******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:140368-140928 1.0000 100 chrVI:223901-224195 1.0000 100 chrXII:749794-750224 1.0000 100 chrXVI:775619-776076 1.0000 100 chrXIV:89259-89517 1.0000 100 chrIV:117060-117645 1.0000 100 chrVII:561393-561999 1.0000 100 chrI:141855-142285 1.0000 100 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chrVII:365095-365307 1.0000 100 chrVIII:62532-62975 1.0000 100 chrXI:140753-141373 1.0000 100 chrVI:221728-222096 1.0000 100 chrIV:555223-555653 1.0000 100 chrIV:306553-306983 1.0000 100 chrVIII:358349-358826 1.0000 100 chrV:265593-266023 1.0000 100 chrXIII:379146-379612 1.0000 100 chrXVI:586582-587012 1.0000 100 chrXVI:731902-732381 1.0000 100 chrX:374220-374320 1.0000 100 chrXVI:559995-560559 1.0000 100 chrVIII:562272-562615 1.0000 100 chrXII:810953-811383 1.0000 100 chrXII:282490-282888 1.0000 100 chrVII:397971-398102 1.0000 100 chrV:270354-270717 1.0000 100 chrI:180934-181469 1.0000 100 chrV:130959-131396 1.0000 100 chrXIII:754404-754834 1.0000 100 chrXIII:499843-500105 1.0000 100 chrXIII:480439-480892 1.0000 100 chrXIII:222707-222974 1.0000 100 chrIV:444065-444495 1.0000 100 chrXV:866553-866974 1.0000 100 chrIX:336171-336711 1.0000 100 chrXII:498433-498993 1.0000 100 chrX:233713-233813 1.0000 100 chrXII:856861-857023 1.0000 100 chrVIII:292405-292835 1.0000 100 chrI:143127-143539 1.0000 100 chrX:119251-119351 1.0000 100 chrX:74590-74690 1.0000 100 chrXIII:372300-372770 1.0000 100 chrV:61073-61541 1.0000 100 chrXIII:286437-286867 1.0000 100 chrVI:210456-210908 1.0000 100 chrVII:483294-483749 1.0000 100 chrXVI:209995-210529 1.0000 100 chrIX:131813-132036 1.0000 100 chrXIV:505450-505880 1.0000 100 chrIV:358113-358436 1.0000 100 chrXVI:699913-700446 1.0000 100 chrIV:488500-489082 1.0000 100 chrXV:624305-624477 1.0000 100 chrXIII:91769-92081 1.0000 100 chrXIII:122959-123389 1.0000 100 chrIV:356714-356936 1.0000 100 chrXVI:184886-185316 1.0000 100 chrXII:962832-963336 1.0000 100 chrII:9295-9790 1.0000 100 chrVII:883752-884030 1.0000 100 chrXI:99714-99952 1.0000 100 chrXIV:330777-331121 1.0000 100 chrVII:784724-785154 1.0000 100 chrIV:1525334-1525661 1.0000 100 chrXVI:431247-431677 1.0000 100 chrIV:667769-668291 1.0000 100 chrXVI:302611-303016 1.0000 100 chrXII:5399-5905 1.0000 100 chrXI:382196-382456 1.0000 100 chrXI:326731-327161 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background -dna -revcomp -nostatus model: mod= zoops nmotifs= 3 evt= inf object function= E-value of product of p-values width: minw= 6 maxw= 30 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 580 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 58000 N= 580 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.310 C 0.190 G 0.190 T 0.310 Background letter frequencies (from /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--SWI1/background): A 0.320 C 0.180 G 0.180 T 0.320 ******************************************************************************** ******************************************************************************** MOTIF TAMCMACTRSGCCAHRVRRSCW MEME-1 width = 22 sites = 118 llr = 1689 E-value = 2.0e-281 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAMCMACTRSGCCAHRVRRSCW MEME-1 Description -------------------------------------------------------------------------------- Simplified A 364:39::423::a33344113 pos.-specific C 1:5a5:8:13:a8:4222249: probability G :11:2:::447::::43434:2 matrix T 63::::2a1:::2:212111:5 bits 2.5 * * 2.2 * * 2.0 * * 1.7 * * * Relative 1.5 * ** **** * Entropy 1.2 * *** **** * (20.7 bits) 1.0 * *** **** * 0.7 ** *** ***** ** 0.5 * ****** ****** * ** 0.2 **************** ***** 0.0 ---------------------- Multilevel TACCCACTGGGCCACGAGACCT consensus ATA A T ACA AAGAGG A sequence G A TCC C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAMCMACTRSGCCAHRVRRSCW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chrXI:219663-220124 - 51 1.38e-10 GGGAGCGCGC TACCGACTACGCCACACGCCCT ATTTACTGTT chrVII:738880-739334 - 64 1.38e-10 ACGGTGCCTT AACCAACTGGGCCAAGAGACCT ATTTTTTTCG chrV:551112-551613 + 26 1.38e-10 ACGGTGCCTT AACCAACTGGGCCAAGAGACCT GTAATCTGTG chrIX:183237-183732 + 59 2.57e-10 ACGGTGCCTT AACCAACTGGGCCAAGAGACCA GGAATTTGTT chrXII:1051894-1052363 + 46 2.57e-10 ACGGTGCCTT AACCAACTGGGCCAAGAGACCA TGAAAAGGAC chrIX:210471-210917 - 20 2.57e-10 ACGGTGCCTT AACCAACTGGGCCAAGAGACCA GATATTTCAT chrXIV:602152-602502 - 34 2.57e-10 ACGGTGCCTT AACCAACTGGGCCAAGAGACCA TTGTTATCTG chrXIV:569771-570092 + 39 2.57e-10 ACGGTGCCTT AACCAACTGGGCCAAGAGACCA CTGTTATCTG chrXVI:819291-819774 - 46 2.57e-10 ACGGTGCCTT AACCAACTGGGCCAAGAGACCA TTCTATTGTT chrXII:656766-657195 + 56 2.57e-10 GGGAGCGCGC TACCGACTACGCCACACGCCCA ATTTTCTTGT chrXIII:320967-321409 + 61 3.78e-10 GGGAGCGCGC TACCGACTACGCCACACGCCCG ATTTGTATTG chrVI:204775-205196 + 41 3.78e-10 GGGAGCGCGC TACCGACTACGCCACACGCCCG AACGTTTGTT chrXV:854001-854455 + 61 5.53e-10 GGAAGCGCGC TACCAACTGCGCCATGTGCCCT GATGACTGTT chrV:311870-312365 + 8 9.47e-10 AGCGCGC TACCAACTGCGCCATGTGCCCA GAATTTCTGT chrI:165963-166629 - 20 9.47e-10 GGAAGCGCGC TACCAACTGCGCCATGTGCCCA ACTCATTACA chrV:438446-438940 - 56 2.99e-09 CAGATGCCAT AACCGACTAGACCACGAAACCT AATTTGTTGA chrXII:687647-688186 + 46 2.99e-09 CAGATGCCAT AACCGACTAGACCACGAAACCT ATTATTTATG chrX:378144-378244 - 51 2.99e-09 CAGATGCCAT AACCGACTAGACCACGAAACCT ATTAATTTAT chrXIII:420436-420908 + 19 2.99e-09 CAGATGCCAT AACCGACTAGACCACGAAACCT GTTATTTGTG chrII:642877-643261 + 39 4.05e-09 ATCTGCTGCG CTACCACTGCGCCATACGAGCT TTCTATTACA chrVII:706932-707408 + 39 4.05e-09 ATCTGCTGCG CTACCACTGCGCCATACGAGCT TGATTTTCTG chrXVI:435649-436250 + 45 4.05e-09 ATCTGCTGCG CTACCACTGCGCCATACGAGCT TTTGTTGTAT chrXVI:775619-776076 + 19 4.05e-09 ATCTGCTGCG CTACCACTGCGCCATACGAGCT TTTGAATTAT chrXIII:372300-372770 + 13 4.71e-09 CAGATGCCAT AACCGACTAGACCACGAAACCA GGTTTTATTG chrVII:73675-74137 + 26 4.71e-09 CAGATGCCAT AACCGACTAGACCACGAAACCA CTTAATTGAA chrV:469223-469674 - 58 4.71e-09 CAGATGCCAT AACCGACTAGACCACGAAACCA ATTATTTCTT chrXI:308001-308460 + 17 4.71e-09 CAGATGCCAT AACCGACTAGACCACGAAACCA CTTAATTGTT chrVIII:85188-85583 + 16 4.71e-09 CAGATGCCAT AACCGACTAGACCACGAAACCA AATTCTTATT chrVII:412108-412639 + 24 4.71e-09 CAGATGCCAT AACCGACTAGACCACGAAACCA GTTTTTTGAT chrXV:663556-664142 + 66 4.71e-09 CAGATGCCAT AACCGACTAGACCACGAAACCA CTATTTGTTG chrXIII:480439-480892 + 58 5.45e-09 TCATACGCGC TACCGATTGCGCCAACAAGGCT ACTTATTGTT chrIV:1201499-1202014 - 43 5.45e-09 TCATACGCGC TACCGATTGCGCCAACAAGGCT ATTTATTTGT chrVII:185596-185976 + 30 5.45e-09 TCATACGCGC TACCGATTGCGCCAACAAGGCT ATTTCGTTGA chrV:135154-135779 + 61 5.45e-09 TCATACGCGC TACCGATTGCGCCAACAAGGCT TTTTTCTTGG chrXVI:581823-582372 - 14 5.45e-09 TCATACGCGC TACCGATTGCGCCAACAAGGCT CTTTTGTTGA chrVII:122043-122460 - 67 5.45e-09 TCATACGCGC TACCGATTGCGCCAACAAGGCT AATTCGTTGG chrXI:202782-203179 - 68 5.45e-09 TCATACGCGC TACCGATTGCGCCAACAAGGCT TTTAAACGTG chrVII:876156-876704 - 13 5.45e-09 TCATACGCGC TACCGATTGCGCCAACAAGGCT ATTCTATTAT chrIV:884122-884622 - 38 7.26e-09 CACGAAGCTC TAACCACTGAGCTACACGAGCA TTTTCGAAAG chrVI:226522-226963 + 48 8.36e-09 TCATACGCGC TACCGATTGCGCCAACAAGGCA TTTTAATCTC chrXIII:747730-748225 + 16 9.59e-09 GTCAGACGCG TTGCCATTACGCCACGCGAGCT AGTCATATGT chrVII:828496-829046 + 53 9.59e-09 GTCAGACGCG TTGCCATTACGCCACGCGAGCT ACTGTTTGTT chrII:405601-406213 - 20 9.59e-09 GTCAGACGCG TTGCCATTACGCCACGCGAGCT ACTATTTGTT chrXIII:131575-132136 + 71 9.59e-09 GTCAGACGCG TTGCCATTACGCCACGCGAGCT AAATTTCT chrIV:1150617-1151201 + 62 9.59e-09 GGCATCGCCT TAACCACTCGGCCACTGGGACT GAAACACTTT chrIV:437484-438012 - 73 1.10e-08 TCGCCT TAACCACTCGGCCAAGTTGCCT TACTAATGAT chrII:226830-227402 - 8 1.10e-08 TCTTTCGCCT TAACCACTCGGCCAAGTTGCCT CGTTTTA chrIV:1305413-1305884 - 31 1.10e-08 TCTTTCGCCT TAACCACTCGGCCAAGTTGCCT TAATTTGTAT chrVI:191319-191843 + 62 1.44e-08 GGCATCGCCT TAACCACTCGGCCACTGGGACA GAATCTCTTG chrV:138385-138940 - 53 1.44e-08 GTCAGACGCG TTGCCATTACGCCACGCGAGCA TTATTTATTG chrI:138923-139411 - 34 1.44e-08 AGCGAGAATC ATACCACTAGACCACACGCCCG TACTAATTGA chrV:138385-138944 - 51 1.44e-08 GTCAGACGCG TTGCCATTACGCCACGCGAGCA TTATTTATTG chrXIV:546899-547379 - 4 1.44e-08 AGCGAGAATC ATACCACTAGACCACACGCCCG ATT chrVI:101147-101641 - 31 1.44e-08 AGCGAGAATC ATACCACTAGACCACACGCCCG AATTATTGTT chrIX:174790-175322 - 24 1.64e-08 TGTGGCGCCT TACCAACTTGGCCATAGAAGCT CGTACTTGTT chrXII:167752-168246 + 56 1.64e-08 TCTTTCGCCT TAACCACTCGGCCAAGTTGCCA TATGACTATT chrVIII:115950-116398 + 35 1.64e-08 TGTGGCGCCT TACCAACTTGGCCATAGAAGCT CTAATAGTGA chrXV:113531-114044 - 64 1.64e-08 TGTGGCGCCT TACCAACTTGGCCATAGAAGCT AAATCTCTGA chrIX:325507-326038 - 25 1.64e-08 TGTGGCGCCT TACCAACTTGGCCATAGAAGCT CGTATTTTAC chrXIII:258998-259498 + 21 1.64e-08 TCTTTCGCCT TAACCACTCGGCCAAGTTGCCA TACTAACTTG chrXII:784120-784552 - 67 1.87e-08 GGCATCGCCT TAACCACTCGGCCACTGGGACG GTTGAACAAC chrXV:353856-354312 + 59 2.41e-08 TGTGGCGCCT TACCAACTTGGCCATAGAAGCA GTAAACCGTT chrXIV:96052-96548 + 42 4.43e-08 GGTGGGATGA TAACCACTACACTAACCGCCCA TGTGTTGGAT chrXIII:808047-808596 + 26 4.98e-08 CCGAAAGTGA TAACCACTACACTATAGGACCT TTTTCTTCTG chrVII:779333-779857 - 70 5.59e-08 GTGGGATGA TAACCACTACACTAACCGCCCG GGGTTAACTT chrXV:594160-594705 + 23 5.59e-08 GCATAAATTC TAACCACTGAACCACTTGCGCG TTTCAATCAA chrV:250091-250563 - 8 7.02e-08 CCGAAAGTGA TAACCACTACACTATAGGACCA GTACAAC chrIV:802547-803051 + 33 8.77e-08 CCGAAAGTGA TAACCACTACACTATAGGACCG ACAATTCATG chrXV:228048-228572 - 70 9.79e-08 GCACGCCTT AACCAACTTGGCCATGGAGTCT AATATTTTAT chrVII:730918-731416 - 19 9.79e-08 CGCACGCCTT AACCAACTTGGCCATGGAGTCT TTTTGACTAT chrXVI:744062-744572 - 16 9.79e-08 GTGCAACGCT CTACCACTAAGCTAAGGAGGCT TTTACACTGT chrXVI:689297-689827 - 52 9.79e-08 TCTGTCGCCT TAACCACTCGGCCATAGTGCCC AAAATAATCT chrXIV:102419-103020 - 46 9.79e-08 CGCACGCCTT AACCAACTTGGCCATGGAGTCT TATAATATAT chrXIV:560467-561042 + 41 1.09e-07 TGTGGCGCCT TACCAACTTGGCCATAGAAGCC CGTTATTACG chrVI:161964-162446 - 72 1.35e-07 TTGGATT TTACCACTAAACCACTTGCGCT TGTTTTCTTG chrXIV:632366-632848 - 41 1.35e-07 CGCACGCCTT AACCAACTTGGCCATGGAGTCA CTTTAAATTC chrX:531577-531677 - 21 1.35e-07 ACGTTGGATT TTACCACTAAACCACTTGCGCT CACTAATTGT chrVI:137248-137838 + 46 1.35e-07 CGCACGCCTT AACCAACTTGGCCATGGAGTCA GTCACTTTTG chrV:130959-131396 + 6 1.50e-07 AGTGA TAACCACTACACTATAAAACCT