******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:60800-61278 1.0000 100 chrXVI:338698-339111 1.0000 100 chrXI:163410-163571 1.0000 100 chrV:61162-62150 1.0000 100 chrVII:882463-883418 1.0000 100 chrXII:5421-5950 1.0000 100 chrII:36206-36610 1.0000 100 chrII:235360-235810 1.0000 100 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chrVII:738930-739368 1.0000 100 chrXI:326150-326806 1.0000 100 chrVII:682134-682548 1.0000 100 chrVIII:411162-411581 1.0000 100 chrI:72085-72604 1.0000 100 chrXII:426938-427393 1.0000 100 chrX:75327-75427 1.0000 100 chrXV:109524-110136 1.0000 100 chrXII:875192-875630 1.0000 100 chrX:233731-233831 1.0000 100 chrVII:479940-480768 1.0000 100 chrXIV:442809-443361 1.0000 100 chrVIII:80196-80646 1.0000 100 chrV:122929-123220 1.0000 100 chrIII:142573-143023 1.0000 100 chrXII:390514-390959 1.0000 100 chrIV:599759-600089 1.0000 100 chrVII:794223-794632 1.0000 100 chrXVI:281470-281949 1.0000 100 chrXI:440070-440220 1.0000 100 chrVIII:452554-452933 1.0000 100 chrVIII:148913-149322 1.0000 100 chrXII:498490-498998 1.0000 100 chrX:464927-465027 1.0000 100 chrXI:488-986 1.0000 100 chrVII:612078-612528 1.0000 100 chrIV:1468318-1468586 1.0000 100 chrII:256821-256992 1.0000 100 chrXI:361937-362387 1.0000 100 chrXII:737755-738063 1.0000 100 chrXI:518882-519173 1.0000 100 chrIX:68175-68562 1.0000 100 chrVII:371201-371521 1.0000 100 chrXVI:769029-769506 1.0000 100 chrXI:490775-491169 1.0000 100 chrV:487188-487586 1.0000 100 chrXI:109657-109879 1.0000 100 chrXV:960232-960682 1.0000 100 chrXIV:240076-240242 1.0000 100 chrXV:161754-162014 1.0000 100 chrXIII:914865-915304 1.0000 100 chrI:143187-143528 1.0000 100 chrXVI:431729-432118 1.0000 100 chrXIV:499300-499645 1.0000 100 chrVII:648928-649395 1.0000 100 chrIV:520756-521190 1.0000 100 chrIV:1461540-1462059 1.0000 100 chrXIII:20615-20824 1.0000 100 chrVI:162022-162422 1.0000 100 chrXI:431979-432429 1.0000 100 chrXI:379486-379895 1.0000 100 chrV:225470-225651 1.0000 100 chrVII:845431-845920 1.0000 100 chrXIV:234139-234589 1.0000 100 chrXIII:540407-540664 1.0000 100 chrXV:505094-505522 1.0000 100 chrV:58759-59209 1.0000 100 chrVII:828476-829004 1.0000 100 chrXII:962841-963249 1.0000 100 chrXV:117488-117938 1.0000 100 chrV:303148-303275 1.0000 100 chrXV:903938-904689 1.0000 100 chrVII:968745-969216 1.0000 100 chrXII:953163-953383 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 581 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 58100 N= 581 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.301 C 0.199 G 0.199 T 0.301 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CIN5/background): A 0.310 C 0.190 G 0.190 T 0.310 ******************************************************************************** ******************************************************************************** MOTIF BKTGGCCSAGTBGKTWRRGSG MEME-1 width = 21 sites = 99 llr = 1677 E-value = 6.1e-334 ******************************************************************************** -------------------------------------------------------------------------------- Motif BKTGGCCSAGTBGKTWRRGSG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 12:2:::2a2::::17551:: pos.-specific C 4::::964::12::2:12:63 probability G 33:8a:22:8:4a6::43946 matrix T 35a::121::94:47311::: bits 2.4 * * 2.2 * * 1.9 ** * * 1.7 * ** * * * Relative 1.4 **** *** * ** Entropy 1.2 **** *** ** *** (24.4 bits) 1.0 ***** *** ** *** 0.7 ***** *** **** *** 0.5 ******* ********* *** 0.2 ********************* 0.0 --------------------- Multilevel CTTGGCCCAGTTGGTAAAGCG consensus GG A GG G T TGG GC sequence TA A C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BKTGGCCSAGTBGKTWRRGSG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXIII:259008-259444 - 38 2.34e-11 AGTATGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrII:226868-227360 + 16 2.34e-11 AACGAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrX:523862-523962 - 35 2.34e-11 TTAAAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrVIII:132883-133330 - 26 2.34e-11 TAAGTGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrI:182378-182822 - 28 2.34e-11 ATTTTGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:437577-437988 + 45 2.34e-11 AGTAAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:1305436-1305876 + 29 2.34e-11 ATTAAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrIV:980816-981260 - 42 2.34e-11 ATTGAGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrXII:167801-168222 - 39 2.34e-11 CATATGGCAA CTTGGCCGAGTGGTTAAGGCG AAAGATTAGA chrVII:794223-794632 + 45 6.74e-11 ATTGCGGGCA CATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrXII:214749-215150 - 31 6.74e-11 TTTTAGGGCA CATGGCGCAGTTGGTAGCGCG CTTCCCTTGC chrVII:738930-739368 + 28 8.16e-11 AAATAGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXVI:880102-880561 - 63 8.16e-11 ATAATGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrIX:210446-210919 + 38 8.16e-11 TATCTGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXIV:569743-570118 - 35 8.16e-11 ACAGTGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrXII:1051944-1052337 - 29 8.16e-11 TTCATGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrV:551146-551538 - 41 8.16e-11 TTACAGGTCT CTTGGCCCAGTTGGTTAAGGC ACCGTGCTAA chrV:443087-443511 - 1 8.16e-11 AATTTGGTCT CTTGGCCCAGTTGGTTAAGGC chrXV:353854-354315 - 54 3.77e-10 TTACTGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrIII:295283-295775 + 10 3.77e-10 TTAAGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXIV:560507-560969 - 52 3.77e-10 AACGGGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrIX:174837-175308 + 14 3.77e-10 TACGAGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrXIV:104607-105111 + 1 3.77e-10 . TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrIV:434015-434551 - 78 3.77e-10 TC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrX:58962-59062 - 32 3.77e-10 TAGAAGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrII:266185-266657 + 12 3.77e-10 AAACTGCTTC TATGGCCAAGTTGGTAAGGCG CCACACTAGT chrIII:227748-228199 + 24 4.39e-10 GAAATGGCAC TATGGCCGAGTGGTTAAGGCG AGAGACTCGA chrV:288268-288720 - 55 4.39e-10 TGATAGGCAC TATGGCCGAGTGGTTAAGGCG ACAGACTTGA chrXIII:480435-480882 - 60 5.90e-10 AAGTAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:122088-122529 + 16 5.90e-10 AATTAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:876195-876659 + 22 5.90e-10 GAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrIX:300093-300503 - 27 5.90e-10 AAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrXVI:581858-582311 + 33 5.90e-10 AAAGAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrV:435621-436039 - 19 5.90e-10 TAAGAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrXI:202782-203258 + 34 5.90e-10 TAAAAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrV:135204-135707 - 67 5.90e-10 AAAAAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVII:185541-185972 - 55 5.90e-10 AAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrVI:226531-226946 - 47 5.90e-10 AAAATGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrX:414777-414877 + 26 5.90e-10 AATTAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrIV:1201543-1202024 + 22 5.90e-10 AAATAGCCTT GTTGGCGCAATCGGTAGCGCG TATGACTCTT chrXI:517784-518163 + 70 9.01e-10 ACTATGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrX:197154-197254 - 44 9.01e-10 TATTAGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrVI:204793-205192 - 29 9.01e-10 CGTTCGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXI:219691-220125 + 42 9.01e-10 AAATAGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXII:656764-657197 - 51 9.01e-10 AAATTGGGCG TGTGGCGTAGTCGGTAGCGCG CTCCCTTAGC chrXVI:769029-769506 - 60 1.18e-09 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXII:875192-875630 + 20 1.18e-09 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrVII:115295-115773 + 9 1.18e-09 TCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXV:438445-438918 + 17 1.18e-09 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXI:578769-579255 + 8 1.18e-09 CATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrIV:359381-359845 + 19 1.18e-09 ACTCATCCTT GTTAGCTCAGTTGGTAGAGCG TTCGGCTTTT chrXV:274469-274925 + 31 1.18e-09 ATCGTGTCCC AGTGGCCGAGTGGTTAAGGCG ATGCCCTGCT chrXII:592373-592821 - 47 1.53e-09 ACAATGGGAG TTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrX:617718-617818 + 30 1.53e-09 ACAATGGGAG TTTGGCCGAGTGGTTTAAGGC GTCAGATTTA chrXV:228126-228567 + 40 1.74e-09 TATTAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXIV:102519-102919 + 52 1.74e-09 TATAAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXVI:810447-810879 + 68 1.74e-09 TTTGCGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXV:487240-487695 + 27 1.74e-09 AGTTAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrIII:127527-127910 + 53 1.74e-09 AAAATGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXIV:632406-632830 + 36 1.74e-09 AAAGTGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXII:975826-976233 - 52 1.74e-09 TAAAAGACTC CATGGCCAAGTTGGTTAAGGC GTGCGACTGT chrXII:962841-963249 - 35 3.20e-09 TCGACGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrII:9384-9823 + 35 3.20e-09 TTCGTGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrIV:519530-519935 + 66 3.20e-09 TTTACGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXI:84007-84425 + 47 3.20e-09 TGTATGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXIV:725975-726419 - 45 3.20e-09 TCTTTGGAGG GTTGGCCGAGTGGTCTAAGGC GGCAGACTTA chrXI:490775-491169 + 51 7.01e-09 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrX:233731-233831 + 48 7.01e-09 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrIV:619783-620238 - 56 7.01e-09 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrXV:340119-340561 - 56 7.01e-09 ATCTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrXII:374154-374645 + 11 7.01e-09 TCTTGTTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrV:492192-492622 - 42 7.01e-09 TCCTATTCCT CGTGGCCCAATGGTCACGGCG TCTGGCTACG chrXIV:374681-375091 + 38 1.18e-08 AATAAGCGGA CTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrVIII:237686-238153 - 45 2.30e-08 AGTAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrXIII:352072-352505 + 47 2.30e-08 TATAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrII:36206-36610 + 45 2.30e-08 TGTAAGCGGA TTTAGCTCAGTTGGGAGAGCG CCAGACTGAA chrIV:1461540-1462059 - 55 4.67e-08 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrXI:458354-458858 + 6 4.67e-08 GGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrVII:857227-857673 - 66 4.67e-08 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrXII:628177-628667 + 16 4.67e-08 TAAGTGGTTG TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrI:180951-181439 + 1 4.67e-08 . TTTGGCCGAGCGGTCTAAGGC GCCTGATTCA chrXI:379486-379895 + 45 1.31e-07 TAATAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVII:412126-412560 - 49 1.31e-07 AAACTGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrV:438504-438901 + 53 1.31e-07 AATTAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrX:378158-378258 + 42 1.31e-07 TAATAGGTTT CGTGGTCTAGTCGGTTATGGC ATCTGCTTAA chrVI:167251-167667 + 33 2.16e-07 AACGACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrIV:946091-946600 + 22 2.16e-07 ATCGACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrXIII:837711-838126 + 65 2.16e-07 ATTGACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrVI:210476-210899 - 45 2.16e-07 AACGACTCTC GGTAGCCAAGTTGGTTTAAGG CGCAAGACTG chrIV:1175628-1176074 + 33 3.92e-07 ACAAAGCTTC AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrXIII:572704-573149 - 54 3.92e-07 AGACAGCTTC AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrXV:976199-976677 + 38 3.92e-07 TGTGCGCTTC AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrX:390875-390975 - 19 3.92e-07 ATAGTGCTTC AGTAGCTCAGTAGGAAGAGCG TCAGTCTCAT chrVII:780462-780835 - 38 5.26e-06 CTGGTCTGTT CTTGGCGATGACGTAAGCGGC GGATAAACCT chrIV:520756-521190 + 54 1.14e-05 TTTAGGGTCC TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrII:350624-351027 + 57 1.14e-05 AAAAGGGTTT TATAGTGTAGTGGTTATCACT TTCGGTTTTG chrXV:594217-594637 - 23 1.32e-05 GAAACGCGCA AGTGGTTCAGTGGTTAGAATT TATGCTTCCC chrVII:828476-829004 - 79 2.56e-05 G CGTGGCGTAATGGCAACGCGT CTGACTTCTA chrVII:110453-110895 - 47 3.16e-05 TACCTGCCAT CTTAGTATAGTGGTTAGTACA CATCGTTGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BKTGGCCSAGTBGKTWRRGSG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXIII:259008-259444 2.3e-11 37_[-1]_42 chrII:226868-227360 2.3e-11 15_[+1]_64 chrX:523862-523962 2.3e-11 34_[-1]_45 chrVIII:132883-133330 2.3e-11 25_[-1]_54 chrI:182378-182822 2.3e-11 27_[-1]_52 chrIV:437577-437988 2.3e-11 44_[+1]_35 chrIV:1305436-1305876 2.3e-11 28_[+1]_51 chrIV:980816-981260 2.3e-11 41_[-1]_38 chrXII:167801-168222 2.3e-11 38_[-1]_41 chrVII:794223-794632 6.7e-11 44_[+1]_35 chrXII:214749-215150 6.7e-11 30_[-1]_49 chrVII:738930-739368 8.2e-11 27_[+1]_52 chrXVI:880102-880561 8.2e-11 62_[-1]_17 chrIX:210446-210919 8.2e-11 37_[+1]_42 chrXIV:569743-570118 8.2e-11 34_[-1]_45 chrXII:1051944-1052337 8.2e-11 28_[-1]_51 chrV:551146-551538 8.2e-11 40_[-1]_39 chrV:443087-443511 8.2e-11 [-1]_79 chrXV:353854-354315 3.8e-10 53_[-1]_26 chrIII:295283-295775 3.8e-10 9_[+1]_70 chrXIV:560507-560969 3.8e-10 51_[-1]_28 chrIX:174837-175308 3.8e-10 13_[+1]_66 chrXIV:104607-105111 3.8e-10 [+1]_79 chrIV:434015-434551 3.8e-10 77_[-1]_2 chrX:58962-59062 3.8e-10 31_[-1]_48 chrII:266185-266657 3.8e-10 11_[+1]_68 chrIII:227748-228199 4.4e-10 23_[+1]_56 chrV:288268-288720 4.4e-10 54_[-1]_25 chrXIII:480435-480882 5.9e-10 59_[-1]_20 chrVII:122088-122529 5.9e-10 15_[+1]_64 chrVII:876195-876659 5.9e-10 21_[+1]_58 chrIX:300093-300503 5.9e-10 26_[-1]_53 chrXVI:581858-582311 5.9e-10 32_[+1]_47 chrV:435621-436039 5.9e-10 18_[-1]_61 chrXI:202782-203258 5.9e-10 33_[+1]_46 chrV:135204-135707 5.9e-10 66_[-1]_13 chrVII:185541-185972 5.9e-10 54_[-1]_25 chrVI:226531-226946 5.9e-10 46_[-1]_33 chrX:414777-414877 5.9e-10 25_[+1]_54 chrIV:1201543-1202024 5.9e-10 21_[+1]_58 chrXI:517784-518163 9e-10 69_[+1]_10 chrX:197154-197254 9e-10 43_[-1]_36 chrVI:204793-205192 9e-10 28_[-1]_51 chrXI:219691-220125 9e-10 41_[+1]_38 chrXII:656764-657197 9e-10 50_[-1]_29 chrXVI:769029-769506 1.2e-09 59_[-1]_20 chrXII:875192-875630 1.2e-09 19_[+1]_60 chrVII:115295-115773 1.2e-09 8_[+1]_71 chrXV:438445-438918 1.2e-09 16_[+1]_63 chrXI:578769-579255 1.2e-09 7_[+1]_72 chrIV:359381-359845 1.2e-09 18_[+1]_61 chrXV:274469-274925 1.2e-09 30_[+1]_49 chrXII:592373-592821 1.5e-09 46_[-1]_33 chrX:617718-617818 1.5e-09 29_[+1]_50 chrXV:228126-228567 1.7e-09 39_[+1]_40 chrXIV:102519-102919 1.7e-09 51_[+1]_28 chrXVI:810447-810879 1.7e-09 67_[+1]_12 chrXV:487240-487695 1.7e-09 26_[+1]_53 chrIII:127527-127910 1.7e-09 52_[+1]_27 chrXIV:632406-632830 1.7e-09 35_[+1]_44 chrXII:975826-976233 1.7e-09 51_[-1]_28 chrXII:962841-963249 3.2e-09 34_[-1]_45 chrII:9384-9823 3.2e-09 34_[+1]_45 chrIV:519530-519935 3.2e-09 65_[+1]_14 chrXI:84007-84425 3.2e-09 46_[+1]_33 chrXIV:725975-726419 3.2e-09 44_[-1]_35 chrXI:490775-491169 7e-09 50_[+1]_29 chrX:233731-233831 7e-09 47_[+1]_32 chrIV:619783-620238 7e-09 55_[-1]_24 chrXV:340119-340561 7e-09 55_[-1]_24 chrXII:374154-374645 7e-09 10_[+1]_69 chrV:492192-492622 7e-09 41_[-1]_38 chrXIV:374681-375091 1.2e-08 37_[+1]_42 chrVIII:237686-238153 2.3e-08 44_[-1]_35 chrXIII:352072-352505 2.3e-08 46_[+1]_33 chrII:36206-36610 2.3e-08 44_[+1]_35 chrIV:1461540-1462059 4.7e-08 54_[-1]_25 chrXI:458354-458858 4.7e-08 5_[+1]_74 chrVII:857227-857673 4.7e-08 65_[-1]_14 chrXII:628177-628667 4.7e-08 15_[+1]_64 chrI:180951-181439 4.7e-08 [+1]_79 chrXI:379486-379895 1.3e-07 44_[+1]_35 chrVII:412126-412560 1.3e-07 48_[-1]_31 chrV:438504-438901 1.3e-07 52_[+1]_27 chrX:378158-378258 1.3e-07 41_[+1]_38 chrVI:167251-167667 2.2e-07 32_[+1]_47 chrIV:946091-946600 2.2e-07 21_[+1]_58 chrXIII:837711-838126 2.2e-07 64_[+1]_15 chrVI:210476-210899 2.2e-07 44_[-1]_35 chrIV:1175628-1176074 3.9e-07 32_[+1]_47 chrXIII:572704-573149 3.9e-07 53_[-1]_26 chrXV:976199-976677 3.9e-07 37_[+1]_42 chrX:390875-390975 3.9e-07 18_[-1]_61 chrVII:780462-780835 5.3e-06 37_[-1]_42 chrIV:520756-521190 1.1e-05 53_[+1]_26 chrII:350624-351027 1.1e-05 56_[+1]_23 chrXV:594217-594637 1.3e-05 22_[-1]_57 chrVII:828476-829004 2.6e-05 78_[-1]_1 chrVII:110453-110895 3.2e-05 46_[-1]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BKTGGCCSAGTBGKTWRRGSG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BKTGGCCSAGTBGKTWRRGSG width=21 seqs=99 chrXIII:259008-259444 ( 38) CTTGGCCGAGTGGTTAAGGCG 1 chrII:226868-227360 ( 16) CTTGGCCGAGTGGTTAAGGCG 1 chrX:523862-523962 ( 35) CTTGGCCGAGTGGTTAAGGCG 1 chrVIII:132883-133330 ( 26) CTTGGCCGAGTGGTTAAGGCG 1 chrI:182378-182822 ( 28) CTTGGCCGAGTGGTTAAGGCG 1 chrIV:437577-437988 ( 45) CTTGGCCGAGTGGTTAAGGCG 1 chrIV:1305436-1305876 ( 29) CTTGGCCGAGTGGTTAAGGCG 1 chrIV:980816-981260 ( 42) CTTGGCCGAGTGGTTAAGGCG 1 chrXII:167801-168222 ( 39) CTTGGCCGAGTGGTTAAGGCG 1 chrVII:794223-794632 ( 45) CATGGCGCAGTTGGTAGCGCG 1 chrXII:214749-215150 ( 31) CATGGCGCAGTTGGTAGCGCG 1 chrVII:738930-739368 ( 28) CTTGGCCCAGTTGGTTAAGGC 1 chrXVI:880102-880561 ( 63) CTTGGCCCAGTTGGTTAAGGC 1 chrIX:210446-210919 ( 38) CTTGGCCCAGTTGGTTAAGGC 1 chrXIV:569743-570118 ( 35) CTTGGCCCAGTTGGTTAAGGC 1 chrXII:1051944-1052337 ( 29) CTTGGCCCAGTTGGTTAAGGC 1 chrV:551146-551538 ( 41) CTTGGCCCAGTTGGTTAAGGC 1 chrV:443087-443511 ( 1) CTTGGCCCAGTTGGTTAAGGC 1 chrXV:353854-354315 ( 54) TATGGCCAAGTTGGTAAGGCG 1 chrIII:295283-295775 ( 10) TATGGCCAAGTTGGTAAGGCG 1 chrXIV:560507-560969 ( 52) TATGGCCAAGTTGGTAAGGCG 1 chrIX:174837-175308 ( 14) TATGGCCAAGTTGGTAAGGCG 1 chrXIV:104607-105111 ( 1) TATGGCCAAGTTGGTAAGGCG 1 chrIV:434015-434551 ( 78) TATGGCCAAGTTGGTAAGGCG 