******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrXV:43247-43630 1.0000 100 chrIV:491554-491974 1.0000 100 chrVII:23786-24206 1.0000 100 chrXII:232243-232476 1.0000 100 chrX:383294-383394 1.0000 100 chrIV:416778-417264 1.0000 100 chrXI:24862-25118 1.0000 100 chrIV:339354-339774 1.0000 100 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chrXVI:785580-786000 1.0000 100 chrXV:87450-87842 1.0000 100 chrXIII:806517-806937 1.0000 100 chrVII:702385-702601 1.0000 100 chrX:378212-378312 1.0000 100 chrIV:915922-916161 1.0000 100 chrXVI:407627-407732 1.0000 100 chrV:435696-435982 1.0000 100 chrXI:109727-109880 1.0000 100 chrXI:302737-303032 1.0000 100 chrV:423466-423886 1.0000 100 chrII:165811-166231 1.0000 100 chrXIII:267831-268286 1.0000 100 chrIV:428425-428667 1.0000 100 chrVII:649107-649285 1.0000 100 chrIV:1450068-1450183 1.0000 100 chrXIII:572870-573131 1.0000 100 chrVII:883757-884075 1.0000 100 chrXIV:507349-507582 1.0000 100 chrXIII:168620-168888 1.0000 100 chrIV:946150-946570 1.0000 100 chrXII:214903-215051 1.0000 100 chrIV:1201582-1201977 1.0000 100 chrX:139975-140075 1.0000 100 chrXVI:171668-172088 1.0000 100 chrXV:1003890-1004310 1.0000 100 chrXV:760650-761070 1.0000 100 chrV:141619-142039 1.0000 100 chrXI:453935-454355 1.0000 100 chrXV:447077-447497 1.0000 100 chrVII:930916-931203 1.0000 100 chrVII:601226-601356 1.0000 100 chrXIV:616415-616835 1.0000 100 chrXV:908149-908569 1.0000 100 chrVII:959367-959551 1.0000 100 chrXVI:280795-281094 1.0000 100 chrII:89364-89480 1.0000 100 chrXIV:499526-499692 1.0000 100 chrXII:366129-366428 1.0000 100 chrXII:233087-233285 1.0000 100 chrIV:483844-484264 1.0000 100 chrVII:439170-439340 1.0000 100 chrX:516102-516202 1.0000 100 chrVII:364244-364349 1.0000 100 chrIV:1239824-1240021 1.0000 100 chrIII:10979-11399 1.0000 100 chrVI:4527-4866 1.0000 100 chrXVI:929909-930329 1.0000 100 chrIV:456532-456952 1.0000 100 chrXII:441344-441472 1.0000 100 chrIV:512640-513060 1.0000 100 chrXII:368104-368830 1.0000 100 chrXIII:499739-500159 1.0000 100 chrIV:137335-137755 1.0000 100 chrXV:779932-780391 1.0000 100 chrVII:876247-876490 1.0000 100 chrXVI:654459-654593 1.0000 100 chrI:141611-141966 1.0000 100 chrXVI:875917-876337 1.0000 100 chrXIV:174357-174574 1.0000 100 chrVIII:361834-362254 1.0000 100 chrXIV:88915-89564 1.0000 100 chrXI:334114-334408 1.0000 100 chrV:102311-102449 1.0000 100 chrX:422799-422899 1.0000 100 chrXVI:575268-575688 1.0000 100 chrIV:1360804-1361112 1.0000 100 chrIX:300133-300493 1.0000 100 chrV:434520-434768 1.0000 100 chrIV:668029-668169 1.0000 100 chrIII:114356-114604 1.0000 100 chrVIII:382428-382688 1.0000 100 chrVII:724506-724926 1.0000 100 chrV:235493-235708 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 589 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 58900 N= 589 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.335 C 0.165 G 0.165 T 0.335 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--YAP1/background): A 0.331 C 0.169 G 0.169 T 0.331 ******************************************************************************** ******************************************************************************** MOTIF AWDWGSBYKYKTGGYSYAGTGGKWWG MEME-1 width = 26 sites = 68 llr = 1051 E-value = 9.8e-148 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWDWGSBYKYKTGGYSYAGTGGKWWG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5534:::1111:3::1:82::::363 pos.-specific C 1111:43413::::533:::2::::1 probability G 213:a442415:7a:512726a4216 matrix T 1435:233454a::526:182:6541 bits 2.6 * * 2.3 * * * 2.1 * * * 1.8 * * * Relative 1.5 * *** * Entropy 1.3 * *** * (22.3 bits) 1.0 ** **** ** ** 0.8 *** **** ****** * 0.5 *** ************* ** 0.3 * ************************ 0.0 -------------------------- Multilevel AAGTGCGCGTGTGGCGTAGTGGTTAG consensus GTTA GTTTCT A TCC GATA sequence A C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWDWGSBYKYKTGGYSYAGTGGKWWG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------- chrVII:774216-774426 + 74 2.40e-13 TTCATCAATT AATTGGGCGTGTGGCGTAGTCGGTAG C chrXVI:856795-857067 + 17 6.69e-12 TTACAACAAG ATTCGGGCGTGTGGCGTAGTCGGTAG CGCGCTCCCT chrXII:92369-92678 + 71 8.34e-12 TCACAAGTTA ATAAGGGCGTGTGGTCTAGTGGTATG ATTC chrXI:517861-518091 + 58 8.34e-12 AATATATCTA CTATGGGCGTGTGGCGTAGTCGGTAG CGCGCTCCCT chrVIII:388825-389160 - 32 2.37e-11 ACCAACAGAT ACATGGGCGTGTGGTCTAGTGGTATG ATTCTCGCTT chrXV:464258-464623 + 56 2.37e-11 CAACAAGTTA ACAAGGGCGTGTGGTCTAGTGGTATG ATTCTCGCTT chrXIV:567950-568226 + 73 4.27e-11 ACCATAAAAT AATCGGGCGTGTGGTCTAGTGGTATG AT chrXV:300940-301204 + 71 6.23e-11 TCTCAGAAAA GATCGGGCGTGTGGTCTAGTGGTATG ATTC chrIV:884210-884477 + 64 1.28e-10 TCTCTTTCGA AAATGCTCGTGTAGCTCAGTGGTTAG AGCTTCGTGC chrV:435696-435982 - 14 1.38e-09 AAACAACAAT AAGAGCCTTGTTGGCGCAATCGGTAG CGCGTATGAC chrXVI:581944-582168 + 52 1.38e-09 ATTTCAACAA AAGAGCCTTGTTGGCGCAATCGGTAG CGCGTATGAC chrIX:300133-300493 - 16 3.17e-09 TTTCCAACGA