-05)]_\ 35 chrXII:950703-951113 5.80e-01 100 chrXI:382176-382465 3.66e-04 33_[-3(1.63e-06)]_51 chrXII:281864-282274 1.90e-01 100 chrXII:656823-657180 3.09e-06 27_[+1(5.53e-10)]_52 chrXIII:732047-732394 1.04e-03 34_[-3(3.01e-07)]_50 chrXII:369241-370313 1.20e-01 100 chrII:140536-140639 2.24e-01 100 chrVII:661562-661925 9.60e-02 100 chrXI:490805-491134 2.33e-04 55_[-1(7.87e-08)]_24 chrXIII:761832-762222 9.87e-01 100 chrXIII:752895-753305 1.70e-01 100 chrIV:722424-722748 5.76e-01 100 chrVII:23921-24331 9.84e-04 37_[+2(3.98e-05)]_35 chrXII:234626-234833 1.18e-03 21_[+3(4.54e-07)]_63 chrIV:579553-580546 9.64e-01 100 chrXVI:214881-215173 3.04e-01 100 chrI:229271-229450 1.01e-02 47_[-3(2.89e-05)]_37 chrXII:809223-809543 5.66e-01 100 chrXIII:163376-163693 8.21e-01 100 chrVII:990055-990375 6.92e-01 100 chrIV:410216-410583 1.15e-11 36_[-1(5.53e-10)]_1_[+2(1.63e-08)]_\ 14 chrII:169354-169550 9.91e-01 100 chrIV:44377-44787 2.28e-01 100 chrIV:568714-569124 2.58e-10 40_[+2(5.18e-13)]_32 chrVIII:289091-289448 4.86e-01 100 chrV:396223-396563 1.78e-04 34_[-3(3.01e-07)]_2_[-3(4.53e-05)]_\ 32 chrVII:310522-310973 1.16e-01 2_[-3(3.91e-05)]_82 chrIV:117166-117554 6.55e-04 58_[-3(5.00e-06)]_[-3(2.28e-05)]_10 chrXV:908785-909195 6.65e-02 63_[-3(4.53e-05)]_21 chrIV:915896-916068 6.76e-01 100 chrVII:311008-312193 4.90e-01 100 chrX:157453-157553 2.90e-05 17_[+3(3.47e-08)]_1_[+3(6.44e-08)]_\ 50 chrXV:908584-908994 1.17e-01 100 chrVII:364235-364434 2.81e-01 100 chrIV:1163456-1163866 6.39e-01 100 chrXII:710588-710900 4.43e-04 37_[-3(9.55e-08)]_47 chrIV:130588-130951 2.39e-03 27_[+3(9.40e-07)]_57 chrVII:1000297-1000570 3.93e-03 73_[-3(4.10e-06)]_11 chrXII:241647-241993 7.63e-03 35_[-3(1.63e-06)]_5_[-3(9.71e-06)]_\ 28 chrIV:1080506-1080883 9.32e-01 100 chrIV:117779-118189 7.01e-01 100 chrV:23482-23953 5.99e-03 28_[-3(1.06e-05)]_56 chrI:142649-143531 3.91e-01 100 chrV:85789-86199 5.88e-01 100 chrVII:205353-205758 7.05e-05 22_[-1(1.44e-08)]_57 chrXI:24916-25162 7.48e-01 100 chrV:491039-491441 1.40e-03 28_[-3(3.71e-06)]_56 chrVII:323780-324063 8.19e-01 100 chrXVI:435726-436144 2.24e-05 23_[-2(1.02e-07)]_49 chrXV:506240-506423 8.16e-01 100 chrII:226896-227371 3.82e-01 100 chrX:73401-73501 7.77e-01 100 chrV:354755-355298 5.89e-02 46_[+3(4.87e-05)]_38 chrXVI:76356-76714 7.00e-03 55_[+3(1.63e-06)]_29 chrII:414802-415212 4.76e-01 100 chrXII:806096-806450 7.80e-01 100 chrIV:645041-645395 6.56e-08 [-2(2.73e-08)]_[+1(7.25e-06)]_51 chrXIII:296782-298843 7.62e-02 47_[-3(7.47e-05)]_37 chrXV:678831-679168 