1 chrX:58962-59062 ( 32) TATGGCCAAGTTGGTAAGGCG 1 chrII:266185-266657 ( 12) TATGGCCAAGTTGGTAAGGCG 1 chrIII:227748-228199 ( 24) TATGGCCGAGTGGTTAAGGCG 1 chrV:288268-288720 ( 55) TATGGCCGAGTGGTTAAGGCG 1 chrXIII:480435-480882 ( 60) GTTGGCGCAATCGGTAGCGCG 1 chrVII:122088-122529 ( 16) GTTGGCGCAATCGGTAGCGCG 1 chrVII:876195-876659 ( 22) GTTGGCGCAATCGGTAGCGCG 1 chrIX:300093-300503 ( 27) GTTGGCGCAATCGGTAGCGCG 1 chrXVI:581858-582311 ( 33) GTTGGCGCAATCGGTAGCGCG 1 chrV:435621-436039 ( 19) GTTGGCGCAATCGGTAGCGCG 1 chrXI:202782-203258 ( 34) GTTGGCGCAATCGGTAGCGCG 1 chrV:135204-135707 ( 67) GTTGGCGCAATCGGTAGCGCG 1 chrVII:185541-185972 ( 55) GTTGGCGCAATCGGTAGCGCG 1 chrVI:226531-226946 ( 47) GTTGGCGCAATCGGTAGCGCG 1 chrX:414777-414877 ( 26) GTTGGCGCAATCGGTAGCGCG 1 chrIV:1201543-1202024 ( 22) GTTGGCGCAATCGGTAGCGCG 1 chrXI:517784-518163 ( 70) TGTGGCGTAGTCGGTAGCGCG 1 chrX:197154-197254 ( 44) TGTGGCGTAGTCGGTAGCGCG 1 chrVI:204793-205192 ( 29) TGTGGCGTAGTCGGTAGCGCG 1 chrXI:219691-220125 ( 42) TGTGGCGTAGTCGGTAGCGCG 1 chrXII:656764-657197 ( 51) TGTGGCGTAGTCGGTAGCGCG 1 chrXVI:769029-769506 ( 60) GTTAGCTCAGTTGGTAGAGCG 1 chrXII:875192-875630 ( 20) GTTAGCTCAGTTGGTAGAGCG 1 chrVII:115295-115773 ( 9) GTTAGCTCAGTTGGTAGAGCG 1 chrXV:438445-438918 ( 17) GTTAGCTCAGTTGGTAGAGCG 1 chrXI:578769-579255 ( 8) GTTAGCTCAGTTGGTAGAGCG 1 chrIV:359381-359845 ( 19) GTTAGCTCAGTTGGTAGAGCG 1 chrXV:274469-274925 ( 31) AGTGGCCGAGTGGTTAAGGCG 1 chrXII:592373-592821 ( 47) TTTGGCCGAGTGGTTTAAGGC 1 chrX:617718-617818 ( 30) TTTGGCCGAGTGGTTTAAGGC 1 chrXV:228126-228567 ( 40) CATGGCCAAGTTGGTTAAGGC 1 chrXIV:102519-102919 ( 52) CATGGCCAAGTTGGTTAAGGC 1 chrXVI:810447-810879 ( 68) CATGGCCAAGTTGGTTAAGGC 1 chrXV:487240-487695 ( 27) CATGGCCAAGTTGGTTAAGGC 1 chrIII:127527-127910 ( 53) CATGGCCAAGTTGGTTAAGGC 1 chrXIV:632406-632830 ( 36) CATGGCCAAGTTGGTTAAGGC 1 chrXII:975826-976233 ( 52) CATGGCCAAGTTGGTTAAGGC 1 chrXII:962841-963249 ( 35) GTTGGCCGAGTGGTCTAAGGC 1 chrII:9384-9823 ( 35) GTTGGCCGAGTGGTCTAAGGC 1 chrIV:519530-519935 ( 66) GTTGGCCGAGTGGTCTAAGGC 1 chrXI:84007-84425 ( 47) GTTGGCCGAGTGGTCTAAGGC 1 chrXIV:725975-726419 ( 45) GTTGGCCGAGTGGTCTAAGGC 1 chrXI:490775-491169 ( 51) CGTGGCCCAATGGTCACGGCG 1 chrX:233731-233831 ( 48) CGTGGCCCAATGGTCACGGCG 1 chrIV:619783-620238 ( 56) CGTGGCCCAATGGTCACGGCG 1 chrXV:340119-340561 ( 56) CGTGGCCCAATGGTCACGGCG 1 chrXII:374154-374645 ( 11) CGTGGCCCAATGGTCACGGCG 1 chrV:492192-492622 ( 42) CGTGGCCCAATGGTCACGGCG 1 chrXIV:374681-375091 ( 38) CTTAGCTCAGTTGGGAGAGCG 1 chrVIII:237686-238153 ( 45) TTTAGCTCAGTTGGGAGAGCG 1 chrXIII:352072-352505 ( 47) TTTAGCTCAGTTGGGAGAGCG 1 chrII:36206-36610 ( 45) TTTAGCTCAGTTGGGAGAGCG 1 chrIV:1461540-1462059 ( 55) TTTGGCCGAGCGGTCTAAGGC 1 chrXI:458354-458858 ( 6) TTTGGCCGAGCGGTCTAAGGC 1 chrVII:857227-857673 ( 66) TTTGGCCGAGCGGTCTAAGGC 1 chrXII:628177-628667 ( 16) TTTGGCCGAGCGGTCTAAGGC 1 chrI:180951-181439 ( 1) TTTGGCCGAGCGGTCTAAGGC 1 chrXI:379486-379895 ( 45) CGTGGTCTAGTCGGTTATGGC 1 chrVII:412126-412560 ( 49) CGTGGTCTAGTCGGTTATGGC 1 chrV:438504-438901 ( 53) CGTGGTCTAGTCGGTTATGGC 1 chrX:378158-378258 ( 42) CGTGGTCTAGTCGGTTATGGC 1 chrVI:167251-167667 ( 33) GGTAGCCAAGTTGGTTTAAGG 1 chrIV:946091-946600 ( 22) GGTAGCCAAGTTGGTTTAAGG 1 chrXIII:837711-838126 ( 65) GGTAGCCAAGTTGGTTTAAGG 1 chrVI:210476-210899 ( 45) GGTAGCCAAGTTGGTTTAAGG 1 chrIV:1175628-1176074 ( 33) AGTAGCTCAGTAGGAAGAGCG 1 chrXIII:572704-573149 ( 54) AGTAGCTCAGTAGGAAGAGCG 1 chrXV:976199-976677 ( 38) AGTAGCTCAGTAGGAAGAGCG 1 chrX:390875-390975 ( 19) AGTAGCTCAGTAGGAAGAGCG 1 chrVII:780462-780835 ( 38) CTTGGCGATGACGTAAGCGGC 1 chrIV:520756-521190 ( 54) TATAGTGTAGTGGTTATCACT 1 chrII:350624-351027 ( 57) TATAGTGTAGTGGTTATCACT 1 chrXV:594217-594637 ( 23) AGTGGTTCAGTGGTTAGAATT 1 chrVII:828476-829004 ( 79) CGTGGCGTAATGGCAACGCGT 1 chrVII:110453-110895 ( 47) CTTAGTATAGTGGTTAGTACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BKTGGCCSAGTBGKTWRRGSG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 46480 bayes= 6.74475 E= 6.1e-334 -235 105 52 -18 -55 -1327 47 76 -1327 -1327 -1327 169 -55 -1327 205 -1327 -1327 -1327 240 -1327 -1327 227 -1327 -194 -494 167 29 -103 -62 116 35 -124 167 -1327 -1327 -494 -69 -1327 209 -1327 -494 -191 -1327 160 -294 23 90 31 -1327 -1327 240 -1327 -1327 -423 174 19 -235 -23 -223 125 108 -1327 -1327 15 70 -143 94 -235 55 23 52 -262 -194 -423 226 -1327 -1327 172 94 -494 -494 72 174 -294 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BKTGGCCSAGTBGKTWRRGSG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 99 E= 6.1e-334 0.060606 0.393939 0.272727 0.272727 0.212121 0.000000 0.262626 0.525253 0.000000 0.000000 0.000000 1.000000 0.212121 0.000000 0.787879 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.919192 0.000000 0.080808 0.010101 0.606061 0.232323 0.151515 0.202020 0.424242 0.242424 0.131313 0.989899 0.000000 0.000000 0.010101 0.191919 0.000000 0.808081 0.000000 0.010101 0.050505 0.000000 0.939394 0.040404 0.222222 0.353535 0.383838 0.000000 0.000000 1.000000 0.000000 0.000000 0.010101 0.636364 0.353535 0.060606 0.161616 0.040404 0.737374 0.656566 0.000000 0.000000 0.343434 0.505051 0.070707 0.363636 0.060606 0.454545 0.222222 0.272727 0.050505 0.080808 0.010101 0.909091 0.000000 0.000000 0.626263 0.363636 0.010101 0.010101 0.313131 0.636364 0.040404 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BKTGGCCSAGTBGKTWRRGSG MEME-1 regular expression -------------------------------------------------------------------------------- [CGT][TGA]T[GA]GC[CG][CGA]AGT[TGC]G[GT]T[AT][AG][AGC]G[CG][GC] -------------------------------------------------------------------------------- Time 330.98 secs. ******************************************************************************** ******************************************************************************** MOTIF RAGRTYMBGGGTTCGANYCCC MEME-2 width = 21 sites = 75 llr = 1348 E-value = 1.5e-264 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAGRTYMBGGGTTCGANYCCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 57142:5:12::::3a2:::: pos.-specific C 111::6433::::a::25a86 probability G 4276::1468a:::7:3:::3 matrix T ::1:8413:::aa:::34:21 bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * ** * * Relative 1.4 ******* ** Entropy 1.2 * * ******** *** (25.9 bits) 1.0 *** * ******** **** 0.7 ***** ******** **** 0.5 ****** ********* **** 0.2 **************** **** 0.0 --------------------- Multilevel AAGGTCAGGGGTTCGAGCCCC consensus G A TCTC A TT G sequence C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTYMBGGGTTCGANYCCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrIII:123398-123829 - 24 1.06e-12 TAGGGTGCGG GAGGTCCCGGGTTCGAGTCCC GGCTCGCCCC chrXIII:480435-480882 - 23 2.21e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVII:122088-122529 + 53 2.21e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVII:876195-876659 + 59 2.21e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrXVI:581858-582311 + 70 2.21e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrXI:202782-203258 + 71 2.21e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGC chrV:135204-135707 - 30 2.21e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVII:185541-185972 - 18 2.21e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrVI:226531-226946 - 10 2.21e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGC chrX:414777-414877 + 63 2.21e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrIV:1201543-1202024 + 59 2.21e-12 TCTTAATCAT AAGGTTAGGGGTTCGAGCCCC CTACAGGGCT chrXII:875192-875630 + 80 4.01e-11 AGGATACCGA AATGTCAGGGGTTCGAGCCCC chrVII:115295-115773 + 69 4.01e-11 AGGATACCGA AATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrXV:438445-438918 + 77 4.01e-11 AGGATACCGA AATGTCAGGGGTTCGAGCCCC CTA chrXI:578769-579255 + 68 4.01e-11 AGGATACCGA AATGTCAGGGGTTCGAGCCCC CTATGAGGAG chrIV:359381-359845 + 79 4.01e-11 AGGATACCGA AATGTCAGGGGTTCGAGCCCC C chrVII:828476-829004 - 43 7.68e-11 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrV:138475-139017 + 11 7.68e-11 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrVII:405256-405748 + 59 7.68e-11 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrX:374251-374351 - 48 7.68e-11 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrVII:736116-736615 + 66 7.68e-11 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrII:405678-406198 + 31 7.68e-11 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrIV:568687-569207 + 26 7.68e-11 TTCTAATCAG AAGATTATGGGTTCGACCCCC ATCGTGAGTG chrVII:738930-739368 + 66 1.88e-10 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGAGACCA chrXVI:880102-880561 - 25 1.88e-10 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAGAGACCA chrIX:210446-210919 + 76 1.88e-10 TAATAACGCG GGGATCAGCGGTTCGATCCCG CTAG chrV:551146-551538 - 3 1.88e-10 TAATAACGCG GGGATCAGCGGTTCGATCCCG CT chrV:487188-487586 - 4 7.87e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGT chrVII:328371-328922 + 28 