AATAGCCTTGTTGGCGCAATCGGTAG CGCGTATGAC chrVII:876247-876490 + 72 3.17e-09 CCAATAATAG AATAGCCTTGTTGGCGCAATCGGTAG CGC chrIV:1201582-1201977 + 17 3.17e-09 GTCACAAATA AATAGCCTTGTTGGCGCAATCGGTAG CGCGTATGAC chrVII:185653-185886 - 46 3.17e-09 TTTTCAACGA AATAGCCTTGTTGGCGCAATCGGTAG CGCGTATGAC chrIV:668029-668169 - 10 3.63e-09 TTTCGATCCA AATTGGTCTCTTGGCCCAGTTGGTTA AGGCACCGT chrXI:202888-203132 + 35 3.63e-09 AATCACGTTT AAAAGCCTTGTTGGCGCAATCGGTAG CGCGTATGAC chrX:378212-378312 + 61 4.14e-09 TTCATAAATT AATAGGTTTCGTGGTCTAGTCGGTTA TGGCATCTGC chrXII:214903-215051 - 7 4.71e-09 TTGTACGCGT TTTAGGGCACATGGCGCAGTTGGTAG CGCGCT chrXVI:775672-775977 - 41 5.36e-09 ACCATAATTC AAAAGCTCGTATGGCGCAGTGGTAGC GCAGCAGATT chrV:438547-438844 + 51 5.36e-09 TTTTCAACAA ATTAGGTTTCGTGGTCTAGTCGGTTA TGGCATCTGC chrXVI:435757-436133 - 48 5.36e-09 ACTATACAAC AAAAGCTCGTATGGCGCAGTGGTAGC GCAGCAGATT chrVIII:85264-85507 - 15 5.36e-09 ATCAATAAGA ATTTGGTTTCGTGGTCTAGTCGGTTA TGGCATCTGC chrXIV:569698-570118 - 61 6.90e-09 AAACAGATAA CAGTGGTCTCTTGGCCCAGTTGGTTA AGGCACCGTG chrVIII:562347-562582 + 40 7.81e-09 TAGATGTGAA AAGTGTGGGTGTGGTGTGTGGGTGTG GGTGTGTGTG chrXI:666580-666739 + 73 1.27e-08 TGTGGTGTGG GTGTGTGGGTGTGGTGTGTGGGTGTG TG chrXIII:5402-5694 - 63 1.27e-08 TTGTGTTAGG GTGTGTGGGTGTGGTGTGTGGGTGTG GGTGTGGTGT chrIII:316436-316607 + 64 1.27e-08 GTGGGTGTGG GTGTGTGGGTGTGGTGTGTGGGTGTG GTGTGTGTGG chrXII:1064977-1065248 + 19 1.42e-08 GTGGTGTGGT GTGTGTGTGTGTGGTGTGTGGGTGTG GTGGGTGTGG chrX:531677-531777 + 74 1.42e-08 TTAACAATTA GTGAGCGCAAGTGGTTTAGTGGTAAA A chrVIII:132903-133350 - 10 1.60e-08 CTTATATAAT AAGTGGCAACTTGGCCGAGTGGTTAA GGCGAAAGA chrXII:5546-5807 - 71 1.79e-08 GAGT GTGTGGGTGTGTGGTGTGTGTGGGTG TGGGTGTGGT chrI:230074-230214 + 31 2.25e-08 TTAGGGTGTG GTGTGTGGGTGTGGTGTGGGTGTGGG TGTGGGTGTG chrXII:11114-11397 - 63 2.80e-08 GGTGTGGTGT GGGTGTGGGTGTGGTGTGTGGGTGTG GTGTGTGTGG chrIV:51-207 - 38 2.80e-08 TGTGGTGTGT GGGTGTGGGTGTGGTGTGTGGGTGTG GGTGTGGTGT chrIII:142656-142936 - 4 3.87e-08 TATCAAGATT ACTAGCGCAAGTGGTTTAGTGGTAAA ATC chrVII:440427-441099 - 73 4.30e-08 AT ATATGCGGATTTAGCTCAGTTGGGAG AGCGCCAGAC chrVII:319647-319956 + 26 4.30e-08 TCATAAAGAA ATTAGCCATCTTAGTATAGTGGTTAG TACACATCGT chrVI:162064-162376 + 54 4.30e-08 TCACAAGAAA ACAAGCGCAAGTGGTTTAGTGGTAAA ATCCAACGTT chrXIII:352182-352397 + 37 4.30e-08 ATATATGAAT ATAAGCGGATTTAGCTCAGTTGGGAG AGCGCCAGAC chrVII:706966-707308 - 71 4.77e-08 AAAA TCAAGCTCGTATGGCGCAGTGGTAGC GCAGCAGATT chrV:551300-551446 - 14 4.77e-08 TAACACAGAT TACAGGTCTCTTGGCCCAGTTGGTTA AGGCACCGTG chrXI:313363-313636 - 2 5.29e-08 CTTCACAGTT GTTTGCCATCTTAGTATAGTGGTTAG T chrXIII:362932-363221 + 34 5.29e-08 AACAATCCAA GTTTGCCATCTTAGTATAGTGGTTAG TACACATCGT chrV:131059-131302 - 2 6.48e-08 ATCAATAATT AAGAGGTTTTATAGTGTAGTGGTTAT C chrXVI:560172-560407 - 29 7.16e-08 AGCATAGAAA TTGAGCGGATTTAGCTCAGTTGGGAG AGCGCCAGAC chrVI:4527-4866 - 72 7.90e-08 GTG TGGTGTGGGTGTGGTGTGTGGGTGTG GGTGTGTGGG chrXIII:808166-808475 - 26 8.71e-08 CAACAGAAGA AAAAGGTCCTATAGTGTAGTGGTTAT CACTTTCGGT chrVII:561634-561886 - 12 9.59e-08 GCAATGTATA CATTGGCAACTTGGCCGAGTGGTTAA GGCGAAAGAT chrVII:828599-828966 - 41 1.05e-07 TCCAACAAAC AGTAGCTCGCGTGGCGTAATGGCAAC GCGTCTGACT chrXIV:631821-632027 - 22 1.16e-07 AAACAACTTC TACCGGGCGTGTGGTCTAGAGGTATG ATTCTCGCTT chrVII:205302-205722 + 55 1.16e-07 ACATACAAAT AAGTGGTTGTTTGGCCGAGCGGTCTA AGGCGCCTGA chrXII:628204-628587 + 34 1.16e-07 TACAACAAAT AAGTGGTTGTTTGGCCGAGCGGTCTA AGGCGCCTGA chrVII:661570-661882 + 69 1.53e-07 CTTGGTAAAA ATTTGCCTCCTTAGCTTAGTGGTAGA GCGTTG chrV:207199-207546 + 31 1.53e-07 TTTTATATAA GTTCGCCATCTTAGTATAGTGGTTAG TACACATCGT chrVII:110488-110865 - 49 1.83e-07 CTCAATAATT ACCTGCCATCTTAGTATAGTGGTTAG TACACATCGT chrV:431212-431550 - 14 2.60e-07 CTAGATTTTG TAGTGCCCTCTTGGGCTAGCGGTAAA GGTGCGCATT chrII:350662-350950 + 67 4.62e-07 ACCATCAATA AAAGGGTTTTATAGTGTAGTGGTTAT CACTTTCG chrV:306410-306830 - 62 4.62e-07 ATAGTCCAAA AAAGGTTCCTGTAGCATAATGGTTAG CTAGATATCA chrX:422799-422899 + 70 6.30e-07 AACATCCTTT GTATGCTTCAGTAGCTCAGTAGGAAG AGCGT chrX:390927-391027 - 51 6.80e-07 GAACAAGAAA TAGTGCTTCAGTAGCTCAGTAGGAAG AGCGTCAGTC chrIV:520844-521061 + 66 9.81e-07 ATCGTCCATT TTAGGGTCCTATAGTGTAGTGGTTAT CACTTTCGG chrIV:1175708-1175983 + 30 1.05e-06 CTGTACAAAA CAAAGCTTCAGTAGCTCAGTAGGAAG AGCGTCAGTC chrIV:434200-434513 - 9 1.59e-06 AACACAAATC AGAAGCTTCTATGGCCAAGTTGGTAA GGCGCCAC chrVIII:556790-557103 + 7 2.06e-06 GGGTGT GGGTGTGGTGTGGGTGTGGGTGTGTG TGGGTGTGTG chrV:441854-442111 + 61 2.81e-06 TGCTAGGCTG TAATGGCTTTCTGGTGGGATGGGATA CGTTGAGAAT chrVII:115359-115685 + 12 4.23e-06 ATCCGAAGAA CTCATCCTTGTTAGCTCAGTTGGTAG AGCGTTCGGC chrV:492280-492566 - 30 4.48e-06 CACTGAACAT CCTATTCCTCGTGGCCCAATGGTCAC GGCGTCTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWDWGSBYKYKTGGYSYAGTGGKWWG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrVII:774216-774426 2.4e-13 73_[+1]_1 chrXVI:856795-857067 6.7e-12 16_[+1]_58 chrXII:92369-92678 8.3e-12 70_[+1]_4 chrXI:517861-518091 8.3e-12 57_[+1]_17 chrVIII:388825-389160 2.4e-11 31_[-1]_43 