CTTAATTATT chrII:347353-347891 - 30 2.26e-07 CTGCCGCCTT AGACCACTCGGCCAACCCTCCG TATAAATGAA chrXVI:571975-572544 - 59 2.26e-07 ACGTTGGATT TTACCACTAAACCACTTGCGCG AAGTATTGTG chrIV:519485-520011 - 44 2.26e-07 CTGCCGCCTT AGACCACTCGGCCAACCCTCCG TAAAATCACT chrXV:281897-282412 - 59 2.26e-07 ACGTTGGATT TTACCACTAAACCACTTGCGCG CTTTCATGTT chrXIII:183722-184170 + 52 2.26e-07 ACGTTGGATT TTACCACTAAACCACTTGCGCG ATCTTTATTG chrIII:123429-123840 + 44 2.49e-07 AGCGAGAATC ATACCTCTAGACCACACGCCCT CCTTTGAAAA chrV:492149-492614 + 73 2.75e-07 CCAGACGCCG TGACCATTGGGCCACGAGGAAT AGGATG chrV:117848-118372 + 26 3.68e-07 CACCACAGCG TACCATGTGCGCCACGAGGCCT CAAACGTAAA chrVII:422884-423357 - 21 4.44e-07 CAGGCGCCTT AGACCGCTCGGCCAAACAACCA CTTATCTGTT chrVII:857277-857678 + 44 4.44e-07 CAGGCGCCTT AGACCGCTCGGCCAAACAACCA CTTATTTGTT chrXII:628159-628670 - 18 4.44e-07 CAGGCGCCTT AGACCGCTCGGCCAAACAACCA CTTATTTGTT chrIV:359313-359867 - 36 5.35e-07 CCGAACGCTC TACCAACTGAGCTAACAAGGAT GAGTTCTTCG chrVII:115263-115767 - 22 5.35e-07 CCGAACGCTC TACCAACTGAGCTAACAAGGAT GAGTTCTTCG chrXIV:374677-375088 - 36 5.86e-07 TCTGGCGCTC TCCCAACTGAGCTAAGTCCGCT TATTTTTCTG chrX:538293-538393 - 65 5.86e-07 GGGAGACGCG TTACCATTACGCCAACGGAACC AACTTGGTTG chrV:99906-100406 - 26 6.41e-07 GCCCTGCGCG CTTCCACTGCGCCACGGCGCTT AGCCAACTTG chrX:517639-517739 + 36 6.41e-07 GCCCTGCGCG CTTCCACTGCGCCACGGCGCTT AACTTTTATG chrXIII:572701-573224 + 23 9.12e-07 ACTGACGCTC TTCCTACTGAGCTACTGAAGCT GTCTGTTATG chrXV:709931-710425 - 72 9.94e-07 CTGCGCG CTTCCACTGCGCCACGGCGCTG CTAATTCTTG chrX:233713-233813 - 37 1.18e-06 CCAGACGCCG TGACCATTGGGCCACGAGGAAC AAGAATATAA chrIV:619756-620287 + 50 1.18e-06 CCAGACGCCG TGACCATTGGGCCACGAGGAAC AAGATTTCTT chrX:422685-422785 - 17 1.18e-06 ACTGACGCTC TTCCTACTGAGCTACTGAAGCA TACAAAGGAT chrXVI:559995-560559 + 42 1.28e-06 TCTGGCGCTC TCCCAACTGAGCTAAATCCGCT CAATTTCTAT chrVIII:358349-358826 + 12 1.28e-06 TCTGGCGCTC TCCCAACTGAGCTAAATCCGCT TACTATTTGT chrVI:157730-158233 + 56 1.28e-06 TCTGGCGCTC TCCCAACTGAGCTAAATCCGCT TCTATTTATG chrXV:976133-976754 - 27 1.39e-06 ACTGACGCTC TTCCTACTGAGCTACTGAAGCG CACAAAATAT chrXIII:379146-379612 + 59 2.84e-06 GTCGAAAGCT CTACCATTGAGCCACCGCTTCA ACTTTTATTG chrVIII:62532-62975 - 51 2.84e-06 CGATGTGTAC TAACCACTATACTAAGATGGCA TATGATTTTA chrVII:287222-287699 + 25 2.84e-06 GTCGAAAGCT CTACCATTGAGCCACCGCTTCA TCTTGAAATA chrXVI:55898-56611 + 50 2.84e-06 GTCGAAAGCT CTACCATTGAGCCACCGCTTCA ACTATTGTTG chrXI:302618-303212 - 52 2.84e-06 GTCGAAAGCT CTACCATTGAGCCACCGCTTCA TCTTGGAATA chrVIII:475585-475961 + 35 1.78e-05 GGCAACGTGA TAGCCGCTACACTATTGGAACA GACTTTTAAT chrX:541246-541346 - 61 1.78e-05 GCGCCCATTC TGACCATTAAACTATCACGGAT TTTCTTTCTG chrIX:324094-324574 + 70 2.13e-05 GCGCCCATTC TGACCATTAAACTATCACGGAA TATTAGATG chrXI:513187-513658 + 11 2.13e-05 GCGCCCATTC TGACCATTAAACTATCACGGAA CGTTATTTGT chrXVI:520173-520546 + 53 6.03e-05 TGCCTGAGTG TTCCACCCAGGCCTCGCCGGAG GAAAATGCCA chrXV:83179-83515 - 21 8.11e-05 CAAATGGACT CATCATCTACGATACGGCCCCT TTAATCCGCA chrXV:866553-866974 - 36 7.40e-04 AAAACCGGTG TAACACCCATACAAACCCAGAA TGCTTGGATG chrXIII:225332-225765 + 32 1.17e-03 TTTTCCGGTT TAACATCCGTGCATTACATCCG TACATTCTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAMCMACTRSGCCAHRVRRSCW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrXI:219663-220124 1.4e-10 50_[-1]_28 chrVII:738880-739334 1.4e-10 63_[-1]_15 chrV:551112-551613 1.4e-10 25_[+1]_53 chrIX:183237-183732 2.6e-10 58_[+1]_20 chrXII:1051894-1052363 2.6e-10 45_[+1]_33 chrIX:210471-210917 2.6e-10 19_[-1]_59 chrXIV:602152-602502 2.6e-10 33_[-1]_45 chrXIV:569771-570092 2.6e-10 38_[+1]_40 chrXVI:819291-819774 2.6e-10 45_[-1]_33 chrXII:656766-657195 2.6e-10 55_[+1]_23 chrXIII:320967-321409 3.8e-10 60_[+1]_18 chrVI:204775-205196 3.8e-10 40_[+1]_38 chrXV:854001-854455 5.5e-10 60_[+1]_18 chrV:311870-312365 9.5e-10 7_[+1]_71 chrI:165963-166629 9.5e-10 19_[-1]_59 chrV:438446-438940 3e-09 55_[-1]_23 chrXII:687647-688186 3e-09 45_[+1]_33 chrX:378144-378244 3e-09 50_[-1]_28 chrXIII:420436-420908 3e-09 18_[+1]_60 chrII:642877-643261 4e-09 38_[+1]_40 chrVII:706932-707408 4e-09 38_[+1]_40 chrXVI:435649-436250 4e-09 44_[+1]_34 chrXVI:775619-776076 4e-09 18_[+1]_60 chrXIII:372300-372770 4.7e-09 12_[+1]_66 chrVII:73675-74137 4.7e-09 25_[+1]_53 chrV:469223-469674 4.7e-09 57_[-1]_21 chrXI:308001-308460 4.7e-09 16_[+1]_62 chrVIII:85188-85583 4.7e-09 15_[+1]_63 chrVII:412108-412639 4.7e-09 23_[+1]_55 chrXV:663556-664142 4.7e-09 65_[+1]_13 chrXIII:480439-480892 5.4e-09 57_[+1]_21 chrIV:1201499-1202014 5.4e-09 42_[-1]_36 chrVII:185596-185976 5.4e-09 29_[+1]_49 chrV:135154-135779 5.4e-09 60_[+1]_18 chrXVI:581823-582372 5.4e-09 13_[-1]_65 chrVII:122043-122460 5.4e-09 66_[-1]_12 chrXI:202782-203179 5.4e-09 67_[-1]_11 chrVII:876156-876704 5.4e-09 12_[-1]_66 chrIV:884122-884622 7.3e-09 37_[-1]_41 chrVI:226522-226963 8.4e-09 47_[+1]_31 chrXIII:747730-748225 9.6e-09 15_[+1]_63 chrVII:828496-829046 9.6e-09 52_[+1]_26 chrII:405601-406213 9.6e-09 19_[-1]_59 chrXIII:131575-132136 9.6e-09 70_[+1]_8 chrIV:1150617-1151201 9.6e-09 61_[+1]_17 chrIV:437484-438012 1.1e-08 72_[-1]_6 chrII:226830-227402 1.1e-08 7_[-1]_71 chrIV:1305413-1305884 1.1e-08 30_[-1]_48 chrVI:191319-191843 1.4e-08 61_[+1]_17 chrV:138385-138940 1.4e-08 52_[-1]_26 chrI:138923-139411 1.4e-08 33_[-1]_45 chrV:138385-138944 1.4e-08 50_[-1]_28 chrXIV:546899-547379 1.4e-08 3_[-1]_75 chrVI:101147-101641 1.4e-08 30_[-1]_48 chrIX:174790-175322 1.6e-08 23_[-1]_55 chrXII:167752-168246 1.6e-08 55_[+1]_23 chrVIII:115950-116398 1.6e-08 34_[+1]_44 chrXV:113531-114044 1.6e-08 63_[-1]_15 chrIX:325507-326038 1.6e-08 24_[-1]_54 chrXIII:258998-259498 1.6e-08 20_[+1]_58 chrXII:784120-784552 1.9e-08 66_[-1]_12 chrXV:353856-354312 2.4e-08 58_[+1]_20 chrXIV:96052-96548 4.4e-08 41_[+1]_37 chrXIII:808047-808596 5e-08 25_[+1]_53 chrVII:779333-779857 5.6e-08 69_[-1]_9 chrXV:594160-594705 5.6e-08 22_[+1]_56 chrV:250091-250563 7e-08 7_[-1]_71 chrIV:802547-803051 8.8e-08 32_[+1]_46 chrXV:228048-228572 9.8e-08 69_[-1]_9 chrVII:730918-731416 9.8e-08 18_[-1]_60 chrXVI:744062-744572 9.8e-08 15_[-1]_63 chrXVI:689297-689827 9.8e-08 51_[-1]_27 chrXIV:102419-103020 9.8e-08 45_[-1]_33 chrXIV:560467-561042 1.1e-07 40_[+1]_38 chrVI:161964-162446 1.4e-07 71_[-1]_7 chrXIV:632366-632848 1.4e-07 40_[-1]_38 chrX:531577-531677 1.4e-07 20_[-1]_58 chrVI:137248-137838 1.4e-07 45_[+1]_33 chrV:130959-131396 1.5e-07 5_[+1]_73 chrII:347353-347891 2.3e-07 29_[-1]_49 chrXVI:571975-572544 2.3e-07 58_[-1]_20 chrIV:519485-520011 2.3e-07 43_[-1]_35 chrXV:281897-282412 2.3e-07 58_[-1]_20 chrXIII:183722-184170 2.3e-07 51_[+1]_27 chrIII:123429-123840 2.5e-07 43_[+1]_35 chrV:492149-492614 2.8e-07 72_[+1]_6 chrV:117848-118372 3.7e-07 25_[+1]_53 chrVII:422884-423357 4.4e-07 20_[-1]_58 chrVII:857277-857678 4.4e-07 43_[+1]_35 chrXII:628159-628670 4.4e-07 17_[-1]_61 chrIV:359313-359867 5.3e-07 35_[-1]_43 chrVII:115263-115767 5.3e-07 21_[-1]_57 chrXIV:374677-375088 5.9e-07 35_[-1]_43 chrX:538293-538393 5.9e-07 64_[-1]_14 chrV:99906-100406 6.4e-07 25_[-1]_53 chrX:517639-517739 6.4e-07 35_[+1]_43 chrXIII:572701-573224 9.1e-07 22_[+1]_56 chrXV:709931-710425 9.9e-07 71_[-1]_7 chrX:233713-233813 1.2e-06 36_[-1]_42 chrIV:619756-620287 1.2e-06 49_[+1]_29 chrX:422685-422785 1.2e-06 16_[-1]_62 chrXVI:559995-560559 1.3e-06 41_[+1]_37 chrVIII:358349-358826 1.3e-06 11_[+1]_67 chrVI:157730-158233 1.3e-06 55_[+1]_23 chrXV:976133-976754 1.4e-06 26_[-1]_52 chrXIII:379146-379612 2.8e-06 58_[+1]_20 chrVIII:62532-62975 2.8e-06 50_[-1]_28 chrVII:287222-287699 2.8e-06 24_[+1]_54 chrXVI:55898-56611 2.8e-06 49_[+1]_29 chrXI:302618-303212 2.8e-06 51_[-1]_27 chrVIII:475585-475961 1.8e-05 34_[+1]_44 chrX:541246-541346 1.8e-05 60_[-1]_18 chrIX:324094-324574 2.1e-05 69_[+1]_9 chrXI:513187-513658 2.1e-05 10_[+1]_68 chrXVI:520173-520546 6e-05 52_[+1]_26 chrXV:83179-83515 8.1e-05 20_[-1]_58 chrXV:866553-866974 0.00074 35_[-1]_43 chrXIII:225332-225765 0.0012 31_[+1]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAMCMACTRSGCCAHRVRRSCW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAMCMACTRSGCCAHRVRRSCW width=22 seqs=118 chrXI:219663-220124 ( 51) TACCGACTACGCCACACGCCCT 1 chrVII:738880-739334 ( 64) AACCAACTGGGCCAAGAGACCT 1 chrV:551112-551613 ( 26) AACCAACTGGGCCAAGAGACCT 1 chrIX:183237-183732 ( 59) AACCAACTGGGCCAAGAGACCA 1 chrXII:1051894-1052363 ( 46) AACCAACTGGGCCAAGAGACCA 1 chrIX:210471-210917 ( 20) AACCAACTGGGCCAAGAGACCA 1 chrXIV:602152-602502 ( 34) AACCAACTGGGCCAAGAGACCA 1 chrXIV:569771-570092 ( 39) AACCAACTGGGCCAAGAGACCA 1 chrXVI:819291-819774 ( 46) AACCAACTGGGCCAAGAGACCA 1 chrXII:656766-657195 ( 56) TACCGACTACGCCACACGCCCA 1 chrXIII:320967-321409 ( 61) TACCGACTACGCCACACGCCCG 1 chrVI:204775-205196 ( 41) TACCGACTACGCCACACGCCCG 1 chrXV:854001-854455 ( 61) TACCAACTGCGCCATGTGCCCT 1 chrV:311870-312365 ( 8) TACCAACTGCGCCATGTGCCCA 1 chrI:165963-166629 ( 20) TACCAACTGCGCCATGTGCCCA 1 chrV:438446-438940 ( 56) AACCGACTAGACCACGAAACCT 1 chrXII:687647-688186 ( 46) AACCGACTAGACCACGAAACCT 1 chrX:378144-378244 ( 51) AACCGACTAGACCACGAAACCT 1 chrXIII:420436-420908 ( 19) AACCGACTAGACCACGAAACCT 1 chrII:642877-643261 ( 39) CTACCACTGCGCCATACGAGCT 1 chrVII:706932-707408 ( 39) CTACCACTGCGCCATACGAGCT 1 chrXVI:435649-436250 ( 45) CTACCACTGCGCCATACGAGCT 1 chrXVI:775619-776076 ( 19) CTACCACTGCGCCATACGAGCT 1 chrXIII:372300-372770 ( 13) AACCGACTAGACCACGAAACCA 1 chrVII:73675-74137 ( 26) AACCGACTAGACCACGAAACCA 1 chrV:469223-469674 ( 58) AACCGACTAGACCACGAAACCA 1 chrXI:308001-308460 ( 17) AACCGACTAGACCACGAAACCA 1 chrVIII:85188-85583 ( 16) AACCGACTAGACCACGAAACCA 1 chrVII:412108-412639 ( 24) AACCGACTAGACCACGAAACCA 1 chrXV:663556-664142 ( 66) AACCGACTAGACCACGAAACCA 1 chrXIII:480439-480892 ( 58) TACCGATTGCGCCAACAAGGCT 1 chrIV:1201499-1202014 ( 43) TACCGATTGCGCCAACAAGGCT 1 chrVII:185596-185976 ( 30) TACCGATTGCGCCAACAAGGCT 1 chrV:135154-135779 ( 61) TACCGATTGCGCCAACAAGGCT 1 chrXVI:581823-582372 ( 14) TACCGATTGCGCCAACAAGGCT 1 chrVII:122043-122460 ( 67) TACCGATTGCGCCAACAAGGCT 1 chrXI:202782-203179 ( 68) TACCGATTGCGCCAACAAGGCT 1 chrVII:876156-876704 ( 13) TACCGATTGCGCCAACAAGGCT 1 chrIV:884122-884622 ( 38) TAACCACTGAGCTACACGAGCA 1 chrVI:226522-226963 ( 48) TACCGATTGCGCCAACAAGGCA 1 chrXIII:747730-748225 ( 16) TTGCCATTACGCCACGCGAGCT 