Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.048371
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.060885
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.082666
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.017953
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.074305
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background
Finished invoke:
  name: bg  status: 0  time: 0.027091
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 921.844489
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 117.726529
Invoking:
  centrimo -seqlen 430 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.259483
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 0.449848
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background -primary TAMCMACTRSGCCAHRVRRSCW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 0.551877
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background -primary GRRTCGAACCSMKGAYCTYMNGRTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 0.525561
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background -primary DGRTGTAYGGRTGTD /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 0.410213
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background -primary CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.289482
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background -primary ACCACKA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.289473
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 0.263297
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background -primary TTTCTTB /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.381743
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.26313
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background -primary CACGGYG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.25055
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background -primary CTATCAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 0.236311
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background -primary CCACACSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.262104
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background -primary ATCKTGAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.244515
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background -primary AYTCTCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.275913
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background -primary CTGAGCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.202665
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/spamo_out_15 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background -primary CAWATATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo15  status: 0  time: 0.240211
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/spamo_out_16 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background -primary TCKCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml
Finished invoke:
  name: spamo16  status: 0  time: 0.249932
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background --motif TAMCMACTRSGCCAHRVRRSCW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.266387
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background --motif GRRTCGAACCSMKGAYCTYMNGRTT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.270944
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background --motif DGRTGTAYGGRTGTD /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.274843
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background --motif CGCSTTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.163828
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background --motif ACCACKA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.176177
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.173125
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background --motif TTTCTTB /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.168091
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.195332
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background --motif CACGGYG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.184782
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background --motif CTATCAC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.166029
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background --motif CCACACSC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.186502
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background --motif ATCKTGAG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.178234
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background --motif AYTCTCG /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.184524
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background --motif CTGAGCTA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.165564
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/fimo_out_15 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background --motif CAWATATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa
Finished invoke:
  name: fimo15  status: 0  time: 0.171343
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/fimo_out_16 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background --motif TCKCCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/BY4741--SWI1.fa
Finished invoke:
  name: fimo16  status: 0  time: 0.169183
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.202107
Done