chrXV:464258-464623 2.4e-11 55_[+1]_19 chrXIV:567950-568226 4.3e-11 72_[+1]_2 chrXV:300940-301204 6.2e-11 70_[+1]_4 chrIV:884210-884477 1.3e-10 63_[+1]_11 chrV:435696-435982 1.4e-09 13_[-1]_61 chrXVI:581944-582168 1.4e-09 51_[+1]_23 chrIX:300133-300493 3.2e-09 15_[-1]_59 chrVII:876247-876490 3.2e-09 71_[+1]_3 chrIV:1201582-1201977 3.2e-09 16_[+1]_58 chrVII:185653-185886 3.2e-09 45_[-1]_29 chrIV:668029-668169 3.6e-09 9_[-1]_65 chrXI:202888-203132 3.6e-09 34_[+1]_40 chrX:378212-378312 4.1e-09 60_[+1]_14 chrXII:214903-215051 4.7e-09 6_[-1]_68 chrXVI:775672-775977 5.4e-09 40_[-1]_34 chrV:438547-438844 5.4e-09 50_[+1]_24 chrXVI:435757-436133 5.4e-09 47_[-1]_27 chrVIII:85264-85507 5.4e-09 14_[-1]_60 chrXIV:569698-570118 6.9e-09 60_[-1]_14 chrVIII:562347-562582 7.8e-09 39_[+1]_35 chrXI:666580-666739 1.3e-08 72_[+1]_2 chrXIII:5402-5694 1.3e-08 62_[-1]_12 chrIII:316436-316607 1.3e-08 63_[+1]_11 chrXII:1064977-1065248 1.4e-08 18_[+1]_56 chrX:531677-531777 1.4e-08 73_[+1]_1 chrVIII:132903-133350 1.6e-08 9_[-1]_65 chrXII:5546-5807 1.8e-08 70_[-1]_4 chrI:230074-230214 2.2e-08 30_[+1]_44 chrXII:11114-11397 2.8e-08 62_[-1]_12 chrIV:51-207 2.8e-08 37_[-1]_37 chrIII:142656-142936 3.9e-08 3_[-1]_71 chrVII:440427-441099 4.3e-08 72_[-1]_2 chrVII:319647-319956 4.3e-08 25_[+1]_49 chrVI:162064-162376 4.3e-08 53_[+1]_21 chrXIII:352182-352397 4.3e-08 36_[+1]_38 chrVII:706966-707308 4.8e-08 70_[-1]_4 chrV:551300-551446 4.8e-08 13_[-1]_61 chrXI:313363-313636 5.3e-08 1_[-1]_73 chrXIII:362932-363221 5.3e-08 33_[+1]_41 chrV:131059-131302 6.5e-08 1_[-1]_73 chrXVI:560172-560407 7.2e-08 28_[-1]_46 chrVI:4527-4866 7.9e-08 71_[-1]_3 chrXIII:808166-808475 8.7e-08 25_[-1]_49 chrVII:561634-561886 9.6e-08 11_[-1]_63 chrVII:828599-828966 1.1e-07 40_[-1]_34 chrXIV:631821-632027 1.2e-07 21_[-1]_53 chrVII:205302-205722 1.2e-07 54_[+1]_20 chrXII:628204-628587 1.2e-07 33_[+1]_41 chrVII:661570-661882 1.5e-07 68_[+1]_6 chrV:207199-207546 1.5e-07 30_[+1]_44 chrVII:110488-110865 1.8e-07 48_[-1]_26 chrV:431212-431550 2.6e-07 13_[-1]_61 chrII:350662-350950 4.6e-07 66_[+1]_8 chrV:306410-306830 4.6e-07 61_[-1]_13 chrX:422799-422899 6.3e-07 69_[+1]_5 chrX:390927-391027 6.8e-07 50_[-1]_24 chrIV:520844-521061 9.8e-07 65_[+1]_9 chrIV:1175708-1175983 1.1e-06 29_[+1]_45 chrIV:434200-434513 1.6e-06 8_[-1]_66 chrVIII:556790-557103 2.1e-06 6_[+1]_68 chrV:441854-442111 2.8e-06 60_[+1]_14 chrVII:115359-115685 4.2e-06 11_[+1]_63 chrV:492280-492566 4.5e-06 29_[-1]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWDWGSBYKYKTGGYSYAGTGGKWWG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWDWGSBYKYKTGGYSYAGTGGKWWG width=26 seqs=68 chrVII:774216-774426 ( 74) AATTGGGCGTGTGGCGTAGTCGGTAG 1 chrXVI:856795-857067 ( 17) ATTCGGGCGTGTGGCGTAGTCGGTAG 1 chrXII:92369-92678 ( 71) ATAAGGGCGTGTGGTCTAGTGGTATG 1 chrXI:517861-518091 ( 58) CTATGGGCGTGTGGCGTAGTCGGTAG 1 chrVIII:388825-389160 ( 32) ACATGGGCGTGTGGTCTAGTGGTATG 1 chrXV:464258-464623 ( 56) ACAAGGGCGTGTGGTCTAGTGGTATG 1 chrXIV:567950-568226 ( 73) AATCGGGCGTGTGGTCTAGTGGTATG 1 chrXV:300940-301204 ( 71) GATCGGGCGTGTGGTCTAGTGGTATG 1 chrIV:884210-884477 ( 64) AAATGCTCGTGTAGCTCAGTGGTTAG 1 chrV:435696-435982 ( 14) AAGAGCCTTGTTGGCGCAATCGGTAG 1 chrXVI:581944-582168 ( 52) AAGAGCCTTGTTGGCGCAATCGGTAG 1 chrIX:300133-300493 ( 16) AATAGCCTTGTTGGCGCAATCGGTAG 1 chrVII:876247-876490 ( 72) AATAGCCTTGTTGGCGCAATCGGTAG 1 chrIV:1201582-1201977 ( 17) AATAGCCTTGTTGGCGCAATCGGTAG 1 chrVII:185653-185886 ( 46) AATAGCCTTGTTGGCGCAATCGGTAG 1 chrIV:668029-668169 ( 10) AATTGGTCTCTTGGCCCAGTTGGTTA 1 chrXI:202888-203132 ( 35) AAAAGCCTTGTTGGCGCAATCGGTAG 1 chrX:378212-378312 ( 61) AATAGGTTTCGTGGTCTAGTCGGTTA 1 chrXII:214903-215051 ( 7) TTTAGGGCACATGGCGCAGTTGGTAG 1 chrXVI:775672-775977 ( 41) AAAAGCTCGTATGGCGCAGTGGTAGC 1 chrV:438547-438844 ( 51) ATTAGGTTTCGTGGTCTAGTCGGTTA 1 chrXVI:435757-436133 ( 48) AAAAGCTCGTATGGCGCAGTGGTAGC 1 chrVIII:85264-85507 ( 15) ATTTGGTTTCGTGGTCTAGTCGGTTA 1 chrXIV:569698-570118 ( 61) CAGTGGTCTCTTGGCCCAGTTGGTTA 1 chrVIII:562347-562582 ( 40) AAGTGTGGGTGTGGTGTGTGGGTGTG 1 chrXI:666580-666739 ( 73) GTGTGTGGGTGTGGTGTGTGGGTGTG 1 chrXIII:5402-5694 ( 63) GTGTGTGGGTGTGGTGTGTGGGTGTG 1 chrIII:316436-316607 ( 64) GTGTGTGGGTGTGGTGTGTGGGTGTG 1 chrXII:1064977-1065248 ( 19) GTGTGTGTGTGTGGTGTGTGGGTGTG 1 chrX:531677-531777 ( 74) GTGAGCGCAAGTGGTTTAGTGGTAAA 1 chrVIII:132903-133350 ( 10) AAGTGGCAACTTGGCCGAGTGGTTAA 1 chrXII:5546-5807 ( 71) GTGTGGGTGTGTGGTGTGTGTGGGTG 1 chrI:230074-230214 ( 31) GTGTGTGGGTGTGGTGTGGGTGTGGG 1 chrXII:11114-11397 ( 63) GGGTGTGGGTGTGGTGTGTGGGTGTG 1 chrIV:51-207 ( 38) GGGTGTGGGTGTGGTGTGTGGGTGTG 1 chrIII:142656-142936 ( 4) ACTAGCGCAAGTGGTTTAGTGGTAAA 1 chrVII:440427-441099 ( 73) ATATGCGGATTTAGCTCAGTTGGGAG 1 chrVII:319647-319956 ( 26) ATTAGCCATCTTAGTATAGTGGTTAG 1 chrVI:162064-162376 ( 54) ACAAGCGCAAGTGGTTTAGTGGTAAA 1 chrXIII:352182-352397 ( 37) ATAAGCGGATTTAGCTCAGTTGGGAG 1 chrVII:706966-707308 ( 71) TCAAGCTCGTATGGCGCAGTGGTAGC 1 chrV:551300-551446 ( 14) TACAGGTCTCTTGGCCCAGTTGGTTA 1 chrXI:313363-313636 ( 2) GTTTGCCATCTTAGTATAGTGGTTAG 1 chrXIII:362932-363221 ( 34) GTTTGCCATCTTAGTATAGTGGTTAG 1 chrV:131059-131302 ( 2) AAGAGGTTTTATAGTGTAGTGGTTAT 1 chrXVI:560172-560407 ( 29) TTGAGCGGATTTAGCTCAGTTGGGAG 1 chrVI:4527-4866 ( 72) TGGTGTGGGTGTGGTGTGTGGGTGTG 1 chrXIII:808166-808475 ( 26) AAAAGGTCCTATAGTGTAGTGGTTAT 1 chrVII:561634-561886 ( 12) CATTGGCAACTTGGCCGAGTGGTTAA 1 chrVII:828599-828966 ( 41) AGTAGCTCGCGTGGCGTAATGGCAAC 1 chrXIV:631821-632027 ( 22) TACCGGGCGTGTGGTCTAGAGGTATG 1 chrVII:205302-205722 ( 55) AAGTGGTTGTTTGGCCGAGCGGTCTA 1 chrXII:628204-628587 ( 34) AAGTGGTTGTTTGGCCGAGCGGTCTA 1 chrVII:661570-661882 ( 69) ATTTGCCTCCTTAGCTTAGTGGTAGA 1 chrV:207199-207546 ( 31) GTTCGCCATCTTAGTATAGTGGTTAG 1 chrVII:110488-110865 ( 49) ACCTGCCATCTTAGTATAGTGGTTAG 1 chrV:431212-431550 ( 14) TAGTGCCCTCTTGGGCTAGCGGTAAA 1 chrII:350662-350950 ( 67) AAAGGGTTTTATAGTGTAGTGGTTAT 1 chrV:306410-306830 ( 62) AAAGGTTCCTGTAGCATAATGGTTAG 1 chrX:422799-422899 ( 70) GTATGCTTCAGTAGCTCAGTAGGAAG 1 chrX:390927-391027 ( 51) TAGTGCTTCAGTAGCTCAGTAGGAAG 1 chrIV:520844-521061 ( 66) TTAGGGTCCTATAGTGTAGTGGTTAT 1 chrIV:1175708-1175983 ( 30) CAAAGCTTCAGTAGCTCAGTAGGAAG 1 chrIV:434200-434513 ( 9) AGAAGCTTCTATGGCCAAGTTGGTAA 1 chrVIII:556790-557103 ( 7) GGGTGTGGTGTGGGTGTGGGTGTGTG 1 chrV:441854-442111 ( 61) TAATGGCTTTCTGGTGGGATGGGATA 1 chrVII:115359-115685 ( 12) CTCATCCTTGTTAGCTCAGTTGGTAG 1 chrV:492280-492566 ( 30) CCTATTCCTCGTGGCCCAATGGTCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWDWGSBYKYKTGGYSYAGTGGKWWG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 26 n= 44175 bayes= 10.1369 E= 9.8e-148 72 -94 38 -117 46 -72 -94 9 -17 -152 94 -3 37 -120 -194 46 -1273 -1273 252 -349 -1273 138 118 -91 -1273 72 123 -3 -168 118 6 3 -132 -52 118 15 -191 65 -35 64 -132 -352 148 21 -1273 -1273 -352 157 -24 -1273 209 -1273 -1273 -1273 256 -1273 -1273 156 -352 55 -191 72 143 -91 -449 100 -120 79 132 -1273 6 -1273 -103 -1273 206 -132 -449 -194 -6 124 -291 18 180 -91 -1273 -1273 256 -1273 -1273 -352 123 83 -24 -194 28 51 76 -1273 -120 15 -40 -120 187 -249 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWDWGSBYKYKTGGYSYAGTGGKWWG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 26 nsites= 68 E= 9.8e-148 0.544118 0.088235 0.220588 0.147059 0.455882 0.102941 0.088235 0.352941 0.294118 0.058824 0.323529 0.323529 0.426471 0.073529 0.044118 0.455882 0.000000 0.000000 0.970588 0.029412 0.000000 0.441176 0.382353 0.176471 0.000000 0.279412 0.397059 0.323529 0.102941 0.382353 0.176471 0.338235 0.132353 0.117647 0.382353 0.367647 0.088235 0.264706 0.132353 0.514706 0.132353 0.014706 0.470588 0.382353 0.000000 0.000000 0.014706 0.985294 0.279412 0.000000 0.720588 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.014706 0.485294 0.088235 0.279412 0.455882 0.176471 0.014706 0.338235 0.073529 0.573529 0.823529 0.000000 0.176471 0.000000 0.161765 0.000000 0.705882 0.132353 0.014706 0.044118 0.161765 0.779412 0.044118 0.191176 0.588235 0.176471 0.000000 0.000000 1.000000 0.000000 0.000000 0.014706 0.397059 0.588235 0.279412 0.044118 0.205882 0.470588 0.558824 0.000000 0.073529 0.367647 0.250000 0.073529 0.617647 0.058824 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWDWGSBYKYKTGGYSYAGTGGKWWG MEME-1 regular expression -------------------------------------------------------------------------------- [AG][AT][GTA][TA]G[CG][GTC][CT][GT][TC][GT]T[GA]G[CT][GC][TC]AGTGG[TG][TAG][AT][GA] -------------------------------------------------------------------------------- Time 342.16 secs. ******************************************************************************** ******************************************************************************** MOTIF BTBNTAAYCKDDRGRTCCBGRGTTCGAYYC MEME-2 width = 30 sites = 26 llr = 550 E-value = 4.5e-074 ******************************************************************************** -------------------------------------------------------------------------------- Motif BTBNTAAYCKDDRGRTCCBGRGTTCGAYYC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :122267::2345343:21:3::::1a1:: pos.-specific C 4132121481::::::8631::::a::36a probability G 3:23:2212443376::2466a:::9:2:: matrix T 384371:5:3331::72:23::aa:::44: bits 2.6 * * * 2.3 * * * 2.1 * * ** * 1.8 * * * ** * Relative 1.5 * * ****** * Entropy 1.3 * * * ****** ** (30.5 bits) 1.0 * ** * ******* ** 0.8 * ** ***** ******** ** 0.5 ** *** *************** ** 0.3 ****************************** 0.0 ------------------------------ Multilevel CTTGTAATCGGAAGGTCCGGGGTTCGATCC consensus G CT C TTGGAAA ACTA CT sequence T C AT T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTBNTAAYCKDDRGRTCCBGRGTTCGAYYC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chrIV:1017019-1017424 - 48 6.57e-14 ATCACATCAC GTTCTCACCGTGGAGACCGGGGTTCGACTC CCCGCTTCGG chrVII:328390-328840 + 48 1.04e-12 ATCACATCAC GCTTTCACCGTGGAGACCGGGGTTCGACTC CCCGTATCGG chrVII:328390-328823 + 57 1.04e-12 ATCACATCAC GCTTTCACCGTGGAGACCGGGGTTCGACTC CCCGTATCGG chrXI:140849-141245 - 33 1.04e-12 ATCACATCAC GCTTTCACCGTGGAGACCGGGGTTCGACTC CCCGTATCGG chrIV:1201582-1201977 + 52 4.48e-12 GCGCGTATGA CTCTTAATCATAAGGTTAGGGGTTCGAGCC CCCTACAGGG chrVII:185653-185886 - 7 4.48e-12 GCGCGTATGA CTCTTAATCATAAGGTTAGGGGTTCGAGCC CCCTAC chrXI:202888-203132 + 70 4.48e-12 GCGCGTATGA CTCTTAATCATAAGGTTAGGGGTTCGAGCC C chrVII:828599-828966 - 3 1.33e-11 ACGCGTCTGA CTTCTAATCAGAAGATTATGGGTTCGACCC CC chrX:390927-391027 - 12 2.91e-11 GAGCGTCAGT CTCATAATCTGAAGGTCGAGAGTTCGAACC TCCCCTGGAG chrIV:1175708-1175983 + 65 2.91e-11 GAGCGTCAGT CTCATAATCTGAAGGTCGAGAGTTCGAACC TCCCCT chrVII:110488-110865 - 11 4.46e-11 AGTACACATC GTTGTGGCCGATGAAACCCTGGTTCGATTC TAGGAGATGG chrVII:319647-319956 + 60 4.46e-11 AGTACACATC GTTGTGGCCGATGAAACCCTGGTTCGATTC TAGGAGATGG chrXIII:362932-363221 + 68 4.46e-11 AGTACACATC GTTGTGGCCGATGAAACCCTGGTTCGATTC TAG chrXIV:569698-570118 - 21 4.46e-11 AGGCACCGTG CTAATAACGCGGGGATCAGCGGTTCGATCC CGCTAGAGAC chrV:207199-207546 + 65 4.46e-11 AGTACACATC GTTGTGGCCGATGAAACCCTGGTTCGATTC TAGGAG chrXVI:775672-775977 - 3 1.62e-10 GCGCAGCAGA TTGCAAATCTGTTGGTCCTTAGTTCGATCC TG chrXVI:435757-436133 - 10 1.62e-10 GCGCAGCAGA TTGCAAATCTGTTGGTCCTTAGTTCGATCC TGAGTGCGA chrVII:706966-707308 - 33 1.62e-10 GCGCAGCAGA TTGCAAATCTGTTGGTCCTTAGTTCGATCC TGAGTGCGAG chrVII:440427-441099 - 15 2.34e-10 AAACTTCGGT CAAGTTATCTGGAGGTCCTGTGTTCGATCC ACAGAATTCG chrIV:1075365-1075645 - 29 3.97e-10 TCACGTTGCC TTCACACGGCAAAGGTCCCGAGTTCGATCC TCGGTTGGAA chrXII:975896-976180 - 7 5.12e-10 AGGCGTGCGA CTGTTAATCGCAAGATCGTGAGTTCAACCC TCACTG chrIV:946150-946570 + 49 7.11e-10 AATTTATCAC TACGAAATCTTGAGATCGGGCGTTCGACTC GCCCCCGGGA chrIV:488599-489030 - 45 1.55e-09 AGACGTCGCC TTTACACGGCGAAGATCCCGAGTTCGAACC TCGGTTGGAT chrVII:115359-115685 + 70 4.41e-09 TTGCTTAAGC AAGGATACCGAAATGTCAGGGGTTCGAGCC C chrIV:619865-620072 - 63 1.18e-08 GCGTCTGG CTACGAACCAGAAGATTCCAGGTTCAAGTC CTGGCGGGGA chrXVI:856795-857067 + 52 1.32e-08 GCGCGCTCCC TTAGCATGGGAGAGGTCTCCGGTTCGATTC CGGACTCGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTBNTAAYCKDDRGRTCCBGRGTTCGAYYC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1017019-1017424 6.6e-14 47_[-2]_23 chrVII:328390-328840 1e-12 47_[+2]_23 chrVII:328390-328823 1e-12 56_[+2]_14 chrXI:140849-141245 1e-12 32_[-2]_38 chrIV:1201582-1201977 4.5e-12 51_[+2]_19 chrVII:185653-185886 4.5e-12 6_[-2]_64 chrXI:202888-203132 4.5e-12 69_[+2]_1 chrVII:828599-828966 1.3e-11 2_[-2]_68 chrX:390927-391027 2.9e-11 11_[-2]_59 chrIV:1175708-1175983 2.9e-11 64_[+2]_6 chrVII:110488-110865 4.5e-11 10_[-2]_60 chrVII:319647-319956 4.5e-11 59_[+2]_11 chrXIII:362932-363221 4.5e-11 67_[+2]_3 chrXIV:569698-570118 4.5e-11 20_[-2]_50 chrV:207199-207546 4.5e-11 64_[+2]_6 chrXVI:775672-775977 1.6e-10 2_[-2]_68 chrXVI:435757-436133 1.6e-10 9_[-2]_61 chrVII:706966-707308 1.6e-10 32_[-2]_38 chrVII:440427-441099 2.3e-10 14_[-2]_56 chrIV:1075365-1075645 4e-10 28_[-2]_42 chrXII:975896-976180 5.1e-10 6_[-2]_64 chrIV:946150-946570 7.1e-10 48_[+2]_22 chrIV:488599-489030 1.5e-09 44_[-2]_26 chrVII:115359-115685 4.4e-09 69_[+2]_1 chrIV:619865-620072 1.2e-08 62_[-2]_8 chrXVI:856795-857067 1.3e-08 51_[+2]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTBNTAAYCKDDRGRTCCBGRGTTCGAYYC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BTBNTAAYCKDDRGRTCCBGRGTTCGAYYC width=30 seqs=26 chrIV:1017019-1017424 ( 48) GTTCTCACCGTGGAGACCGGGGTTCGACTC 1 chrVII:328390-328840 ( 48) GCTTTCACCGTGGAGACCGGGGTTCGACTC 1 chrVII:328390-328823 ( 57) GCTTTCACCGTGGAGACCGGGGTTCGACTC 1 chrXI:140849-141245 ( 33) GCTTTCACCGTGGAGACCGGGGTTCGACTC 1 chrIV:1201582-1201977 ( 52) CTCTTAATCATAAGGTTAGGGGTTCGAGCC 1 chrVII:185653-185886 ( 7) CTCTTAATCATAAGGTTAGGGGTTCGAGCC 1 chrXI:202888-203132 ( 70) CTCTTAATCATAAGGTTAGGGGTTCGAGCC 1 chrVII:828599-828966 ( 3) CTTCTAATCAGAAGATTATGGGTTCGACCC 1 chrX:390927-391027 ( 12) CTCATAATCTGAAGGTCGAGAGTTCGAACC 1 chrIV:1175708-1175983 ( 65) CTCATAATCTGAAGGTCGAGAGTTCGAACC 1 chrVII:110488-110865 ( 11) GTTGTGGCCGATGAAACCCTGGTTCGATTC 1 chrVII:319647-319956 ( 60) GTTGTGGCCGATGAAACCCTGGTTCGATTC 1 chrXIII:362932-363221 ( 68) GTTGTGGCCGATGAAACCCTGGTTCGATTC 1 chrXIV:569698-570118 ( 21) CTAATAACGCGGGGATCAGCGGTTCGATCC 1 chrV:207199-207546 ( 65) GTTGTGGCCGATGAAACCCTGGTTCGATTC 1 chrXVI:775672-775977 ( 3) TTGCAAATCTGTTGGTCCTTAGTTCGATCC 1 chrXVI:435757-436133 ( 10) TTGCAAATCTGTTGGTCCTTAGTTCGATCC 1 chrVII:706966-707308 ( 33) TTGCAAATCTGTTGGTCCTTAGTTCGATCC 1 chrVII:440427-441099 ( 15) CAAGTTATCTGGAGGTCCTGTGTTCGATCC 1 chrIV:1075365-1075645 ( 29) TTCACACGGCAAAGGTCCCGAGTTCGATCC 1 chrXII:975896-976180 ( 7) CTGTTAATCGCAAGATCGTGAGTTCAACCC 1 chrIV:946150-946570 ( 49) TACGAAATCTTGAGATCGGGCGTTCGACTC 1 chrIV:488599-489030 ( 45) TTTACACGGCGAAGATCCCGAGTTCGAACC 1 chrVII:115359-115685 ( 70) AAGGATACCGAAATGTCAGGGGTTCGAGCC 1 chrIV:619865-620072 ( 63) CTACGAACCAGAAGATTCCAGGTTCAAGTC 1 chrXVI:856795-857067 ( 