1.25e-03 58_[+3(9.40e-07)]_26 chrV:166995-167405 6.64e-01 100 chrIX:257354-257713 2.01e-02 20_[-3(1.27e-05)]_12_[-3(1.06e-05)]_\ 36 chrVI:4466-4984 8.87e-05 42_[-3(2.75e-08)]_8_[-3(2.75e-08)]_\ 18 chrVIII:75621-76031 1.22e-01 100 chrVII:987337-987699 2.16e-01 100 chrXIV:63988-64113 9.49e-01 100 chrXII:370457-371050 7.49e-03 11_[+3(8.00e-05)]_53_[+3(1.39e-05)]_\ 4 chrVIII:105408-105611 7.78e-01 100 chrII:135947-136312 3.58e-01 100 chrVII:439410-439681 8.18e-01 100 chrX:378177-378277 1.38e-10 48_[-1(2.83e-08)]_2_[+2(9.00e-10)]_\ 1 chrIV:509493-509903 9.02e-01 100 chrXV:274488-274911 3.33e-06 30_[-1(7.51e-10)]_49 chrVIII:518206-518616 9.16e-01 100 chrV:424808-425137 8.74e-01 100 chrXII:605187-605588 4.56e-04 67_[+1(1.89e-07)]_12 chrXVI:377963-378373 9.46e-01 100 chrVII:702906-703264 9.42e-01 100 chrXIV:495216-495580 4.66e-03 27_[+3(3.03e-06)]_1_[+3(1.94e-05)]_\ 40 chrVII:534814-535207 1.75e-03 41_[+3(3.35e-06)]_43 chrIII:177145-177595 2.68e-01 100 chrIV:1087059-1087260 6.07e-01 100 chrII:89654-89932 4.29e-04 35_[+3(5.51e-06)]_4_[+3(7.87e-08)]_\ 29 chrIV:1201575-1201986 1.92e-13 26_[-1(2.35e-08)]_1_[+2(3.14e-12)]_\ 24 chrXI:163616-164019 3.53e-01 100 chrXIV:726019-726402 1.16e-05 29_[+1(7.61e-09)]_50 chrXII:950938-951348 9.65e-01 100 chrVII:328412-328886 1.61e-01 100 chrXII:731932-732291 6.10e-06 35_[-1(7.51e-10)]_44 chrXVI:404924-405658 2.89e-01 100 chrVII:1050229-1050501 5.45e-02 100 chrXV:842544-842811 1.54e-02 56_[-1(8.54e-05)]_23 chrXVI:193140-193401 9.87e-01 100 chrIX:388278-388543 3.22e-01 100 chrXV:989081-989444 2.49e-04 34_[+1(1.02e-06)]_45 chrII:414114-414524 4.89e-01 100 chrXVI:188613-188951 4.72e-04 10_[-1(2.42e-05)]_25_[-3(1.16e-05)]_\ 28 chrIII:107367-107613 4.38e-01 100 chrVII:557775-557879 4.58e-01 100 chrV:85098-85527 1.10e-03 7_[-3(6.07e-06)]_13_[-3(3.01e-07)]_\ 48 chrIV:555308-555718 2.30e-01 100 chrIV:1163817-1164227 1.25e-01 100 chrII:555805-556215 9.81e-02 44_[+1(9.00e-05)]_35 chrX:374292-374392 2.58e-10 50_[-2(5.18e-13)]_22 chrV:269340-269750 1.00e-01 100 chrXII:636957-637917 1.31e-01 100 chrIV:1492270-1492680 1.37e-01 100 chrIV:1300947-1301321 1.33e-04 23_[-3(2.01e-06)]_61 chrXIV:63132-63543 2.64e-02 28_[+3(6.07e-06)]_56 chrIII:292562-292972 3.38e-01 100 chrXIII:352101-352485 8.22e-05 43_[-1(2.13e-08)]_36 chrXIII:552512-552625 4.67e-03 69_[-2(1.51e-05)]_3 chrVII:405292-405717 3.37e-10 43_[+2(5.18e-13)]_29 chrXIV:104632-105051 6.50e-15 20_[-1(6.09e-11)]_1_[+2(1.97e-11)]_\ 30 chrXI:432678-432844 7.57e-01 100 chrII:60849-61235 