1 chrVII:828496-829046 ( 53) TTGCCATTACGCCACGCGAGCT 1 chrII:405601-406213 ( 20) TTGCCATTACGCCACGCGAGCT 1 chrXIII:131575-132136 ( 71) TTGCCATTACGCCACGCGAGCT 1 chrIV:1150617-1151201 ( 62) TAACCACTCGGCCACTGGGACT 1 chrIV:437484-438012 ( 73) TAACCACTCGGCCAAGTTGCCT 1 chrII:226830-227402 ( 8) TAACCACTCGGCCAAGTTGCCT 1 chrIV:1305413-1305884 ( 31) TAACCACTCGGCCAAGTTGCCT 1 chrVI:191319-191843 ( 62) TAACCACTCGGCCACTGGGACA 1 chrV:138385-138940 ( 53) TTGCCATTACGCCACGCGAGCA 1 chrI:138923-139411 ( 34) ATACCACTAGACCACACGCCCG 1 chrV:138385-138944 ( 51) TTGCCATTACGCCACGCGAGCA 1 chrXIV:546899-547379 ( 4) ATACCACTAGACCACACGCCCG 1 chrVI:101147-101641 ( 31) ATACCACTAGACCACACGCCCG 1 chrIX:174790-175322 ( 24) TACCAACTTGGCCATAGAAGCT 1 chrXII:167752-168246 ( 56) TAACCACTCGGCCAAGTTGCCA 1 chrVIII:115950-116398 ( 35) TACCAACTTGGCCATAGAAGCT 1 chrXV:113531-114044 ( 64) TACCAACTTGGCCATAGAAGCT 1 chrIX:325507-326038 ( 25) TACCAACTTGGCCATAGAAGCT 1 chrXIII:258998-259498 ( 21) TAACCACTCGGCCAAGTTGCCA 1 chrXII:784120-784552 ( 67) TAACCACTCGGCCACTGGGACG 1 chrXV:353856-354312 ( 59) TACCAACTTGGCCATAGAAGCA 1 chrXIV:96052-96548 ( 42) TAACCACTACACTAACCGCCCA 1 chrXIII:808047-808596 ( 26) TAACCACTACACTATAGGACCT 1 chrVII:779333-779857 ( 70) TAACCACTACACTAACCGCCCG 1 chrXV:594160-594705 ( 23) TAACCACTGAACCACTTGCGCG 1 chrV:250091-250563 ( 8) TAACCACTACACTATAGGACCA 1 chrIV:802547-803051 ( 33) TAACCACTACACTATAGGACCG 1 chrXV:228048-228572 ( 70) AACCAACTTGGCCATGGAGTCT 1 chrVII:730918-731416 ( 19) AACCAACTTGGCCATGGAGTCT 1 chrXVI:744062-744572 ( 16) CTACCACTAAGCTAAGGAGGCT 1 chrXVI:689297-689827 ( 52) TAACCACTCGGCCATAGTGCCC 1 chrXIV:102419-103020 ( 46) AACCAACTTGGCCATGGAGTCT 1 chrXIV:560467-561042 ( 41) TACCAACTTGGCCATAGAAGCC 1 chrVI:161964-162446 ( 72) TTACCACTAAACCACTTGCGCT 1 chrXIV:632366-632848 ( 41) AACCAACTTGGCCATGGAGTCA 1 chrX:531577-531677 ( 21) TTACCACTAAACCACTTGCGCT 1 chrVI:137248-137838 ( 46) AACCAACTTGGCCATGGAGTCA 1 chrV:130959-131396 ( 6) TAACCACTACACTATAAAACCT 1 chrII:347353-347891 ( 30) AGACCACTCGGCCAACCCTCCG 1 chrXVI:571975-572544 ( 59) TTACCACTAAACCACTTGCGCG 1 chrIV:519485-520011 ( 44) AGACCACTCGGCCAACCCTCCG 1 chrXV:281897-282412 ( 59) TTACCACTAAACCACTTGCGCG 1 chrXIII:183722-184170 ( 52) TTACCACTAAACCACTTGCGCG 1 chrIII:123429-123840 ( 44) ATACCTCTAGACCACACGCCCT 1 chrV:492149-492614 ( 73) TGACCATTGGGCCACGAGGAAT 1 chrV:117848-118372 ( 26) TACCATGTGCGCCACGAGGCCT 1 chrVII:422884-423357 ( 21) AGACCGCTCGGCCAAACAACCA 1 chrVII:857277-857678 ( 44) AGACCGCTCGGCCAAACAACCA 1 chrXII:628159-628670 ( 18) AGACCGCTCGGCCAAACAACCA 1 chrIV:359313-359867 ( 36) TACCAACTGAGCTAACAAGGAT 1 chrVII:115263-115767 ( 22) TACCAACTGAGCTAACAAGGAT 1 chrXIV:374677-375088 ( 36) TCCCAACTGAGCTAAGTCCGCT 1 chrX:538293-538393 ( 65) TTACCATTACGCCAACGGAACC 1 chrV:99906-100406 ( 26) CTTCCACTGCGCCACGGCGCTT 1 chrX:517639-517739 ( 36) CTTCCACTGCGCCACGGCGCTT 1 chrXIII:572701-573224 ( 23) TTCCTACTGAGCTACTGAAGCT 1 chrXV:709931-710425 ( 72) CTTCCACTGCGCCACGGCGCTG 1 chrX:233713-233813 ( 37) TGACCATTGGGCCACGAGGAAC 1 chrIV:619756-620287 ( 50) TGACCATTGGGCCACGAGGAAC 1 chrX:422685-422785 ( 17) TTCCTACTGAGCTACTGAAGCA 1 chrXVI:559995-560559 ( 42) TCCCAACTGAGCTAAATCCGCT 1 chrVIII:358349-358826 ( 12) TCCCAACTGAGCTAAATCCGCT 1 chrVI:157730-158233 ( 56) TCCCAACTGAGCTAAATCCGCT 1 chrXV:976133-976754 ( 27) TTCCTACTGAGCTACTGAAGCG 1 chrXIII:379146-379612 ( 59) CTACCATTGAGCCACCGCTTCA 1 chrVIII:62532-62975 ( 51) TAACCACTATACTAAGATGGCA 1 chrVII:287222-287699 ( 25) CTACCATTGAGCCACCGCTTCA 1 chrXVI:55898-56611 ( 50) CTACCATTGAGCCACCGCTTCA 1 chrXI:302618-303212 ( 52) CTACCATTGAGCCACCGCTTCA 1 chrVIII:475585-475961 ( 35) TAGCCGCTACACTATTGGAACA 1 chrX:541246-541346 ( 61) TGACCATTAAACTATCACGGAT 1 chrIX:324094-324574 ( 70) TGACCATTAAACTATCACGGAA 1 chrXI:513187-513658 ( 11) TGACCATTAAACTATCACGGAA 1 chrXVI:520173-520546 ( 53) TTCCACCCAGGCCTCGCCGGAG 1 chrXV:83179-83515 ( 21) CATCATCTACGATACGGCCCCT 1 chrXV:866553-866974 ( 36) TAACACCCATACAAACCCAGAA 1 chrXIII:225332-225765 ( 32) TAACATCCGTGCATTACATCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAMCMACTRSGCCAHRVRRSCW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 45820 bayes= 6.5387 E= 2.0e-281 -20 -71 -1353 93 91 -241 -95 -24 40 143 -160 -324 -1353 248 -1353 -1353 -20 145 18 -365 151 -341 -241 -324 -1353 210 -440 -54 -1353 -282 -1353 161 28 -60 115 -178 -66 88 129 -365 -20 -1353 200 -1353 -524 246 -1353 -1353 -424 213 -1353 -72 162 -1353 -1353 -424 5 127 -1353 -43 -29 18 124 -154 5 45 59 -107 15 -16 124 -243 37 18 84 -243 -224 132 118 -207 -192 231 -1353 -365 12 -208 -24 51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAMCMACTRSGCCAHRVRRSCW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 118 E= 2.0e-281 0.279661 0.110169 0.000000 0.610169 0.601695 0.033898 0.093220 0.271186 0.423729 0.483051 0.059322 0.033898 0.000000 1.000000 0.000000 0.000000 0.279661 0.491525 0.203390 0.025424 0.915254 0.016949 0.033898 0.033898 0.000000 0.771186 0.008475 0.220339 0.000000 0.025424 0.000000 0.974576 0.389831 0.118644 0.398305 0.093220 0.203390 0.330508 0.440678 0.025424 0.279661 0.000000 0.720339 0.000000 0.008475 0.991525 0.000000 0.000000 0.016949 0.788136 0.000000 0.194915 0.983051 0.000000 0.000000 0.016949 0.330508 0.432203 0.000000 0.237288 0.262712 0.203390 0.423729 0.110169 0.330508 0.245763 0.271186 0.152542 0.355932 0.161017 0.423729 0.059322 0.415254 0.203390 0.322034 0.059322 0.067797 0.449153 0.406780 0.076271 0.084746 0.889831 0.000000 0.025424 0.347458 0.042373 0.152542 0.457627 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAMCMACTRSGCCAHRVRRSCW MEME-1 regular expression -------------------------------------------------------------------------------- [TA][AT][CA]C[CAG]A[CT]T[GA][GCA][GA]CCA[CAT][GAC][AGC][GA][AGC][CG]C[TA] -------------------------------------------------------------------------------- Time 334.58 secs. ******************************************************************************** ******************************************************************************** MOTIF GRRTCGAACCSMKGAYCTYMNGRTT MEME-2 width = 25 sites = 62 llr = 1194 E-value = 1.0e-231 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRRTCGAACCSMKGAYCTYMNGRTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :54:::aa:::3:37::::32:41: pos.-specific C ::2:7:::a8651::673553321: probability G a43::a:::132471:111:27412 matrix T ::1a3::::2::4:2427413::87 bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 * * ** * Relative 1.5 * ******* * * Entropy 1.2 * ******* * * * (27.8 bits) 1.0 ** ******** * ** * 0.7 ** ******** ***** * ** 0.5 ** ***************** **** 0.2 ******************** **** 0.0 ------------------------- Multilevel GAATCGAACCCCGGACCTCCCGATT consensus GG T GATATT CTATCG G sequence G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTCGAACCSMKGAYCTYMNGRTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------- chrIV:667769-668291 + 39 3.39e-12 GTCTCTAGCG GGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrIX:183237-183732 + 18 3.39e-12 GTCTCTAGCG GGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrXII:1051894-1052363 + 5 3.39e-12 AGCG GGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrIX:210471-210917 - 58 3.39e-12 GTCTCTAGCG GGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrXIV:602152-602502 - 72 3.39e-12 AGCG GGATCGAACCGCTGATCCCCGCGTT ATTAGCACGG chrII:197230-197916 - 8 3.39e-12 GTCTCTAGCG GGATCGAACCGCTGATCCCCGCGTT ATTAGCA chrXI:140753-141373 + 17 9.14e-12 CCGATACGGG GAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrIX:370172-370694 - 69 9.14e-12 ATACGGG GAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrXIII:290569-291058 - 73 9.14e-12 GGG GAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrVII:328317-328908 - 56 9.14e-12 CCGATACGGG GAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrV:354666-355282 - 45 9.14e-12 CCGATACGGG GAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrX:115763-115863 + 12 9.14e-12 CCGATACGGG GAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrVII:401338-401810 + 15 9.14e-12 CCGATACGGG GAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrVII:541536-542197 - 69 9.14e-12 ATACGGG GAGTCGAACCCCGGTCTCCACGGTG AAAGCGTGAT chrXIII:480439-480892 + 18 2.62e-11 CCCTGTAGGG GGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrV:135154-135779 + 21 2.62e-11 CCCTGTAGGG GGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrXVI:581823-582372 - 51 2.62e-11 CCCTGTAGGG GGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrVII:876156-876704 - 50 2.62e-11 CCCTGTAGGG GGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrVI:226522-226963 + 8 2.62e-11 TGTAGGG GGCTCGAACCCCTAACCTTATGATT AAGAGTCATA chrX:374220-374320 + 71 4.59e-11 CTCACGATGG GGGTCGAACCCATAATCTTCTGATT AGAAG chrVII:828496-829046 + 14 4.59e-11 CTCACGATGG GGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrII:405601-406213 - 56 4.59e-11 CTCACGATGG GGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrVII:405278-405778 - 27 4.59e-11 CTCACGATGG GGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrXIII:131575-132136 + 32 4.59e-11 CTCACGATGG GGGTCGAACCCATAATCTTCTGATT AGAAGTCAGA chrI:165963-166629 - 57 1.15e-10 GACGCAACCG GAATCGAACCGATGACCTCTTCCTT GCAAGGGAAG chrXV:854001-854455 + 21 1.15e-10 GACGCAACCG GAATCGAACCGATGACCTCTTCCTT GCAAGGGAAG chrIV:946116-946602 - 55 1.47e-10 TCCCGGGGGC GAGTCGAACGCCCGATCTCAAGATT TCGTAGTGAT chrX:542745-542845 + 13 1.47e-10 TCCCGGGGGC GAGTCGAACGCCCGATCTCAAGATT TCGTAGTGAT chrVI:167251-167707 - 60 1.47e-10 TCCCGGGGGC GAGTCGAACGCCCGATCTCAAGATT TCGTAGTGGT chrX:354022-354122 - 41 1.47e-10 TCCCGGGGGC GAGTCGAACGCCCGATCTCAAGATT TCGTAGTGGT chrIII:123429-123840 + 5 1.87e-10 CCGG GACTCGAACCCGGGACCTCCCGCAC CCTAAGCGAG chrIX:174790-175322 - 61 7.17e-10 CTTCCAATCG GATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrXV:353856-354312 + 19 7.17e-10 CTTCCAATCG GATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrIX:325507-326038 - 62 7.17e-10 CTTCCAATCG GATTTGAACCGATGATCTCCACATT ACTAGTGTGG chrXIV:104606-105171 - 3 7.17e-10 CTTCCAATCG GATTTGAACCGATGATCTCCACATT AC chrX:531577-531677 - 56 1.20e-09 CGCAAGCCCG GAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrXIII:183722-184170 + 14 1.20e-09 CGCAAGCCCG