52) TTAGCATGGGAGAGGTCTCCGGTTCGATTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTBNTAAYCKDDRGRTCCBGRGTTCGAYYC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 41819 bayes= 11.1813 E= 4.5e-074 -310 118 86 -30 -152 -55 -1134 122 -110 67 18 22 -78 45 86 -30 -78 -55 -214 98 90 -14 -14 -210 114 -114 -14 -310 -1134 132 -55 48 -1134 232 -14 -1134 -78 -55 132 -30 -30 -214 118 -10 35 -1134 86 -30 70 -1134 103 -152 -10 -1134 195 -310 22 -1134 186 -1134 -10 -1134 -1134 107 -1134 225 -1134 -78 -52 177 -14 -310 -210 86 118 -52 -310 -114 186 -30 -10 -214 186 -310 -1134 -1134 256 -1134 -1134 -1134 -1134 160 -1134 -1134 -1134 160 -1134 256 -1134 -1134 -210 -1134 245 -1134 160 -1134 -1134 -1134 -152 67 18 35 -1134 177 -1134 35 -1134 256 -1134 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTBNTAAYCKDDRGRTCCBGRGTTCGAYYC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 26 E= 4.5e-074 0.038462 0.384615 0.307692 0.269231 0.115385 0.115385 0.000000 0.769231 0.153846 0.269231 0.192308 0.384615 0.192308 0.230769 0.307692 0.269231 0.192308 0.115385 0.038462 0.653846 0.615385 0.153846 0.153846 0.076923 0.730769 0.076923 0.153846 0.038462 0.000000 0.423077 0.115385 0.461538 0.000000 0.846154 0.153846 0.000000 0.192308 0.115385 0.423077 0.269231 0.269231 0.038462 0.384615 0.307692 0.423077 0.000000 0.307692 0.269231 0.538462 0.000000 0.346154 0.115385 0.307692 0.000000 0.653846 0.038462 0.384615 0.000000 0.615385 0.000000 0.307692 0.000000 0.000000 0.692308 0.000000 0.807692 0.000000 0.192308 0.230769 0.576923 0.153846 0.038462 0.076923 0.307692 0.384615 0.230769 0.038462 0.076923 0.615385 0.269231 0.307692 0.038462 0.615385 0.038462 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.076923 0.000000 0.923077 0.000000 1.000000 0.000000 0.000000 0.000000 0.115385 0.269231 0.192308 0.423077 0.000000 0.576923 0.000000 0.423077 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTBNTAAYCKDDRGRTCCBGRGTTCGAYYC MEME-2 regular expression -------------------------------------------------------------------------------- [CGT]T[TC][GTC]TAA[TC]C[GT][GTA][AGT][AG][GA][GA][TA]C[CA][GCT][GT][GA]GTTCGA[TC][CT]C -------------------------------------------------------------------------------- Time 653.23 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTGTGKGTGTGGGTGTGGTG MEME-3 width = 21 sites = 11 llr = 297 E-value = 4.9e-043 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTGTGKGTGTGGGTGTGGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::::::::::::::11: pos.-specific C ::::::::::::::::::::: probability G 97382a5a:a:a9a:a:a829 matrix T 13728:5:a:a:1:a:a:171 bits 2.6 * * * * * * * 2.3 * * * * * * * 2.1 * * * * *** * * * 1.8 * * * * * *** * * * Relative 1.5 ** * * ************ * Entropy 1.3 ** * * ************ * (38.9 bits) 1.0 ******************* * 0.8 ********************* 0.5 ********************* 0.3 ********************* 0.0 --------------------- Multilevel GGTGTGTGTGTGGGTGTGGTG consensus TG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGTGKGTGTGGGTGTGGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chrXII:1064977-1065248 + 71 6.75e-15 TGTGGGTGTG GGTGTGGGTGTGGGTGTGGTG TGTATATCT chrI:230074-230214 + 67 6.75e-15 TGTGGGTGTG GGTGTGGGTGTGGGTGTGGTG TGGTGTGTGG chrIV:51-207 - 12 6.75e-15 GTGTGGGTGT GGTGTGGGTGTGGGTGTGGTG TGGTGTGGTG chrVIII:556790-557103 + 65 6.75e-15 TGTGGGTGTG GGTGTGGGTGTGGGTGTGGTG TGTGTATATA chrXI:666580-666739 + 27 6.75e-15 GTGTGGGTGT GGTGTGGGTGTGGGTGTGGTG TGGGTGTGGT chrVIII:562347-562582 + 66 2.34e-14 TGTGGGTGTG GGTGTGTGTGTGGGTGTGGTG TGTGGGTGTG chrXII:11114-11397 - 5 5.71e-13 TGGGTGTGGG TGTGTGTGTGTGGGTGTGGTG TGTG chrXII:5546-5807 - 36 2.42e-12 TGTGGTGTGG GTGTGGTGTGTGGGTGTGGTG TATATATATG chrVI:4527-4866 - 40 3.89e-12 GTGTGTGGGT GTGGTGTGTGTGGGTGTGTGG GTATATATAT chrVII:479275-479956 + 68 1.53e-11 AACCAGCTTC GGTGTGTGTGTGTGTGTGAAG CTAAGAGTTG chrXIII:5402-5694 - 41 2.12e-11 GTGGGTGTGG GTGTGGTGTGTGGGTGTGGGT GTATATATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGTGKGTGTGGGTGTGGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXII:1064977-1065248 6.7e-15 70_[+3]_9 chrI:230074-230214 6.7e-15 66_[+3]_13 chrIV:51-207 6.7e-15 11_[-3]_68 chrVIII:556790-557103 6.7e-15 64_[+3]_15 chrXI:666580-666739 6.7e-15 26_[+3]_53 chrVIII:562347-562582 2.3e-14 65_[+3]_14 chrXII:11114-11397 5.7e-13 4_[-3]_75 chrXII:5546-5807 2.4e-12 35_[-3]_44 chrVI:4527-4866 3.9e-12 39_[-3]_40 chrVII:479275-479956 1.5e-11 67_[+3]_12 chrXIII:5402-5694 2.1e-11 40_[-3]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGTGKGTGTGGGTGTGGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTGTGKGTGTGGGTGTGGTG width=21 seqs=11 chrXII:1064977-1065248 ( 71) GGTGTGGGTGTGGGTGTGGTG 1 chrI:230074-230214 ( 67) GGTGTGGGTGTGGGTGTGGTG 1 chrIV:51-207 ( 12) GGTGTGGGTGTGGGTGTGGTG 1 chrVIII:556790-557103 ( 65) GGTGTGGGTGTGGGTGTGGTG 1 chrXI:666580-666739 ( 27) GGTGTGGGTGTGGGTGTGGTG 1 chrVIII:562347-562582 ( 66) GGTGTGTGTGTGGGTGTGGTG 1 chrXII:11114-11397 ( 5) TGTGTGTGTGTGGGTGTGGTG 