Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.01264
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.054702
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.069241
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.011374
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background
Finished invoke:
  name: bg  status: 0  time: 0.009394
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/seqs-centered -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 866.958157
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 88.567365
Invoking:
  centrimo -seqlen 424 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.208259
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.47873
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary SSCYYWAMCCACTRVGCCAH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.842426
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary GRATCGAACCSVKGAYCTYMHGRTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.766554
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary RWRRTGTAYGGGTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.590454
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary TAAGGCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.393417
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary CAACTKGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.358626
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.315753
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary AARAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.582704
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.343471
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary ACSCAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.287637
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary TAKCTCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.297759
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary CASACGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.319752
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary CCAAVAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.350625
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary CTCTCSCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.272915
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary TCTCCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.297615
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary ATTAASAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.308372
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary CGCGTGSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo16  status: 0  time: 0.332748
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_17 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary CGTTAYAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo17  status: 0  time: 0.281222
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_18 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary AWGTGATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo18  status: 0  time: 0.304357
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_19 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary CCCGCGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo19  status: 0  time: 0.310566
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/spamo_out_20 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background -primary ATCKTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml
Finished invoke:
  name: spamo20  status: 0  time: 0.337059
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif SSCYYWAMCCACTRVGCCAH /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.23198
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif GRATCGAACCSVKGAYCTYMHGRTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.26152
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif RWRRTGTAYGGGTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.228096
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif TAAGGCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.111754
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif CAACTKGG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.112426
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.112939
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif AARAAAW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.097161
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.112411
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif ACSCAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.11109
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif TAKCTCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.110544
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif CASACGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.111038
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif CCAAVAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.113557
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif CTCTCSCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.111487
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif TCTCCACR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.111404
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif ATTAASAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.110659
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif CGCGTGSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo16  status: 0  time: 0.111796
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_17 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif CGTTAYAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo17  status: 0  time: 0.112349
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_18 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif AWGTGATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo18  status: 0  time: 0.11206
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_19 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif CCCGCGY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo19  status: 0  time: 0.11003
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/fimo_out_20 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/background --motif ATCKTGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/BY4742--CAD1.fa
Finished invoke:
  name: fimo20  status: 0  time: 0.111036
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--CAD1/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.172149
Done