Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.036464
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.11341
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.19115
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.020568
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.163056
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background
Finished invoke:
  name: bg  status: 0  time: 0.016223
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 962.982943
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 79.026946
Invoking:
  centrimo -seqlen 384 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.188303
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.556626
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background -primary TAMCCACTRVRCYAHVNVVSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.523301
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background -primary RTCGAACCSVKGAYCYYMYGRTTAMWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.403743
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background -primary CCRTACAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.233236
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.242721
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background -primary RCACCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.264467
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background -primary CACATYAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.234541
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background -primary CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.251499
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background -primary SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.361641
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background -primary CTTGTTRG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.220067
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background -primary GCGCTHCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.233345
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background -primary CCRTGGAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.214095
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background -primary ACACGCCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.26428
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background -primary AATCCMAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.220781
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background -primary AGTSTGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.214167
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background --motif TAMCCACTRVRCYAHVNVVSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.217631
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background --motif RTCGAACCSVKGAYCYYMYGRTTAMWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.222932
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background --motif CCRTACAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.120847
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.121368
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background --motif RCACCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.124607
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background --motif CACATYAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.12082
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background --motif CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.120961
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background --motif SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.105267
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background --motif CTTGTTRG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.12094
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background --motif GCGCTHCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.121049
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background --motif CCRTGGAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.120797
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background --motif ACACGCCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.119813
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background --motif AATCCMAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.120951
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/background --motif AGTSTGGC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/BY4742--AFT1.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.119978
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4742--AFT1/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.163811
Done