2.72e-03 78_[+3(1.05e-06)]_6 chrIV:322997-323343 9.92e-01 100 chrV:434408-434788 1.16e-01 100 chrXIII:222543-222953 3.43e-01 100 chrVII:882364-883417 6.90e-01 100 chrVIII:85221-85538 1.20e-04 14_[+1(2.83e-08)]_65 chrVIII:451411-451999 5.13e-02 100 chrX:422763-422863 4.16e-06 15_[+2(2.48e-10)]_57 chrX:390918-391018 3.10e-03 25_[+1(5.33e-07)]_54 chrXII:1012125-1012387 1.03e-03 30_[-3(3.35e-06)]_54 chrVII:730959-731345 2.94e-12 41_[-1(3.40e-10)]_2_[+2(1.10e-09)]_\ 8 chrXII:374183-374590 1.52e-09 25_[-1(7.87e-08)]_1_[+2(6.81e-09)]_\ 25 chrXVI:731932-732294 2.90e-03 39_[-3(1.05e-06)]_45 chrXII:199100-199686 2.32e-01 100 chrXI:25568-25978 2.70e-01 100 chrIV:519577-519924 3.65e-07 49_[-1(7.61e-09)]_2_[+2(4.49e-05)] chrXVI:279884-280294 5.04e-04 73_[-3(1.91e-07)]_11 chrII:556862-557272 7.82e-01 100 chrXIV:102537-102911 2.82e-12 48_[-1(3.40e-10)]_2_[+2(1.10e-09)]_\ 1 chrV:139196-139479 9.72e-01 100 chrXV:412063-412473 6.37e-01 100 chrXVI:193711-194537 1.23e-01 100 chrIV:1354625-1354803 8.45e-01 100 chrXIII:754422-754775 5.72e-03 21_[+3(3.71e-06)]_63 chrVIII:74977-75374 1.16e-02 26_[-3(2.01e-06)]_1_[-3(4.21e-05)]_\ 41 chrXIII:652357-652932 4.62e-01 100 chrXV:94496-94833 4.27e-03 19_[-3(6.62e-07)]_65 chrV:42157-42420 3.17e-01 100 chrIV:434067-434515 6.50e-15 38_[-2(1.97e-11)]_1_[+1(6.09e-11)]_\ 12 chrV:117634-118269 2.15e-01 100 chrXIII:915087-915497 3.52e-02 33_[-3(8.00e-05)]_51 chrXIV:631751-632083 3.48e-01 100 chrI:142649-143540 3.91e-01 100 chrXIII:550858-550961 1.24e-01 100 chrIII:124560-124970 5.37e-01 100 chrXIII:267927-268288 5.04e-01 100 chrX:348970-349070 9.78e-01 100 chrVIII:296874-297215 2.32e-03 61_[-3(6.07e-06)]_23 chrXVI:585864-586103 6.98e-01 100 chrXII:441233-441643 5.94e-01 100 chrX:703272-703372 6.91e-01 100 chrXV:383235-383455 6.27e-01 100 chrXIV:499343-499606 6.17e-03 6_[+3(4.53e-06)]_78 chrXV:867574-867728 3.34e-01 100 chrIV:332097-332507 3.88e-01 100 chrII:167899-168203 4.62e-02 32_[-3(3.91e-05)]_1_[-3(6.96e-05)]_\ 35 chrXIII:224077-224341 6.95e-04 28_[+3(4.54e-07)]_9_[+3(1.16e-05)]_\ 31 chrVIII:388755-389175 1.90e-02 100 chrX:523896-523996 2.51e-05 33_[+1(2.97e-09)]_46 chrXI:309360-309770 5.15e-01 100 chrV:430993-431552 1.06e-01 100 chrXI:355393-355801 1.41e-01 100 chrIX:254237-254542 1.19e-03 16_[+3(5.17e-07)]_34_[+3(4.87e-05)]_\ 18 chrX:121198-121298 1.84e-01 100 chrVII:371219-371494 5.54e-04 47_[-3(7.46e-07)]_37 chrXIV:415750-415986 7.50e-01 100 chrXIV:442839-443325 6.88e-01 100 chrXVI:453478-453715 1.74e-01 100 chrIV:465165-465506 8.12e-01 