Invoking: getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/BY4741--YAP1.fa 1> $metrics Finished invoke: name: count_seqs status: 0 time: 0.033176 Invoking: fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/BY4741--YAP1.fa 1> $metrics Finished invoke: name: most_seqs status: 0 time: 0.061767 Invoking: fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/BY4741--YAP1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/seqs-centered Finished invoke: name: center_seqs status: 0 time: 0.100168 Invoking: fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1 Finished invoke: name: shuffle_seqs status: 0 time: 0.037563 Invoking: fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/seqs-sampled Finished invoke: name: sample_seqs status: 0 time: 0.091442 Invoking: fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/BY4741--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/background Finished invoke: name: bg status: 0 time: 0.032995 Invoking: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/background -dna -revcomp -nostatus Finished invoke: name: meme status: 0 time: 968.782903 Invoking: dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/seqs-shuffled Finished invoke: name: dreme status: 0 time: 45.999616 Invoking: centrimo -seqlen 420 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/BY4741--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/dreme_out/dreme.xml Finished invoke: name: centrimo status: 0 time: 0.238325 Invoking: tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/motif_alignment.txt Finished invoke: name: align status: 0 time: 0.45301 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/background -primary AWDWGSBYKYKTGGYSYAGTGGKWWG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/BY4741--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo1 status: 0 time: 0.293333 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/background -primary BTBNTAAYCKDDRGRTCCBGRGTTCGAYYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/BY4741--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo2 status: 0 time: 0.251309 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/background -primary GGTGTGKGTGTGGGTGTGGTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/BY4741--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo3 status: 0 time: 0.215589 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/background -primary TTTTCTB /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/BY4741--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo4 status: 0 time: 0.219568 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/BY4741--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo5 status: 0 time: 0.172035 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/background -primary AGTMATAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/BY4741--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo6 status: 0 time: 0.163954 Invoking: spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/background -primary ATAKTGTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/BY4741--YAP1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/dreme_out/dreme.xml Finished invoke: name: spamo7 status: 0 time: 0.164737 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/background --motif AWDWGSBYKYKTGGYSYAGTGGKWWG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/BY4741--YAP1.fa Finished invoke: name: fimo1 status: 0 time: 0.228064 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/background --motif BTBNTAAYCKDDRGRTCCBGRGTTCGAYYC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/BY4741--YAP1.fa Finished invoke: name: fimo2 status: 0 time: 0.228282 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/background --motif GGTGTGKGTGTGGGTGTGGTG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/BY4741--YAP1.fa Finished invoke: name: fimo3 status: 0 time: 0.255062 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/background --motif TTTTCTB /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/BY4741--YAP1.fa Finished invoke: name: fimo4 status: 0 time: 0.126752 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/BY4741--YAP1.fa Finished invoke: name: fimo5 status: 0 time: 0.1538 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/background --motif AGTMATAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/BY4741--YAP1.fa Finished invoke: name: fimo6 status: 0 time: 0.147897 Invoking: fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/background --motif ATAKTGTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/BY4741--YAP1.fa Finished invoke: name: fimo7 status: 0 time: 0.164919 Writing output Invoking: meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/summary.tsv Finished invoke: name: summary status: 0 time: 0.241138 Done