GAATCGAACCGGGGGCCCAACGATG GCAACGTTGG chrXV:976133-976754 - 64 2.81e-09 CTCCAGGGGA GGTTCGAACTCTCGACCTTCAGATT ATGAGACTGA chrX:422685-422785 - 54 2.81e-09 CTCCAGGGGA GGTTCGAACTCTCGACCTTCAGATT ATGAGACTGA chrXV:980424-981059 - 60 2.81e-09 GGCGAGCTGG GAATTGAACCCAGGGCCTCTCGCAT GCTTTGTTCC chrXIV:546899-547379 - 71 2.81e-09 GCTGG GAATTGAACCCAGGGCCTCTCGCAT GCTTTGTCTT chrXI:578775-579266 - 54 3.08e-09 CCTCATAGGG GGCTCGAACCCCTGACATTTCGGTA TCCTTGCTTA chrXII:875232-875646 - 46 3.08e-09 CCTCATAGGG GGCTCGAACCCCTGACATTTCGGTA TCCTTGCTTA chrIV:488500-489082 + 68 3.37e-09 ATCCAACCGA GGTTCGAACTCGGGATCTTCGCCGT GTAAAGGC chrXII:687647-688186 + 5 3.68e-09 CCCA GGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrXI:379488-379972 - 37 3.68e-09 ATTTCGCCCA GGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrXV:663556-664142 + 25 3.68e-09 ATTTCGCCCA GGATCGAACTGGGGACGTTCTGCGT GTTAAGCAGA chrIV:619756-620287 + 10 4.02e-09 CCCCGCCAG GACTTGAACCTGGAATCTTCTGGTT CGTAGCCAGA chrXII:374164-374693 - 13 4.02e-09 TCCCCGCCAG GACTTGAACCTGGAATCTTCTGGTT CGTAGCCAGA chrV:492149-492614 + 33 4.02e-09 TCCCCGCCAG GACTTGAACCTGGAATCTTCTGGTT CGTAGCCAGA chrXIII:320967-321409 + 21 5.20e-09 GACGAGTCCG GAATCGAACCGGAGACCTCTCCCAT GCTAAGGGAG chrXII:656766-657195 + 16 5.20e-09 GACGAGTCCG GAATCGAACCGGAGACCTCTCCCAT GCTAAGGGAG chrVII:730918-731416 - 57 6.15e-09 ACCCCAGTGA GGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrVI:137248-137838 + 5 6.15e-09 GTGA GGGTTGAACTCACGATCTTGCGATT AACAGTCGCA chrV:250091-250563 - 44 6.68e-09 GTCCTACCCG GATTCGAACCGGGGTTGTCCGGATC AAAACCGAAA chrXII:426942-427443 - 25 6.75e-08 CCGCGACGGG GAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrXIII:463300-463872 - 53 6.75e-08 CCGCGACGGG GAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrVII:531444-531846 - 50 6.75e-08 CCGCGACGGG GAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrIX:324094-324574 + 31 6.75e-08 CCGCGACGGG GAATTGAACCCCGATCTGGCACGCG ACAAGCGCCC chrXVI:744062-744572 - 52 7.59e-08 CCACCTGTCA GAATTGAACTAACGACCTTTGCATT ACAAGTGCAA chrXVI:435649-436250 + 6 9.02e-08 ACTCA GGATCGAACTAAGGACCAACAGATT TGCAATCTGC chrV:99906-100406 - 62 1.25e-07 GCGCCGCTCG GTTTCGATCCGAGGACATCAGGGTT ATGAGCCCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTCGAACCSMKGAYCTYMNGRTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:667769-668291 3.4e-12 38_[+2]_37 chrIX:183237-183732 3.4e-12 17_[+2]_58 chrXII:1051894-1052363 3.4e-12 4_[+2]_71 chrIX:210471-210917 3.4e-12 57_[-2]_18 chrXIV:602152-602502 3.4e-12 71_[-2]_4 chrII:197230-197916 3.4e-12 7_[-2]_68 chrXI:140753-141373 9.1e-12 16_[+2]_59 chrIX:370172-370694 9.1e-12 68_[-2]_7 chrXIII:290569-291058 9.1e-12 72_[-2]_3 chrVII:328317-328908 9.1e-12 55_[-2]_20 chrV:354666-355282 9.1e-12 44_[-2]_31 chrX:115763-115863 9.1e-12 11_[+2]_64 chrVII:401338-401810 9.1e-12 14_[+2]_61 chrVII:541536-542197 9.1e-12 68_[-2]_7 chrXIII:480439-480892 2.6e-11 17_[+2]_58 chrV:135154-135779 2.6e-11 20_[+2]_55 chrXVI:581823-582372 2.6e-11 50_[-2]_25 chrVII:876156-876704 2.6e-11 49_[-2]_26 chrVI:226522-226963 2.6e-11 7_[+2]_68 chrX:374220-374320 4.6e-11 70_[+2]_5 chrVII:828496-829046 4.6e-11 13_[+2]_62 chrII:405601-406213 4.6e-11 55_[-2]_20 chrVII:405278-405778 4.6e-11 26_[-2]_49 chrXIII:131575-132136 4.6e-11 31_[+2]_44 chrI:165963-166629 1.1e-10 56_[-2]_19 chrXV:854001-854455 1.1e-10 20_[+2]_55 chrIV:946116-946602 1.5e-10 54_[-2]_21 chrX:542745-542845 1.5e-10 12_[+2]_63 chrVI:167251-167707 1.5e-10 59_[-2]_16 chrX:354022-354122 1.5e-10 40_[-2]_35 chrIII:123429-123840 1.9e-10 4_[+2]_71 chrIX:174790-175322 7.2e-10 60_[-2]_15 chrXV:353856-354312 7.2e-10 18_[+2]_57 chrIX:325507-326038 7.2e-10 61_[-2]_14 chrXIV:104606-105171 7.2e-10 2_[-2]_73 chrX:531577-531677 1.2e-09 55_[-2]_20 chrXIII:183722-184170 1.2e-09 13_[+2]_62 chrXV:976133-976754 2.8e-09 63_[-2]_12 chrX:422685-422785 2.8e-09 53_[-2]_22 chrXV:980424-981059 2.8e-09 59_[-2]_16 chrXIV:546899-547379 2.8e-09 70_[-2]_5 chrXI:578775-579266 3.1e-09 53_[-2]_22 chrXII:875232-875646 3.1e-09 45_[-2]_30 chrIV:488500-489082 3.4e-09 67_[+2]_8 chrXII:687647-688186 3.7e-09 4_[+2]_71 chrXI:379488-379972 3.7e-09 36_[-2]_39 chrXV:663556-664142 3.7e-09 24_[+2]_51 chrIV:619756-620287 4e-09 9_[+2]_66 chrXII:374164-374693 4e-09 12_[-2]_63 chrV:492149-492614 4e-09 32_[+2]_43 chrXIII:320967-321409 5.2e-09 20_[+2]_55 chrXII:656766-657195 5.2e-09 15_[+2]_60 chrVII:730918-731416 6.1e-09 56_[-2]_19 chrVI:137248-137838 6.1e-09 4_[+2]_71 chrV:250091-250563 6.7e-09 43_[-2]_32 chrXII:426942-427443 6.7e-08 24_[-2]_51 chrXIII:463300-463872 6.7e-08 52_[-2]_23 chrVII:531444-531846 6.7e-08 49_[-2]_26 chrIX:324094-324574 6.7e-08 30_[+2]_45 chrXVI:744062-744572 7.6e-08 51_[-2]_24 chrXVI:435649-436250 9e-08 5_[+2]_70 chrV:99906-100406 1.3e-07 61_[-2]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTCGAACCSMKGAYCTYMNGRTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRRTCGAACCSMKGAYCTYMNGRTT width=25 seqs=62 chrIV:667769-668291 ( 39) GGATCGAACCGCTGATCCCCGCGTT 1 chrIX:183237-183732 ( 18) GGATCGAACCGCTGATCCCCGCGTT 1 chrXII:1051894-1052363 ( 5) GGATCGAACCGCTGATCCCCGCGTT 1 chrIX:210471-210917 ( 58) GGATCGAACCGCTGATCCCCGCGTT 1 chrXIV:602152-602502 ( 72) GGATCGAACCGCTGATCCCCGCGTT 1 chrII:197230-197916 ( 8) GGATCGAACCGCTGATCCCCGCGTT 1 chrXI:140753-141373 ( 17) GAGTCGAACCCCGGTCTCCACGGTG 1 chrIX:370172-370694 ( 69) GAGTCGAACCCCGGTCTCCACGGTG 1 chrXIII:290569-291058 ( 73) GAGTCGAACCCCGGTCTCCACGGTG 1 chrVII:328317-328908 ( 56) GAGTCGAACCCCGGTCTCCACGGTG 1 chrV:354666-355282 ( 45) GAGTCGAACCCCGGTCTCCACGGTG 1 chrX:115763-115863 ( 12) GAGTCGAACCCCGGTCTCCACGGTG 1 chrVII:401338-401810 ( 15) GAGTCGAACCCCGGTCTCCACGGTG 1 chrVII:541536-542197 ( 69) GAGTCGAACCCCGGTCTCCACGGTG 1 chrXIII:480439-480892 ( 18) GGCTCGAACCCCTAACCTTATGATT 1 chrV:135154-135779 ( 21) GGCTCGAACCCCTAACCTTATGATT 1 chrXVI:581823-582372 ( 51) GGCTCGAACCCCTAACCTTATGATT 1 chrVII:876156-876704 ( 50) GGCTCGAACCCCTAACCTTATGATT 1 chrVI:226522-226963 ( 8) GGCTCGAACCCCTAACCTTATGATT 1 chrX:374220-374320 ( 71) GGGTCGAACCCATAATCTTCTGATT 1 chrVII:828496-829046 ( 14) GGGTCGAACCCATAATCTTCTGATT 1 chrII:405601-406213 ( 56) GGGTCGAACCCATAATCTTCTGATT 1 chrVII:405278-405778 ( 27) GGGTCGAACCCATAATCTTCTGATT 1 chrXIII:131575-132136 ( 32) GGGTCGAACCCATAATCTTCTGATT 1 chrI:165963-166629 ( 57) GAATCGAACCGATGACCTCTTCCTT 1 chrXV:854001-854455 ( 21) GAATCGAACCGATGACCTCTTCCTT 1 chrIV:946116-946602 ( 55) GAGTCGAACGCCCGATCTCAAGATT 1 chrX:542745-542845 ( 13) GAGTCGAACGCCCGATCTCAAGATT 1 chrVI:167251-167707 ( 60) GAGTCGAACGCCCGATCTCAAGATT 1 chrX:354022-354122 ( 41) GAGTCGAACGCCCGATCTCAAGATT 1 chrIII:123429-123840 ( 5) GACTCGAACCCGGGACCTCCCGCAC 1 chrIX:174790-175322 ( 61) GATTTGAACCGATGATCTCCACATT 1 chrXV:353856-354312 ( 19) GATTTGAACCGATGATCTCCACATT 1 chrIX:325507-326038 ( 62) GATTTGAACCGATGATCTCCACATT 1 chrXIV:104606-105171 ( 3) GATTTGAACCGATGATCTCCACATT 1 chrX:531577-531677 ( 56) GAATCGAACCGGGGGCCCAACGATG 1 chrXIII:183722-184170 ( 14) GAATCGAACCGGGGGCCCAACGATG 1 chrXV:976133-976754 ( 64) GGTTCGAACTCTCGACCTTCAGATT 1 chrX:422685-422785 ( 54) GGTTCGAACTCTCGACCTTCAGATT 1 chrXV:980424-981059 ( 60) GAATTGAACCCAGGGCCTCTCGCAT 1 chrXIV:546899-547379 ( 71) GAATTGAACCCAGGGCCTCTCGCAT 1 chrXI:578775-579266 ( 54) GGCTCGAACCCCTGACATTTCGGTA 1 chrXII:875232-875646 ( 46) GGCTCGAACCCCTGACATTTCGGTA 1 chrIV:488500-489082 ( 68) GGTTCGAACTCGGGATCTTCGCCGT 1 chrXII:687647-688186 ( 5) GGATCGAACTGGGGACGTTCTGCGT 1 chrXI:379488-379972 ( 37) GGATCGAACTGGGGACGTTCTGCGT 1 chrXV:663556-664142 ( 25) GGATCGAACTGGGGACGTTCTGCGT 1 chrIV:619756-620287 ( 10) GACTTGAACCTGGAATCTTCTGGTT 1 chrXII:374164-374693 ( 13) GACTTGAACCTGGAATCTTCTGGTT 1 chrV:492149-492614 ( 33) GACTTGAACCTGGAATCTTCTGGTT 1 chrXIII:320967-321409 ( 21) GAATCGAACCGGAGACCTCTCCCAT 1 chrXII:656766-657195 ( 16) GAATCGAACCGGAGACCTCTCCCAT 1 chrVII:730918-731416 ( 57) GGGTTGAACTCACGATCTTGCGATT 1 chrVI:137248-137838 ( 5) GGGTTGAACTCACGATCTTGCGATT 1 chrV:250091-250563 ( 44) GATTCGAACCGGGGTTGTCCGGATC 1 chrXII:426942-427443 ( 25) GAATTGAACCCCGATCTGGCACGCG 1 chrXIII:463300-463872 ( 53) GAATTGAACCCCGATCTGGCACGCG 1 chrVII:531444-531846 ( 50) GAATTGAACCCCGATCTGGCACGCG 1 chrIX:324094-324574 ( 31) GAATTGAACCCCGATCTGGCACGCG 1 chrXVI:744062-744572 ( 52) GAATTGAACTAACGACCTTTGCATT 1 chrXVI:435649-436250 ( 6) GGATCGAACTAAGGACCAACAGATT 1 chrV:99906-100406 ( 62) GTTTCGATCCGAGGACATCAGGGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTCGAACCSMKGAYCTYMNGRTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 44080 bayes= 9.4348 E= 1.0e-231 -1260 -1260 248 -1260 78 -1260 128 -431 21 -2 77 -114 -1260 -1260 -1260 164 -1260 205 -1260 -31 -1260 -1260 248 -1260 164 -1260 -1260 -1260 162 -1260 -1260 -431 -1260 248 -1260 -1260 -1260 211 -148 -99 -331 169 91 -273 -14 138 22 -331 -331 -31 128 27 -22 -1260 201 -1260 118 -1260 -148 -61 -1260 169 -1260 39 -273 195 -148 -73 -431 52 -148 105 -273 148 -148 27 1 148 -248 -114 -40 77 -16 -14 -1260 84 191 -1260 44 -2 111 -1260 -199 -148 -148 130 -331 -248 33 115 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTCGAACCSMKGAYCTYMNGRTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 62 E= 1.0e-231 0.000000 0.000000 1.000000 0.000000 0.548387 0.000000 0.435484 0.016129 0.370968 0.177419 0.306452 0.145161 0.000000 0.000000 0.000000 1.000000 0.000000 0.741935 0.000000 0.258065 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.983871 0.000000 0.000000 0.016129 0.000000 1.000000 0.000000 0.000000 0.000000 0.774194 0.064516 0.161290 0.032258 0.580645 0.338710 0.048387 0.290323 0.467742 0.209677 0.032258 0.032258 0.145161 0.435484 0.387097 0.274194 0.000000 0.725806 0.000000 0.725806 0.000000 0.064516 0.209677 0.000000 0.580645 0.000000 0.419355 0.048387 0.693548 0.064516 0.193548 0.016129 0.258065 0.064516 0.661290 0.048387 0.500000 0.064516 0.387097 0.322581 0.500000 0.032258 0.145161 0.241935 0.306452 0.161290 0.290323 0.000000 0.322581 0.677419 0.000000 0.435484 0.177419 0.387097 0.000000 0.080645 0.064516 0.064516 0.790323 0.032258 0.032258 0.225806 0.709677 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRRTCGAACCSMKGAYCTYMNGRTT MEME-2 regular expression -------------------------------------------------------------------------------- G[AG][AG]T[CT]GAACC[CG][CAG][GT][GA][AT][CT]C[TC][CT][CA][CTA][GC][AG]T[TG] -------------------------------------------------------------------------------- Time 627.19 secs. ******************************************************************************** ******************************************************************************** MOTIF DGRTGTAYGGRTGTD MEME-3 width = 15 sites = 112 llr = 1296 E-value = 5.9e-146 ******************************************************************************** -------------------------------------------------------------------------------- Motif DGRTGTAYGGRTGTD MEME-3 Description -------------------------------------------------------------------------------- Simplified A 335:::7:1:3::14 pos.