Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HAA1/BY4742--HAA1.fa
Database contains 836 sequences, 346153 residues

MOTIFS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HAA1/dreme_out/dreme.xml (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
SRGTTCGA 8 GGGTTCGA
AYCCRTAC 8 ACCCATAC
CTBGGCCA 8 CTCGGCCA
GCCWTAAC 8 GCCTTAAC
GCKCTACC 8 GCGCTACC
ACTARACC 8 ACTAGACC
CCCAHACA 8 CCCACACA
CGCCASAC 8 CGCCACAC
ATCKTGAG 8 ATCGTGAG
AGAARA 6 AGAAAA
CYTGCGC 7 CTTGCGC
CCDTGCA 7 CCGTGCA
CGTTGCCA 8 CGTTGCCA
ATGWGATA 8 ATGTGATA
GATTWGAA 8 GATTAGAA
AGTGGTTA 8 AGTGGTTA
AYTGCGCC 8 ACTGCGCC
TGACCGMA 8 TGACCGAA
ARTCATAC 8 AGTCATAC
GGGGWTCA 8 GGGGATCA
CKTTGGGC 8 CGTTGGGC
GCATGSGA 8 GCATGGGA
GAAAHAAA 8 GAAAAAAA
CGGTMTCC 8 CGGTCTCC

Random model letter frequencies (/srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HAA1/background):
A 0.311 C 0.189 G 0.189 T 0.311