100 chrIV:1270027-1270437 5.41e-01 100 chrVII:520-730 8.33e-01 100 chrIV:386017-386181 9.73e-01 100 chrXIII:259056-259410 1.48e-05 28_[+1(2.97e-09)]_51 chrXV:487262-487628 3.81e-06 50_[-1(3.40e-10)]_29 chrV:75137-75547 4.41e-01 100 chrIV:229701-230111 1.00e+00 100 chrXV:33-305 4.34e-02 65_[+1(6.47e-05)]_14 chrIV:1525226-1525661 8.41e-04 7_[+3(3.71e-06)]_24_[+3(3.01e-07)]_\ 37 chrXI:308039-308383 5.49e-05 28_[+1(2.83e-08)]_51 chrIV:359396-359806 1.87e-05 32_[-1(1.05e-08)]_47 chrXI:162341-162726 3.37e-10 19_[-2(5.18e-13)]_53 chrXV:619253-619500 2.89e-02 100 chrVI:137333-137725 2.94e-12 22_[-2(1.10e-09)]_2_[+1(3.40e-10)]_\ 27 chrXV:252729-253139 8.41e-01 100 chrVII:774174-774640 6.15e-05 20_[+2(1.63e-08)]_52 chrVI:148400-148810 9.92e-01 100 chrVII:346000-346585 9.44e-01 100 chrIV:1075338-1075719 1.05e-06 9_[-2(2.60e-09)]_1_[+1(8.76e-05)]_\ 41 chrII:6228-6638 7.57e-01 100 chrVIII:17099-17254 9.54e-01 100 chrXVI:304035-304137 2.50e-01 100 chrII:304737-305147 8.25e-01 100 chrIV:332345-332755 8.46e-01 100 chrXIV:6563-6884 1.16e-03 4_[-3(1.31e-06)]_80 chrV:102239-102649 2.37e-01 100 chrXVI:810486-810856 2.93e-06 61_[-1(3.40e-10)]_18 chrXI:109881-109991 1.88e-01 100 chrXIV:230503-230913 8.11e-01 100 chrV:461836-462171 9.38e-01 100 chrXII:489273-489589 1.25e-03 16_[-1(2.00e-06)]_63 chrI:28553-28848 8.23e-01 100 chrX:538384-538484 2.19e-02 55_[-1(6.56e-06)]_24 chrV:135231-135668 1.92e-13 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chrIV:1466712-1467122 9.60e-01 100 chrXI:617678-618088 2.95e-01 100 chrV:6165-6526 5.81e-04 8_[-3(6.49e-05)]_28_[-3(9.55e-08)]_\ 32 chrIII:1069-1268 5.48e-01 100 chrXVI:795528-795938 7.64e-01 100 chrVII:541664-542133 1.93e-01 100 chrV:443109-443459 8.04e-07 13_[+1(3.83e-11)]_66 chrXII:953326-953513 3.92e-01 100 chrXII:1028238-1028575 2.74e-02 40_[-3(6.68e-06)]_44 chrVIII:518411-518821 4.30e-01 100 chrIX:316146-316577 1.82e-02 39_[-3(7.35e-06)]_45 chrXII:712148-712558 7.49e-01 100 chrXVI:192456-192866 3.43e-01 100 chrIV:884199-884615 4.56e-04 10_[-1(1.89e-07)]_69 chrIII:127546-127888 3.94e-06 55_[-1(3.40e-10)]_24 chrVIII:34469-35216 8.04e-01 100 chrIV:411270-411633 9.04e-04 32_[-3(2.22e-06)]_12_[-3(2.47e-05)]_\ 24 chrXIV:301696-301995 7.58e-01 100 chrX:453432-453532 3.05e-01 100 chrXIII:556959-557256 6.11e-01 100 chrII:236894-237304 9.82e-01 100 chrV:306436-306846 2.41e-01 100 chrXII:729425-729835 6.57e-01 100 chrXIII:759463-759873 7.83e-01 100 chrXV:901446-901595 5.21e-03 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chrXIII:388324-388591 