-specific C 1::::214:::::3: probability G 4652a:2:9a71813 matrix T 31:8:8:6:::9163 bits 2.5 * 2.2 * * 2.0 * ** 1.7 * ** Relative 1.5 * ** * Entropy 1.2 ** ***** (16.7 bits) 1.0 **** ***** 0.7 ************ 0.5 ************* 0.2 *************** 0.0 --------------- Multilevel GGATGTATGGGTGTA consensus TAG GC A CT sequence A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGRTGTAYGGRTGTD MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------- chrIV:221952-222360 + 28 3.33e-10 AATGAGATAA GGGTGTACGGGTGTG GTAACCGTCG chrXIII:5264-5821 - 82 4.91e-09 GTTA GGGTGTGTGGGTGTG GTGTGTGGGT chrXI:666443-666790 + 45 4.91e-09 TTAGGGTTGT GGGTGTGTGGGTGTG GTGTGGGTGT chrIII:36-517 - 71 4.91e-09 GTGTGGGTGT GGGTGTGTGGGTGTG GTGTGTGGGT chrXIV:6582-6840 - 3 4.91e-09 GTGTGGGTGT GGGTGTGTGGGTGTG GG chrVI:4426-4969 - 57 4.91e-09 GTGTGGGTGT GGGTGTGTGGGTGTG GTGTGTGTGG chrXII:11044-11499 - 77 4.91e-09 TGTGGGTGT GGGTGTGTGGGTGTG GTGTGGGTGT chrXVI:866379-866809 + 43 6.89e-09 CACAGAGGTT TGGTGTATGGGTGTA TTTCCGTTCG chrVIII:382879-383411 + 5 1.89e-08 TTCA TGATGTATGGGTGTA TCGGATGTTC chrXII:5399-5905 - 63 2.30e-08 GGTGTGGGTG TGGTGTGTGGGTGTG GTGTATATAT chrVIII:562272-562615 + 72 2.30e-08 AGTGTGGGTG TGGTGTGTGGGTGTG GGTGTGTGTG chrXV:34-236 - 1 2.30e-08 TGTGTGTGGG TGGTGTGTGGGTGTG chrXII:1064875-1065374 + 18 2.30e-08 TGTGTGTGTG TGGTGTGTGGGTGTG GTGGGTGTGG chrIV:31-298 - 3 2.30e-08 GGTGTGGGTG TGGTGTGTGGGTGTG GG chrXII:932038-932527 + 34 4.38e-08 ACAGATGTAC GGATGTACGGATGTA CGGATGTATA chrVII:149108-149529 + 49 7.49e-08 ATGTATGGGT GGGTGTATGGATGCT GTAAGCACAG chrV:69007-69382 + 35 7.49e-08 CGAAGCTTTG TGGGGTACGGGTGCA TGCTCGGCTT chrXIII:145858-146298 - 55 7.49e-08 GTATGGTGTA TGGTGTATGGATGTA CAAAAATGCT chrIII:163386-163944 + 31 7.49e-08 AGCCGCGGTT GGGTGCGTGGGTGCG GTAATTTAAC chrXV:960157-960587 - 23 9.05e-08 ATTCCGATGA GGGTGTATGGGTGGT TTGAAAAAAA chrX:703265-703365 + 28 1.04e-07 AATAAATAGT GGATGCATGGGTGCT TCCACGCGTC chrIV:525106-525382 + 8 1.48e-07 TTTGGTG TAGTGTATGGGTGTT GTGAAAATAT chrVII:10188-10398 - 85 1.48e-07 A TGATGCACGGGTGCA CTGTTTAAAA chrXVI:76323-76721 + 70 1.48e-07 ACACATCCGT GGATGTACGGGTGAA AATACAGTCA chrVIII:125921-126316 - 33 1.68e-07 GTAAAGATGT AGGTGTACGGATGCA TTAACGTCTT chrXIV:783875-784154 + 72 1.95e-07 AGTGTTAGGG TAGTGTGTGGGTGTG GTGTGTGTGG chrIX:254230-254553 + 16 2.32e-07 GCGGCAATTA GAATGTGTGGGTGCG GAAGCTCGCC chrXIII:754404-754834 + 2 2.63e-07 T GGATGTATGGGGGTA TTTTATGTTT chrIV:1355700-1356040 + 18 2.63e-07 AAAATACTAT AAATGTATGGGTGTA ATTTTAACCG chrVIII:556684-557235 + 27 2.63e-07 GTGTGGGTGT GTGTGTGTGGGTGTG TGTGGGTGTG chrII:592872-593300 + 48 3.45e-07 TGGAGTTCAA AGATGTATGGATGCA AGAAAAGAGG chrVII:726413-726784 - 38 3.45e-07 TGGGTGTATA TAGGGTATGGGTGTA CAGTTAATTT chrXII:645777-646207 - 3 3.89e-07 TTCGCCCGAC GGGTGAATGGGTGTG GG chrVII:277035-277406 - 56 3.89e-07 CCCATAGAGC GGGTGTATGGGTCTA GCTTAAATAC chrII:181351-181634 - 52 3.89e-07 GTATTCAATG TAATGTATGGGTGCT TTGTAAAGGG chrII:44967-45367 - 52 4.44e-07 AACATACATA GAATGTACGGATGCA TGATTGTCTC chrXVI:378645-379068 + 33 4.44e-07 ATGAGAACTC GAATGTACGGATGTT TTCTCTGAAT chrVII:555284-555716 - 59 5.05e-07 CAAACACCTT TAATGCACGGGTGTA AAAGGGATGT chrX:607850-607950 - 37 5.05e-07 GGGTTAAAAA GGATGTATGGATGGA GGGTTGGCAT chrVII:483294-483749 + 76 5.64e-07 CAAAACAGAG TGATGTATGGGTGAT CCCAGCAATG chrV:396166-396594 - 48 5.64e-07 GGGTTCACAA AAGTGTACGGATGTA TACAACAGGG chrIV:1062890-1063084 + 19 5.64e-07 TGCCATCATG CGATGTGTGGGTGCT ATTTATTTTC chrXIII:924137-924419 + 74 6.43e-07 AGGGTAGTGT TAGGGTGTGGGTGTG GTGTGTGTGT chrIX:68165-68538 - 48 6.43e-07 TACATCTTAG TAATGTACGGATGTA ATAAACTCAA chrXVI:302611-303016 - 65 7.34e-07 GGGTGTTTTA GGATGTCTGGATGTA CAAGTTAGCT chrIV:411248-411636 - 42 7.34e-07 TTTGGGTGCC CGGGGTGTGGGTGTT TGATTTGTTT chrXVI:731902-732381 - 12 8.14e-07 CAACCATCCT AAAGGTATGGGTGTA CTGACGATGC chrII:415468-415898 + 49 8.14e-07 CTGGATGACA AAATGCATGGGTGTA AAAAAGGAAA chrXV:94428-94865 - 38 8.14e-07 CCGAAGACAA TAATGCATGGGTGTT AATTCTATTT chrVI:223901-224195 + 58 8.14e-07 GGGTCTAAGA GTATGTACGGATGTA AAAGAAAACA chrXV:79773-80132 + 45 9.15e-07 CACTTATTTA ATATGTACGGGTGTT TACATGGAGT chrX:75275-75375 + 55 9.15e-07 TTTCAAATAG TGAGGTGTGGATGTA TAGAGGAATT chrXII:1028140-1028591 - 82 1.04e-06 ATTT TGGTGCATGGGTGAT ATTTTGTCTT chrXIII:224052-224424 + 1 1.04e-06 . AAATGTATGGATGTA AAATTCAGTA chrIV:321666-321980 - 25 1.15e-06 AAATAAAGAT TGGTGTACGGAGGTA AAGGTATGAA chrXV:968111-968385 + 70 1.28e-06 CAAAAGCGTG GGGTGCGTGGGCGTG CGCTGCTCGA chrXII:282490-282888 - 17 1.44e-06 CGGAGGGAAA AGATGTACAGGTGTA AAAAAGCACC chrII:605682-606149 - 50 1.44e-06 GTGATGGTGA AGATGTACAGGTGTA AAACTGTCAG chrXII:522141-522435 - 64 1.44e-06 GGAAAACCTT TTGTGTACGGATGTT TAGTTAATAA chrVIII:505778-506254 + 34 1.44e-06 TGTCTGGGTG AAATGTATGGATGCA TAATTGTCTC chrIV:358113-358436 + 24 1.60e-06 CCTTGTCAGA TAATGTATGGGTGGT GTGTACACCA chrV:423093-423478 - 36 1.60e-06 TGGGTGTAGA AGGTGTACGGAGGTA AATATGCAGC chrV:140368-140928 + 76 1.60e-06 CGGCATTGTA AAAGGTATGGGTGCT TTGTGCGTCC chrXI:382196-382456 - 28 1.78e-06 GTGTTGGGTG TGATGTCCGGATGCA ACAGCAGCAA chrVI:221728-222096 + 57 1.98e-06 TGGGTGTTAA AAATGTACGGGTGAA AAAAGTCTTA chrXIV:495177-495608 + 35 1.98e-06 AATTTTTAAA GGAGGTTTGGGTGTG TATAGTGTAC chrXII:897650-898041 - 65 1.98e-06 TGGGTTTTTT GGAGGTACAGGTGTT GTAGAATTCT chrXII:498433-498993 - 9 2.42e-06 ATTCCTTACA GGATGCACGGAGGTA AACAGGAA chrXV:216228-216689 - 50 2.42e-06 CTGGGTTGAG GAAGGCGCGGGTGCT CGGATGTTCC chrXII:498433-498986 - 13 2.42e-06 ATTCCTTACA GGATGCACGGAGGTA AACAGGAAAG chrV:270354-270717 - 1 2.69e-06 ACATTTAGTG GTATGTATGGGTGAT chrV:13372-13557 - 18 2.69e-06 TGGATTTCTG AGAGGTATGGGTGTC ATTTCCTTAA chrXII:818751-819202 - 72 2.94e-06 ACAATAATCA ATATGTACGGATGTT GGAAAGGTAT chrXIV:444454-444817 + 35 3.26e-06 ACGGATTTAA AGAGGTACGGATGGA GACCGTAGAA chrXII:781379-781938 + 47 3.26e-06 GGGTTTATGA AAATGCACGGATGCA TTTTCTCTAG chrIV:976568-976693 - 82 3.61e-06 ATTG TGGTGTATGGGTACT ATGCACAGCC chrXIV:330777-331121 - 50 3.96e-06 GTTTTACTTT AGATGTAAGGATGTA AGATCTCTGA chrIV:1300920-1301375 - 11 4.35e-06 CAAACATCCA CAGTGCACGGATGTT TGAAGGAAAA chrXV:505088-505521 - 39 4.35e-06 ATAAGGTTCA TTGTGTATGGGTTTG AAATGAATGA chrX:73348-73448 - 24 4.80e-06 CTTTTCAGTG TGGTGCAAGGATGTA CAATGATGTG chrX:651214-651314 - 46 4.80e-06 GAATAATTAT GGGTATATGGGTGTT GTTGTATAAA chrXVI:699913-700446 - 39 5.77e-06 TTTGAAGCTA TGGTGTGTGGGGGAT CACTTGTGGG chrXV:167893-168499 + 41 5.77e-06 AAACTTAAAT ATAGGCACGGGTGTT TAAAGCCGCC chrXII:48639-49117 + 74 6.32e-06 AGGGTGTCTA AGATGTACGGATCTT CATTGGGATG chrXII:837775-838131 + 30 6.88e-06 CAGGGCTTCC TAGTGTACAGATGTA TGTCGGATGA chrVII:856734-856980 + 56 6.88e-06 TCCATTGGTG CGGTGTATGGGCGGG TACCCTCAAA chrXI:618747-619230 + 72 7.54e-06 CAAATCTATT AGAGGCACGGATGGA AATAGTATTT chrXV:109747-110021 + 65 8.25e-06 GTTAAACGTG TGGTTTATGGGTGCA CCAGGGCTTT chrII:332274-332818 - 28 9.78e-06 TTGGGTTTAG AATTGTATGGGTGCA GCAAGGAAAT chrXVI:121322-121752 - 73 9.78e-06 AAATTAGATG TGGTGTTTGGGTTTA TTCCATTTGA chrIV:835754-836246 - 13 1.07e-05 CTTTGAGCTG AGGTGTGCGGTTGCG GGGCGTGGGT chrXIII:733303-733492 + 49 1.16e-05 TTTCTGTATG TGGTGTACGGATTAT GTGTAACTGT chrIV:117060-117645 - 67 1.16e-05 ATGGGTGTAG ATATGTATGGGTCTG AGATTAATAC chrIV:1450868-1451275 + 61 1.26e-05 TAAAATACAA ATATGTACAGGTGTT AATGTCTAAA chrXV:978751-979161 + 31 1.26e-05 GTATACACAA GGATGAATGGGTTCT ACGACACCGC chrX:90059-90159 - 33 1.37e-05 GTATGGGTGA GAATGTCCAGGTGCA AATTGAAAAG chrIX:99622-100050 + 41 1.48e-05 TGGTGTTACA TGGTGTACCGATGCT TTAATTGCAC chrXII:950182-950364 - 46 1.74e-05 GTCCTAAATG CGGTGTGTGGGTTAT AAGATGCCGC chrXI:158175-158696 - 14 1.88e-05 TTTATTTCCA GTGTGCACGGGTTGA AATAAATGAA chrIII:124450-124880 + 84 1.88e-05 ACGTCTTCAA GAATGCAAGGATGCT GC chrXI:99714-99952 - 58 2.03e-05 GAGGAGCCGT GGGTGCACGGGCATG GAAGGCTGAT chrXVI:520173-520546 + 23 2.19e-05 ATGCATGCCT GCAGGTCTGGGTGTA CCCCCTGCCT chrVIII:548648-548799 + 42 2.36e-05 GGTTAACATT GGTGGTACGGGTTTT CCGTTTACTG chrXV:281897-282412 + 28 2.75e-05 TCGCTTAAAT AGAGGAGTGGATGCT CAGGATAACA chrII:407637-408067 + 14 3.17e-05 CCCTTTATTT TGAGGAATGGGTTCG AATTTATCAT chrIX:257353-257767 - 22 3.66e-05 CACAACTTTG CGGTGTACAGATGTC GTCACATACC chrXVI:431247-431677 - 11 3.93e-05 AGGGTGTGGG GAGTGTACAGGTACA TTTACATACA chrII:167830-168233 - 53 4.21e-05 CTGGTGAAAA ATATGTCTGGGTTTT AAAACACTGT chrXII:1018902-1019407 + 62 4.21e-05 CAACGTTTCC GTGGGTCTGGGTCCA CAACAGAAAA chrII:165094-165446 - 36 5.51e-05 TGCTCTAACG CGGTGTATGGGCTAG ATTCGTAATA chrXIII:551336-551821 + 14 7.17e-05 TATGGGTGCG TAATGTACAGATTTT ATGGCACTGA chrVII:609526-609782 + 27 7.64e-05 CTGGCATCTC TAATGTTAGGATGTG AAGTTTAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGRTGTAYGGRTGTD MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:221952-222360 3.3e-10 27_[+3]_58 chrXIII:5264-5821 4.9e-09 81_[-3]_4 chrXI:666443-666790 4.9e-09 44_[+3]_41 chrIII:36-517 4.9e-09 70_[-3]_15 chrXIV:6582-6840 4.9e-09 2_[-3]_83 chrVI:4426-4969 4.9e-09 56_[-3]_29 chrXII:11044-11499 4.9e-09 76_[-3]_9 chrXVI:866379-866809 6.9e-09 42_[+3]_43 chrVIII:382879-383411 1.9e-08 4_[+3]_81 chrXII:5399-5905 2.3e-08 62_[-3]_23 chrVIII:562272-562615 2.3e-08 71_[+3]_14 chrXV:34-236 2.3e-08 [-3]_85 chrXII:1064875-1065374 2.3e-08 17_[+3]_68 chrIV:31-298 2.3e-08 2_[-3]_83 chrXII:932038-932527 4.4e-08 33_[+3]_52 chrVII:149108-149529 7.5e-08 48_[+3]_37 chrV:69007-69382 7.5e-08 34_[+3]_51 chrXIII:145858-146298 7.5e-08 54_[-3]_31 chrIII:163386-163944 7.5e-08 30_[+3]_55 chrXV:960157-960587 9e-08 22_[-3]_63 chrX:703265-703365 1e-07 27_[+3]_58 chrIV:525106-525382 1.5e-07 7_[+3]_78 chrVII:10188-10398 1.5e-07 84_[-3]_1 chrXVI:76323-76721 1.5e-07 