Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/BY4741--YAP3.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.062511 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/BY4741--YAP3.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.058479 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/BY4741--YAP3.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.088823 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.023956 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.075689 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/BY4741--YAP3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/background Finished invoke: name: bg status: 0 time: 0.018488 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 940.929192 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/seqs-shuffled Finished invoke: name: dreme status: 0 time: 46.872231 Invoking: centrimo -seqlen 476 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/BY4741--YAP3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.222719 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.588851 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/background -primary AGSBYNYDTGGCSYAGTGGKWARRGCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/BY4741--YAP3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.299363 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/background -primary SGGRHTCGAACYCVKGACCTYCHSATTAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/BY4741--YAP3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.270992 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/background -primary KGDGTGGTKWGKRTRTGGTGTRWRRGTGKK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/BY4741--YAP3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.228405 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/background -primary ATATAKAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/BY4741--YAP3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.195572 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/BY4741--YAP3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.177712 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/background -primary AAAAADAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/BY4741--YAP3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.234639 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/background -primary KGCGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/BY4741--YAP3.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.2027 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/background --motif AGSBYNYDTGGCSYAGTGGKWARRGCS /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/BY4741--YAP3.fa Finished invoke: name: fimo1 status: 0 time: 0.231713 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/background --motif SGGRHTCGAACYCVKGACCTYCHSATTAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/BY4741--YAP3.fa Finished invoke: name: fimo2 status: 0 time: 0.254137 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/background --motif KGDGTGGTKWGKRTRTGGTGTRWRRGTGKK /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/BY4741--YAP3.fa Finished invoke: name: fimo3 status: 0 time: 0.253211 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/background --motif ATATAKAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/BY4741--YAP3.fa Finished invoke: name: fimo4 status: 0 time: 0.177119 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/BY4741--YAP3.fa Finished invoke: name: fimo5 status: 0 time: 0.151463 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/background --motif AAAAADAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/BY4741--YAP3.fa Finished invoke: name: fimo6 status: 0 time: 0.172233 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/background --motif KGCGCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/BY4741--YAP3.fa Finished invoke: name: fimo7 status: 0 time: 0.149549 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP3/summary.tsv Finished invoke: name: summary status: 0 time: 0.241436 Done