Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.041825
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.075829
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.07152
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.014257
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.066097
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background
Finished invoke:
  name: bg  status: 0  time: 0.011892
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 993.046693
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 103.42385
Invoking:
  centrimo -seqlen 344 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.198087
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.421477
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background -primary RNSSCBYWACCVACTVGGCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.405684
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background -primary GGRATCGAACCSVKGAYCTYHCSRTK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.399967
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background -primary HACAYCCRTACAYY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.342862
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background -primary TAAGGCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.277173
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.221154
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background -primary RAARAAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.259204
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background -primary GCCGTKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.222256
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background -primary GTGGAGAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.221231
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background -primary AAGCGWGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.232567
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background -primary GCCAYAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.212883
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background -primary RAAATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.397344
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background -primary GAGACCW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.226217
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background -primary TGTTGWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.257415
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background -primary GTATGAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.201596
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background --motif RNSSCBYWACCVACTVGGCC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.206487
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background --motif GGRATCGAACCSVKGAYCTYHCSRTK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.220088
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background --motif HACAYCCRTACAYY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.205573
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background --motif TAAGGCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.137398
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.125908
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background --motif RAARAAAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.126783
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background --motif GCCGTKAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.128917
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background --motif GTGGAGAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.123405
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background --motif AAGCGWGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.125768
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background --motif GCCAYAAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.126141
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background --motif RAAATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.107773
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background --motif GAGACCW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.126734
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background --motif TGTTGWA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.109368
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/background --motif GTATGAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/BY4741--ZAP1.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.120872
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--ZAP1/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.160383
Done