Invoking:
  getsize /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa 1> $metrics
Finished invoke:
  name: count_seqs  status: 0  time: 0.014438
Invoking:
  fasta-most -min 50 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa 1> $metrics
Finished invoke:
  name: most_seqs  status: 0  time: 0.058165
Invoking:
  fasta-center -dna -len 100 < /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/seqs-centered
Finished invoke:
  name: center_seqs  status: 0  time: 0.072666
Invoking:
  fasta-shuffle-letters /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/seqs-centered /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/seqs-shuffled -kmer 2 -tag -dinuc -dna -seed 1
Finished invoke:
  name: shuffle_seqs  status: 0  time: 0.014249
Invoking:
  fasta-subsample /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/seqs-centered 600 -rest /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/seqs-discarded -seed 1 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/seqs-sampled
Finished invoke:
  name: sample_seqs  status: 0  time: 0.065357
Invoking:
  fasta-get-markov -nostatus -nosummary -dna -m 1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background
Finished invoke:
  name: bg  status: 0  time: 0.011667
Invoking:
  meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/seqs-sampled -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out -mod zoops -nmotifs 3 -minw 6 -maxw 30 -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background -dna -revcomp -nostatus
Finished invoke:
  name: meme  status: 0  time: 1176.874733
Invoking:
  dreme -v 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out -png -dna -p /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/seqs-centered -n /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/seqs-shuffled
Finished invoke:
  name: dreme  status: 0  time: 214.270686
Invoking:
  centrimo -seqlen 416 -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/centrimo_out -bfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml
Finished invoke:
  name: centrimo  status: 0  time: 0.502829
Invoking:
  tomtom -verbosity 1 -text -thresh 0.1 /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/combined.meme /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/combined.meme 1> /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/motif_alignment.txt
Finished invoke:
  name: align  status: 0  time: 1.553791
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/spamo_out_1 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background -primary SSCYTWWMCMACTVGGCCAM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo1  status: 0  time: 1.446441
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/spamo_out_2 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background -primary BSGGRRTCGAACCSVKGAYCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo2  status: 0  time: 1.357342
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/spamo_out_3 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background -primary ACCWCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo3  status: 0  time: 1.044503
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/spamo_out_4 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background -primary TGTAYGGR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo4  status: 0  time: 0.668909
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/spamo_out_5 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background -primary TAAGGCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo5  status: 0  time: 0.97629
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/spamo_out_6 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background -primary SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo6  status: 0  time: 1.087374
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/spamo_out_7 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background -primary ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo7  status: 0  time: 0.880138
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/spamo_out_8 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background -primary GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo8  status: 0  time: 0.70641
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/spamo_out_9 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background -primary CACTATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo9  status: 0  time: 0.703792
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/spamo_out_10 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background -primary AAAAADAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo10  status: 0  time: 1.015737
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/spamo_out_11 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background -primary AAGCGWGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo11  status: 0  time: 0.605981
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/spamo_out_12 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background -primary GTATGACW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo12  status: 0  time: 0.452211
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/spamo_out_13 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background -primary GAGATAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo13  status: 0  time: 0.227349
Invoking:
  spamo -verbosity 1 -oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/spamo_out_14 -bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background -primary GRTCTCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml
Finished invoke:
  name: spamo14  status: 0  time: 0.244428
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/fimo_out_1 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background --motif SSCYTWWMCMACTVGGCCAM /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa
Finished invoke:
  name: fimo1  status: 0  time: 0.236749
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/fimo_out_2 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background --motif BSGGRRTCGAACCSVKGAYCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme_out/meme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa
Finished invoke:
  name: fimo2  status: 0  time: 0.234926
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/fimo_out_3 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background --motif ACCWCT /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa
Finished invoke:
  name: fimo3  status: 0  time: 0.137115
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/fimo_out_4 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background --motif TGTAYGGR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa
Finished invoke:
  name: fimo4  status: 0  time: 0.156798
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/fimo_out_5 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background --motif TAAGGCR /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa
Finished invoke:
  name: fimo5  status: 0  time: 0.153447
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/fimo_out_6 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background --motif SAAGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa
Finished invoke:
  name: fimo6  status: 0  time: 0.135703
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/fimo_out_7 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background --motif ATGGCAWC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa
Finished invoke:
  name: fimo7  status: 0  time: 0.1559
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/fimo_out_8 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background --motif GCKCTACC /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa
Finished invoke:
  name: fimo8  status: 0  time: 0.15673
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/fimo_out_9 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background --motif CACTATA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa
Finished invoke:
  name: fimo9  status: 0  time: 0.13923
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/fimo_out_10 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background --motif AAAAADAA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa
Finished invoke:
  name: fimo10  status: 0  time: 0.158372
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/fimo_out_11 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background --motif AAGCGWGA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa
Finished invoke:
  name: fimo11  status: 0  time: 0.154755
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/fimo_out_12 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background --motif GTATGACW /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa
Finished invoke:
  name: fimo12  status: 0  time: 0.154324
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/fimo_out_13 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background --motif GAGATAY /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa
Finished invoke:
  name: fimo13  status: 0  time: 0.151783
Invoking:
  fimo --parse-genomic-coord --verbosity 1 --oc /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/fimo_out_14 --bgfile /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/background --motif GRTCTCCA /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/dreme_out/dreme.xml /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/BY4741--STE12.fa
Finished invoke:
  name: fimo14  status: 0  time: 0.156582
Writing output
Invoking:
  meme-chip_html_to_tsv /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/meme-chip.html /srv/www/kundaje/amr1/yeastvar/meme_results/results/aa_results/BY4741--STE12/summary.tsv
Finished invoke:
  name: summary  status: 0  time: 0.162973
Done