Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.017237 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.056417 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.073923 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.014174 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.06628 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background Finished invoke: name: bg status: 0 time: 0.012684 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 861.884972 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/seqs-shuffled Finished invoke: name: dreme status: 0 time: 118.075936 Invoking: centrimo -seqlen 430 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.178484 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.576035 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary AAYCDKRAGRTCMBSGGTTCGAYYCCSV /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.467323 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary GGCCNAGTBGGTWAAGSSVYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.412733 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary RWRRTGTAYGGRTGT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.405096 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary CCTTAVC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.308388 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary AAGAAAD /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.379291 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.253296 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.239009 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo8 status: 0 time: 0.222372 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary KAATCATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo9 status: 0 time: 0.242137 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary ATAYAACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo10 status: 0 time: 0.233682 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary ATCTTYTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo11 status: 0 time: 0.24424 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary CCGTGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo12 status: 0 time: 0.23783 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary GTGGTYTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo13 status: 0 time: 0.2574 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary TAGTGTAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo14 status: 0 time: 0.214081 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary CTGAGCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo15 status: 0 time: 0.193402 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary MACACCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo16 status: 0 time: 0.220166 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary ACTSACG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo17 status: 0 time: 0.262637 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_18 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary CAGWTAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo18 status: 0 time: 0.204291 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_19 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary ATGGTCAS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo19 status: 0 time: 0.219785 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_20 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary CCAGWTCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo20 status: 0 time: 0.26221 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/spamo_out_21 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background -primary CKTTGGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml Finished invoke: name: spamo21 status: 0 time: 0.242225 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif AAYCDKRAGRTCMBSGGTTCGAYYCCSV /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo1 status: 0 time: 0.27626 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif GGCCNAGTBGGTWAAGSSVYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo2 status: 0 time: 0.26569 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif RWRRTGTAYGGRTGT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo3 status: 0 time: 0.265022 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif CCTTAVC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo4 status: 0 time: 0.171505 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif AAGAAAD /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo5 status: 0 time: 0.156682 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo6 status: 0 time: 0.176847 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo7 status: 0 time: 0.172509 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif GTGATAGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo8 status: 0 time: 0.17162 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif KAATCATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo9 status: 0 time: 0.172229 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif ATAYAACA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo10 status: 0 time: 0.172941 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif ATCTTYTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo11 status: 0 time: 0.174166 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif CCGTGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo12 status: 0 time: 0.170918 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif GTGGTYTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo13 status: 0 time: 0.169836 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif TAGTGTAR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo14 status: 0 time: 0.175583 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif CTGAGCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo15 status: 0 time: 0.169938 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif MACACCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo16 status: 0 time: 0.178488 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif ACTSACG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo17 status: 0 time: 0.171265 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_18 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif CAGWTAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo18 status: 0 time: 0.175045 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_19 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif ATGGTCAS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo19 status: 0 time: 0.172089 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_20 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif CCAGWTCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo20 status: 0 time: 0.171425 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/fimo_out_21 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/background --motif CKTTGGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/BY4742--CUP9.fa Finished invoke: name: fimo21 status: 0 time: 0.172481 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CUP9/summary.tsv Finished invoke: name: summary status: 0 time: 0.177209 Done