7.87e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrV:176898-177396 + 43 7.87e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrXIII:290606-291019 + 80 7.87e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC chrVII:541591-542162 + 65 7.87e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrXI:140825-141285 - 23 7.87e-10 CTTTCACCGT GGAGACCGGGGTTCGACTCCC CGTATCGGAG chrX:197154-197254 - 7 8.88e-10 TAGCATGGGA GAGGTCTCCGGTTCGATTCCG GACTCG chrXI:219691-220125 + 79 8.88e-10 TAGCATGGGA GAGGTCTCCGGTTCGATTCCG G chrVII:774156-774667 + 30 8.88e-10 TAGCATGGGA GAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrXII:656764-657197 - 14 8.88e-10 TAGCATGGGA GAGGTCTCCGGTTCGATTCCG GACTCGTCCA chrVIII:475468-475965 - 50 9.99e-10 TCACACGGCA AAGGTCCCGAGTTCGATCCTC GGTTGGAACA chrXV:110792-111233 - 10 2.44e-09 CTTCCAAGGT GGGGACACGGGTTCGATTCTC GTACCGCTC chrXV:353854-354315 - 17 3.01e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrIII:295283-295775 + 47 3.01e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrXIV:560507-560969 - 15 3.01e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrIX:174837-175308 + 51 3.01e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrXIV:104607-105111 + 38 3.01e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrIV:434015-434551 - 41 3.01e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrII:266185-266657 + 49 3.01e-09 TAGTAATGTG GAGATCATCGGTTCAAATCCG ATTGGAAGCA chrIV:488513-489084 - 59 3.33e-09 TTACACGGCG AAGATCCCGAGTTCGAACCTC GGTTGGATCA chrX:538355-538455 + 75 4.08e-09 TCCTAAGGAG AAGACTGCGGGTTCGAGTCCC GTACG chrV:467897-468129 - 42 8.75e-09 TAAATACTCG CGGGATTCGGGTTCGAGCCCC GATAGGGGCC chrXII:448497-448916 - 4 1.61e-08 TTTTGATCCG GACAACCCCGGTTCGAATCCG GGT chrXV:228126-228567 + 78 2.24e-08 TGTTAATCGC AAGATCGTGAGTTCAACCCTC AC chrXV:487240-487695 + 65 2.24e-08 TGTTAATCGC AAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrXIV:632406-632830 + 74 2.24e-08 TGTTAATCGC AAGATCGTGAGTTCAACCCTC ACTGGG chrXII:975826-976233 - 14 2.24e-08 TGTTAATCGC AAGATCGTGAGTTCAACCCTC ACTGGGGTCG chrIV:1175628-1176074 + 70 2.85e-08 TCATAATCTG AAGGTCGAGAGTTCGAACCTC CCCTGGAGCA chrXIII:572704-573149 - 17 2.85e-08 TCATAATCTG AAGGTCGAGAGTTCGAACCTC CCCTGGAGCA chrXV:976199-976677 + 75 2.85e-08 TCATAATCTG AAGGTCGAGAGTTCGAACCTC CCCTG chrVII:412126-412560 - 11 3.87e-08 TAACACGCAG AACGTCCCCAGTTCGATCCTG GGCGAAATCA chrV:469257-469685 + 79 3.87e-08 TAACACGCAG AACGTCCCCAGTTCGATCCTG G chrX:378158-378258 + 80 3.87e-08 TAACACGCAG AACGTCCCCAGTTCGATCCTG chrVII:845431-845920 + 64 4.48e-08 TTGCCATCGT TGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrX:531613-531713 + 26 4.48e-08 TTGCCATCGT TGGGCCCCCGGTTCGATTCCG GGCTTGCGCA chrIV:1095146-1095654 - 30 7.87e-08 AAGATATCTG GAGGTCCTGTGTTCGATCCAC AGAGTTCGCA chrIV:619783-620238 - 19 8.42e-08 TACGAACCAG AAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrXV:340119-340561 - 19 8.42e-08 TACGAACCAG AAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrXII:374154-374645 + 48 8.42e-08 TACGAACCAG AAGATTCCAGGTTCAAGTCCT GGCGGGGAAG chrV:492192-492622 - 5 8.42e-08 TACGAACCAG AAGATTCCAGGTTCAAGTCCT GGCG chrXII:426938-427393 + 58 8.99e-08 TTGTCGCGTG CCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrIX:336178-336608 - 16 8.99e-08 TTGTCGCGTG CCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrXV:571762-572178 + 79 8.99e-08 TTGTCGCGTG CCAGATCGGGGTTCAATTCCC C chrVII:544341-544858 - 38 8.99e-08 TTGTCGCGTG CCAGATCGGGGTTCAATTCCC CGTCGCGGAG chrX:541294-541394 + 78 8.99e-08 TTGTCGCGTG CCAGATCGGGGTTCAATTCCC CG chrIV:946091-946600 + 75 9.61e-08 ACGAAATCTT GAGATCGGGCGTTCGACTCGC CCCCG chrX:517658-517758 - 10 2.97e-07 TCATAACCCT GATGTCCTCGGATCGAAACCG AGCGGCGCT chrXVI:338698-339111 - 4 2.97e-07 TCATAACCCT GATGTCCTCGGATCGAAACCG AGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTYMBGGGTTCGANYCCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:123398-123829 1.1e-12 23_[-2]_56 chrXIII:480435-480882 2.2e-12 22_[-2]_57 chrVII:122088-122529 2.2e-12 52_[+2]_27 chrVII:876195-876659 2.2e-12 58_[+2]_21 chrXVI:581858-582311 2.2e-12 69_[+2]_10 chrXI:202782-203258 2.2e-12 70_[+2]_9 chrV:135204-135707 2.2e-12 29_[-2]_50 chrVII:185541-185972 2.2e-12 17_[-2]_62 chrVI:226531-226946 2.2e-12 9_[-2]_70 chrX:414777-414877 2.2e-12 62_[+2]_17 chrIV:1201543-1202024 2.2e-12 58_[+2]_21 chrXII:875192-875630 4e-11 79_[+2] chrVII:115295-115773 4e-11 68_[+2]_11 chrXV:438445-438918 4e-11 76_[+2]_3 chrXI:578769-579255 4e-11 67_[+2]_12 chrIV:359381-359845 4e-11 78_[+2]_1 chrVII:828476-829004 7.7e-11 42_[-2]_37 chrV:138475-139017 7.7e-11 10_[+2]_69 chrVII:405256-405748 7.7e-11 58_[+2]_21 chrX:374251-374351 7.7e-11 47_[-2]_32 chrVII:736116-736615 7.7e-11 65_[+2]_14 chrII:405678-406198 7.7e-11 30_[+2]_49 chrIV:568687-569207 7.7e-11 25_[+2]_54 chrVII:738930-739368 1.9e-10 65_[+2]_14 chrXVI:880102-880561 1.9e-10 24_[-2]_55 chrIX:210446-210919 1.9e-10 75_[+2]_4 chrV:551146-551538 1.9e-10 2_[-2]_77 chrV:487188-487586 7.9e-10 3_[-2]_76 chrVII:328371-328922 7.9e-10 27_[+2]_52 chrV:176898-177396 7.9e-10 42_[+2]_37 chrXIII:290606-291019 7.9e-10 79_[+2] chrVII:541591-542162 7.9e-10 64_[+2]_15 chrXI:140825-141285 7.9e-10 22_[-2]_57 chrX:197154-197254 8.9e-10 6_[-2]_73 chrXI:219691-220125 8.9e-10 78_[+2]_1 chrVII:774156-774667 8.9e-10 29_[+2]_50 chrXII:656764-657197 8.9e-10 13_[-2]_66 chrVIII:475468-475965 1e-09 49_[-2]_30 chrXV:110792-111233 2.4e-09 9_[-2]_70 chrXV:353854-354315 3e-09 16_[-2]_63 chrIII:295283-295775 3e-09 46_[+2]_33 chrXIV:560507-560969 3e-09 14_[-2]_65 chrIX:174837-175308 3e-09 50_[+2]_29 chrXIV:104607-105111 3e-09 37_[+2]_42 chrIV:434015-434551 3e-09 40_[-2]_39 chrII:266185-266657 3e-09 48_[+2]_31 chrIV:488513-489084 3.3e-09 58_[-2]_21 chrX:538355-538455 4.1e-09 74_[+2]_5 chrV:467897-468129 8.7e-09 41_[-2]_38 chrXII:448497-448916 1.6e-08 3_[-2]_76 chrXV:228126-228567 2.2e-08 77_[+2]_2 chrXV:487240-487695 2.2e-08 64_[+2]_15 chrXIV:632406-632830 2.2e-08 73_[+2]_6 chrXII:975826-976233 2.2e-08 13_[-2]_66 chrIV:1175628-1176074 2.8e-08 69_[+2]_10 chrXIII:572704-573149 2.8e-08 16_[-2]_63 chrXV:976199-976677 2.8e-08 74_[+2]_5 chrVII:412126-412560 3.9e-08 10_[-2]_69 chrV:469257-469685 3.9e-08 78_[+2]_1 chrX:378158-378258 3.9e-08 79_[+2] chrVII:845431-845920 4.5e-08 63_[+2]_16 chrX:531613-531713 4.5e-08 25_[+2]_54 chrIV:1095146-1095654 7.9e-08 29_[-2]_50 chrIV:619783-620238 8.4e-08 18_[-2]_61 chrXV:340119-340561 8.4e-08 18_[-2]_61 chrXII:374154-374645 8.4e-08 47_[+2]_32 chrV:492192-492622 8.4e-08 4_[-2]_75 chrXII:426938-427393 9e-08 57_[+2]_22 chrIX:336178-336608 9e-08 15_[-2]_64 chrXV:571762-572178 9e-08 78_[+2]_1 chrVII:544341-544858 9e-08 37_[-2]_42 chrX:541294-541394 9e-08 77_[+2]_2 chrIV:946091-946600 9.6e-08 74_[+2]_5 chrX:517658-517758 3e-07 9_[-2]_70 chrXVI:338698-339111 3e-07 3_[-2]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTYMBGGGTTCGANYCCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAGRTYMBGGGTTCGANYCCC width=21 seqs=75 chrIII:123398-123829 ( 24) GAGGTCCCGGGTTCGAGTCCC 1 chrXIII:480435-480882 ( 23) AAGGTTAGGGGTTCGAGCCCC 1 chrVII:122088-122529 ( 53) AAGGTTAGGGGTTCGAGCCCC 1 chrVII:876195-876659 ( 59) AAGGTTAGGGGTTCGAGCCCC 1 chrXVI:581858-582311 ( 70) AAGGTTAGGGGTTCGAGCCCC 1 chrXI:202782-203258 ( 71) AAGGTTAGGGGTTCGAGCCCC 1 chrV:135204-135707 ( 30) AAGGTTAGGGGTTCGAGCCCC 1 chrVII:185541-185972 ( 18) AAGGTTAGGGGTTCGAGCCCC 1 chrVI:226531-226946 ( 10) AAGGTTAGGGGTTCGAGCCCC 1 chrX:414777-414877 ( 63) AAGGTTAGGGGTTCGAGCCCC 1 chrIV:1201543-1202024 ( 59) AAGGTTAGGGGTTCGAGCCCC 1 chrXII:875192-875630 ( 80) AATGTCAGGGGTTCGAGCCCC 1 chrVII:115295-115773 ( 69) AATGTCAGGGGTTCGAGCCCC 1 chrXV:438445-438918 ( 77) AATGTCAGGGGTTCGAGCCCC 1 chrXI:578769-579255 ( 68) AATGTCAGGGGTTCGAGCCCC 1 chrIV:359381-359845 ( 79) AATGTCAGGGGTTCGAGCCCC 1 chrVII:828476-829004 ( 43) AAGATTATGGGTTCGACCCCC 1 chrV:138475-139017 ( 11) AAGATTATGGGTTCGACCCCC 1 chrVII:405256-405748 ( 59) AAGATTATGGGTTCGACCCCC 1 chrX:374251-374351 ( 48) AAGATTATGGGTTCGACCCCC 1 chrVII:736116-736615 ( 66) AAGATTATGGGTTCGACCCCC 1 chrII:405678-406198 ( 31) AAGATTATGGGTTCGACCCCC 1 chrIV:568687-569207 ( 26) AAGATTATGGGTTCGACCCCC 1 chrVII:738930-739368 ( 66) GGGATCAGCGGTTCGATCCCG 1 chrXVI:880102-880561 ( 25) GGGATCAGCGGTTCGATCCCG 1 chrIX:210446-210919 ( 76) GGGATCAGCGGTTCGATCCCG 1 chrV:551146-551538 ( 3) GGGATCAGCGGTTCGATCCCG 1 chrV:487188-487586 ( 4) GGAGACCGGGGTTCGACTCCC 1 chrVII:328371-328922 ( 28) GGAGACCGGGGTTCGACTCCC 1 chrV:176898-177396 ( 43) GGAGACCGGGGTTCGACTCCC 1 chrXIII:290606-291019 ( 80) GGAGACCGGGGTTCGACTCCC 1 chrVII:541591-542162 ( 65) GGAGACCGGGGTTCGACTCCC 1 chrXI:140825-141285 ( 23) GGAGACCGGGGTTCGACTCCC 1 chrX:197154-197254 ( 7) GAGGTCTCCGGTTCGATTCCG 1 chrXI:219691-220125 ( 79) GAGGTCTCCGGTTCGATTCCG 1 chrVII:774156-774667 ( 30) GAGGTCTCCGGTTCGATTCCG 1 chrXII:656764-657197 ( 14) GAGGTCTCCGGTTCGATTCCG 1 chrVIII:475468-475965 ( 50) AAGGTCCCGAGTTCGATCCTC 1 chrXV:110792-111233 ( 10) GGGGACACGGGTTCGATTCTC 