69_[+3]_16 chrVIII:125921-126316 1.7e-07 32_[-3]_53 chrXIV:783875-784154 2e-07 71_[+3]_14 chrIX:254230-254553 2.3e-07 15_[+3]_70 chrXIII:754404-754834 2.6e-07 1_[+3]_84 chrIV:1355700-1356040 2.6e-07 17_[+3]_68 chrVIII:556684-557235 2.6e-07 26_[+3]_59 chrII:592872-593300 3.5e-07 47_[+3]_38 chrVII:726413-726784 3.5e-07 37_[-3]_48 chrXII:645777-646207 3.9e-07 2_[-3]_83 chrVII:277035-277406 3.9e-07 55_[-3]_30 chrII:181351-181634 3.9e-07 51_[-3]_34 chrII:44967-45367 4.4e-07 51_[-3]_34 chrXVI:378645-379068 4.4e-07 32_[+3]_53 chrVII:555284-555716 5.1e-07 58_[-3]_27 chrX:607850-607950 5.1e-07 36_[-3]_49 chrVII:483294-483749 5.6e-07 75_[+3]_10 chrV:396166-396594 5.6e-07 47_[-3]_38 chrIV:1062890-1063084 5.6e-07 18_[+3]_67 chrXIII:924137-924419 6.4e-07 73_[+3]_12 chrIX:68165-68538 6.4e-07 47_[-3]_38 chrXVI:302611-303016 7.3e-07 64_[-3]_21 chrIV:411248-411636 7.3e-07 41_[-3]_44 chrXVI:731902-732381 8.1e-07 11_[-3]_74 chrII:415468-415898 8.1e-07 48_[+3]_37 chrXV:94428-94865 8.1e-07 37_[-3]_48 chrVI:223901-224195 8.1e-07 57_[+3]_28 chrXV:79773-80132 9.2e-07 44_[+3]_41 chrX:75275-75375 9.2e-07 54_[+3]_31 chrXII:1028140-1028591 1e-06 81_[-3]_4 chrXIII:224052-224424 1e-06 [+3]_85 chrIV:321666-321980 1.1e-06 24_[-3]_61 chrXV:968111-968385 1.3e-06 69_[+3]_16 chrXII:282490-282888 1.4e-06 16_[-3]_69 chrII:605682-606149 1.4e-06 49_[-3]_36 chrXII:522141-522435 1.4e-06 63_[-3]_22 chrVIII:505778-506254 1.4e-06 33_[+3]_52 chrIV:358113-358436 1.6e-06 23_[+3]_62 chrV:423093-423478 1.6e-06 35_[-3]_50 chrV:140368-140928 1.6e-06 75_[+3]_10 chrXI:382196-382456 1.8e-06 27_[-3]_58 chrVI:221728-222096 2e-06 56_[+3]_29 chrXIV:495177-495608 2e-06 34_[+3]_51 chrXII:897650-898041 2e-06 64_[-3]_21 chrXII:498433-498993 2.4e-06 8_[-3]_77 chrXV:216228-216689 2.4e-06 49_[-3]_36 chrXII:498433-498986 2.4e-06 12_[-3]_73 chrV:270354-270717 2.7e-06 [-3]_85 chrV:13372-13557 2.7e-06 17_[-3]_68 chrXII:818751-819202 2.9e-06 71_[-3]_14 chrXIV:444454-444817 3.3e-06 34_[+3]_51 chrXII:781379-781938 3.3e-06 46_[+3]_39 chrIV:976568-976693 3.6e-06 81_[-3]_4 chrXIV:330777-331121 4e-06 49_[-3]_36 chrIV:1300920-1301375 4.4e-06 10_[-3]_75 chrXV:505088-505521 4.4e-06 38_[-3]_47 chrX:73348-73448 4.8e-06 23_[-3]_62 chrX:651214-651314 4.8e-06 45_[-3]_40 chrXVI:699913-700446 5.8e-06 38_[-3]_47 chrXV:167893-168499 5.8e-06 40_[+3]_45 chrXII:48639-49117 6.3e-06 73_[+3]_12 chrXII:837775-838131 6.9e-06 29_[+3]_56 chrVII:856734-856980 6.9e-06 55_[+3]_30 chrXI:618747-619230 7.5e-06 71_[+3]_14 chrXV:109747-110021 8.3e-06 64_[+3]_21 chrII:332274-332818 9.8e-06 27_[-3]_58 chrXVI:121322-121752 9.8e-06 72_[-3]_13 chrIV:835754-836246 1.1e-05 12_[-3]_73 chrXIII:733303-733492 1.2e-05 48_[+3]_37 chrIV:117060-117645 1.2e-05 66_[-3]_19 chrIV:1450868-1451275 1.3e-05 60_[+3]_25 chrXV:978751-979161 1.3e-05 30_[+3]_55 chrX:90059-90159 1.4e-05 32_[-3]_53 chrIX:99622-100050 1.5e-05 40_[+3]_45 chrXII:950182-950364 1.7e-05 45_[-3]_40 chrXI:158175-158696 1.9e-05 13_[-3]_72 chrIII:124450-124880 1.9e-05 83_[+3]_2 chrXI:99714-99952 2e-05 57_[-3]_28 chrXVI:520173-520546 2.2e-05 22_[+3]_63 chrVIII:548648-548799 2.4e-05 41_[+3]_44 chrXV:281897-282412 2.7e-05 27_[+3]_58 chrII:407637-408067 3.2e-05 13_[+3]_72 chrIX:257353-257767 3.7e-05 21_[-3]_64 chrXVI:431247-431677 3.9e-05 10_[-3]_75 chrII:167830-168233 4.2e-05 52_[-3]_33 chrXII:1018902-1019407 4.2e-05 61_[+3]_24 chrII:165094-165446 5.5e-05 35_[-3]_50 chrXIII:551336-551821 7.2e-05 13_[+3]_72 chrVII:609526-609782 7.6e-05 26_[+3]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGRTGTAYGGRTGTD MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DGRTGTAYGGRTGTD width=15 seqs=112 chrIV:221952-222360 ( 28) GGGTGTACGGGTGTG 1 chrXIII:5264-5821 ( 82) GGGTGTGTGGGTGTG 1 chrXI:666443-666790 ( 45) GGGTGTGTGGGTGTG 1 chrIII:36-517 ( 71) GGGTGTGTGGGTGTG 1 chrXIV:6582-6840 ( 3) GGGTGTGTGGGTGTG 1 chrVI:4426-4969 ( 57) GGGTGTGTGGGTGTG 1 chrXII:11044-11499 ( 77) GGGTGTGTGGGTGTG 1 chrXVI:866379-866809 ( 43) TGGTGTATGGGTGTA 1 chrVIII:382879-383411 ( 5) TGATGTATGGGTGTA 1 chrXII:5399-5905 ( 63) TGGTGTGTGGGTGTG 1 chrVIII:562272-562615 ( 72) TGGTGTGTGGGTGTG 1 chrXV:34-236 ( 1) TGGTGTGTGGGTGTG 1 chrXII:1064875-1065374 ( 18) TGGTGTGTGGGTGTG 1 chrIV:31-298 ( 3) TGGTGTGTGGGTGTG 1 chrXII:932038-932527 ( 34) GGATGTACGGATGTA 1 chrVII:149108-149529 ( 49) GGGTGTATGGATGCT 1 chrV:69007-69382 ( 35) TGGGGTACGGGTGCA 1 chrXIII:145858-146298 ( 55) TGGTGTATGGATGTA 1 chrIII:163386-163944 ( 31) GGGTGCGTGGGTGCG 1 chrXV:960157-960587 ( 23) GGGTGTATGGGTGGT 1 chrX:703265-703365 ( 28) GGATGCATGGGTGCT 1 chrIV:525106-525382 ( 8) TAGTGTATGGGTGTT 1 chrVII:10188-10398 ( 85) TGATGCACGGGTGCA 1 chrXVI:76323-76721 ( 70) GGATGTACGGGTGAA 1 chrVIII:125921-126316 ( 33) AGGTGTACGGATGCA 1 chrXIV:783875-784154 ( 72) TAGTGTGTGGGTGTG 1 chrIX:254230-254553 ( 16) GAATGTGTGGGTGCG 1 chrXIII:754404-754834 ( 2) GGATGTATGGGGGTA 1 chrIV:1355700-1356040 ( 18) AAATGTATGGGTGTA 1 chrVIII:556684-557235 ( 27) GTGTGTGTGGGTGTG 1 chrII:592872-593300 ( 48) AGATGTATGGATGCA 1 chrVII:726413-726784 ( 38) TAGGGTATGGGTGTA 1 chrXII:645777-646207 ( 3) GGGTGAATGGGTGTG 1 chrVII:277035-277406 ( 56) GGGTGTATGGGTCTA 1 chrII:181351-181634 ( 52) TAATGTATGGGTGCT 1 chrII:44967-45367 ( 52) GAATGTACGGATGCA 1 chrXVI:378645-379068 ( 33) GAATGTACGGATGTT 1 chrVII:555284-555716 ( 59) TAATGCACGGGTGTA 1 chrX:607850-607950 ( 37) GGATGTATGGATGGA 1 chrVII:483294-483749 ( 76) TGATGTATGGGTGAT 1 chrV:396166-396594 ( 48) AAGTGTACGGATGTA 1 chrIV:1062890-1063084 ( 19) CGATGTGTGGGTGCT 1 chrXIII:924137-924419 ( 74) TAGGGTGTGGGTGTG 1 chrIX:68165-68538 ( 48) TAATGTACGGATGTA 1 chrXVI:302611-303016 ( 65) GGATGTCTGGATGTA 1 chrIV:411248-411636 ( 42) CGGGGTGTGGGTGTT 1 chrXVI:731902-732381 ( 12) AAAGGTATGGGTGTA 1 chrII:415468-415898 ( 49) AAATGCATGGGTGTA 1 chrXV:94428-94865 ( 38) TAATGCATGGGTGTT 1 chrVI:223901-224195 ( 58) GTATGTACGGATGTA 1 chrXV:79773-80132 ( 45) ATATGTACGGGTGTT 1 chrX:75275-75375 ( 55) TGAGGTGTGGATGTA 1 chrXII:1028140-1028591 ( 82) TGGTGCATGGGTGAT 1 chrXIII:224052-224424 ( 1) AAATGTATGGATGTA 1 chrIV:321666-321980 ( 25) TGGTGTACGGAGGTA 1 chrXV:968111-968385 ( 70) GGGTGCGTGGGCGTG 1 chrXII:282490-282888 ( 17) AGATGTACAGGTGTA 1 chrII:605682-606149 ( 50) AGATGTACAGGTGTA 1 chrXII:522141-522435 ( 64) TTGTGTACGGATGTT 1 chrVIII:505778-506254 ( 34) AAATGTATGGATGCA 1 chrIV:358113-358436 ( 24) TAATGTATGGGTGGT 1 chrV:423093-423478 ( 36) AGGTGTACGGAGGTA 1 chrV:140368-140928 ( 76) AAAGGTATGGGTGCT 1 chrXI:382196-382456 ( 28) TGATGTCCGGATGCA 1 chrVI:221728-222096 ( 57) AAATGTACGGGTGAA 1 chrXIV:495177-495608 ( 35) GGAGGTTTGGGTGTG 1 chrXII:897650-898041 ( 65) GGAGGTACAGGTGTT 1 chrXII:498433-498993 ( 9) GGATGCACGGAGGTA 1 chrXV:216228-216689 ( 50) GAAGGCGCGGGTGCT 1 chrXII:498433-498986 ( 13) GGATGCACGGAGGTA 1 chrV:270354-270717 ( 1) GTATGTATGGGTGAT 1 chrV:13372-13557 ( 18) AGAGGTATGGGTGTC 1 chrXII:818751-819202 ( 72) ATATGTACGGATGTT 1 chrXIV:444454-444817 ( 35) AGAGGTACGGATGGA 1 chrXII:781379-781938 ( 47) AAATGCACGGATGCA 1 chrIV:976568-976693 ( 82) TGGTGTATGGGTACT 1 chrXIV:330777-331121 ( 50) AGATGTAAGGATGTA 1 chrIV:1300920-1301375 ( 11) CAGTGCACGGATGTT 1 chrXV:505088-505521 ( 39) TTGTGTATGGGTTTG 1 chrX:73348-73448 ( 24) TGGTGCAAGGATGTA 1 chrX:651214-651314 ( 46) GGGTATATGGGTGTT 1 chrXVI:699913-700446 ( 39) TGGTGTGTGGGGGAT 1 chrXV:167893-168499 ( 41) ATAGGCACGGGTGTT 1 chrXII:48639-49117 ( 74) AGATGTACGGATCTT 1 chrXII:837775-838131 ( 30) TAGTGTACAGATGTA 1 chrVII:856734-856980 ( 56) CGGTGTATGGGCGGG 1 chrXI:618747-619230 ( 72) AGAGGCACGGATGGA 1 chrXV:109747-110021 ( 65) TGGTTTATGGGTGCA 1 chrII:332274-332818 ( 28) AATTGTATGGGTGCA 1 chrXVI:121322-121752 ( 73) TGGTGTTTGGGTTTA 1 chrIV:835754-836246 ( 13) AGGTGTGCGGTTGCG 1 chrXIII:733303-733492 ( 49) TGGTGTACGGATTAT 1 chrIV:117060-117645 ( 67) ATATGTATGGGTCTG 1 chrIV:1450868-1451275 ( 61) ATATGTACAGGTGTT 1 chrXV:978751-979161 ( 31) GGATGAATGGGTTCT 1 chrX:90059-90159 ( 33) GAATGTCCAGGTGCA 1 chrIX:99622-100050 ( 41) TGGTGTACCGATGCT 1 chrXII:950182-950364 ( 46) CGGTGTGTGGGTTAT 1 chrXI:158175-158696 ( 14) GTGTGCACGGGTTGA 1 chrIII:124450-124880 ( 84) GAATGCAAGGATGCT 1 chrXI:99714-99952 ( 58) GGGTGCACGGGCATG 1 chrXVI:520173-520546 ( 23) GCAGGTCTGGGTGTA 1 chrVIII:548648-548799 ( 42) GGTGGTACGGGTTTT 1 chrXV:281897-282412 ( 28) AGAGGAGTGGATGCT 1 chrII:407637-408067 ( 14) TGAGGAATGGGTTCG 1 chrIX:257353-257767 ( 22) CGGTGTACAGATGTC 1 chrXVI:431247-431677 ( 11) GAGTGTACAGGTACA 1 chrII:167830-168233 ( 53) ATATGTCTGGGTTTT 1 chrXII:1018902-1019407 ( 62) GTGGGTCTGGGTCCA 1 chrII:165094-165446 ( 36) CGGTGTATGGGCTAG 1 chrXIII:551336-551821 ( 14) TAATGTACAGATTTT 1 chrVII:609526-609782 ( 27) TAATGTTAGGATGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGRTGTAYGGRTGTD MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 49880 bayes= 9.40241 E= 5.9e-146 -36 -152 99 4 -26 -433 176 -146 67 -1345 140 -416 -1345 -1345 -8 137 -516 -1345 245 -516 -316 -8 -1345 131 112 -175 31 -358 -316 110 -1345 86 -199 -433 234 -1345 -1345 -1345 248 -1345 4 -1345 188 -516 -1345 -233 -175 151 -358 -233 222 -171 -199 48 -152 92 39 -333 48 -4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGRTGTAYGGRTGTD MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 112 E= 5.9e-146 0.250000 0.062500 0.357143 0.330357 0.267857 0.008929 0.607143 0.116071 0.508929 0.000000 0.473214 0.017857 0.000000 0.000000 0.169643 0.830357 0.008929 0.000000 0.982143 0.008929 0.035714 0.169643 0.000000 0.794643 0.696429 0.053571 0.223214 0.026786 0.035714 0.383929 0.000000 0.580357 0.080357 0.008929 0.910714 0.000000 0.000000 0.000000 1.000000 0.000000 0.330357 0.000000 0.660714 0.008929 0.000000 0.035714 0.053571 0.910714 0.026786 0.035714 0.839286 0.098214 0.080357 0.250000 0.062500 0.607143 0.419643 0.017857 0.250000 0.312500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGRTGTAYGGRTGTD MEME-3 regular expression -------------------------------------------------------------------------------- [GTA][GA][AG]TGT[AG][TC]GG[GA]TG[TC][ATG] -------------------------------------------------------------------------------- Time 916.51 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:140368-140928 1.33e-03 75_[+3(1.60e-06)]_10 chrVI:223901-224195 1.29e-03 57_[+3(8.14e-07)]_28 chrXII:749794-750224 