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
GAAAHAAA DREME-23 chrII + 207 214 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 10360 10367 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIII - 11109 11116 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIII - 11109 11116 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVIII + 36210 36217 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVIII + 36226 36233 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrII - 36510 36517 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrII - 45079 45086 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrII - 45223 45230 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrII + 45240 45247 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII + 48879 48886 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV - 52713 52720 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV - 52713 52720 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI + 56155 56162 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIII + 58845 58852 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX + 59053 59060 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV - 61200 61207 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIV + 63341 63348 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV - 69089 69096 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV + 69132 69139 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV + 69356 69363 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX - 73841 73848 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVIII + 74966 74973 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVIII + 75249 75256 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX - 75594 75601 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIII + 82364 82371 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIII + 82450 82457 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 83626 83633 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVIII + 85272 85279 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV + 85409 85416 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV - 85450 85457 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV - 86697 86704 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV + 86782 86789 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrII - 88262 88269 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIV - 89328 89335 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrII - 89909 89916 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII - 92020 92027 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV + 94589 94596 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV + 94612 94619 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVIII - 104107 104114 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIV - 105054 105061 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVI + 106596 106603 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVI + 106673 106680 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV + 110931 110938 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 115593 115600 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVIII + 116039 116046 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX + 121750 121757 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVIII - 126156 126163 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIII + 127573 127580 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV + 131072 131079 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV - 135275 135282 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI - 135689 135696 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX + 140210 140217 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX + 140210 140217 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX - 140283 140290 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX - 140283 140290 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV + 140440 140447 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV - 140496 140503 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrI - 142508 142515 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIII + 142664 142671 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrI + 143231 143238 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII + 146173 146180 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVIII - 149060 149067 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV + 152098 152105 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV + 152379 152386 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV + 152923 152930 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX + 157843 157850 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrII - 159987 159994 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII - 159989 159996 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX - 160154 160161 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX - 160259 160266 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV + 161333 161340 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVI - 162304 162311 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXI - 162683 162690 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIII - 163502 163509 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII + 164148 164155 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII + 164200 164207 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII + 167916 167923 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrII - 168796 168803 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII - 168886 168893 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII - 169063 169070 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIX - 175104 175111 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIII + 178439 178446 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIX + 183401 183408 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI - 188834 188841 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI - 188930 188937 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI - 188941 188948 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI + 194490 194497 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 205362 205369 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVI + 210477 210484 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVI + 210608 210615 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIX + 210891 210898 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 217436 217443 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV + 218572 218579 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXI - 219989 219996 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVI + 221875 221882 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVI + 226608 226615 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVI + 226673 226680 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVI + 226928 226935 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV - 228426 228433 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 228599 228606 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV + 232302 232309 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVIII - 237744 237751 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIII - 238826 238833 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIII - 238826 238833 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV + 242368 242375 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV + 242368 242375 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 254379 254386 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 254395 254402 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrII - 266626 266633 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV + 269158 269165 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV - 270456 270463 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV + 270474 270481 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI - 281793 281800 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII + 282603 282610 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII - 282710 282717 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXI + 283193 283200 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 287218 287225 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV + 288260 288267 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV - 288363 288370 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIV + 290292 290299 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII - 290897 290904 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIII + 292717 292724 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVIII + 293659 293666 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII - 297004 297011 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV - 301335 301342 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIV - 302334 302341 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIV + 302473 302480 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI - 302884 302891 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI - 302897 302904 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI + 302993 303000 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXI + 308094 308101 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 308113 308120 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXI + 308132 308139 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 308270 308277 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 310903 310910 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXI + 313387 313394 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXI + 322424 322431 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIX - 325822 325829 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV + 331719 331726 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV + 331790 331797 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI + 338811 338818 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI + 338833 338840 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV + 340491 340498 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII + 352461 352468 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 355491 355498 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 359679 359686 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII - 363142 363149 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII - 366216 366223 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII + 369465 369472 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIX - 370501 370508 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVIII + 375405 375412 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX + 390995 391002 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXI + 393511 393518 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV - 396428 396435 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 401473 401480 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 401503 401510 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI - 404734 404741 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI - 404771 404778 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 412278 412285 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX + 414885 414892 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrII + 414993 415000 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX - 415042 415049 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrII + 415639 415646 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrII - 415774 415781 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 423208 423215 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII - 427231 427238 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV + 431014 431021 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXI - 431574 431581 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI + 435881 435888 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrV - 438777 438784 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 438796 438803 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 438829 438836 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 438840 438847 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIV - 443123 443130 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII - 448768 448775 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV + 449854 449861 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVIII + 452812 452819 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVIII - 455644 455651 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 456247 456254 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 456247 456254 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV - 464602 464609 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVIII - 467076 467083 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVIII + 475600 475607 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrII + 477373 477380 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII - 480795 480802 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 482744 482751 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII - 489473 489480 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIV - 499479 499486 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIV + 499555 499562 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII - 500885 500892 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrII - 504675 504682 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII - 505011 505018 