1 chrXV:353854-354315 ( 17) GAGATCATCGGTTCAAATCCG 1 chrIII:295283-295775 ( 47) GAGATCATCGGTTCAAATCCG 1 chrXIV:560507-560969 ( 15) GAGATCATCGGTTCAAATCCG 1 chrIX:174837-175308 ( 51) GAGATCATCGGTTCAAATCCG 1 chrXIV:104607-105111 ( 38) GAGATCATCGGTTCAAATCCG 1 chrIV:434015-434551 ( 41) GAGATCATCGGTTCAAATCCG 1 chrII:266185-266657 ( 49) GAGATCATCGGTTCAAATCCG 1 chrIV:488513-489084 ( 59) AAGATCCCGAGTTCGAACCTC 1 chrX:538355-538455 ( 75) AAGACTGCGGGTTCGAGTCCC 1 chrV:467897-468129 ( 42) CGGGATTCGGGTTCGAGCCCC 1 chrXII:448497-448916 ( 4) GACAACCCCGGTTCGAATCCG 1 chrXV:228126-228567 ( 78) AAGATCGTGAGTTCAACCCTC 1 chrXV:487240-487695 ( 65) AAGATCGTGAGTTCAACCCTC 1 chrXIV:632406-632830 ( 74) AAGATCGTGAGTTCAACCCTC 1 chrXII:975826-976233 ( 14) AAGATCGTGAGTTCAACCCTC 1 chrIV:1175628-1176074 ( 70) AAGGTCGAGAGTTCGAACCTC 1 chrXIII:572704-573149 ( 17) AAGGTCGAGAGTTCGAACCTC 1 chrXV:976199-976677 ( 75) AAGGTCGAGAGTTCGAACCTC 1 chrVII:412126-412560 ( 11) AACGTCCCCAGTTCGATCCTG 1 chrV:469257-469685 ( 79) AACGTCCCCAGTTCGATCCTG 1 chrX:378158-378258 ( 80) AACGTCCCCAGTTCGATCCTG 1 chrVII:845431-845920 ( 64) TGGGCCCCCGGTTCGATTCCG 1 chrX:531613-531713 ( 26) TGGGCCCCCGGTTCGATTCCG 1 chrIV:1095146-1095654 ( 30) GAGGTCCTGTGTTCGATCCAC 1 chrIV:619783-620238 ( 19) AAGATTCCAGGTTCAAGTCCT 1 chrXV:340119-340561 ( 19) AAGATTCCAGGTTCAAGTCCT 1 chrXII:374154-374645 ( 48) AAGATTCCAGGTTCAAGTCCT 1 chrV:492192-492622 ( 5) AAGATTCCAGGTTCAAGTCCT 1 chrXII:426938-427393 ( 58) CCAGATCGGGGTTCAATTCCC 1 chrIX:336178-336608 ( 16) CCAGATCGGGGTTCAATTCCC 1 chrXV:571762-572178 ( 79) CCAGATCGGGGTTCAATTCCC 1 chrVII:544341-544858 ( 38) CCAGATCGGGGTTCAATTCCC 1 chrX:541294-541394 ( 78) CCAGATCGGGGTTCAATTCCC 1 chrIV:946091-946600 ( 75) GAGATCGGGCGTTCGACTCGC 1 chrX:517658-517758 ( 10) GATGTCCTCGGATCGAAACCG 1 chrXVI:338698-339111 ( 4) GATGTCCTCGGATCGAAACCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTYMBGGGTTCGANYCCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 46480 bayes= 10.7064 E= 1.5e-264 75 -125 97 -354 127 -151 -3 -1287 -108 -183 189 -173 37 -1287 166 -1287 -73 -225 -1287 132 -1287 172 -1287 27 55 92 -66 -222 -295 49 112 -15 -254 69 175 -1287 -95 -383 210 -453 -1287 -1287 240 -1287 -354 -1287 -1287 165 -1287 -1287 -1287 169 -1287 240 -1287 -1287 -22 -1287 195 -1287 169 -1287 -1287 -1287 -73 34 63 -15 -354 149 -1287 51 -1287 240 -1287 -1287 -453 207 -383 -84 -1287 175 69 -254 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTYMBGGGTTCGANYCCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 75 E= 1.5e-264 0.520000 0.080000 0.373333 0.026667 0.746667 0.066667 0.186667 0.000000 0.146667 0.053333 0.706667 0.093333 0.400000 0.000000 0.600000 0.000000 0.186667 0.040000 0.000000 0.773333 0.000000 0.626667 0.000000 0.373333 0.453333 0.360000 0.120000 0.066667 0.040000 0.266667 0.413333 0.280000 0.053333 0.306667 0.640000 0.000000 0.160000 0.013333 0.813333 0.013333 0.000000 0.000000 1.000000 0.000000 0.026667 0.000000 0.000000 0.973333 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.266667 0.000000 0.733333 0.000000 1.000000 0.000000 0.000000 0.000000 0.186667 0.240000 0.293333 0.280000 0.026667 0.533333 0.000000 0.440000 0.000000 1.000000 0.000000 0.000000 0.013333 0.800000 0.013333 0.173333 0.000000 0.640000 0.306667 0.053333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGRTYMBGGGTTCGANYCCC MEME-2 regular expression -------------------------------------------------------------------------------- [AG]AG[GA]T[CT][AC][GTC][GC]GGTTC[GA]A[GTC][CT]CC[CG] -------------------------------------------------------------------------------- Time 627.05 secs. ******************************************************************************** ******************************************************************************** MOTIF SAMARCSKSMYGTGMTARCCRYTACACTAT MEME-3 width = 30 sites = 23 llr = 615 E-value = 8.9e-111 ******************************************************************************** -------------------------------------------------------------------------------- Motif SAMARCSKSMYGTGMTARCCRYTACACTAT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a5a6::22523:26:77::7::a3a::a2 pos.-specific C 3:4::74:333:::4:::aa:4::6:a::: probability G 7:::436442:7:6::33::3::::::::: matrix T :::::::42:5:a3:a:::::6a:2::a:8 bits 2.4 ** * 2.2 ** * 1.9 ** * 1.7 * * * ** ** **** Relative 1.4 ** * ** * * ** ** **** Entropy 1.2 ** * ** ** * ** ** **** (38.6 bits) 1.0 ** **** ** ********** ***** 0.7 ******* ******************* 0.5 ******** * ******************* 0.2 ****************************** 0.0 ------------------------------ Multilevel GAAAACGGGATGTGATAACCATTACACTAT consensus C C GGCTCCCA TC GG GC A A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAMARCSKSMYGTGMTARCCRYTACACTAT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrV:487188-487586 + 30 1.13e-15 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATTAA chrXVI:210046-210461 + 25 1.13e-15 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGACAAT chrII:644971-645384 - 46 1.13e-15 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATAAT chrV:176898-177396 - 8 1.13e-15 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGAT chrXIII:290606-291019 - 45 1.13e-15 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATTAT chrVII:541591-542162 - 30 1.13e-15 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATGGT chrVII:401394-401814 + 9 1.13e-15 TCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGAAACA chrXI:140825-141285 + 49 1.13e-15 TCTCCACGGT GAAAGCGTGATGTGATAGCCGTTACACTAT ATCGGATTAC chrIV:802580-803045 + 5 1.47e-13 GGAT CAAAACCGAAAGTGATAACCACTACACTAT AGGACCGACA chrIII:168155-168567 + 26 1.47e-13 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AGGACCAGGA chrXII:448497-448916 + 30 1.47e-13 TTGTCCGGAT CAAAACCGAAAGTGATAACCACTACACTAT AGGACCGGAA chrXIII:808091-808531 + 21 1.35e-12 TTGTTCGGAT CAGAACCGAAAGTGATAACCACTACACTAT AGGACCTTTT chrXII:426938-427393 - 23 2.48e-12 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTAT CACGGATAAG chrIX:336178-336608 + 42 2.48e-12 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTAT CACGGATTTG chrXV:571762-572178 - 44 2.48e-12 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTAT CACGGATTTT chrX:204530-204630 - 53 2.48e-12 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTAT CACGGATTTT chrVII:544341-544858 + 64 2.48e-12 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTAT CACGGAA chrX:541294-541394 - 43 2.48e-12 TCTGGCACGC GACAAGCGCCCATTCTGACCATTAAACTAT CACGGATTTT chrVIII:62556-62967 - 50 6.96e-12 TTTCATCGGC CACAACGATGTGTACTAACCACTATACTAA GATGGCATAT chrVII:319566-320082 - 13 6.96e-12 TTTCATCGGC CACAACGATGTGTACTAACCACTATACTAA GATGGCTAAT chrXI:313219-313664 + 46 6.96e-12 TTTCATCGGC CACAACGATGTGTACTAACCACTATACTAA GATGGCAAAC chrV:207158-207619 - 25 6.96e-12 TTTCATCGGC CACAACGATGTGTACTAACCACTATACTAA GATGGCGAAC chrXV:110792-111233 + 36 9.94e-12 TCCCCACCTT GGAAGGGTGGGATGATAACCACTACACTAA CCGCCCGGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAMARCSKSMYGTGMTARCCRYTACACTAT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:487188-487586 1.1e-15 29_[+3]_41 chrXVI:210046-210461 1.1e-15 24_[+3]_46 chrII:644971-645384 1.1e-15 45_[-3]_25 chrV:176898-177396 1.1e-15 7_[-3]_63 chrXIII:290606-291019 1.1e-15 44_[-3]_26 chrVII:541591-542162 1.1e-15 29_[-3]_41 chrVII:401394-401814 1.1e-15 8_[+3]_62 chrXI:140825-141285 1.1e-15 48_[+3]_22 chrIV:802580-803045 1.5e-13 4_[+3]_66 chrIII:168155-168567 1.5e-13 25_[+3]_45 chrXII:448497-448916 1.5e-13 29_[+3]_41 chrXIII:808091-808531 1.3e-12 20_[+3]_50 chrXII:426938-427393 2.5e-12 22_[-3]_48 chrIX:336178-336608 2.5e-12 41_[+3]_29 chrXV:571762-572178 2.5e-12 43_[-3]_27 chrX:204530-204630 2.5e-12 52_[-3]_18 chrVII:544341-544858 2.5e-12 63_[+3]_7 chrX:541294-541394 2.5e-12 42_[-3]_28 chrVIII:62556-62967 7e-12 49_[-3]_21 chrVII:319566-320082 7e-12 12_[-3]_58 chrXI:313219-313664 7e-12 45_[+3]_25 chrV:207158-207619 7e-12 24_[-3]_46 chrXV:110792-111233 9.9e-12 35_[+3]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAMARCSKSMYGTGMTARCCRYTACACTAT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SAMARCSKSMYGTGMTARCCRYTACACTAT width=30 seqs=23 chrV:487188-487586 ( 30) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrXVI:210046-210461 ( 25) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrII:644971-645384 ( 46) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrV:176898-177396 ( 8) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrXIII:290606-291019 ( 45) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrVII:541591-542162 ( 30) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrVII:401394-401814 ( 9) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrXI:140825-141285 ( 49) GAAAGCGTGATGTGATAGCCGTTACACTAT 1 chrIV:802580-803045 ( 5) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrIII:168155-168567 ( 26) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrXII:448497-448916 ( 30) CAAAACCGAAAGTGATAACCACTACACTAT 1 chrXIII:808091-808531 ( 21) CAGAACCGAAAGTGATAACCACTACACTAT 1 chrXII:426938-427393 ( 23) GACAAGCGCCCATTCTGACCATTAAACTAT 1 chrIX:336178-336608 ( 42) GACAAGCGCCCATTCTGACCATTAAACTAT 1 chrXV:571762-572178 ( 44) GACAAGCGCCCATTCTGACCATTAAACTAT 1 chrX:204530-204630 ( 53) GACAAGCGCCCATTCTGACCATTAAACTAT 1 chrVII:544341-544858 ( 64) GACAAGCGCCCATTCTGACCATTAAACTAT 1 chrX:541294-541394 ( 43) GACAAGCGCCCATTCTGACCATTAAACTAT 1 chrVIII:62556-62967 ( 50) CACAACGATGTGTACTAACCACTATACTAA 1 chrVII:319566-320082 ( 13) CACAACGATGTGTACTAACCACTATACTAA 1 chrXI:313219-313664 ( 46) CACAACGATGTGTACTAACCACTATACTAA 1 chrV:207158-207619 ( 25) CACAACGATGTGTACTAACCACTATACTAA 1 chrXV:110792-111233 ( 36) GGAAGGGTGGGATGATAACCACTACACTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAMARCSKSMYGTGMTARCCRYTACACTAT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 41251 bayes= 10.4146 E= 8.9e-111 -1117 87 178 -1117 163 -1117 -213 -1117 75 119 -213 -1117 169 -1117 -1117 -1117 97 -1117 104 -1117 -1117 187 68 -1117 -1117 119 157 -1117 -83 -1117 119 34 -83 46 104 -83 75 46 19 -1117 -83 46 -213 75 -3 -1117 187 -1117 -1117 -1117 -1117 169 -83 -1117 157 -25 87 119 -1117 -1117 -1117 -1117 -1117 169 125 -1117 46 -1117 107 -1117 87 -1117 -1117 240 -1117 -1117 -1117 240 -1117 -1117 107 -1117 87 -1117 -1117 104 -1117 97 -1117 -1117 -1117 169 169 -1117 -1117 -1117 -25 157 -1117 -83 169 -1117 -1117 -1117 -1117 240 -1117 -1117 -1117 -1117 -1117 169 169 -1117 -1117 -1117 -51 -1117 -1117 134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAMARCSKSMYGTGMTARCCRYTACACTAT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 23 E= 8.9e-111 0.000000 0.347826 0.652174 0.000000 0.956522 0.000000 0.043478 0.000000 0.521739 0.434783 0.043478 0.000000 1.000000 0.000000 0.000000 0.000000 0.608696 0.000000 0.391304 0.000000 0.000000 0.695652 0.304348 0.000000 0.000000 0.434783 0.565217 0.000000 0.173913 0.000000 0.434783 0.391304 0.173913 0.260870 0.391304 0.173913 0.521739 0.260870 0.217391 0.000000 0.173913 0.260870 0.043478 0.521739 0.304348 0.000000 0.695652 0.000000 0.000000 0.000000 0.000000 1.000000 0.173913 0.000000 0.565217 0.260870 0.565217 0.434783 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.739130 0.000000 0.260870 0.000000 0.652174 0.000000 0.347826 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.652174 0.000000 0.347826 0.000000 0.000000 0.391304 0.000000 0.608696 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.260870 0.565217 0.000000 0.173913 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.217391 0.000000 0.000000 0.782609 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SAMARCSKSMYGTGMTARCCRYTACACTAT MEME-3 regular expression -------------------------------------------------------------------------------- [GC]A[AC]A[AG][CG][GC][GT][GC][ACG][TC][GA]T[GT][AC]T[AG][AG]CC[AG][TC]TA[CA]ACTA[TA] -------------------------------------------------------------------------------- Time 920.50 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:60800-61278 8.07e-01 100 chrXVI:338698-339111 2.81e-04 3_[-2(2.97e-07)]_76 chrXI:163410-163571 4.02e-01 100 chrV:61162-62150 1.11e-01 100 chrVII:882463-883418 6.97e-01 100 chrXII:5421-5950 3.41e-01 100 chrII:36206-36610 9.64e-05 44_[+1(2.30e-08)]_35 chrII:235360-235810 9.01e-01 100 chrXV:759332-759445 8.95e-01 100 chrV:288268-288720 2.69e-06 54_[-1(4.39e-10)]_25 chrXIV:725975-726419 8.18e-06 44_[-1(3.20e-09)]_35 chrV:354725-355383 7.10e-01 100 chrVII:287183-287646 2.23e-01 100 chrVII:277021-277410 6.63e-01 100 chrXVI:694775-695225 2.98e-01 100 chrXIII:808091-808531 4.92e-11 20_[+3(1.35e-12)]_50 chrXII:790084-790365 2.57e-01 100 chrXV:274469-274925 2.01e-05 30_[+1(1.18e-09)]_49 chrXIII:751210-751660 1.38e-01 100 chrXII:282485-283003 7.51e-01 100 chrVII:785819-786026 5.16e-01 100 chrXII:167801-168222 2.10e-07 38_[-1(2.34e-11)]_41 chrVII:788285-788748 7.57e-01 100 chrV:491097-491469 1.66e-01 100 chrXII:202346-202796 6.28e-01 100 chrXIV:631705-632114 1.77e-01 100 chrIV:45151-45601 1.20e-04 51_[+2(2.73e-06)]_28 chrXII:645830-646099 3.31e-01 100 chrX:227823-227923 3.86e-01 100 chrXV:619820-623865 3.13e-01 100 chrXII:201886-202139 2.08e-01 100 chrXV:594217-594637 7.83e-06 12_[+3(3.60e-07)]_58 chrVI:4426-5019 5.55e-01 100 chrXIII:362758-363303 2.25e-01 100 chrXVI:109839-110289 9.45e-01 100 chrV:207158-207619 7.05e-11 24_[-3(6.96e-12)]_46 chrVII:479209-480022 3.28e-01 100 chrVIII:455476-455950 4.35e-02 79_[-1(5.66e-05)] chrIV:1161628-1161830 2.91e-01 100 chrVII:557361-557910 8.48e-01 100 chrVIII:206054-206376 7.39e-01 100 chrIV:1201543-1202024 4.23e-15 21_[+1(5.90e-10)]_16_[+2(2.21e-12)]_\ 21 chrXII:975826-976233 3.38e-10 13_[-2(2.24e-08)]_17_[-1(1.74e-09)]_\ 28 chrV:467897-468129 6.97e-06 41_[-2(8.75e-09)]_38 chrII:235097-235375 4.25e-01 100 chrXV:87579-88029 9.69e-01 100 chrX:608721-608821 8.84e-01 100 chrX:378158-378258 5.39e-09 41_[+1(1.31e-07)]_17_[+2(3.87e-08)] chrXIV:575486-575936 1.12e-01 100 chrXIV:628751-628981 8.77e-01 100 chrI:180951-181439 2.33e-05 [+1(4.67e-08)]_79 chrXIII:167851-168301 6.89e-01 100 chrIV:1237973-1238269 9.72e-01 100 chrXII:656764-657197 9.47e-13 13_[-2(8.88e-10)]_16_[-1(9.01e-10)]_\ 29 chrXII:36678-36961 1.99e-01 100 chrIV:509577-509948 1.83e-01 100 chrVII:774156-774667 5.78e-06 29_[+2(8.88e-10)]_50 chrII:373797-374247 8.21e-01 100 chrVII:930813-931225 4.71e-02 28_[-1(6.68e-05)]_51 chrXIII:552888-553185 4.80e-01 100 chrVII:94801-95023 2.58e-02 100 chrXV:508-1035 7.23e-01 100 chrXIII:253342-253620 7.73e-01 100 chrXIV:632406-632830 3.38e-10 35_[+1(1.74e-09)]_17_[+2(2.24e-08)]_\ 6 chrX:90043-90143 9.23e-01 100 chrXV:1053966-1054436 4.86e-01 100 chrXVI:280731-281346 4.97e-02 13_[-2(7.11e-05)]_66 chrXVI:517070-517283 9.53e-01 100 chrVIII:470772-471012 4.97e-01 100 chrXVI:821914-822026 5.66e-01 100 chrXVI:794473-794833 9.01e-01 100 chrVIII:461939-462278 4.95e-01 100 chrXVI:404530-404890 8.87e-01 100 chrXV:415445-415657 1.11e-01 100 chrXVI:76311-76751 7.53e-01 100 chrX:414777-414877 4.23e-15 25_[+1(5.90e-10)]_16_[+2(2.21e-12)]_\ 17 chrX:349072-349172 1.49e-01 100 chrXI:313219-313664 7.05e-11 45_[+3(6.96e-12)]_25 chrXV:1028567-1029122 4.51e-01 100 chrII:266185-266657 6.47e-12 11_[+1(3.77e-10)]_16_[+2(3.01e-09)]_\ 31 chrXII:638194-638440 7.54e-02 37_[+2(6.15e-05)]_42 chrIV:980816-981260 5.69e-07 41_[-1(2.34e-11)]_38 chrVIII:386350-386800 7.23e-01 100 chrI:29-317 1.10e-01 25_[-1(9.87e-05)]_54 chrXIII:652079-652853 7.75e-01 100 chrV:157546-157996 5.75e-01 100 chrIV:579653-580348 2.08e-01 100 chrXV:882737-883187 5.46e-01 100 chrXI:219691-220125 9.47e-13 41_[+1(9.01e-10)]_16_[+2(8.88e-10)]_\ 1 chrXV:281964-282375 4.71e-02 49_[+1(6.68e-05)]_30 chrVII:26-249 8.18e-01 100 chrXII:637321-637905 4.66e-01 100 chrIV:579044-579437 8.72e-01 100 chrXII:856772-857015 6.84e-01 100 chrXIII:747748-748167 2.01e-02 30_[-1(2.56e-05)]_49 chrVII:365317-365767 1.41e-01 100 chrXII:728304-728532 4.08e-01 100 chrIV:568687-569207 1.24e-08 25_[+2(7.68e-11)]_25_[+1(2.65e-05)]_\ 8 chrXI:84007-84425 1.10e-05 46_[+1(3.20e-09)]_33 chrII:405678-406198 1.08e-08 30_[+2(7.68e-11)]_25_[+1(2.65e-05)]_\ 3 chrIII:163442-163900 3.41e-01 100 chrXII:793714-795324 8.73e-02 100 chrXI:385496-385669 1.86e-01 100 chrVII:990036-990283 7.96e-01 100 chrXV:866549-866991 7.31e-01 100 chrVIII:562217-562638 6.86e-01 100 chrXIII:762821-763271 4.79e-02 29_[+3(7.10e-05)]_41 chrXIV:576974-577224 2.89e-01 100 chrXIII:427095-427545 7.45e-01 100 chrV:424727-425177 8.82e-01 100 chrXII:628177-628667 3.20e-04 15_[+1(4.67e-08)]_64 chrII:167870-168245 4.47e-01 100 chrIV:1305436-1305876 2.49e-08 28_[+1(2.34e-11)]_51 chrVI:210476-210899 2.95e-04 44_[-1(2.16e-07)]_35 chrXVI:643042-643492 5.94e-01 100 chrIV:117137-117602 5.14e-01 100 chrX:58962-59062 4.63e-06 31_[-1(3.77e-10)]_48 chrXVI:249126-249576 9.50e-02 100 chrIV:519530-519935 2.23e-05 65_[+1(3.20e-09)]_14 chrXII:369246-370302 2.90e-01 100 chrII:9384-9823 1.70e-05 34_[+1(3.20e-09)]_45 chrXIII:754382-754801 8.49e-01 100 chrIII:127527-127910 1.03e-05 52_[+1(1.74e-09)]_27 chrXV:253761-254151 5.35e-01 100 chrVII:727040-727490 9.93e-01 100 chrXV:971047-971170 8.14e-01 100 chrVII:1000288-1000631 1.14e-01 100 chrVI:204793-205192 4.73e-07 28_[-1(9.01e-10)]_51 chrX:391808-391908 2.41e-01 100 chrIV:341229-341648 7.03e-01 100 chrXIII:759320-759567 7.80e-04 3_[-1(3.03e-07)]_76 chrXVI:378619-379059 1.93e-01 100 chrXIII:23715-25635 5.54e-02 30_[-3(8.83e-05)]_40 chrXI:334527-334650 4.00e-01 100 chrVII:856468-857097 6.26e-01 100 chrVI:226531-226946 4.23e-15 9_[-2(2.21e-12)]_16_[-1(5.90e-10)]_\ 33 chrXIV:585882-586432 3.79e-01 100 chrIV:465198-465485 8.14e-01 100 chrV:443087-443511 5.30e-07 [-1(8.16e-11)]_79 chrII:373109-373393 6.65e-01 100 chrVII:847747-848197 9.65e-01 100 chrXI:645398-645773 9.55e-01 100 chrXVI:377913-378363 6.02e-01 100 chrII:197295-197909 2.14e-01 100 chrIV:1300921-1301363 8.63e-01 