6.25e-02 100 chrVII:788328-788709 2.72e-03 58_[+3(2.22e-06)]_26 chrXV:159333-160290 3.13e-01 100 chrXV:1027897-1028275 9.25e-01 100 chrXII:233919-234092 9.13e-01 100 chrXVI:433304-433714 3.93e-01 100 chrX:75352-75452 7.57e-04 23_[+3(9.40e-07)]_26_[+3(1.05e-06)]_\ 19 chrXII:5447-5925 1.27e-04 28_[-3(2.75e-08)]_14_[-3(3.01e-07)]_\ 1_[-3(2.23e-07)]_9 chrVII:544462-544832 9.71e-02 100 chrX:197208-197308 3.78e-06 28_[+1(5.53e-10)]_51 chrVIII:122315-122521 1.64e-01 100 chrIV:125335-125745 5.17e-01 100 chrVIII:505827-506186 1.91e-04 42_[+3(3.98e-07)]_42 chrII:414603-415013 9.57e-01 100 chrV:77555-77877 7.73e-01 100 chrV:311823-312268 5.61e-15 43_[-2(6.99e-12)]_1_[+1(1.16e-10)]_\ 7 chrXVI:856719-857090 2.53e-07 54_[-1(5.53e-10)]_25 chrIV:525535-525945 1.95e-02 17_[-3(4.21e-05)]_67 chrXV:252997-253407 5.72e-01 100 chrXII:201806-202147 9.26e-01 100 chrXIV:216327-216737 9.11e-01 100 chrX:354073-354173 4.28e-08 32_[-1(4.26e-07)]_17_[+2(2.04e-08)]_\ 2 chrIV:980849-981222 4.01e-05 42_[+1(2.97e-09)]_37 chrII:604133-604481 1.19e-03 26_[-3(8.00e-05)]_[-3(5.00e-06)]_42 chrXII:261018-261428 9.68e-01 100 chrXV:710019-710358 2.08e-01 100 chrXII:1064389-1064497 9.99e-01 100 chrXII:1002267-1002677 4.32e-01 100 chrXI:431961-432371 7.63e-01 100 chrVII:959365-959582 8.62e-01 100 chrVII:73729-74101 1.06e-04 9_[+1(2.83e-08)]_70 chrV:207178-207565 1.16e-01 100 chrIX:138153-138465 9.83e-01 100 chrV:141056-141444 1.90e-01 100 chrXV:438478-438909 8.49e-09 6_[-1(1.05e-08)]_24_[+2(4.19e-07)]_\ 21 chrIV:555924-556334 7.23e-02 100 chrVII:278340-278565 1.82e-01 100 chrVI:226546-226927 1.92e-13 17_[-2(3.14e-12)]_1_[+1(2.35e-08)]_\ 33 chrIX:98517-98622 7.88e-01 100 chrXII:48736-49074 3.67e-03 45_[+3(4.10e-06)]_39 chrV:151993-152205 9.66e-01 100 chrVII:856716-857024 8.34e-03 41_[+3(2.47e-06)]_43 chrXIV:374714-375068 1.54e-04 34_[-1(2.13e-08)]_45 chrXIV:88917-89699 9.97e-01 100 chrIV:1355732-1355976 1.02e-03 32_[+3(2.60e-07)]_8_[+3(1.05e-06)]_\ 28 chrXII:921687-921967 2.48e-03 60_[+3(1.31e-06)]_24 chrIV:221315-221725 5.42e-01 100 chrV:139563-139772 5.99e-01 100 chrXII:253166-253361 3.51e-01 100 chrV:303030-303440 7.01e-01 100 chrVII:930860-931199 6.95e-02 16_[+1(3.56e-05)]_63 chrI:141679-141895 5.51e-01 100 chrVII:122117-122517 1.92e-13 8_[-1(2.35e-08)]_1_[+2(3.14e-12)]_\ 42 chrIX:394719-395114 7.48e-01 100 chrXII:837610-839280 2.27e-01 100 chrXVI:75476-75638 3.74e-01 100 chrX:391843-391943 4.48e-03 54_[-3(8.38e-07)]_30 chrIV:218385-218795 6.67e-01 100 chrXII:11049-11552 1.06e-04 