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV + 505350 505357 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVIII + 505939 505946 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXI - 518078 518085 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXI - 518132 518139 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 519834 519841 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 519866 519873 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 521109 521116 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII - 522228 522235 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX + 523920 523927 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 525238 525245 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 525260 525267 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX - 531908 531915 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX - 531908 531915 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX + 531979 531986 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX + 531979 531986 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX - 538638 538645 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 544567 544574 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 555215 555222 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 555324 555331 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 555346 555353 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 555566 555573 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV - 558750 558757 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIV + 560680 560687 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIV - 568269 568276 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII + 572871 572878 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXI + 579096 579103 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrII + 593044 593051 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrII + 593126 593133 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV + 594300 594307 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII + 605849 605856 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX - 607855 607862 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX - 607863 607870 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 609540 609547 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 609722 609729 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX - 618035 618042 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXI + 618945 618952 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI + 622400 622407 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI - 627565 627572 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII - 628571 628578 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIV - 632673 632680 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV - 639425 639432 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrII + 642925 642932 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrII + 642969 642976 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV + 645101 645108 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII - 646072 646079 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 649254 649261 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX - 651502 651509 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI - 653964 653971 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI - 653990 653997 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV - 663703 663710 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX - 663940 663947 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrII + 680665 680672 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 700809 700816 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 700809 700816 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX + 703351 703358 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX + 703380 703387 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrX + 703479 703486 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII - 713115 713122 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII - 713311 713318 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 731266 731273 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI + 732333 732340 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 739111 739118 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII - 756397 756404 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII + 759340 759347 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI - 769070 769077 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 774223 774230 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV - 779180 779187 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV - 779941 779948 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII - 781587 781594 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 784947 784954 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI - 794688 794695 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 807906 807913 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII - 808174 808181 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII - 819074 819081 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI - 819619 819626 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV + 826371 826378 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 828913 828920 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 835992 835999 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 857304 857311 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 857363 857370 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXVI + 860199 860206 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII + 861166 861173 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII - 861380 861387 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 876469 876476 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 876605 876612 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 878683 878690 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII - 884243 884250 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 884502 884509 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 884587 884594 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII + 888751 888758 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII + 888751 888758 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII - 888785 888792 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXIII - 888785 888792 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 920104 920111 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 920116 920123 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 920913 920920 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 930944 930951 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII + 953162 953169 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII + 953162 953169 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV - 956882 956889 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV - 960334 960341 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII - 976160 976167 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 1000393 1000400 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV + 1004107 1004114 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVII + 1004133 1004140 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV + 1004319 1004326 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 1013732 1013739 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV + 1017104 1017111 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII + 1019115 1019122 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXII - 1028429 1028436 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV + 1028852 1028859 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrXV + 1070982 1070989 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 1201848 1201855 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 1305767 1305774 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 1402814 1402821 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV + 1451030 1451037 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 1451131 1451138 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV + 1461689 1461696 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrIV - 1489435 1489442 5.32e-05 0.113 GAAAAAAA
GAAAHAAA DREME-23 chrVI - 65320 65327 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXI + 74723 74730 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXI - 74842 74849 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXVI + 76517 76524 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXVI + 110028 110035 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrVII - 110447 110454 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrVIII - 116350 116357 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrIV + 118751 118758 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrIV + 118751 118758 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXIII + 131815 131822 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrX - 140180 140187 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrX - 140180 140187 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrI - 142597 142604 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrII + 165368 165375 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrVII - 205397 205404 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXI + 219723 219730 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXIV - 234703 234710 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrVII - 255207 255214 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXVI - 281810 281817 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXIV - 302408 302415 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrIV + 331578 331585 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrIX - 336420 336427 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXVI + 340672 340679 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrX + 354209 354216 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrX - 355446 355453 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrIV - 358230 358237 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXII + 369512 369519 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrX + 374496 374503 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrVIII - 385986 385993 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrVII + 401596 401603 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrII - 405950 405957 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrII - 405950 405957 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXV - 411262 411269 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXV - 411262 411269 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrIV + 411422 411429 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrV - 469421 469428 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrII + 479267 479274 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrII + 479267 479274 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrVII - 555405 555412 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrIV - 568954 568961 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrII - 645244 645251 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrII + 681886 681893 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXIII - 733381 733388 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXIII - 754507 754514 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXIII - 756466 756473 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXIV + 764339 764346 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXVI - 769164 769171 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXII + 780991 780998 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXII - 781915 781922 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrVII - 921109 921116 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrVII - 921109 921116 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXII + 924790 924797 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXII + 924790 924797 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXV - 980822 980829 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXV - 1015376 1015383 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXII - 1018938 1018945 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrXV + 1028965 1028972 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrIV - 1075670 1075677 8.55e-05 0.153 GAAACAAA
GAAAHAAA DREME-23 chrIV - 1451148 1451155 8.55e-05 0.153 GAAACAAA
DEBUGGING INFORMATION

Command line: 

/software/meme/4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HAA1/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HAA1/background --motif GAAAHAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HAA1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HAA1/BY4742--HAA1.fa

Settings: 


  

    output_directory = /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HAA1/fimo_out_17
    MEME file name = /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HAA1/dreme_out/dreme.xml
    sequence file name = /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HAA1/BY4742--HAA1.fa
  
  

    background file name = /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--HAA1/background
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = true
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 1

This information can be useful in the event you wish to report a problem with the FIMO software.

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