9.93e-01 100 chrXVI:775619-776076 2.21e-05 18_[+1(4.05e-09)]_60 chrXIV:89259-89517 3.00e-01 100 chrIV:117060-117645 2.60e-02 66_[-3(1.16e-05)]_1_[-3(5.51e-05)]_\ 3 chrVII:561393-561999 2.76e-05 76_[+1(1.64e-08)]_2 chrI:141855-142285 9.17e-01 100 chrXVI:121322-121752 5.43e-03 72_[-3(9.78e-06)]_13 chrXII:11044-11499 3.00e-06 17_[-3(2.63e-07)]_14_[-3(2.30e-08)]_\ 15_[-3(4.91e-09)]_9 chrXIV:631723-632201 1.49e-01 100 chrV:13372-13557 4.89e-03 17_[-3(2.69e-06)]_68 chrXVI:435649-436250 5.30e-10 5_[+2(9.02e-08)]_14_[+1(4.05e-09)]_\ 34 chrXI:302618-303212 1.38e-03 51_[-1(2.84e-06)]_27 chrIV:1502678-1503108 2.76e-01 100 chrXII:897650-898041 9.93e-04 64_[-3(1.98e-06)]_21 chrXV:445821-446100 5.42e-01 100 chrVI:204775-205196 1.08e-11 [+2(5.20e-09)]_15_[+1(3.78e-10)]_38 chrXV:409756-410186 7.85e-01 100 chrXIII:258998-259498 1.29e-04 20_[+1(1.64e-08)]_58 chrIV:976150-976379 3.39e-02 100 chrIV:1150617-1151201 8.05e-05 61_[+1(9.59e-09)]_17 chrXI:618747-619230 5.01e-03 43_[-3(1.61e-05)]_13_[+3(7.54e-06)]_\ 14 chrIII:954-1284 1.52e-01 100 chrXVI:812978-813408 6.85e-01 100 chrXII:713018-713603 8.13e-01 100 chrI:229430-229678 6.76e-01 100 chrXV:1027961-1028189 9.98e-01 100 chrVI:226522-226963 8.83e-13 7_[+2(2.62e-11)]_15_[+1(8.36e-09)]_\ 31 chrXII:820061-820491 4.62e-01 100 chrII:375676-375837 3.26e-01 100 chrXIII:131575-132136 3.83e-12 31_[+2(4.59e-11)]_14_[+1(9.59e-09)]_\ 8 chrX:651988-652088 4.46e-01 100 chrX:75275-75375 1.03e-03 54_[+3(9.15e-07)]_31 chrXII:932038-932527 1.46e-04 33_[+3(4.38e-08)]_18_[+3(1.78e-06)]_\ 19 chrIII:191500-191930 8.79e-01 100 chrX:538293-538393 1.06e-03 64_[-1(5.86e-07)]_14 chrI:73382-73497 4.87e-01 100 chrVII:876156-876704 5.89e-13 12_[-1(5.45e-09)]_15_[-2(2.62e-11)]_\ 26 chrXIII:733303-733492 1.74e-02 48_[+3(1.16e-05)]_37 chrXI:258599-259001 1.83e-01 100 chrVII:702920-703150 2.73e-01 100 chrXII:656766-657195 8.42e-12 15_[+2(5.20e-09)]_15_[+1(2.57e-10)]_\ 23 chrXVI:40359-40686 4.66e-01 100 chrXIII:168491-169125 1.65e-01 100 chrXIV:374677-375088 1.36e-04 35_[-1(5.86e-07)]_43 chrXII:796329-797396 1.48e-01 100 chrXIV:170861-171291 3.86e-01 100 chrXIII:420436-420908 5.15e-06 18_[+1(2.99e-09)]_60 chrXIV:552935-553365 7.07e-01 100 chrXIV:234243-234393 9.95e-01 100 chrXII:628159-628670 8.10e-04 17_[-1(4.44e-07)]_61 chrVII:996334-996764 8.56e-01 100 chrXII:638526-638657 6.77e-01 100 chrX:607850-607950 1.54e-03 36_[-3(5.05e-07)]_3_[-3(3.41e-05)]_\ 31 chrIV:541367-541822 9.54e-01 100 chrXII:568232-568434 7.30e-01 100 chrVI:101147-101641 2.38e-05 30_[-1(1.44e-08)]_48 chrXVI:781318-781748 9.90e-01 100 chrXV:663556-664142 1.12e-10 24_[+2(3.68e-09)]_16_[+1(4.71e-09)]_\ 13 chrIII:177172-177516 1.77e-01 100 chrXIII:550047-550184 9.93e-01 100 chrIII:293828-293955 9.45e-01 100 chrXVI:404888-405457 9.88e-02 100 chrXIII:183722-184170 1.17e-09 13_[+2(1.20e-09)]_13_[+1(2.26e-07)]_\ 27 chrXIII:504655-505257 1.28e-01 100 chrV:492149-492614 4.77e-09 32_[+2(4.02e-09)]_15_[+1(2.75e-07)]_\ 6 chrXIV:546899-547379 1.44e-10 3_[-1(1.44e-08)]_45_[-2(2.81e-09)]_\ 5 chrXV:431725-432155 6.20e-01 100 chrXII:11857-12054 3.33e-01 100 chrXII:202543-202732 1.48e-01 100 chrXII:875232-875646 1.55e-06 45_[-2(3.08e-09)]_30 chrVII:636-993 3.54e-02 15_[+2(4.65e-05)]_60 chrXIV:102419-103020 3.98e-04 45_[-1(9.79e-08)]_33 chrII:140379-140809 2.32e-01 100 chrVIII:505778-506254 1.10e-03 33_[+3(1.44e-06)]_52 chrXIV:104606-105171 5.10e-06 2_[-2(7.17e-10)]_73 chrVII:598832-599262 2.70e-01 100 chrVII:541536-542197 1.65e-09 32_[-1(7.36e-05)]_14_[-2(9.14e-12)]_\ 7 chrXV:505088-505521 1.09e-02 38_[-3(4.35e-06)]_10_[-3(1.26e-05)]_\ 22 chrV:117848-118372 5.60e-04 25_[+1(3.68e-07)]_53 chrV:138385-138944 3.85e-05 50_[-1(1.44e-08)]_28 chrIV:884122-884622 1.48e-05 37_[-1(7.26e-09)]_41 chrVII:316865-317295 9.45e-01 100 chrX:204466-204566 4.02e-02 78_[-1(1.78e-05)] chrXV:900778-901046 3.51e-01 100 chrXII:262759-263282 4.82e-02 60_[-2(2.59e-05)]_15 chrXVI:795744-795955 7.78e-01 100 chrIV:526247-526677 3.40e-01 100 chrXV:287952-288367 3.53e-01 100 chrXI:458313-458904 1.18e-01 100 chrVII:364143-364371 5.67e-01 100 chrXIV:256557-256987 4.85e-01 100 chrXII:374164-374693 1.07e-05 12_[-2(4.02e-09)]_63 chrII:143476-143906 6.78e-01 100 chrVII:544384-544939 5.98e-02 16_[+1(2.13e-05)]_62 chrXIII:837675-838212 1.58e-01 100 chrXII:1018902-1019407 1.03e-01 61_[+3(4.21e-05)]_24 chrVII:115263-115767 1.75e-03 21_[-1(5.35e-07)]_57 chrII:181351-181634 1.28e-03 51_[-3(3.89e-07)]_34 chrXV:281897-282412 7.14e-06 27_[+3(2.75e-05)]_16_[-1(2.26e-07)]_\ 20 chrXII:589080-589302 2.10e-01 100 chrXV:312720-313150 9.69e-01 100 chrX:228005-228105 9.14e-01 100 chrXVI:770827-771012 6.23e-01 100 chrXVI:76323-76721 3.78e-04 69_[+3(1.48e-07)]_16 chrXIII:320967-321409 1.21e-11 20_[+2(5.20e-09)]_15_[+1(3.78e-10)]_\ 18 chrIII:30650-31080 4.20e-01 100 chrXIV:217223-217653 4.40e-01 100 chrIV:1305413-1305884 9.11e-05 30_[-1(1.10e-08)]_48 chrXV:980424-981059 2.56e-05 59_[-2(2.81e-09)]_16 chrVII:412108-412639 3.51e-05 23_[+1(4.71e-09)]_55 chrVI:137248-137838 2.97e-09 4_[+2(6.15e-09)]_16_[+1(1.35e-07)]_\ 33 chrVII:277035-277406 2.52e-04 55_[-3(3.89e-07)]_30 chrIV:1256880-1257310 1.19e-03 13_[+1(3.68e-07)]_65 chrIX:191513-191943 9.95e-01 100 chrVIII:258000-258430 8.24e-01 100 chrIX:325507-326038 5.15e-11 24_[-1(1.64e-08)]_15_[-2(7.17e-10)]_\ 14 chrXVI:819291-819774 3.05e-06 45_[-1(2.57e-10)]_33 chrVII:826994-827424 9.98e-01 100 chrI:138923-139411 2.38e-05 33_[-1(1.44e-08)]_45 chrII:235824-235935 9.15e-01 100 chrII:165094-165446 3.99e-02 35_[-3(5.51e-05)]_50 chrXV:79773-80132 1.97e-03 22_[+3(9.80e-05)]_7_[+3(9.15e-07)]_\ 41 chrIV:83321-83750 2.58e-04 61_[-1(1.35e-07)]_17 chrXII:48639-49117 2.87e-02 73_[+3(6.32e-06)]_12 chrXII:839253-839421 3.35e-01 100 chrVIII:148238-148668 5.53e-01 100 chrIII:124450-124880 4.75e-02 83_[+3(1.88e-05)]_2 chrXII:84195-84390 3.17e-01 100 chrVII:857277-857678 3.30e-04 43_[+1(4.44e-07)]_35 chrVII:882492-882826 5.36e-01 100 chrXVI:280830-281082 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chrIV:1238169-1238326 9.56e-01 100 chrXV:976133-976754 2.25e-08 26_[-1(1.39e-06)]_15_[-2(2.81e-09)]_\ 12 chrXIII:661768-661909 5.18e-01 100 chrXVI:242696-243126 4.33e-01 100 chrXIV:575334-575584 3.82e-01 100 chrXVI:571975-572544 2.40e-04 58_[-1(2.26e-07)]_20 chrVII:304894-305324 5.32e-01 100 chrII:350585-350996 6.69e-01 100 chrVII:328317-328908 3.26e-09 55_[-2(9.14e-12)]_20 chrXIII:652494-652924 4.98e-01 100 chrXIV:96052-96548 8.27e-10 2_[+2(1.13e-07)]_14_[+1(4.43e-08)]_\ 1_[-1(5.17e-05)]_14 chrIII:11053-11505 3.72e-02 6_[+3(6.72e-05)]_79 chrII:554463-554893 9.75e-02 100 chrXV:779693-780280 2.91e-01 100 chrIII:163386-163944 2.18e-04 30_[+3(7.49e-08)]_15_[+3(1.61e-05)]_\ 25 chrXIII:551336-551821 1.33e-01 13_[+3(7.17e-05)]_72 chrIV:1489146-1489613 6.74e-01 100 chrXI:490687-491152 9.30e-01 100 chrIV:490867-491276 3.72e-01 100 chrXVI:67039-67267 4.39e-02 48_[+2(6.49e-05)]_27 chrIV:359313-359867 1.49e-03 35_[-1(5.35e-07)]_43 chrXII:87006-87118 7.15e-01 100 chrVI:167251-167707 1.25e-07 59_[-2(1.47e-10)]_16 chrIV:355993-356423 7.36e-01 100 chrVII:840672-841102 7.05e-01 100 chrX:157438-157538 9.39e-01 100 chrVII:291685-291828 9.75e-01 100 chrXVI:378645-379068 7.71e-04 7_[+3(5.26e-06)]_10_[+3(4.44e-07)]_\ 53 chrIV:915898-916328 6.21e-01 100 chrVII:1057194-1057624 7.52e-01 100 chrXIV:291806-292236 5.48e-01 100 chrIV:221952-222360 1.28e-06 27_[+3(3.33e-10)]_58 chrX:531577-531677 7.27e-10 20_[-1(1.35e-07)]_13_[-2(1.20e-09)]_\ 20 chrXV:759212-759642 1.98e-01 100 chrIII:197423-197559 9.88e-01 100 chrVII:706932-707408 3.17e-05 38_[+1(4.05e-09)]_40 chrXV:216228-216689 4.76e-03 49_[-3(2.42e-06)]_1_[-3(5.51e-05)]_\ 20 chrXVI:860110-860583 9.87e-01 100 chrVIII:293067-293497 7.85e-01 100 chrXV:167893-168499 9.66e-03 40_[+3(5.77e-06)]_4_[-3(3.93e-05)]_\ 26 chrIII:15603-15818 9.03e-01 100 chrXV:709931-710425 3.02e-03 71_[-1(9.94e-07)]_7 chrIV:1030065-1030495 7.96e-01 100 chrIV:492337-492521 6.47e-01 100 chrXII:815400-815830 3.87e-02 100 chrVII:481971-482401 7.62e-01 100 chrIV:437484-438012 6.70e-05 72_[-1(1.10e-08)]_6 chrXIV:569771-570092 2.02e-06 38_[+1(2.57e-10)]_40 chrXV:109747-110021 3.32e-03 64_[+3(8.25e-06)]_21 chrXIV:444454-444817 6.79e-03 18_[+3(7.54e-06)]_1_[+3(3.26e-06)]_\ 51 chrIV:509278-509453 3.74e-01 100 chrXIII:297815-298379 5.25e-01 100 chrXIV:229835-230112 7.85e-01 100 chrII:405601-406213 3.83e-12 19_[-1(9.59e-09)]_14_[-2(4.59e-11)]_\ 20 chrVII:64906-65336 1.02e-01 30_[+1(6.34e-05)]_48 chrXV:92903-93437 3.38e-01 100 chrXV:968111-968385 9.20e-05 22_[-1(7.73e-05)]_25_[+3(1.28e-06)]_\ 16 chrV:67261-67691 3.95e-01 100 chrX:378144-378244 1.60e-05 50_[-1(2.99e-09)]_28 chrXII:639763-640193 9.98e-01 100 chrIV:1441202-1441632 3.91e-02 100 chrXIII:923531-923796 4.08e-01 100 chrXIV:716185-716502 4.21e-01 100 chrXIV:602152-602502 8.05e-15 33_[-1(2.57e-10)]_16_[-2(3.39e-12)]_\ 4 chrII:407637-408067 7.19e-02 13_[+3(3.17e-05)]_72 chrXV:83179-83515 6.63e-02 20_[-1(8.11e-05)]_58 chrXIII:290569-291058 1.65e-09 36_[-1(7.36e-05)]_14_[-2(9.14e-12)]_\ 3 chrV:152234-152664 6.09e-01 100 chrVII:828496-829046 3.83e-12 13_[+2(4.59e-11)]_14_[+1(9.59e-09)]_\ 26 chrXIII:191655-192085 2.72e-01 100 chrII:392473-392903 2.36e-01 100 chrVII:346055-346485 1.94e-02 30_[+2(2.16e-05)]_45 chrVII:959231-959661 9.59e-01 100 chrI:568-779 5.37e-01 100 chrV:99906-100406 9.38e-08 25_[-1(6.41e-07)]_14_[-2(1.25e-07)]_\ 14 chrV:61507-62190 2.99e-01 100 chrII:326595-327139 4.45e-04 27_[+1(4.66e-05)]_51 chrXII:426942-427443 6.22e-04 24_[-2(6.75e-08)]_51 chrIII:137515-137945 9.67e-01 100 chrXII:605126-605620 7.52e-01 100 chrXV:796956-797330 6.54e-01 100 chrIX:99622-100050 3.13e-02 40_[+3(1.48e-05)]_45 chrVII:930791-931314 7.47e-04 [+1(1.35e-07)]_78 chrVIII:5260-5690 8.18e-02 100 chrVIII:85188-85583 3.46e-05 15_[+1(4.71e-09)]_63 chrVII:726413-726784 1.22e-03 37_[-3(3.45e-07)]_2_[-3(3.45e-07)]_\ 31 chrXIV:351896-352322 9.60e-01 100 chrIV:1461582-1462135 1.15e-03 [+1(4.44e-07)]_78 chrV:430965-431652 3.28e-01 100 chrVIII:548648-548799 8.59e-03 41_[+3(2.36e-05)]_44 chrII:557184-557614 8.96e-01 100 chrIX:210471-210917 8.05e-15 19_[-1(2.57e-10)]_16_[-2(3.39e-12)]_\ 18 chrVI:135785-136215 9.46e-01 100 chrIV:1062890-1063084 9.71e-04 18_[+3(5.64e-07)]_67 