1 chrXII:5546-5807 ( 36) GTGTGGTGTGTGGGTGTGGTG 1 chrVI:4527-4866 ( 40) GTGGTGTGTGTGGGTGTGTGG 1 chrVII:479275-479956 ( 68) GGTGTGTGTGTGTGTGTGAAG 1 chrXIII:5402-5694 ( 41) GTGTGGTGTGTGGGTGTGGGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGTGKGTGTGGGTGTGGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 47120 bayes= 12.4195 E= 4.9e-043 -1010 -1010 242 -186 -1010 -1010 210 -28 -1010 -1010 69 114 -1010 -1010 227 -86 -1010 -1010 10 131 -1010 -1010 256 -1010 -1010 -1010 142 72 -1010 -1010 256 -1010 -1010 -1010 -1010 160 -1010 -1010 256 -1010 -1010 -1010 -1010 160 -1010 -1010 256 -1010 -1010 -1010 242 -186 -1010 -1010 256 -1010 -1010 -1010 -1010 160 -1010 -1010 256 -1010 -1010 -1010 -1010 160 -1010 -1010 256 -1010 -186 -1010 227 -186 -186 -1010 10 114 -1010 -1010 242 -186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGTGKGTGTGGGTGTGGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 11 E= 4.9e-043 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.727273 0.272727 0.000000 0.000000 0.272727 0.727273 0.000000 0.000000 0.818182 0.181818 0.000000 0.000000 0.181818 0.818182 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.454545 0.545455 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.090909 0.000000 0.818182 0.090909 0.090909 0.000000 0.181818 0.727273 0.000000 0.000000 0.909091 0.090909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGTGKGTGTGGGTGTGGTG MEME-3 regular expression -------------------------------------------------------------------------------- G[GT][TG]GTG[TG]GTGTGGGTGTGGTG -------------------------------------------------------------------------------- Time 961.60 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXV:43247-43630 8.29e-01 100 chrIV:491554-491974 9.78e-01 100 chrVII:23786-24206 1.40e-02 23_[+1(3.48e-05)]_51 chrXII:232243-232476 7.51e-01 100 chrX:383294-383394 7.91e-01 100 chrIV:416778-417264 7.20e-01 100 chrXI:24862-25118 5.66e-01 100 chrIV:339354-339774 7.94e-01 100 chrXIII:25241-25470 7.98e-01 100 chrXIII:652070-652600 6.65e-02 100 chrII:255619-255905 8.66e-01 100 chrXII:817829-818249 3.91e-01 100 chrXII:568179-568453 7.41e-01 100 chrIV:980932-981236 6.13e-01 100 chrIV:475993-476413 8.53e-01 100 chrVIII:132903-133350 1.12e-05 9_[-1(1.60e-08)]_65 chrIX:138057-138168 7.00e-01 100 chrXIII:626440-626853 9.99e-01 100 chrX:651337-651437 2.95e-03 50_[-3(5.17e-06)]_29 chrVIII:85264-85507 6.54e-06 14_[-1(5.36e-09)]_60 chrIII:138950-139118 8.13e-01 100 chrX:204537-204637 1.60e-01 100 chrV:207199-207546 6.26e-11 30_[+1(1.53e-07)]_8_[+2(4.46e-11)]_\ 6 chrIV:560971-561391 4.80e-01 100 chrXII:713147-713567 9.58e-01 100 chrVII:914841-915194 8.60e-01 100 chrXIV:778667-779087 8.54e-01 100 chrIX:256668-257088 7.77e-01 100 chrXIII:550019-550200 9.09e-01 100 chrXI:350870-351290 4.30e-01 100 chrXII:857846-858266 9.92e-01 100 chrXI:517861-518091 3.53e-09 57_[+1(8.34e-12)]_17 chrIV:309636-309741 9.49e-01 100 chrXII:628204-628587 1.05e-04 33_[+1(1.16e-07)]_41 chrI:143100-143571 4.00e-01 100 chrXIII:552021-552441 9.43e-01 100 chrIII:168284-168520 8.72e-01 100 chrXV:466238-466658 9.86e-01 100 chrV:551300-551446 1.48e-04 13_[-1(4.77e-08)]_61 chrXIII:56394-56814 9.99e-01 100 chrXV:159387-159642 9.98e-01 100 chrXVI:412400-412820 5.63e-01 100 chrX:121860-121960 4.78e-01 100 chrV:141195-141340 9.89e-01 100 chrVII:703029-703164 7.45e-01 100 chrVII:919676-920096 5.21e-01 100 chrX:608872-608972 6.69e-01 100 chrX:519329-519429 3.44e-02 10_[+3(1.14e-05)]_69 chrXV:867836-868142 6.93e-01 100 chrXV:725396-725573 9.76e-01 100 chrXV:648505-648925 8.11e-01 100 chrVII:736284-736566 6.00e-01 100 chrXI:432008-432428 2.47e-01 100 chrXIV:157325-157745 7.13e-01 100 chrXV:254654-254931 9.34e-01 100 chrXVI:214894-215185 6.53e-01 100 chrII:592320-592740 8.14e-01 100 chrIV:221448-221688 1.00e+00 100 chrXII:932208-932361 4.01e-01 100 chrIX:231262-231531 8.82e-01 100 chrVII:555884-556304 3.51e-01 100 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chrVII:364964-365153 8.37e-01 100 chrXIV:290463-290883 3.38e-01 100 chrXV:900771-900920 1.00e+00 100 chrIII:124132-124552 8.78e-01 100 chrII:235761-235999 9.84e-01 100 chrXIII:426243-426348 4.77e-01 100 chrII:350662-350950 1.01e-03 66_[+1(4.62e-07)]_8 chrVI:64238-64658 8.43e-01 100 chrIV:1354647-1354779 9.99e-01 100 chrIII:166439-166859 9.73e-01 100 chrV:167362-167782 6.57e-01 100 chrIV:588905-589325 8.52e-01 100 chrXII:199287-199565 5.31e-01 100 chrIV:449605-449904 1.00e+00 100 chrX:390927-391027 1.77e-10 11_[-2(2.91e-11)]_9_[-1(6.80e-07)]_\ 24 chrVIII:386562-386831 9.88e-01 100 chrIV:308279-308699 5.60e-01 100 chrXV:159786-160206 4.92e-01 100 chrXIV:567950-568226 1.09e-07 72_[+1(4.27e-11)]_2 chrXV:469008-469428 2.01e-01 100 chrXIII:808166-808475 4.67e-04 25_[-1(8.71e-08)]_49 chrXVI:577168-577588 4.05e-01 100 chrVII:110488-110865 7.64e-11 10_[-2(4.46e-11)]_8_[-1(1.83e-07)]_\ 26 chrI:230074-230214 1.93e-15 42_[+3(6.41e-13)]_3_[+3(6.75e-15)]_\ 13 