100 chrV:212150-212533 6.26e-01 100 chrX:541294-541394 1.66e-14 42_[-3(2.48e-12)]_5_[+2(8.99e-08)]_\ 2 chrXIV:415798-416006 3.10e-01 100 chrV:551146-551538 1.13e-13 2_[-2(1.88e-10)]_17_[-1(8.16e-11)]_\ 39 chrVII:809458-809908 2.15e-01 100 chrVII:883375-883782 6.12e-01 100 chrV:441790-442631 1.75e-01 100 chrXV:978769-979167 6.43e-02 100 chrIV:434015-434551 6.47e-12 40_[-2(3.01e-09)]_16_[-1(3.77e-10)]_\ 2 chrVII:185541-185972 4.23e-15 17_[-2(2.21e-12)]_16_[-1(5.90e-10)]_\ 25 chrXII:952673-952826 8.03e-02 100 chrXV:892267-892513 7.16e-01 100 chrVII:110453-110895 7.05e-11 36_[+3(6.96e-12)]_34 chrV:124494-124944 9.55e-01 100 chrIII:178278-178714 9.74e-01 100 chrXIII:626366-626569 1.06e-01 100 chrIII:292617-293009 7.00e-01 100 chrXV:384778-384996 3.97e-01 100 chrII:89615-89973 8.22e-01 100 chrI:73758-74184 8.43e-01 100 chrIV:1239449-1239899 2.27e-01 100 chrIV:230433-230926 1.67e-02 56_[+1(5.29e-05)]_23 chrXVI:121349-121799 4.57e-01 100 chrXVI:785601-785898 4.45e-01 100 chrXVI:377244-377356 7.43e-01 100 chrXI:140825-141285 7.28e-19 22_[-2(7.87e-10)]_5_[+3(1.13e-15)]_\ 22 chrXII:837626-839262 1.61e-01 100 chrX:606314-606414 6.80e-01 100 chrXII:39544-39729 7.23e-01 100 chrXII:262762-263158 5.59e-01 100 chrXII:448497-448916 9.80e-17 3_[-2(1.61e-08)]_5_[+3(1.47e-13)]_\ 41 chrXI:216866-217057 8.07e-01 100 chrXI:217040-217490 4.73e-01 100 chrX:538355-538455 6.94e-08 38_[+1(9.34e-06)]_15_[+2(4.08e-09)]_\ 5 chrVII:544341-544858 1.66e-14 37_[-2(8.99e-08)]_5_[+3(2.48e-12)]_\ 7 chrXII:930925-931375 5.10e-01 100 chrV:406601-407051 4.40e-01 100 chrXVI:641186-641561 5.00e-01 100 chrIII:64662-65112 8.59e-01 100 chrV:303687-304176 9.52e-01 100 chrII:254322-254541 6.36e-01 100 chrIII:14341-14808 3.95e-01 100 chrI:138966-139396 6.42e-02 100 chrXII:232210-233981 2.17e-01 100 chrV:423073-423502 2.69e-01 100 chrIX:136343-136793 7.33e-01 100 chrIII:30-691 3.79e-02 100 chrV:79382-79551 7.59e-01 100 chrM:59524-59886 6.87e-01 100 chrIV:437577-437988 6.26e-07 44_[+1(2.34e-11)]_35 chrXI:99657-100010 6.69e-01 100 chrXII:166898-167348 5.54e-01 100 chrXIII:550101-550287 9.60e-01 100 chrIV:915922-916155 7.98e-01 100 chrXII:1064326-1064563 9.17e-01 100 chrX:197154-197254 9.47e-13 6_[-2(8.88e-10)]_16_[-1(9.01e-10)]_\ 36 chrXII:35159-35495 8.54e-01 100 chrI:182378-182822 6.87e-07 27_[-1(2.34e-11)]_52 chrIV:1062733-1063127 8.48e-01 100 chrVIII:103866-104285 9.92e-01 100 chrXV:908617-909067 6.35e-01 100 chrXII:650293-650743 1.72e-01 100 chrXVI:781889-782092 4.32e-01 100 chrV:135204-135707 4.23e-15 29_[-2(2.21e-12)]_16_[-1(5.90e-10)]_\ 13 chrIII:131852-132136 8.72e-02 100 chrXI:28-345 6.37e-03 12_[-1(5.47e-05)]_67 chrIV:1524644-1524938 8.76e-01 100 chrIV:156123-156348 3.68e-01 100 chrX:390875-390975 9.51e-04 18_[-1(3.92e-07)]_61 chrII:87964-88559 5.94e-01 100 chrV:397401-397851 2.85e-01 100 chrXVI:588637-588754 8.80e-01 100 chrIV:538941-539267 1.50e-01 100 chrIV:1359373-1359835 7.96e-01 100 chrX:464581-464681 9.69e-02 100 chrXII:1051944-1052337 3.24e-07 28_[-1(8.16e-11)]_51 chrII:615063-615195 2.14e-01 100 chrV:492192-492622 1.82e-09 4_[-2(8.42e-08)]_16_[-1(7.01e-09)]_\ 38 chrIX:129932-130148 2.15e-01 100 chrIII:123398-123829 2.08e-09 23_[-2(1.06e-12)]_56 chrXVI:575191-575393 9.80e-01 100 chrIV:359381-359845 5.06e-15 18_[+1(1.18e-09)]_39_[+2(4.01e-11)]_\ 1 chrV:430989-431573 7.01e-02 100 chrII:88880-89330 6.09e-01 100 chrVI:181905-182254 4.75e-01 100 chrXI:578769-579255 5.06e-15 7_[+1(1.18e-09)]_39_[+2(4.01e-11)]_\ 12 chrX:617718-617818 1.51e-06 29_[+1(1.53e-09)]_50 chrVII:736116-736615 5.73e-09 29_[+1(2.56e-05)]_15_[+2(7.68e-11)]_\ 14 chrX:121652-121752 2.76e-01 100 chrXI:361777-361956 9.52e-01 100 chrIV:1278668-1278978 6.58e-01 100 chrXII:234559-234873 4.34e-01 100 chrX:204530-204630 5.40e-10 52_[-3(2.48e-12)]_18 chrXIII:837711-838126 3.67e-05 64_[+1(2.16e-07)]_15 chrVI:223050-223500 5.65e-02 56_[+1(1.85e-05)]_23 chrXI:308005-308417 4.78e-04 30_[-1(1.31e-07)]_49 chrXIII:800233-800683 9.91e-01 100 chrIV:217152-217562 6.86e-02 58_[-2(7.96e-05)]_21 chrX:445241-445341 5.39e-01 100 chrXV:487240-487695 3.38e-10 26_[+1(1.74e-09)]_17_[+2(2.24e-08)]_\ 15 chrXIII:861150-861437 5.50e-01 100 chrXII:1018949-1019384 6.23e-02 19_[-3(9.56e-05)]_51 chrXI:202782-203258 4.23e-15 33_[+1(5.90e-10)]_16_[+2(2.21e-12)]_\ 9 chrVII:10232-10397 6.12e-01 100 chrXII:805491-805743 5.34e-01 100 chrXIV:569743-570118 1.18e-06 34_[-1(8.16e-11)]_45 chrXI:383499-383949 3.22e-01 100 chrXVI:701139-701589 2.17e-02 38_[+1(3.27e-05)]_41 chrXI:618781-619236 9.57e-03 15_[+3(9.13e-05)]_55 chrXIV:104607-105111 6.47e-12 [+1(3.77e-10)]_16_[+2(3.01e-09)]_42 chrVII:475961-476411 6.85e-01 100 chrXI:514006-514516 8.20e-01 100 chrX:213685-213785 8.26e-01 100 chrXI:436792-437242 8.35e-01 100 chrIV:525100-525332 8.16e-01 100 chrIX:174837-175308 6.47e-12 13_[+1(3.77e-10)]_16_[+2(3.01e-09)]_\ 29 chrV:397604-398054 7.36e-01 100 chrIV:591755-591870 1.76e-01 100 chrVII:311127-311594 1.46e-01 100 chrVII:438550-438924 3.95e-01 100 chrIII:168155-168567 1.19e-12 25_[+3(1.47e-13)]_45 chrII:604096-604543 8.64e-01 100 chrVIII:475468-475965 1.29e-05 49_[-2(9.99e-10)]_30 chrVII:851224-851674 8.15e-01 100 chrV:469257-469685 5.39e-09 40_[+1(1.31e-07)]_17_[+2(3.87e-08)]_\ 1 chrV:69035-69785 5.87e-01 100 chrVII:401394-401814 1.84e-12 8_[+3(1.13e-15)]_62 chrII:796670-796894 6.38e-01 100 chrXIII:296766-298870 9.18e-01 100 chrXIII:500885-501073 8.15e-01 100 chrVIII:147742-148192 6.44e-02 100 chrV:56206-56480 6.05e-01 100 chrXV:438445-438918 5.06e-15 16_[+1(1.18e-09)]_39_[+2(4.01e-11)]_\ 3 chrXVI:701829-702168 9.83e-01 100 chrIX:210446-210919 2.22e-13 37_[+1(8.16e-11)]_17_[+2(1.88e-10)]_\ 4 chrXV:571762-572178 1.66e-14 43_[-3(2.48e-12)]_5_[+2(8.99e-08)]_\ 1 chrXIII:616070-616417 4.05e-01 100 chrVII:115295-115773 5.06e-15 8_[+1(1.18e-09)]_39_[+2(4.01e-11)]_\ 11 chrXV:832435-832725 6.48e-01 100 chrXII:1064809-1065381 6.72e-01 100 chrXVI:719009-719231 3.56e-01 100 chrVII:766159-766571 6.52e-02 100 chrVII:611877-612327 1.72e-01 100 chrXII:214749-215150 4.21e-08 30_[-1(6.74e-11)]_49 chrX:139143-139243 3.85e-01 100 chrXIII:37607-38037 5.64e-01 100 chrXIII:123080-123530 8.91e-01 100 chrVII:319566-320082 7.05e-11 12_[-3(6.96e-12)]_58 chrXIII:267637-268285 9.70e-01 100 chrV:143880-144108 7.84e-01 100 chrV:435621-436039 1.36e-06 18_[-1(5.90e-10)]_61 chrXV:623797-624631 4.61e-01 100 chrVIII:132883-133330 1.60e-07 25_[-1(2.34e-11)]_54 chrXII:922091-922576 1.89e-01 100 chrX:517658-517758 2.81e-04 9_[-2(2.97e-07)]_70 chrX:374251-374351 1.08e-08 1_[-1(2.65e-05)]_25_[-2(7.68e-11)]_\ 32 chrXVI:810447-810879 2.39e-06 67_[+1(1.74e-09)]_12 chrXV:40460-40661 2.97e-01 100 chrXII:11014-11621 5.54e-01 100 chrVII:907492-907942 3.30e-01 100 chrIV:802580-803045 4.75e-13 4_[+3(1.47e-13)]_66 chrXV:94458-94859 8.10e-01 100 chrXIV:63081-63565 8.61e-01 100 chrXII:366051-366485 7.32e-02 63_[-2(8.41e-05)]_16 chrIX:336178-336608 1.66e-14 15_[-2(8.99e-08)]_5_[+3(2.48e-12)]_\ 29 chrXV:976199-976677 5.78e-08 37_[+1(3.92e-07)]_16_[+2(2.85e-08)]_\ 5 chrXIII:756229-756679 7.85e-01 100 chrV:363796-363984 5.53e-01 100 chrXII:1012109-1012389 5.44e-02 100 chrXVI:591020-591372 2.85e-01 100 chrVII:879770-879922 1.88e-01 100 chrVII:556006-556456 8.65e-01 100 chrXVI:406174-406584 2.38e-01 100 chrVII:857227-857673 3.78e-04 65_[-1(4.67e-08)]_14 chrVII:310487-311021 4.51e-01 100 chrX:608507-608607 2.46e-01 100 chrXIII:572704-573149 4.28e-08 16_[-2(2.85e-08)]_16_[-1(3.92e-07)]_\ 26 chrIII:138747-138918 2.16e-02 50_[-3(6.78e-05)]_20 chrVII:780462-780835 3.69e-03 37_[-1(5.26e-06)]_42 chrXI:517784-518163 4.11e-07 69_[+1(9.01e-10)]_10 chrXVI:880102-880561 9.39e-14 24_[-2(1.88e-10)]_17_[-1(8.16e-11)]_\ 17 chrXV:382928-383560 3.20e-01 100 chrVII:541591-542162 7.28e-19 29_[-3(1.13e-15)]_5_[+2(7.87e-10)]_\ 15 chrVIII:382873-383351 3.53e-01 100 chrIV:449598-449912 9.99e-01 100 chrXV:226479-226879 3.21e-02 26_[-1(6.68e-05)]_53 chrVIII:505793-506226 6.50e-01 100 chrIX:438876-439386 8.60e-01 100 chrXII:820125-820307 4.64e-01 100 chrX:18736-18836 9.43e-01 100 chrXIII:504689-505220 2.59e-01 100 chrIII:137741-138191 5.66e-01 100 chrXIII:753341-753791 3.69e-01 100 chrVI:224989-225418 1.82e-01 100 chrV:228237-228565 9.99e-01 100 chrXIII:195907-196381 6.42e-02 100 chrVI:101180-101621 7.92e-02 100 chrX:607815-607915 5.07e-01 100 chrXV:901380-901699 3.67e-01 100 chrV:241941-242392 4.04e-01 100 chrVII:878566-879019 2.11e-01 100 chrXV:678669-679218 4.63e-01 100 chrX:74622-74722 9.38e-01 100 chrVII:700460-701244 9.90e-01 100 chrXV:30312-30762 6.02e-01 100 chrIV:1345161-1345661 7.75e-01 100 chrXIV:241374-241763 3.08e-01 100 chrXII:150974-151424 9.15e-01 100 chrXVI:282340-282790 1.25e-01 100 chrVIII:492286-492736 8.85e-01 100 chrIII:11006-11492 2.04e-01 100 chrVIII:556588-557248 5.09e-01 100 chrVI:5234-5489 8.21e-01 100 chrVI:64943-65359 8.99e-01 100 chrIV:488513-489084 3.04e-05 58_[-2(3.33e-09)]_21 chrII:44980-45385 6.44e-01 100 chrVII:148368-148818 