Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.026712
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.05736
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.074973
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.014361
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.068399
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background
Finished invoke:
  name: bg  status: 0  time: 0.012533
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 925.176237
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 134.443333
Invoking:
  centrimo -seqlen 450 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.46577
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.702888
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary BKTGGCCSAGTBGKTWRRGSG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.492927
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary RAGRTYMBGGGTTCGANYCCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.506329
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary SAMARCSKSMYGTGMTARCCRYTACACTAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.342551
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary TGTAYGGR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.259434
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary BTAAGGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.28977
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.253118
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary AGAARA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.434038
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary TAGTGGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.268041
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary CAWAACCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.238045
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.383375
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.260795
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary TTACRTAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.455088
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary ATTAASAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.264166
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary CTCTCSCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.230774
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary GCKTCTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.23055
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary AGATCGKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo16  status: 0  time: 0.269432
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary ATSTGTTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo17  status: 0  time: 0.252831
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_18 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary CGCGGGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo18  status: 0  time: 0.353342
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_19 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary ATGGCAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo19  status: 0  time: 0.257813
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_20 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary GATGATRA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo20  status: 0  time: 0.21243
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_21 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary ACTGAGCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo21  status: 0  time: 0.222835
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_22 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary GRCCACGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo22  status: 0  time: 0.244052
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/spamo_out_23 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -primary GTGGAGAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml
Finished invoke:
  name: spamo23  status: 0  time: 0.239003
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif BKTGGCCSAGTBGKTWRRGSG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.323715
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif RAGRTYMBGGGTTCGANYCCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.307648
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif SAMARCSKSMYGTGMTARCCRYTACACTAT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.531792
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif TGTAYGGR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.214474
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif BTAAGGCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.224235
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.229254
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif AGAARA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.202353
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif TAGTGGTW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.240477
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif CAWAACCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.23611
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif CRCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.208553
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif CTATCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.234411
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif TTACRTAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.225062
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif ATTAASAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.258539
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif CTCTCSCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.224764
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif GCKTCTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.230393
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif AGATCGKG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo16  status: 0  time: 0.230142
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif ATSTGTTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo17  status: 0  time: 0.228587
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_18 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif CGCGGGSA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo18  status: 0  time: 0.232835
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_19 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif ATGGCAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo19  status: 0  time: 0.231441
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_20 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif GATGATRA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo20  status: 0  time: 0.228627
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_21 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif ACTGAGCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo21  status: 0  time: 0.224576
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_22 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif GRCCACGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo22  status: 0  time: 0.435934
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/fimo_out_23 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background --motif GTGGAGAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/BY4742--CIN5.fa
Finished invoke:
  name: fimo23  status: 0  time: 0.224712
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.248519
Done