17_[-3(2.75e-08)]_14_[-3(1.15e-07)]_\ 17_[-3(3.71e-06)]_4 chrXI:322386-322776 1.43e-01 100 chrXI:517275-517489 7.32e-01 100 chrVIII:562252-562622 1.36e-04 76_[+3(2.75e-08)]_8 chrV:100789-101199 9.37e-02 100 chrII:256256-256666 5.92e-01 100 chrIV:541297-541794 9.79e-01 100 chrXV:761530-761940 4.86e-01 100 chrXV:968063-968414 5.48e-04 78_[+3(1.63e-06)]_6 chrXIII:504721-505133 5.46e-05 24_[-1(1.44e-08)]_55 chrIV:45793-46203 8.45e-01 100 chrXV:409677-410087 2.65e-01 100 chrXIV:628794-628976 7.48e-01 100 chrIV:992635-993025 3.58e-02 58_[-1(3.56e-05)]_21 chrXIII:888636-888766 5.34e-02 100 chrVII:878586-878989 5.00e-01 100 chrIV:891993-892403 3.47e-01 100 chrVII:794256-794599 5.61e-15 46_[-1(1.16e-10)]_1_[+2(6.99e-12)]_\ 4 chrXV:110188-110598 5.01e-01 100 chrXII:92369-92810 1.21e-03 67_[+2(1.01e-05)]_5 chrIII:124779-125189 4.06e-01 100 chrIV:835763-836243 1.08e-02 9_[-3(4.53e-06)]_75 chrXV:866575-866943 5.21e-03 27_[-3(1.39e-05)]_1_[+3(3.71e-06)]_\ 40 chrIV:1461584-1462011 7.05e-05 54_[+1(1.44e-08)]_25 chrXI:108754-109092 6.60e-04 46_[-3(7.46e-07)]_38 chrIV:946125-946584 4.28e-08 14_[-1(4.26e-07)]_17_[+2(2.04e-08)]_\ 20 chrVII:648962-649346 1.24e-02 27_[+3(4.10e-06)]_57 chrXII:348149-348523 6.01e-01 100 chrIII:227784-228164 1.82e-05 24_[-1(2.30e-09)]_55 chrXIII:761832-762241 9.87e-01 100 chrVIII:160384-160794 5.60e-01 100 chrXVI:210072-210436 1.93e-01 100 chrVII:845467-845840 2.11e-03 52_[-1(3.56e-05)]_27 chrXIV:234215-234625 4.61e-01 100 chrXVI:520191-520525 4.68e-02 54_[-3(1.39e-05)]_30 chrVII:700494-701228 9.22e-01 100 chrXII:820048-820458 9.71e-01 100 chrXI:334516-334695 7.73e-01 100 chrXII:628211-628639 1.25e-04 14_[-1(1.44e-08)]_65 chrXI:538-750 9.84e-01 100 chrVII:648163-648338 6.38e-01 100 chrVIII:382925-383305 7.95e-06 33_[+3(3.47e-08)]_1_[+3(1.94e-05)]_\ 34 chrXIII:163676-163863 7.42e-01 100 chrXV:1006905-1007077 3.85e-01 100 chrXV:854042-854440 5.11e-15 11_[-2(6.99e-12)]_1_[+1(1.16e-10)]_\ 39 chrX:172686-172786 2.31e-01 100 chrXIII:499711-499952 1.12e-01 100 chrX:651269-651369 2.13e-02 37_[-3(1.39e-05)]_9_[-3(6.05e-05)]_\ 22 chrXII:897720-898032 1.90e-03 33_[-3(4.53e-06)]_51 chrVIII:556202-556316 6.37e-01 100 chrXVI:794511-794800 2.28e-03 30_[-3(1.46e-06)]_2_[-3(4.54e-07)]_\ 36 chrX:451267-451367 3.09e-01 100 chrX:123523-123623 7.01e-01 100 chrXII:424062-424480 8.33e-02 100 chrVIII:103902-104241 1.90e-01 34_[-3(9.19e-05)]_50 chrIX:386626-386914 4.56e-01 100 chrXI:518836-519252 9.48e-02 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************