4.26e-01 100 chrXIII:290606-291019 7.28e-19 44_[-3(1.13e-15)]_5_[+2(7.87e-10)] chrXIV:330800-331146 3.34e-01 100 chrXIV:783780-784194 1.77e-01 100 chrVII:1058861-1059126 9.44e-01 100 chrXIII:352072-352505 5.94e-05 46_[+1(2.30e-08)]_33 chrXII:48688-49121 9.35e-01 100 chrIV:1301844-1302294 9.23e-01 100 chrXV:110792-111233 1.16e-15 9_[-2(2.44e-09)]_5_[+3(9.94e-12)]_\ 35 chrXIII:9831-10240 5.32e-01 100 chrIV:130544-130996 4.98e-01 100 chrXV:979144-979678 6.55e-01 100 chrII:798691-799129 9.95e-01 100 chrII:377811-378261 1.78e-01 100 chrXVI:581858-582311 4.23e-15 32_[+1(5.90e-10)]_16_[+2(2.21e-12)]_\ 10 chrVII:1057186-1057636 8.51e-01 100 chrIV:946091-946600 5.24e-08 21_[+1(2.16e-07)]_32_[+2(9.61e-08)]_\ 5 chrM:60662-60829 8.96e-01 100 chrVIII:466772-467182 2.96e-02 100 chrXII:522135-522478 5.05e-01 100 chrXII:592373-592821 6.33e-07 46_[-1(1.53e-09)]_33 chrVII:986764-987198 4.07e-01 100 chrVII:405256-405748 5.73e-09 22_[+1(2.56e-05)]_15_[+2(7.68e-11)]_\ 21 chrX:531613-531713 7.03e-05 25_[+2(4.48e-08)]_54 chrXII:26-304 8.23e-01 100 chrXIII:550641-551091 2.39e-01 100 chrX:523862-523962 7.18e-07 34_[-1(2.34e-11)]_45 chrVII:23436-23699 8.95e-01 100 chrV:152776-152965 9.49e-01 100 chrXVI:407177-407627 5.19e-01 100 chrVII:799664-800114 2.38e-01 100 chrIII:124223-124673 8.67e-01 100 chrXII:283422-283803 2.57e-01 100 chrV:438504-438901 1.68e-04 52_[+1(1.31e-07)]_27 chrV:67875-68325 2.12e-01 100 chrXIII:379170-379603 1.20e-01 100 chrXV:80492-80942 5.73e-01 100 chrXII:673749-674283 2.42e-02 100 chrXIII:224030-224394 8.92e-01 100 chrVII:919933-920255 8.02e-01 100 chrXV:911905-912335 5.47e-01 100 chrXIV:102519-102919 9.99e-06 51_[+1(1.74e-09)]_28 chrX:669213-669313 7.15e-01 100 chrXVI:239103-239461 5.77e-01 100 chrV:176898-177396 7.28e-19 7_[-3(1.13e-15)]_5_[+2(7.87e-10)]_\ 37 chrIX:300093-300503 1.48e-06 26_[-1(5.90e-10)]_53 chrVII:364084-364534 6.40e-01 100 chrX:440629-440729 7.77e-01 100 chrIV:1175628-1176074 5.75e-08 32_[+1(3.92e-07)]_16_[+2(2.85e-08)]_\ 10 chrXV:1027969-1028302 9.49e-01 100 chrVII:480658-482783 2.97e-01 100 chrXIV:374681-375091 5.37e-05 37_[+1(1.18e-08)]_42 chrIII:227748-228199 4.07e-06 23_[+1(4.39e-10)]_56 chrXI:458354-458858 3.78e-04 5_[+1(4.67e-08)]_74 chrIV:221928-222348 4.57e-01 100 chrXI:393439-393676 7.73e-01 100 chrXV:779675-780905 9.69e-01 100 chrXIV:560507-560969 5.70e-12 14_[-2(3.01e-09)]_16_[-1(3.77e-10)]_\ 28 chrV:154996-155446 8.56e-01 100 chrII:226868-227360 2.58e-08 15_[+1(2.34e-11)]_64 chrIII:295283-295775 6.47e-12 9_[+1(3.77e-10)]_16_[+2(3.01e-09)]_\ 33 chrVII:706942-707392 1.54e-02 [-2(9.14e-05)]_79 chrV:53500-53954 5.86e-01 100 chrII:592861-593302 6.05e-01 100 chrXVI:587308-587576 4.59e-01 100 chrVII:311531-312170 1.56e-02 100 chrXV:83069-83519 1.36e-01 40_[+1(8.97e-05)]_39 chrV:362171-362522 9.69e-01 100 chrXI:519837-520287 2.82e-01 100 chrV:138475-139017 1.65e-06 10_[+2(7.68e-11)]_69 chrXIII:760598-761048 1.76e-01 100 chrXV:778840-779290 5.86e-01 100 chrVII:1050291-1050466 3.13e-01 100 chrVII:546355-546805 3.26e-01 100 chrXII:374154-374645 1.82e-09 10_[+1(7.01e-09)]_16_[+2(8.42e-08)]_\ 32 chrIII:77851-78071 9.03e-01 100 chrII:0-418 3.19e-01 100 chrXII:903383-903682 4.46e-01 100 chrXVI:645327-645719 8.96e-01 100 chrVII:876195-876659 4.23e-15 21_[+1(5.90e-10)]_16_[+2(2.21e-12)]_\ 21 chrXI:666396-666732 8.68e-01 100 chrXVI:192292-192742 3.10e-01 100 chrII:220970-221175 7.58e-01 100 chrVII:328371-328922 4.84e-06 27_[+2(7.87e-10)]_52 chrXVI:556438-556888 6.79e-01 100 chrIV:411235-411669 3.82e-01 100 chrIX:257319-257733 2.42e-01 100 chrVII:122088-122529 4.23e-15 15_[+1(5.90e-10)]_16_[+2(2.21e-12)]_\ 27 chrIV:1256898-1257276 5.80e-06 6_[+3(4.01e-07)]_64 chrVII:366055-366568 2.96e-01 100 chrXIII:923401-923866 7.26e-01 100 chrXIII:30183-30525 2.61e-01 100 chrXII:370527-370971 6.16e-01 100 chrXII:822605-822920 9.02e-01 100 chrI:71074-71300 8.20e-01 100 chrXIII:762573-763023 9.57e-01 100 chrXV:228126-228567 4.00e-10 39_[+1(1.74e-09)]_17_[+2(2.24e-08)]_\ 2 chrIX:131831-132105 7.76e-01 100 chrXIII:259008-259444 3.29e-07 37_[-1(2.34e-11)]_42 chrVIII:161584-162034 8.60e-01 100 chrIV:1095146-1095654 1.15e-05 29_[-2(7.87e-08)]_50 chrII:644971-645384 1.73e-12 45_[-3(1.13e-15)]_25 chrXVI:210046-210461 5.65e-13 24_[+3(1.13e-15)]_46 chrXII:199137-199626 5.07e-01 100 chrX:157419-157519 4.66e-01 100 chrVIII:237686-238153 4.37e-05 44_[-1(2.30e-08)]_35 chrXV:671084-671424 2.34e-01 100 chrXII:924558-924929 8.55e-01 100 chrVII:533780-534230 6.06e-01 100 chrXV:340119-340561 1.82e-09 18_[-2(8.42e-08)]_16_[-1(7.01e-09)]_\ 24 chrX:459311-459411 6.26e-01 100 chrII:292316-292620 6.63e-01 100 chrXII:806536-806713 6.48e-01 100 chrVII:555132-555719 8.83e-01 100 chrXV:216214-216708 6.09e-01 100 chrVII:412126-412560 5.39e-09 10_[-2(3.87e-08)]_17_[-1(1.31e-07)]_\ 31 chrIV:386276-386983 9.79e-01 100 chrXII:649901-650351 9.44e-01 100 chrVI:167251-167667 1.74e-04 32_[+1(2.16e-07)]_47 chrXII:932047-932520 8.88e-01 100 chrXV:326553-326716 7.55e-01 100 chrXIII:732002-732425 9.16e-01 100 chrVII:921470-921920 1.79e-01 100 chrVIII:62556-62967 8.89e-10 49_[-3(6.96e-12)]_21 chrIV:118054-118176 9.99e-01 100 chrXV:977933-978383 4.17e-01 100 chrXV:353854-354315 6.47e-12 16_[-2(3.01e-09)]_16_[-1(3.77e-10)]_\ 26 chrIV:976541-976787 3.98e-01 100 chrX:651219-651319 4.08e-01 100 chrVII:726409-726811 9.83e-01 100 chrVII:148043-148493 1.91e-01 100 chrIV:1239650-1240100 7.40e-01 100 chrXI:106434-106884 7.60e-01 100 chrXIII:480435-480882 4.23e-15 22_[-2(2.21e-12)]_16_[-1(5.90e-10)]_\ 20 chrXII:818761-819208 5.37e-01 100 chrXV:347633-347843 8.42e-01 100 chrXIII:123616-124066 6.12e-02 41_[-2(4.16e-05)]_38 chrII:301129-301579 1.61e-01 100 chrXV:968096-968433 2.87e-01 100 chrVIII:381661-382063 3.40e-01 100 chrXIV:626219-626669 6.38e-01 100 chrIX:27-313 9.20e-01 100 chrXV:608343-608614 2.36e-01 100 chrIV:619783-620238 1.82e-09 18_[-2(8.42e-08)]_16_[-1(7.01e-09)]_\ 24 chrIII:78373-78696 4.22e-01 100 chrXIII:29136-29586 2.69e-03 39_[+1(1.32e-05)]_40 chrVIII:375473-375658 5.65e-01 100 chrII:350624-351027 1.19e-12 57_[-3(1.47e-13)]_13 chrVII:483311-483809 5.63e-01 100 chrXII:897681-898072 8.53e-01 100 chrV:68303-68494 1.83e-01 100 chrIV:1165566-1165856 2.94e-01 100 chrXI:614205-614400 1.90e-01 100 chrVIII:543403-543853 4.27e-01 100 chrXV:796971-797346 8.27e-01 100 chrXIV:444428-444805 8.39e-01 100 chrVII:738930-739368 2.22e-13 27_[+1(8.16e-11)]_17_[+2(1.88e-10)]_\ 14 chrXI:326150-326806 6.63e-01 100 chrVII:682134-682548 7.40e-01 100 chrVIII:411162-411581 7.71e-01 100 chrI:72085-72604 1.29e-01 100 chrXII:426938-427393 1.66e-14 22_[-3(2.48e-12)]_5_[+2(8.99e-08)]_\ 22 chrX:75327-75427 3.74e-01 100 chrXV:109524-110136 2.95e-01 100 chrXII:875192-875630 5.06e-15 19_[+1(1.18e-09)]_39_[+2(4.01e-11)] chrX:233731-233831 3.68e-05 47_[+1(7.01e-09)]_32 chrVII:479940-480768 7.34e-01 100 chrXIV:442809-443361 1.97e-01 100 chrVIII:80196-80646 8.23e-01 100 chrV:122929-123220 4.37e-01 100 chrIII:142573-143023 2.71e-01 100 chrXII:390514-390959 4.15e-01 100 chrIV:599759-600089 2.90e-01 100 chrVII:794223-794632 3.11e-08 44_[+1(6.74e-11)]_35 chrXVI:281470-281949 5.13e-01 100 chrXI:440070-440220 9.19e-01 100 chrVIII:452554-452933 7.60e-01 100 chrVIII:148913-149322 4.65e-01 100 chrXII:498490-498998 7.89e-01 100 chrX:464927-465027 2.92e-01 100 chrXI:488-986 6.04e-01 100 chrVII:612078-612528 7.54e-01 100 chrIV:1468318-1468586 9.10e-01 100 chrII:256821-256992 8.74e-01 100 chrXI:361937-362387 4.27e-01 100 chrXII:737755-738063 8.28e-01 100 chrXI:518882-519173 3.74e-01 100 chrIX:68175-68562 5.73e-01 100 chrVII:371201-371521 4.51e-01 100 chrXVI:769029-769506 1.80e-07 59_[-1(1.18e-09)]_20 chrXI:490775-491169 3.31e-05 50_[+1(7.01e-09)]_29 chrV:487188-487586 7.28e-19 3_[-2(7.87e-10)]_5_[+3(1.13e-15)]_\ 41 chrXI:109657-109879 4.64e-01 100 chrXV:960232-960682 5.38e-01 100 chrXIV:240076-240242 2.39e-01 100 chrXV:161754-162014 7.61e-02 100 chrXIII:914865-915304 2.47e-01 100 chrI:143187-143528 9.05e-01 100 chrXVI:431729-432118 6.77e-01 100 chrXIV:499300-499645 4.75e-01 100 chrVII:648928-649395 9.89e-01 100 chrIV:520756-521190 1.19e-12 54_[-3(1.47e-13)]_16 chrIV:1461540-1462059 3.00e-04 54_[-1(4.67e-08)]_25 chrXIII:20615-20824 4.80e-01 100 chrVI:162022-162422 5.36e-02 60_[+1(6.68e-05)]_19 chrXI:431979-432429 8.89e-01 100 chrXI:379486-379895 3.20e-05 44_[+1(1.31e-07)]_35 chrV:225470-225651 6.16e-01 100 chrVII:845431-845920 3.40e-06 28_[+1(6.68e-05)]_14_[+2(4.48e-08)]_\ 16 chrXIV:234139-234589 4.66e-01 100 chrXIII:540407-540664 2.97e-01 100 chrXV:505094-505522 2.70e-01 100 chrV:58759-59209 4.10e-01 100 chrVII:828476-829004 9.21e-09 42_[-2(7.68e-11)]_15_[-1(2.56e-05)]_\ 1 chrXII:962841-963249 2.37e-05 34_[-1(3.20e-09)]_45 chrXV:117488-117938 7.31e-01 100 chrV:303148-303275 1.90e-01 100 chrXV:903938-904689 1.72e-01 100 chrVII:968745-969216 5.58e-01 100 chrXII:953163-953383 9.19e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************