chrXI:665731-665875 5.76e-01 100 chrXII:84287-84717 4.69e-01 100 chrXII:1028140-1028591 2.10e-03 81_[-3(1.04e-06)]_4 chrVIII:455639-456069 7.40e-01 100 chrII:798655-799085 9.91e-01 100 chrXV:33443-33873 4.37e-01 100 chrXV:1003987-1004432 7.99e-02 100 chrV:551112-551613 1.05e-06 25_[+1(1.38e-10)]_53 chrVII:185596-185976 2.51e-05 29_[+1(5.45e-09)]_49 chrVII:365013-365136 9.34e-01 100 chrIV:914600-915030 8.33e-01 100 chrVIII:115950-116398 6.66e-05 34_[+1(1.64e-08)]_44 chrXI:612272-612702 3.83e-01 100 chrX:424347-424447 6.86e-01 100 chrII:167830-168233 2.04e-02 52_[-3(4.21e-05)]_33 chrX:542745-542845 1.25e-07 12_[+2(1.47e-10)]_63 chrIV:1468798-1469118 9.93e-01 100 chrIV:1524547-1524977 7.74e-01 100 chrXV:34-236 9.81e-05 [-3(2.30e-08)]_85 chrIX:355793-356223 4.14e-01 100 chrXII:167752-168246 2.76e-05 55_[+1(1.64e-08)]_23 chrIII:281089-281519 7.01e-01 100 chrII:347353-347891 6.06e-05 29_[-1(2.26e-07)]_49 chrXIII:296749-297753 9.29e-01 100 chrIV:619756-620287 1.82e-08 9_[+2(4.02e-09)]_15_[+1(1.18e-06)]_\ 29 chrIII:36-517 2.47e-06 8_[-3(2.30e-08)]_13_[-3(2.63e-07)]_\ 19_[-3(4.91e-09)]_15 chrXV:353856-354312 7.37e-11 18_[+2(7.17e-10)]_15_[+1(2.41e-08)]_\ 20 chrIX:254230-254553 5.37e-05 15_[+3(2.32e-07)]_35_[+3(5.90e-05)]_\ 20 chrII:612133-612563 5.73e-02 100 chrXIII:388359-388515 5.99e-02 40_[-2(3.70e-05)]_35 chrIV:541362-541822 9.54e-01 100 chrXIII:352070-352428 5.49e-01 100 chrXII:950182-950364 1.65e-02 45_[-3(1.74e-05)]_40 chrXII:673718-674311 1.22e-01 100 chrXVI:654280-654710 3.47e-01 100 chrVIII:475585-475961 2.79e-02 34_[+1(1.78e-05)]_44 chrXI:287696-288126 9.15e-01 100 chrII:611933-612363 9.87e-01 100 chrVI:191319-191843 9.22e-05 61_[+1(1.44e-08)]_17 chrXVI:98653-99083 9.60e-01 100 chrXIV:632366-632848 2.13e-05 40_[-1(1.35e-07)]_38 chrXVI:520173-520546 3.25e-04 22_[+3(2.19e-05)]_16_[-3(2.55e-05)]_\ 32 chrXI:447456-447886 3.63e-01 100 chrII:592872-593300 1.13e-03 47_[+3(3.45e-07)]_38 chrIV:802547-803051 1.51e-05 32_[+1(8.77e-08)]_46 chrII:373172-373347 8.88e-02 100 chrVII:919850-920200 8.24e-01 100 chrVI:64851-65360 5.30e-01 100 chrIX:138551-138981 9.83e-01 100 chrIII:16931-17161 7.89e-01 100 chrVII:576751-577181 6.89e-01 100 chrXIV:585881-586242 6.29e-01 100 chrIV:1450868-1451275 1.09e-02 60_[+3(1.26e-05)]_25 chrII:166078-166508 7.87e-01 100 chrIV:1300920-1301375 1.17e-02 10_[-3(4.35e-06)]_1_[+3(3.41e-05)]_\ 59 chrIV:946116-946602 1.25e-07 54_[-2(1.47e-10)]_21 chrXII:784120-784552 1.06e-04 66_[-1(1.87e-08)]_12 chrX:90059-90159 6.33e-03 32_[-3(1.37e-05)]_53 chrIX:68165-68538 1.89e-04 47_[-3(6.43e-07)]_3_[+3(6.30e-05)]_\ 20 chrXII:818751-819202 1.09e-03 71_[-3(2.94e-06)]_14 chrIX:370172-370694 1.65e-09 32_[-1(7.36e-05)]_14_[-2(9.14e-12)]_\ 7 chrXIII:145858-146298 4.47e-04 54_[-3(7.49e-08)]_31 chrVIII:122219-122448 6.21e-01 100 chrXII:949489-949919 9.54e-01 100 chrII:332274-332818 2.81e-02 27_[-3(9.78e-06)]_58 chrXIII:924137-924419 2.59e-03 73_[+3(6.43e-07)]_12 chrXIV:619843-619978 9.47e-01 100 chrIX:257353-257767 1.00e-01 21_[-3(3.66e-05)]_64 chrIV:1352331-1352799 7.47e-05 2_[+1(5.45e-09)]_76 chrVII:878598-879060 2.62e-03 15_[+1(2.84e-06)]_63 chrXIV:575483-575913 7.18e-01 100 chrXV:725237-725438 6.39e-01 100 chrXV:93885-94176 4.49e-01 100 chrXII:522141-522435 6.10e-03 38_[-3(1.26e-05)]_10_[-3(1.44e-06)]_\ 22 chrXII:150398-150828 8.07e-01 100 chrXI:159205-159418 7.68e-01 100 chrIV:914889-915319 5.77e-01 100 chrV:396166-396594 1.28e-03 47_[-3(5.64e-07)]_3_[-3(5.17e-05)]_\ 20 chrXI:666443-666790 2.32e-06 44_[+3(4.91e-09)]_13_[+3(8.14e-07)]_\ 13 chrI:69738-70168 5.52e-01 100 chrIII:123429-123840 4.53e-11 4_[+2(1.87e-10)]_14_[+1(2.49e-07)]_\ 35 chrII:44967-45367 1.14e-03 51_[-3(4.44e-07)]_3_[+3(5.77e-06)]_\ 16 chrXI:308001-308460 3.43e-05 16_[+1(4.71e-09)]_62 chrVIII:148938-149332 1.93e-01 9_[+3(9.80e-05)]_76 chrXII:1051894-1052363 8.05e-15 4_[+2(3.39e-12)]_16_[+1(2.57e-10)]_\ 33 chrI:141647-141881 9.99e-01 100 chrVIII:451112-451542 4.18e-01 100 chrXII:687647-688186 4.14e-11 4_[+2(3.68e-09)]_16_[+1(2.99e-09)]_\ 33 chrXIII:25064-25494 3.67e-01 100 chrXV:305071-305501 5.70e-01 100 chrXIV:495177-495608 3.45e-03 34_[+3(1.98e-06)]_2_[+3(1.88e-05)]_\ 34 chrII:642877-643261 2.96e-05 38_[+1(4.05e-09)]_40 chrIV:1080528-1080699 1.30e-01 100 chrXV:791534-791964 5.00e-01 100 chrV:301571-302001 7.74e-01 100 chrVII:147988-148194 2.99e-01 100 chrXVI:679031-679461 9.44e-01 100 chrXIV:442813-443330 1.28e-01 100 chrVII:730918-731416 2.21e-09 18_[-1(9.79e-08)]_16_[-2(6.15e-09)]_\ 19 chrXIII:163589-163802 6.58e-01 100 chrVII:555284-555716 9.37e-05 58_[-3(5.05e-07)]_1_[+3(1.26e-05)]_\ 11 chrV:225463-225613 5.76e-01 100 chrI:36-187 3.40e-01 100 chrXIII:747730-748225 1.76e-05 15_[+1(9.59e-09)]_63 chrV:469223-469674 2.86e-05 57_[-1(4.71e-09)]_21 chrXIII:5264-5821 1.61e-05 49_[-3(2.30e-08)]_17_[-3(4.91e-09)]_\ 4 chrXI:29-216 6.20e-02 100 chrVII:311160-311568 9.20e-01 100 chrXIII:501045-501475 9.59e-01 100 chrXVI:214968-215121 6.33e-01 100 chrII:415468-415898 2.00e-03 48_[+3(8.14e-07)]_37 chrVIII:382879-383411 2.67e-05 4_[+3(1.89e-08)]_2_[+3(1.74e-05)]_\ 64 chrXII:809321-809558 1.64e-01 100 chrV:438446-438940 2.98e-06 55_[-1(2.99e-09)]_23 chrII:605682-606149 1.44e-03 49_[-3(1.44e-06)]_36 chrV:69007-69382 1.24e-04 34_[+3(7.49e-08)]_51 chrXVI:281388-281915 9.47e-01 100 chrVIII:262314-262744 9.97e-01 100 chrIX:29-242 4.73e-01 100 chrIII:30579-30754 3.27e-01 100 chrVII:479653-479915 8.70e-01 100 chrIV:1302562-1302992 9.25e-01 100 chrXVI:718658-718939 2.24e-01 100 chrVII:738880-739334 4.97e-07 63_[-1(1.38e-10)]_15 chrIV:835754-836246 3.60e-02 12_[-3(1.07e-05)]_73 chrVII:779333-779857 3.13e-04 69_[-1(5.59e-08)]_9 chrX:121402-121502 3.81e-01 100 chrVIII:292204-292634 1.48e-02 100 chrIV:1201499-1202014 8.11e-06 42_[-1(5.45e-09)]_36 chrVIII:125921-126316 4.03e-04 32_[-3(1.68e-07)]_53 chrIV:1165023-1165453 8.98e-01 100 chrVI:64146-64576 9.22e-01 100 chrXII:837775-838131 7.94e-03 29_[+3(6.88e-06)]_56 chrIX:183237-183732 8.05e-15 17_[+2(3.39e-12)]_16_[+1(2.57e-10)]_\ 20 chrIX:174790-175322 5.15e-11 23_[-1(1.64e-08)]_15_[-2(7.17e-10)]_\ 15 chrXV:228048-228572 1.99e-04 69_[-1(9.79e-08)]_9 chrX:197174-197274 6.03e-01 100 chrXIII:225332-225765 3.91e-05 45_[-3(2.97e-07)]_40 chrVII:73675-74137 3.13e-05 25_[+1(4.71e-09)]_53 chrIV:1355700-1356040 1.10e-03 17_[+3(2.63e-07)]_9_[+3(5.05e-07)]_\ 44 chrIV:1489993-1490434 2.40e-01 100 chrXI:219663-220124 8.98e-07 50_[-1(1.38e-10)]_28 chrVII:149108-149529 4.73e-04 48_[+3(7.49e-08)]_37 chrVII:287222-287699 1.67e-03 24_[+1(2.84e-06)]_54 chrVIII:401076-401243 3.86e-01 100 chrII:165869-166299 1.00e-01 100 chrVI:161964-162446 4.58e-04 71_[-1(1.35e-07)]_7 chrXII:448503-449016 6.88e-01 100 chrVII:480160-480590 2.62e-01 100 chrV:101393-101571 9.82e-01 100 chrXIII:572701-573224 3.75e-03 22_[+1(9.12e-07)]_56 chrIV:132812-132961 5.89e-01 100 chrVII:601077-601507 7.63e-01 100 chrIV:1239856-1239982 3.85e-01 100 chrXIV:560467-561042 3.02e-10 [+2(7.17e-10)]_15_[+1(1.09e-07)]_38 chrII:36154-36573 1.48e-01 100 chrXIV:281956-282386 2.64e-01 100 chrIII:14462-14737 1.93e-01 100 chrVII:365095-365307 9.40e-01 100 chrVIII:62532-62975 6.09e-03 50_[-1(2.84e-06)]_28 chrXI:140753-141373 1.65e-09 16_[+2(9.14e-12)]_14_[+1(7.36e-05)]_\ 23 chrVI:221728-222096 5.21e-03 56_[+3(1.98e-06)]_29 chrIV:555223-555653 8.66e-01 100 chrIV:306553-306983 9.92e-01 100 chrVIII:358349-358826 1.14e-03 11_[+1(1.28e-06)]_67 chrV:265593-266023 9.13e-01 100 chrXIII:379146-379612 6.40e-04 58_[+1(2.84e-06)]_20 chrXVI:586582-587012 7.55e-01 100 chrXVI:731902-732381 2.16e-03 11_[-3(8.14e-07)]_74 chrX:374220-374320 5.06e-09 27_[+1(2.13e-05)]_21_[+2(4.59e-11)]_\ 5 chrXVI:559995-560559 1.08e-03 41_[+1(1.28e-06)]_15_[+1(3.97e-05)] chrVIII:562272-562615 1.12e-04 71_[+3(2.30e-08)]_14 chrXII:810953-811383 9.45e-02 100 chrXII:282490-282888 4.68e-03 16_[-3(1.44e-06)]_2_[-3(2.55e-05)]_\ 52 chrVII:397971-398102 1.62e-01 100 chrV:270354-270717 1.32e-02 [-3(2.69e-06)]_24_[-3(9.78e-06)]_46 chrI:180934-181469 1.32e-01 100 chrV:130959-131396 1.28e-03 5_[+1(1.50e-07)]_73 chrXIII:754404-754834 2.09e-03 1_[+3(2.63e-07)]_84 chrXIII:499843-500105 2.08e-01 100 chrXIII:480439-480892 5.89e-13 17_[+2(2.62e-11)]_15_[+1(5.45e-09)]_\ 21 chrXIII:222707-222974 5.69e-01 100 chrIV:444065-444495 4.54e-01 100 chrXV:866553-866974 3.21e-04 23_[-3(1.61e-05)]_3_[+3(8.96e-06)]_\ 44 chrIX:336171-336711 4.13e-02 8_[+1(1.78e-05)]_70 chrXII:498433-498993 6.69e-03 8_[-3(2.42e-06)]_77 chrX:233713-233813 2.00e-09 36_[-1(1.18e-06)]_15_[-2(3.74e-10)]_\ 2 chrXII:856861-857023 5.62e-01 100 chrVIII:292405-292835 7.31e-02 42_[+2(4.91e-05)]_33 chrI:143127-143539 7.41e-01 100 chrX:119251-119351 8.71e-01 100 chrX:74590-74690 5.63e-01 100 chrXIII:372300-372770 4.66e-05 12_[+1(4.71e-09)]_66 chrV:61073-61541 9.99e-01 100 chrXIII:286437-286867 4.82e-01 100 chrVI:210456-210908 1.05e-01 100 chrVII:483294-483749 1.50e-05 6_[-2(1.73e-05)]_44_[+3(5.64e-07)]_\ 10 chrXVI:209995-210529 7.96e-02 100 chrIX:131813-132036 9.36e-01 100 chrXIV:505450-505880 9.45e-01 100 chrIV:358113-358436 6.27e-03 23_[+3(1.60e-06)]_62 chrXVI:699913-700446 3.19e-03 16_[-3(1.74e-05)]_7_[-3(5.77e-06)]_\ 47 chrIV:488500-489082 1.21e-05 67_[+2(3.37e-09)]_8 chrXV:624305-624477 9.51e-01 100 chrXIII:91769-92081 7.57e-01 100 chrXIII:122959-123389 4.47e-01 100 chrIV:356714-356936 7.09e-01 100 chrXVI:184886-185316 7.21e-01 100 chrXII:962832-963336 1.17e-03 [+1(2.26e-07)]_78 chrII:9295-9790 1.59e-01 100 chrVII:883752-884030 9.17e-01 100 chrXI:99714-99952 8.92e-03 57_[-3(2.03e-05)]_28 chrXIV:330777-331121 9.00e-03 49_[-3(3.96e-06)]_36 chrVII:784724-785154 1.84e-01 100 chrIV:1525334-1525661 4.73e-01 100 chrXVI:431247-431677 5.53e-02 10_[-3(3.93e-05)]_75 chrIV:667769-668291 1.68e-08 38_[+2(3.39e-12)]_37 chrXVI:302611-303016 5.23e-03 64_[-3(7.34e-07)]_21 chrXII:5399-5905 9.12e-06 62_[-3(2.30e-08)]_23 chrXI:382196-382456 2.34e-04 27_[-3(1.78e-06)]_41_[-3(7.54e-06)]_\ 2 chrXI:326731-327161 3.00e-02 75_[+1(7.00e-05)]_3 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (3) found. ******************************************************************************** CPU: kali.stanford.edu ********************************************************************************