Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.013741 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.057265 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.07426 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.014562 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.067502 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background Finished invoke: name: bg status: 0 time: 0.011118 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 947.805239 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 142.469252 Invoking: centrimo -seqlen 380 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.240448 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.465972 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary DDSSCTYWAMCMACTVGGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.688839 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary SGGRHTCGAACCSVKGAYCTY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.577665 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary ACACCCRTACAYYWH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.477532 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary ARAAAWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.566017 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.285106 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary GCGCM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.473336 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary ACATYAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.311529 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.31385 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary CDTTGGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.294898 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary GTCYCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.24587 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary GARTCATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.275604 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary CCGTGMTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.263466 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary CCAAMAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.2508 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary ACAAAGCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.224311 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary TRTAYA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.432736 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary CTCTCSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.269246 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary ACTGAGCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 0.219797 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_18 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary ATRCTAAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo18 status: 0 time: 0.245286 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_19 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary ATCAKAAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo19 status: 0 time: 0.264047 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_20 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary ACACGCCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo20 status: 0 time: 0.321248 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/spamo_out_21 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background -primary SATCGTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml Finished invoke: name: spamo21 status: 0 time: 0.24284 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif DDSSCTYWAMCMACTVGGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo1 status: 0 time: 0.228191 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif SGGRHTCGAACCSVKGAYCTY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo2 status: 0 time: 0.230049 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif ACACCCRTACAYYWH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo3 status: 0 time: 0.225656 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif ARAAAWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo4 status: 0 time: 0.122153 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo5 status: 0 time: 0.136401 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif GCGCM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo6 status: 0 time: 0.117272 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif ACATYAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo7 status: 0 time: 0.135492 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo8 status: 0 time: 0.136567 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif CDTTGGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo9 status: 0 time: 0.137264 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif GTCYCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo10 status: 0 time: 0.135889 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif GARTCATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo11 status: 0 time: 0.136319 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif CCGTGMTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo12 status: 0 time: 0.136642 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif CCAAMAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo13 status: 0 time: 0.136255 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif ACAAAGCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo14 status: 0 time: 0.135224 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif TRTAYA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo15 status: 0 time: 0.118659 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif CTCTCSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo16 status: 0 time: 0.135557 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif ACTGAGCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo17 status: 0 time: 0.135268 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_18 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif ATRCTAAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo18 status: 0 time: 0.1352 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_19 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif ATCAKAAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo19 status: 0 time: 0.136958 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_20 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif ACACGCCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo20 status: 0 time: 0.13552 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/fimo_out_21 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/background --motif SATCGTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/BY4742--HIR1.fa Finished invoke: name: fimo21 status: 0 time: 0.135379 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HIR1/summary.tsv Finished invoke: name: summary status: 0 time: 0.173516 Done