chrII:558000-558420 6.64e-01 100 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2.85e-01 100 chrIV:118510-118724 5.22e-01 100 chrXII:5546-5807 9.00e-14 35_[-3(2.42e-12)]_3_[-3(3.34e-13)]_\ 20 chrIV:470267-470687 3.16e-01 100 chrXI:42760-43180 5.78e-01 100 chrIV:439523-439943 1.47e-02 24_[-3(8.95e-05)]_55 chrVI:64119-64252 3.90e-01 100 chrVIII:116085-116356 8.59e-01 100 chrXII:88166-88453 6.17e-01 100 chrVII:328390-328840 8.58e-10 47_[+2(1.04e-12)]_23 chrXIII:651051-651471 5.32e-01 100 chrVIII:462069-462198 5.47e-01 100 chrIV:1233638-1234168 5.94e-01 100 chrIII:305770-306190 4.56e-02 100 chrVI:137307-137588 9.88e-01 100 chrIV:1150843-1151103 4.69e-01 100 chrXI:309348-309768 7.91e-01 100 chrV:431212-431550 1.01e-04 13_[-1(2.60e-07)]_61 chrV:449728-449914 7.67e-01 100 chrXIII:296929-297807 5.04e-01 100 chrVIII:388825-389160 7.17e-09 31_[-1(2.37e-11)]_43 chrVII:437229-437437 9.20e-01 100 chrXV:619173-619536 5.69e-01 100 chrXV:409633-410053 4.86e-01 100 chrXIV:585540-585960 9.85e-01 100 chrVII:346220-346407 3.48e-01 100 chrVII:661570-661882 1.23e-03 68_[+1(1.53e-07)]_6 chrVI:165589-166009 5.18e-01 100 chrXV:113771-114026 9.51e-01 100 chrXIII:887623-888043 7.61e-02 100 chrIII:305565-305985 5.26e-02 100 chrXV:1004577-1005035 9.30e-01 100 chrXIII:837746-838023 3.15e-01 100 chrVIII:385417-385837 4.09e-02 100 chrXV:159516-159936 3.07e-01 100 chrXII:806808-806930 9.85e-01 100 chrXVI:775672-775977 5.75e-12 2_[-2(1.62e-10)]_8_[-1(5.36e-09)]_\ 34 chrXV:710018-710192 4.52e-01 100 chrVII:479275-479956 9.49e-08 67_[+3(1.53e-11)]_12 chrXV:976246-976534 1.78e-01 100 chrXV:436503-436923 9.04e-01 100 chrIV:1490055-1490387 2.68e-01 100 chrVIII:555826-556246 4.55e-01 100 chrXII:152132-152552 4.52e-01 100 chrXV:778935-779355 9.94e-01 100 chrVII:577022-577442 5.30e-01 100 chrXV:1027953-1028239 8.80e-01 100 chrVIII:115482-115595 8.55e-01 100 chrXIV:461971-462195 9.76e-01 100 chrVIII:123694-124114 6.91e-01 100 chrVII:874603-875023 1.27e-01 100 chrVIII:114698-115118 8.10e-01 100 chrX:538406-538506 1.07e-01 100 chrVII:799947-800367 4.64e-01 100 chrII:802137-802557 9.55e-01 100 chrII:254923-255233 1.96e-01 100 chrXVI:785580-786000 2.73e-02 100 chrXV:87450-87842 6.48e-01 100 chrXIII:806517-806937 7.61e-01 100 chrVII:702385-702601 9.22e-01 100 chrX:378212-378312 4.86e-06 60_[+1(4.14e-09)]_14 chrIV:915922-916161 9.99e-01 100 chrXVI:407627-407732 9.69e-01 100 chrV:435696-435982 7.68e-07 13_[-1(1.38e-09)]_61 chrXI:109727-109880 9.71e-01 100 chrXI:302737-303032 1.92e-01 100 chrV:423466-423886 3.54e-01 100 chrII:165811-166231 1.35e-01 100 chrXIII:267831-268286 5.78e-01 100 chrIV:428425-428667 3.31e-01 100 chrVII:649107-649285 6.80e-01 100 chrIV:1450068-1450183 1.00e+00 100 chrXIII:572870-573131 8.13e-01 100 chrVII:883757-884075 9.86e-01 100 chrXIV:507349-507582 8.80e-01 100 chrXIII:168620-168888 9.95e-01 100 chrIV:946150-946570 4.09e-07 48_[+2(7.11e-10)]_22 chrXII:214903-215051 1.48e-05 6_[-1(4.71e-09)]_68 chrIV:1201582-1201977 1.62e-13 16_[+1(3.17e-09)]_9_[+2(4.48e-12)]_\ 19 chrX:139975-140075 3.07e-01 100 chrXVI:171668-172088 3.47e-01 100 chrXV:1003890-1004310 6.54e-01 100 chrXV:760650-761070 4.03e-01 100 chrV:141619-142039 1.32e-01 100 chrXI:453935-454355 9.59e-01 100 chrXV:447077-447497 9.57e-01 100 chrVII:930916-931203 6.42e-01 100 chrVII:601226-601356 3.78e-01 100 chrXIV:616415-616835 7.45e-01 100 chrXV:908149-908569 9.62e-01 100 chrVII:959367-959551 7.26e-01 100 chrXVI:280795-281094 9.53e-01 100 chrII:89364-89480 1.31e-01 100 chrXIV:499526-499692 9.91e-01 100 chrXII:366129-366428 9.27e-02 55_[-2(9.87e-05)]_15 chrXII:233087-233285 5.54e-02 100 chrIV:483844-484264 8.67e-01 100 chrVII:439170-439340 9.98e-01 100 chrX:516102-516202 5.92e-01 100 chrVII:364244-364349 9.29e-01 100 chrIV:1239824-1240021 8.89e-01 100 chrIII:10979-11399 4.39e-01 100 chrVI:4527-4866 9.98e-13 39_[-3(3.89e-12)]_2_[-3(5.28e-12)]_\ 17 chrXVI:929909-930329 4.56e-01 100 chrIV:456532-456952 6.13e-01 100 chrXII:441344-441472 9.16e-01 100 chrIV:512640-513060 9.61e-01 100 chrXII:368104-368830 2.12e-01 100 chrXIII:499739-500159 9.76e-01 100 chrIV:137335-137755 5.29e-01 100 chrXV:779932-780391 1.20e-02 28_[-3(7.16e-05)]_51 chrVII:876247-876490 1.24e-05 71_[+1(3.17e-09)]_3 chrXVI:654459-654593 4.12e-02 100 chrI:141611-141966 7.67e-01 100 chrXVI:875917-876337 8.83e-01 100 chrXIV:174357-174574 3.02e-01 100 chrVIII:361834-362254 3.90e-01 100 chrXIV:88915-89564 9.43e-01 100 chrXI:334114-334408 9.50e-01 100 chrV:102311-102449 4.03e-01 100 chrX:422799-422899 2.27e-03 69_[+1(6.30e-07)]_5 chrXVI:575268-575688 2.44e-01 100 chrIV:1360804-1361112 8.05e-01 100 chrIX:300133-300493 3.54e-05 15_[-1(3.17e-09)]_59 chrV:434520-434768 4.15e-01 100 chrIV:668029-668169 3.45e-05 9_[-1(3.63e-09)]_65 chrIII:114356-114604 1.00e+00 100 chrVIII:382428-382688 8.64e-01 100 chrVII:724506-724926 9.41e-01 100 chrV:235493-235708 9.96e-01 100 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************