Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MCM1/BY4742--MCM1.fa
Database contains 877 sequences, 368324 residues

MOTIFS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MCM1/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
AACCACTH 8 AACCACTT
GGYTCGA 7 GGTTCGA
AMCAWC 6 ACCAAC
CCCAYACA 8 CCCACACA
ATGGCAWC 8 ATGGCAAC
TACCGW 6 TACCGA
GAAGA 5 GAAGA
CCTTASC 7 CCTTAGC
GYGGTCTA 8 GTGGTCTA
GATTWGAA 8 GATTAGAA
TGGCGYA 7 TGGCGCA
AAAARAAA 8 AAAAAAAA
CTCTMCCA 8 CTCTCCCA
GGAAATW 7 GGAAATT

Random model letter frequencies (/srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MCM1/background):
A 0.296 C 0.204 G 0.204 T 0.296

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
AAAARAAA DREME-12 chrXVI - 17581 17588 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIII - 24906 24913 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIII - 24906 24913 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIII - 24906 24913 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIII - 24906 24913 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIII - 29164 29171 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIII - 30777 30784 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXI + 39049 39056 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrII + 45124 45131 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXI + 46588 46595 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV + 61799 61806 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV + 67471 67478 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV + 67510 67517 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV + 69058 69065 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV + 69134 69141 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrI + 72623 72630 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrI + 72623 72630 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrI + 72623 72630 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXI + 74602 74609 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVI - 75908 75915 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV - 79974 79981 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVI - 82499 82506 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIV - 83630 83637 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV + 85390 85397 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV + 86183 86190 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV + 86787 86794 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIV + 87334 87341 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrII + 88166 88173 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrII - 89222 89229 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIV - 89319 89326 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXII - 92655 92662 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV + 93980 93987 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVIII - 94734 94741 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXVI - 106336 106343 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXI + 106660 106667 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV + 111162 111169 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV + 118129 118136 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV + 118182 118189 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrX - 123440 123447 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIII + 123752 123759 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrX - 126483 126490 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrX + 126644 126651 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVIII + 126857 126864 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXVI + 132916 132923 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXVI + 132966 132973 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV + 135322 135329 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV + 135417 135424 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrII - 135975 135982 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIII + 142660 142667 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXI + 143453 143460 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVIII - 149130 149137 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVI - 158140 158147 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVI - 162299 162306 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXI + 163608 163615 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXII + 167923 167930 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXII + 167929 167936 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrI + 172014 172021 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrI + 172019 172026 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrI - 181260 181267 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVI + 191502 191509 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrX - 195421 195428 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrX - 195565 195572 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrX + 197303 197310 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIV - 198785 198792 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV - 207207 207214 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXVI + 210182 210189 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVI + 221881 221888 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVI + 221973 221980 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVI + 221978 221985 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVI + 221983 221990 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVI - 226828 226835 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIII - 227812 227819 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIV + 234308 234315 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXII - 241739 241746 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIII - 253530 253537 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIX - 254434 254441 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIX - 255868 255875 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV - 274775 274782 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV - 282234 282241 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXI + 283443 283450 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIII - 290873 290880 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV + 295366 295373 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIII - 297470 297477 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIII - 297470 297477 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIII - 297470 297477 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXII - 300448 300455 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXVI + 303889 303896 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV - 305097 305104 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV - 306020 306027 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVII + 311253 311260 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVII + 311253 311260 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVII - 311436 311443 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVII - 311436 311443 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXVI + 338829 338836 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIV - 349049 349056 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrX - 349116 349123 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV + 355095 355102 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIV - 359675 359682 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIV + 359741 359748 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIII - 363136 363143 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIII + 363154 363161 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXII - 370821 370828 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXII - 370955 370962 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIV + 387161 387168 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVIII + 389110 389117 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrX + 391753 391760 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrX + 392095 392102 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrII - 393272 393279 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVIII + 401095 401102 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIV - 411547 411554 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrX - 415105 415112 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIII - 420738 420745 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrX - 423012 423019 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrX + 423088 423095 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV - 423319 423326 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV - 427862 427869 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIV - 434126 434133 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV + 434531 434538 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV + 435744 435751 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXVI + 435885 435892 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV - 438781 438788 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIV - 443718 443725 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV - 469583 469590 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVII - 476355 476362 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVII - 476355 476362 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrII + 477333 477340 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrV + 492336 492343 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIV - 500565 500572 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIV - 500565 500572 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIV - 500565 500572 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXI - 518068 518075 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXI - 519066 519073 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXI + 519102 519109 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXI + 519186 519193 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXII - 523013 523020 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrX + 523987 523994 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIV - 529621 529628 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrX - 531899 531906 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrX - 531904 531911 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIV + 541566 541573 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVII + 544563 544570 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXII + 547495 547502 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIV + 560595 560602 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIV + 577196 577203 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXVI - 582133 582140 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIV + 586136 586143 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVII - 609805 609812 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrII - 614605 614612 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrII - 615719 615726 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXII + 646380 646387 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIII - 652448 652455 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIII + 652803 652810 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrX - 663944 663951 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV + 678990 678997 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV + 679030 679037 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrII + 681531 681538 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXII + 713327 713334 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXVI - 719109 719116 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXII - 728346 728353 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVII - 731262 731269 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV - 779945 779952 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV - 779945 779952 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV - 779945 779952 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXII + 790001 790008 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIII - 808147 808154 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXII - 809523 809530 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXII + 809577 809584 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXII - 818500 818507 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXVI + 819430 819437 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVII + 857310 857317 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV - 866778 866785 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVII + 876309 876316 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVII - 876465 876472 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXVI - 880172 880179 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXVI + 880276 880283 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXVI + 880287 880294 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIII + 880801 880808 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXIII + 880830 880837 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVII + 882769 882776 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVII + 882769 882776 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVII + 882769 882776 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV + 904146 904153 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVII - 919983 919990 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVII + 930935 930942 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVII + 930940 930947 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXII + 932425 932432 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV + 962367 962374 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV - 968049 968056 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV + 968163 968170 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrVII + 1004137 1004144 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXII + 1012165 1012172 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIV + 1017198 1017205 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIV + 1017303 1017310 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV - 1028940 1028947 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrXV + 1073286 1073293 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIV - 1080663 1080670 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIV - 1080767 1080774 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIV - 1305758 1305765 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIV - 1419015 1419022 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIV + 1465935 1465942 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIV - 1490034 1490041 4.09e-05 0.143 AAAAGAAA
AAAARAAA DREME-12 chrIV + 1490073 1490080 4.09e-05 0.143 AAAAGAAA
DEBUGGING INFORMATION

Command line: 

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MCM1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MCM1/background --motif AAAARAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MCM1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MCM1/BY4742--MCM1.fa

Settings: 


  

    output_directory = /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MCM1/fimo_out_12
    MEME file name = /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MCM1/dreme_out/dreme.xml
    sequence file name = /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MCM1/BY4742--MCM1.fa
  
  

    background file name = /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--MCM1/background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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